Citrus Sinensis ID: 008362
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STT5 | 935 | ABC transporter A family | yes | no | 0.985 | 0.598 | 0.746 | 0.0 | |
| Q9FLT8 | 917 | ABC transporter A family | no | no | 0.982 | 0.608 | 0.709 | 0.0 | |
| Q1PEH6 | 932 | ABC transporter A family | no | no | 0.978 | 0.596 | 0.692 | 0.0 | |
| Q9STT7 | 936 | ABC transporter A family | no | no | 0.978 | 0.594 | 0.690 | 0.0 | |
| Q8LPK0 | 901 | ABC transporter A family | no | no | 0.968 | 0.610 | 0.697 | 0.0 | |
| Q9STT8 | 937 | ABC transporter A family | no | no | 0.982 | 0.595 | 0.687 | 0.0 | |
| Q9STT6 | 926 | ABC transporter A family | no | no | 0.975 | 0.598 | 0.679 | 0.0 | |
| Q9FLT4 | 909 | ABC transporter A family | no | no | 0.973 | 0.608 | 0.658 | 0.0 | |
| Q54DT1 | 845 | ABC transporter A family | yes | no | 0.941 | 0.633 | 0.332 | 6e-76 | |
| Q8T6J0 | 839 | ABC transporter A family | no | no | 0.931 | 0.630 | 0.323 | 5e-73 |
| >sp|Q9STT5|AB7A_ARATH ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/565 (74%), Positives = 475/565 (84%), Gaps = 5/565 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGDGPYW+ISYAYF IS +Y++C ++FGS IGL+FF LNSY IQFVFY +Y+N
Sbjct: 373 IMKMHGLGDGPYWMISYAYFLTISVLYVICLMIFGSAIGLKFFRLNSYSIQFVFYFLYLN 432
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQIALAFLV+++FS VKT++V YI VFG+GLLG FLL +ED SFPR WI MELYPG
Sbjct: 433 LQIALAFLVSSVFSKVKTSTVASYIYVFGSGLLGLFLLNFLIEDSSFPRGWIIVMELYPG 492
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYE ++FRG+ G DGM W D DS M +V I+ VEW L L AYY+DK
Sbjct: 493 FSLYRGLYELAQFAFRGNLRGEDGMKWKDFGDS--AMDDVFYIIVVEWFLALIAAYYIDK 550
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
I SSG + PL+FLQN KKS S R+PSL RQ SKV V MEKPDVT E ++VE+L+LE
Sbjct: 551 ISSSG--RNPLFFLQNPFKKS-PSLRRPSLQRQGSKVSVDMEKPDVTHESKKVERLMLES 607
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
TSHAI+ DNL+K+YPGRDGNP K+AV GLSLA+PSGECFGMLGPNGAGKT+FI+MM G+
Sbjct: 608 STSHAIVCDNLKKVYPGRDGNPPKLAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGL 667
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+ TSGTA VQGLDI DMDR+YTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG L
Sbjct: 668 LKPTSGTALVQGLDICNDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGADLN 727
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESLKSVNLFHGGVADK AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR
Sbjct: 728 QAVEESLKSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 787
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
NLW V+KRAKQ AIILTTHSMEEAE LCDRLGIFVDG LQCIGNPKELK RYGGSYVF
Sbjct: 788 KNLWTVIKRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNPKELKGRYGGSYVF 847
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS++HE+ VE + K +SP A KIY I+GTQKFELPK+EVR+S+VFQAVE+AKS FTV
Sbjct: 848 TMTTSSEHEQNVEKLIKDVSPNAKKIYHIAGTQKFELPKEEVRISEVFQAVEKAKSNFTV 907
Query: 541 FAWGLADTTLEDVFIKVARHAQAFE 565
FAWGLADTTLEDVFIKV R+ QAF
Sbjct: 908 FAWGLADTTLEDVFIKVVRNGQAFN 932
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/568 (70%), Positives = 465/568 (81%), Gaps = 10/568 (1%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGDGPYW+ISYAYF IS +Y++ V FGS IGL++F N Y IQFVFY IY N
Sbjct: 358 IMKMHGLGDGPYWMISYAYFLTISMLYVISLVGFGSAIGLKYFRRNDYSIQFVFYFIYSN 417
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFLV+++FS VKT +VI YI V+GTGLLG+FL Q +E SFP WI AMELYPG
Sbjct: 418 LQISLAFLVSSIFSKVKTVTVIAYILVYGTGLLGSFLFQKMIETQSFPEEWILAMELYPG 477
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF Y+ RG +GM W DLSDS GM EV IM VEW L L +AYY+D+
Sbjct: 478 FSLYRGLYEFSQYASRG-----NGMKWQDLSDS--GMGEVFCIMSVEWFLALIVAYYIDQ 530
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSK-VFVSMEKPDVTQERERVEQLLLE 239
+ +SG K P +FL N K S R+P++ R DSK VF+ M+K DVTQERE V++L E
Sbjct: 531 VFTSG--KHPFFFLVNLFKSPSSLPRRPTVQRLDSKRVFIDMDKHDVTQERESVQKLRNE 588
Query: 240 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299
T HAI+ DNL+K+YPGRDGNP K+AV GL L++ SGECFGMLGPNGAGKT+FISMM G
Sbjct: 589 GSTGHAILCDNLKKVYPGRDGNPPKMAVRGLYLSVSSGECFGMLGPNGAGKTSFISMMTG 648
Query: 300 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
+ + +SGTA VQGLDI DM+++YTSMGVCPQ DLLWETLTGREHLLFYGRLKN+KG L
Sbjct: 649 LLKPSSGTALVQGLDICKDMNKVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNIKGSDL 708
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
TQAVEESLKSV+L+ GGV DK AG YSGGMKRRLSVAISLIGNPKVVY+DEPSTGLDPAS
Sbjct: 709 TQAVEESLKSVSLYDGGVGDKPAGNYSGGMKRRLSVAISLIGNPKVVYLDEPSTGLDPAS 768
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
R NLWNV+KRAKQ AIILTTHSMEEAE LCDRLGIFVDG LQCIGN KELK+RYGGSYV
Sbjct: 769 RKNLWNVIKRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNSKELKSRYGGSYV 828
Query: 480 FTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFT 539
FTMTTS+ HEEEVE + + +SP A KIY ++GTQKFELPKQEVR+++VF+AVE+AK+ FT
Sbjct: 829 FTMTTSSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPKQEVRIAEVFRAVEKAKANFT 888
Query: 540 VFAWGLADTTLEDVFIKVARHAQAFEDL 567
VFAWGLADTTLEDVFIKVAR AQAF L
Sbjct: 889 VFAWGLADTTLEDVFIKVARTAQAFISL 916
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PEH6|AB3A_ARATH ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/566 (69%), Positives = 456/566 (80%), Gaps = 10/566 (1%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGDGPYW+ISYAYF +S+ Y++ ++FGSVIGL+FF LN + +QF FY +YIN
Sbjct: 373 IMKMHGLGDGPYWIISYAYFLALSTFYIIFLMIFGSVIGLKFFLLNDFSLQFSFYFVYIN 432
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++AFL+++ FS V+TASV Y+ VFG+GLLG FL Q +E SFPRRWI MELYPG
Sbjct: 433 LQISIAFLLSSAFSKVETASVAAYLYVFGSGLLGMFLFQFLLEGLSFPRRWIFVMELYPG 492
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF +++G+ G DGM W SD N + EV I+ VEW + L YY+DK
Sbjct: 493 FSLYRGLYEFSQNAYQGNLNGKDGMKWKYFSD--NAIDEVFYIIIVEWFVALIATYYIDK 550
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFR-KPSLGRQDSKVFVSMEKPDVTQERERVEQLLLE 239
+ SSG K L+FL+N ++ F+ SL +Q S + V MEK DV E E+V QL+LE
Sbjct: 551 MSSSG--KDLLFFLKN-----QNPFKISHSLQKQVSAISVEMEKLDVIHESEKVAQLMLE 603
Query: 240 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299
TSHAI+ D LRK+YPGRDGNP K AV LSLA+PSGECFGMLGPNGAGKT+FI+MM G
Sbjct: 604 SSTSHAIVCDKLRKVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTG 663
Query: 300 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
+ + TSG A+VQGLDI DMDR+YTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG L
Sbjct: 664 LVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDL 723
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
QAVEESL+SVNLFHGGVADK AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS
Sbjct: 724 NQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
R NLW V+K AK+ AIILTTHSMEEAE LCDRLGIFVDG LQCIGNPKELK RYGGSYV
Sbjct: 784 RKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYV 843
Query: 480 FTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFT 539
TMTTS++HE++VE + + +SP KIY I+GTQKFE+PK EVR+S+VFQ VE+AKS F
Sbjct: 844 LTMTTSSEHEKDVEMLVQEVSPNVKKIYHIAGTQKFEIPKDEVRISEVFQVVEKAKSNFK 903
Query: 540 VFAWGLADTTLEDVFIKVARHAQAFE 565
VFAWGLADTTLEDVFIKVAR AQAF
Sbjct: 904 VFAWGLADTTLEDVFIKVARTAQAFN 929
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STT7|AB5A_ARATH ABC transporter A family member 5 OS=Arabidopsis thaliana GN=ABCA5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/565 (69%), Positives = 456/565 (80%), Gaps = 9/565 (1%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGDGPYW+I+YAYF IS +Y++C ++FGS IGL+FF N Y IQF+FY + IN
Sbjct: 374 IMKMHGLGDGPYWMITYAYFLAISIVYIICLMIFGSAIGLKFFRFNDYSIQFIFYFLCIN 433
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++AFLV++ FS ++TASV Y+ VFG+GLLGAFL Q +E SFPR WI MELYPG
Sbjct: 434 LQISIAFLVSSAFSKIETASVAAYLYVFGSGLLGAFLFQFLLEGLSFPRSWIYIMELYPG 493
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF Y+F+ + G+ GM W D +DS M+E+ I+ VEW + L AYY DK
Sbjct: 494 FSLYRGLYEFSQYAFKRNLNGSGGMKWKDFNDS--AMEEIFYIIIVEWFVALIAAYYTDK 551
Query: 181 ILSSGGAKGPLYFL--QNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLL 238
I SSG P +FL QN KKS S + L RQ S + + MEK DV ER +VEQL+L
Sbjct: 552 ISSSG--IDPFFFLKNQNPFKKSPSPY---GLQRQVSAIAIEMEKLDVAHERVKVEQLML 606
Query: 239 EPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298
E T HAI+ DNL+K+YP RDGNP+K+AV GLSLA+PSGECFGMLGPNGAGKT+FI+MM
Sbjct: 607 ETSTGHAIVCDNLKKVYPCRDGNPQKMAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMT 666
Query: 299 GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358
G+ + TSG A+V GLDI DMD +YTS+GVCPQ DLLWETLTGREHLLFYGRLKNLKG
Sbjct: 667 GLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLLWETLTGREHLLFYGRLKNLKGSD 726
Query: 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
L QAVEESLKSVNLF GGVADK AGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPA
Sbjct: 727 LDQAVEESLKSVNLFRGGVADKPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPA 786
Query: 419 SRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
SR +LW +KRAK AIILTTHSMEEAE LCDRLGIFVDG LQC+GNPKELKARYGGSY
Sbjct: 787 SRRSLWTAIKRAKNHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSY 846
Query: 479 VFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRF 538
V TMTT ++HE++VE + + +SP A KIY I+GTQKFE+PK+EVR+S+VFQAVE+AK F
Sbjct: 847 VLTMTTPSEHEKDVEMLVQDVSPNAKKIYHIAGTQKFEIPKEEVRISEVFQAVEKAKDNF 906
Query: 539 TVFAWGLADTTLEDVFIKVARHAQA 563
VFAWGLADTTLEDVFIKVAR AQA
Sbjct: 907 RVFAWGLADTTLEDVFIKVARTAQA 931
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/559 (69%), Positives = 455/559 (81%), Gaps = 9/559 (1%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGD PYW++SY YF IS +YMLCF +FGS+IGL FF LN Y IQ VF+ I IN
Sbjct: 350 MMKMHGLGDVPYWIVSYTYFLLISILYMLCFAIFGSLIGLNFFRLNDYSIQLVFFFICIN 409
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++AFL +A+FS+VKTA+VI YI VFGTGLLG FL Q F+EDP FPR WI AMELYPG
Sbjct: 410 LQISVAFLASAMFSDVKTATVIAYIYVFGTGLLGIFLFQFFLEDPLFPRGWIIAMELYPG 469
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYE +F G G DGM W D NGMKEV IM +EWLLLLG+AYY+D+
Sbjct: 470 FSLYRGLYELSQSAFAGDYRGIDGMKWRDFG---NGMKEVTCIMLIEWLLLLGLAYYIDQ 526
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
I+ S K PL+FL K + F + SKV V MEKPDV +ERE+VEQ LL+
Sbjct: 527 IIYS--RKHPLFFLLQSTSKKKQHFSDNKI----SKVVVEMEKPDVCREREKVEQCLLKS 580
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
A++ +NL+K+Y G+DGNP+K+AV GLSLALP GECFGMLGPNGAGKT+FI+MM GI
Sbjct: 581 TRDSAVLCNNLKKVYSGKDGNPQKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMTGI 640
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+ +SGTA+VQGLDI TDMDRIYT++GVCPQ DLLWE L+GREHLLFYGRLKNLKG LT
Sbjct: 641 IKPSSGTAFVQGLDILTDMDRIYTTIGVCPQHDLLWEKLSGREHLLFYGRLKNLKGSVLT 700
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESL+SVNLFHGG+ DKQ KYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 701 QAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 760
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+LW+VVKRAK+ AIILTTHSMEEAE LCDR+GIFVDGSLQCIGNPKELK+RYGGSYV
Sbjct: 761 KSLWDVVKRAKRKGAIILTTHSMEEAEILCDRIGIFVDGSLQCIGNPKELKSRYGGSYVL 820
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
T+TTS +HE+EVE + +S A KIY+ +GTQKFELPKQEV++ +VF+A+E+AK+ F V
Sbjct: 821 TVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEVFKALEKAKTMFPV 880
Query: 541 FAWGLADTTLEDVFIKVAR 559
AWGLADTTLEDVFIKVA+
Sbjct: 881 VAWGLADTTLEDVFIKVAQ 899
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STT8|AB4A_ARATH ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/563 (68%), Positives = 453/563 (80%), Gaps = 5/563 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGDGPYW+I+YAYF IS++Y++C ++FGS IGL+FF N Y IQF+FY + IN
Sbjct: 375 IMKMHGLGDGPYWMITYAYFLAISTLYIICLMIFGSAIGLKFFRFNDYSIQFIFYFLCIN 434
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++AFLV++ FS V+TASV Y+ VFG+GLLG FL Q +E SFPR WI MELYPG
Sbjct: 435 LQISIAFLVSSAFSKVETASVAAYLYVFGSGLLGGFLFQFMLEGLSFPRGWIFVMELYPG 494
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF Y+ + G+DGM W SDS M EV I+ +EW L L AYY+D+
Sbjct: 495 FSLYRGLYEFSQYALKRQLNGSDGMKWKYFSDS--AMDEVFYIIIIEWFLALIAAYYMDR 552
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+ SS AK P FL+N KKS S R SL R S V V MEK DV +ER +VEQL+LE
Sbjct: 553 VSSS--AKDPFLFLKNLIKKSPSPQRH-SLQRLGSSVSVEMEKLDVVEERAKVEQLMLES 609
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
TSHAI+ D L+K+YPGRDGNP K+AV GLS+A+P GECFGMLGPNGAGKT+FI+MM G+
Sbjct: 610 STSHAIVCDKLKKVYPGRDGNPPKMAVGGLSIAVPPGECFGMLGPNGAGKTSFINMMTGL 669
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+ TSGTA V+ LDI DMD++YTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG L
Sbjct: 670 VKPTSGTALVESLDICQDMDKVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSDLN 729
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QA+EESLKSVNL GVADK AGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 730 QAIEESLKSVNLSREGVADKPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 789
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+LW +K AK+ AIILTTHSMEEAE LCDRLGIFVDG LQC+GNPKELKARYGGSYV
Sbjct: 790 RSLWTAIKGAKKHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVL 849
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS++HE++VE + + +SP A KIY I+GTQKFE+PK EVR++++FQAVE+AK F V
Sbjct: 850 TMTTSSEHEKDVEMLIQDVSPNAKKIYHIAGTQKFEIPKDEVRIAELFQAVEKAKGNFRV 909
Query: 541 FAWGLADTTLEDVFIKVARHAQA 563
FAWGLADTTLEDVFIKVAR AQA
Sbjct: 910 FAWGLADTTLEDVFIKVARTAQA 932
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STT6|AB6A_ARATH ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/559 (67%), Positives = 449/559 (80%), Gaps = 5/559 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGD PYW+ISYAYF IS++Y++C ++FGS IGL+FF N Y IQF+FY +YIN
Sbjct: 370 IMKMHGLGDAPYWMISYAYFLAISTLYIVCLMIFGSAIGLKFFRFNDYTIQFMFYFLYIN 429
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++AFLV++ FS TASV+ YI VFG+GLLGAFL Q +E SFPRRWI MELYPG
Sbjct: 430 LQISIAFLVSSAFSKAVTASVVAYIYVFGSGLLGAFLFQFLIESLSFPRRWIFVMELYPG 489
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF Y+F+ + G DGM W D S M EV I+ VEW++ L YY+D+
Sbjct: 490 FSLYRGLYEFSQYAFQRNLNGRDGMKWKDFRGS--AMDEVFTIIIVEWVVALVATYYIDR 547
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+ SS +K FL+N K S + + S ++ S V V MEK DV QE+E V+QL+ E
Sbjct: 548 VSSS--SKDTFAFLKNPFKLSPTP-QMLSFQKERSDVSVEMEKLDVIQEKETVKQLIFER 604
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
+H I+ DNL+K+Y GRDGNP K+AV GLSLA+PSGECFGMLGPNGAGKT+FI+MM G+
Sbjct: 605 SKNHGIVCDNLKKVYQGRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGL 664
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+ +SG+A+VQGLDI DMD++Y SMGVCPQ DLLWETLTG+EHLLFYGRLKNLKG L
Sbjct: 665 VKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLN 724
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESLKSVNLFHGGVAD AGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 725 QAVEESLKSVNLFHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 784
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
NLW V+KRAK+ AIILTTHSMEEAE LCDRLGIFVDG LQCIGNPKELK RYGGSYV
Sbjct: 785 INLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVL 844
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
T+TTS +HE++VE++ + +S A KIY I+GTQKFE PK+EVR+S+VFQAVE AK FTV
Sbjct: 845 TITTSPEHEKDVETLVQEVSSNARKIYHIAGTQKFEFPKEEVRISEVFQAVENAKRNFTV 904
Query: 541 FAWGLADTTLEDVFIKVAR 559
FAWG ADTTLEDVFIKVA+
Sbjct: 905 FAWGFADTTLEDVFIKVAK 923
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabidopsis thaliana GN=ABCA10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/568 (65%), Positives = 448/568 (78%), Gaps = 15/568 (2%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLG GPYW+ISYAYF +S Y++ V+FGS IGLR+F LN Y +QF+FY I++N
Sbjct: 355 IMKMHGLGIGPYWMISYAYFLTLSMFYVISLVIFGSAIGLRYFRLNDYSVQFIFYFIFVN 414
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+ AFL +++FS VKTA+V+ Y VF +GLLG FL +E P+FP + I A+ELYPG
Sbjct: 415 LQISFAFLASSIFSKVKTATVVAYTLVFASGLLGMFLFGELLESPTFPEKGILALELYPG 474
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+L+RGLYEF Y+ RG +GM W DL E+GM ++ +M VEW ++L +AY +D
Sbjct: 475 FSLFRGLYEFAQYASRG-----NGMKWKDLK--ESGMDKLFYLMSVEWFVILIVAYSIDL 527
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSK-VFVSMEKPDVTQERERVEQLLLE 239
+ SSG + P F + S + RQ+S+ V + MEK DVTQERE+VE+L E
Sbjct: 528 LSSSG--RSPFVFFKKSSSLPSPSVQ-----RQNSENVLIDMEKTDVTQEREKVEKLRKE 580
Query: 240 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299
T HAI+ DNL+K+YPG DGNP K+AV GL L +PSGECFGMLGPNGAGKT+FI+MM G
Sbjct: 581 GTTGHAIVCDNLKKVYPGSDGNPPKLAVRGLYLDVPSGECFGMLGPNGAGKTSFINMMTG 640
Query: 300 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
+ + TSGTA VQGLDI DM+++YTSMGVCPQ DLLW TLTGREHLLFYGRLKN+KG AL
Sbjct: 641 LLKPTSGTALVQGLDICKDMNKVYTSMGVCPQHDLLWGTLTGREHLLFYGRLKNIKGSAL 700
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
QAVEESLKSV+LF GGVADK AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS
Sbjct: 701 MQAVEESLKSVSLFDGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 760
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
R +LW V++RAKQ AIILTTHSMEEAE LCDRLGIFVDG LQC+GNPKELK RYGGSYV
Sbjct: 761 RKDLWTVIQRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCVGNPKELKGRYGGSYV 820
Query: 480 FTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFT 539
FTMTTS +HEE+VE M K +SP + ++Y ++GTQKFE+PKQEV ++DVF VE+ KS+FT
Sbjct: 821 FTMTTSVEHEEKVERMVKHISPNSKRVYHLAGTQKFEIPKQEVMIADVFFMVEKVKSKFT 880
Query: 540 VFAWGLADTTLEDVFIKVARHAQAFEDL 567
VFAWGLADTTLEDVF KVA AQAF L
Sbjct: 881 VFAWGLADTTLEDVFFKVATTAQAFNSL 908
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54DT1|ABCA9_DICDI ABC transporter A family member 9 OS=Dictyostelium discoideum GN=abcA9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 195/586 (33%), Positives = 285/586 (48%), Gaps = 51/586 (8%)
Query: 4 MHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQI 63
M GL YW ++Y + F I I ++ V S+ G F S F+F + N I
Sbjct: 273 MMGLKIRNYWFMTYIFNFLIYFIIIVFVVGVSSIFGFAVFVKGSQFAMFLFLFAWGNSMI 332
Query: 64 ALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED--PSFPRRWITAMELYPGF 121
+F ++ F + AS+ GY V L + L +D P P WI P
Sbjct: 333 TFSFFLSTFFKKTRAASIFGYFLVIIAVNLNSILSYQVFKDSTPPVPYYWI------PLL 386
Query: 122 ALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKI 181
A YRG+ + T G D E M +++ ++++ ++ L IA Y+D++
Sbjct: 387 AFYRGMSQLST------QCGIDLCPEWSAYTWEFEMSKIIFWLYIDAIVYLLIALYLDQV 440
Query: 182 LSS--GGAKGPLYFLQN----FKKKSRSSFRKPSLGRQDSKVFVS--------------- 220
L G PL+FL+ FK K + G + F
Sbjct: 441 LPREFGVPSHPLFFLKPILNLFKNKDNDKSNTINGGSGGGRRFSETSSLINSADFDVENN 500
Query: 221 ------MEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLAL 274
+E DV +E+E + +P II + L K Y GR K +V+ L L++
Sbjct: 501 NGEQEIVEDEDVLEEKEMIINRRYDPNEMTVII-EGLTKHYVGR----PKPSVDNLYLSV 555
Query: 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL 334
GE G LG NGAGKTT ISM+ G+ TSGTA+V GLDIR DMD I+ +GV Q D+
Sbjct: 556 RKGEVLGFLGANGAGKTTTISMLTGLYTPTSGTAHVAGLDIRYDMDNIHHVIGVAMQFDI 615
Query: 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394
WE L+ E LL++ RLK + Q+VE LK VNLF V ++ + SGGMKRRLS
Sbjct: 616 FWEDLSCVETLLYFTRLKGVPPEREIQSVESILKEVNLFE--VKERLVKELSGGMKRRLS 673
Query: 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG 454
A+++ G+ ++++DEPSTG+ R +LW + K+ R+IILTTHSMEEA+ L R+
Sbjct: 674 FAVAMTGDSSIIFLDEPSTGISSELRRDLWRTINDLKKNRSIILTTHSMEEADVLSSRIA 733
Query: 455 IFVDGSLQCIGNPKELKARYGGSYVFTMTTSADH--EEEVESMAKRLSPGANKIYQISGT 512
I G LQCIG LKA++G Y + + + + SP A G+
Sbjct: 734 IISQGKLQCIGTQNHLKAKFGDGYSVRINVEEPYINTHNPTELITKFSPQAVLTESFDGS 793
Query: 513 QKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVA 558
+ PK V +SD++Q + K + W + T+LEDVF+K++
Sbjct: 794 YNYRFPKNTV-ISDLYQYLVSHKYDHHLQEWSFSQTSLEDVFLKIS 838
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8T6J0|ABCA7_DICDI ABC transporter A family member 7 OS=Dictyostelium discoideum GN=abcA7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 190/587 (32%), Positives = 294/587 (50%), Gaps = 58/587 (9%)
Query: 4 MHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGL-------RFFTLNSYGIQFVFYI 56
M GL YW++++ + F L +VV SVI L F S F+
Sbjct: 276 MMGLKMRNYWIMTFIFNF-------LTYVVIVSVISLICSAAKVSLFVKGSPFALFLLLF 328
Query: 57 IYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAME 116
++ ++ AF ++ F + AS+ GY V L + L P F W+
Sbjct: 329 LWGLSMVSFAFFLSTFFKRTRAASIFGYFFVMVMVNLNSTLSLFNTSVPVF-YYWV---- 383
Query: 117 LYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAY 176
P A RG+ G +W D E + +L +F++ ++ L +A
Sbjct: 384 --PILAFSRGISTLCGLCGNGLCPPLSQYTW----DFE--LSRILFWLFIDTIVYLTLAV 435
Query: 177 YVDKILSS--GGAKGPLYFLQNFKK--KSRSSFRKPSLG---RQDSKVF----------- 218
Y+DK+L G PL+F+++ K+ + +RK G + +K+
Sbjct: 436 YLDKVLPREFGVPSHPLFFIKDLKELFSKKGKYRKLRDGDGINEKTKLINEYTIDGINND 495
Query: 219 ---VSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALP 275
+ DV +ER+ + + P +I LRK +PGR K A++ L L++
Sbjct: 496 DDDDGLMDEDVKKERDMIVKGEYNP-EEMTLIVQGLRKQFPGR----PKPALSNLYLSVK 550
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
GE G LGPNGAGKTT IS++ G+ TSGTA++ GLDIR DMD+I+ +GV Q D+L
Sbjct: 551 KGEVLGYLGPNGAGKTTSISILTGLYTPTSGTAHIAGLDIRYDMDKIHQVIGVVMQFDVL 610
Query: 336 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395
WE LT E +L+Y RLK ++ LK VNL V D+ + SGGMKRRLS
Sbjct: 611 WEDLTCEETILYYTRLKGTPKSIEFESTHNILKEVNLLD--VKDRFVKELSGGMKRRLSF 668
Query: 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455
AI++ G ++++DEP+TGL +R +LW + K+ R+IILTTHSM+EA+ L DR+ I
Sbjct: 669 AIAMTGESSIIFLDEPTTGLSIETRKDLWGTINELKKNRSIILTTHSMQEADILSDRIAI 728
Query: 456 FVDGSLQCIGNPKELKARYGGSYVFTMTTSADHE--EEVESMAKRLSPGANKIYQISGTQ 513
G LQCIG LK ++G Y + D++ + K SP A +G+
Sbjct: 729 VSQGKLQCIGTQTHLKQKFGDGYSVRIDIQEDYQNTHNPTDLIKSFSPSATLSETFNGSY 788
Query: 514 KFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARH 560
+ LPK + +SD+++ + K ++ + W L+ T+LEDVF+K++ +
Sbjct: 789 VYRLPKDSI-ISDLYEYLVLNKEQYHLQEWSLSQTSLEDVFLKISAN 834
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | ||||||
| 297734006 | 928 | unnamed protein product [Vitis vinifera] | 0.998 | 0.610 | 0.831 | 0.0 | |
| 225456715 | 949 | PREDICTED: ABC transporter A family memb | 0.998 | 0.597 | 0.831 | 0.0 | |
| 449440768 | 947 | PREDICTED: ABC transporter A family memb | 0.998 | 0.598 | 0.791 | 0.0 | |
| 255540959 | 984 | abc transporter, putative [Ricinus commu | 0.998 | 0.576 | 0.795 | 0.0 | |
| 356508588 | 949 | PREDICTED: ABC transporter A family memb | 0.996 | 0.596 | 0.793 | 0.0 | |
| 224121524 | 939 | ABC transporter family, cholesterol/phos | 0.998 | 0.603 | 0.777 | 0.0 | |
| 224124050 | 911 | ABC transporter family, cholesterol/phos | 0.998 | 0.622 | 0.774 | 0.0 | |
| 255540957 | 902 | abc transporter, putative [Ricinus commu | 0.987 | 0.621 | 0.736 | 0.0 | |
| 356513540 | 949 | PREDICTED: ABC transporter A family memb | 0.994 | 0.595 | 0.746 | 0.0 | |
| 357477513 | 943 | ABC transporter A family member [Medicag | 0.998 | 0.601 | 0.734 | 0.0 |
| >gi|297734006|emb|CBI15253.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/570 (83%), Positives = 514/570 (90%), Gaps = 3/570 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISYAYF ISSIYMLCFV+FGSVIGL+FFTLN Y IQ VFY IYIN
Sbjct: 358 MMKMHGLGDGPYWMISYAYFLVISSIYMLCFVIFGSVIGLKFFTLNDYSIQLVFYFIYIN 417
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFL+AA FSNVKTA+V+GYICVFGTGLLG FL Q F++D SFP WI MELYPG
Sbjct: 418 LQISLAFLLAAAFSNVKTATVLGYICVFGTGLLGGFLFQFFIQDTSFPNGWIIVMELYPG 477
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF YSF G+ MGTDGM W DLSDS NGM++VLIIMFVEWL++L +AYY+D+
Sbjct: 478 FSLYRGLYEFAQYSFTGNYMGTDGMRWGDLSDSTNGMRDVLIIMFVEWLIVLFVAYYIDQ 537
Query: 181 ILSSGGA--KGPLYFLQNF-KKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLL 237
+LSSG + PL+FLQNF KKK SSFRKPSL RQ SKVFV MEK DV+QERE+VEQLL
Sbjct: 538 VLSSGNGVKRSPLFFLQNFRKKKPMSSFRKPSLKRQGSKVFVKMEKADVSQEREKVEQLL 597
Query: 238 LEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
LE G +HAII DNLRK+YPGRDGNPEK+AV GLSLAL GECFGMLGPNGAGKT+FISMM
Sbjct: 598 LESGANHAIICDNLRKVYPGRDGNPEKIAVKGLSLALSHGECFGMLGPNGAGKTSFISMM 657
Query: 298 IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 357
IG+T TSGTA+V+GLDIR DMD IYTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG
Sbjct: 658 IGLTVPTSGTAFVEGLDIRIDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGA 717
Query: 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417
ALTQAVEESLKSVNLFHGGV DKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDP
Sbjct: 718 ALTQAVEESLKSVNLFHGGVGDKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDP 777
Query: 418 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 477
ASRNNLWNVVKRAKQGRAIILTTHSMEEAE LCDRLGIFVDGSLQCIGNPKELKARYGGS
Sbjct: 778 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGS 837
Query: 478 YVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSR 537
YVFTMTTS++HEEEVE++ ++LSP NKIYQISGTQKFELPKQEVR++DVFQAVE AKSR
Sbjct: 838 YVFTMTTSSNHEEEVENLVRQLSPNTNKIYQISGTQKFELPKQEVRIADVFQAVENAKSR 897
Query: 538 FTVFAWGLADTTLEDVFIKVARHAQAFEDL 567
FTV AWGLADTTLEDVFIKVAR AQAF+ L
Sbjct: 898 FTVQAWGLADTTLEDVFIKVARGAQAFDVL 927
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456715|ref|XP_002274303.1| PREDICTED: ABC transporter A family member 7 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/570 (83%), Positives = 514/570 (90%), Gaps = 3/570 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISYAYF ISSIYMLCFV+FGSVIGL+FFTLN Y IQ VFY IYIN
Sbjct: 379 MMKMHGLGDGPYWMISYAYFLVISSIYMLCFVIFGSVIGLKFFTLNDYSIQLVFYFIYIN 438
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFL+AA FSNVKTA+V+GYICVFGTGLLG FL Q F++D SFP WI MELYPG
Sbjct: 439 LQISLAFLLAAAFSNVKTATVLGYICVFGTGLLGGFLFQFFIQDTSFPNGWIIVMELYPG 498
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYEF YSF G+ MGTDGM W DLSDS NGM++VLIIMFVEWL++L +AYY+D+
Sbjct: 499 FSLYRGLYEFAQYSFTGNYMGTDGMRWGDLSDSTNGMRDVLIIMFVEWLIVLFVAYYIDQ 558
Query: 181 ILSSGGA--KGPLYFLQNF-KKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLL 237
+LSSG + PL+FLQNF KKK SSFRKPSL RQ SKVFV MEK DV+QERE+VEQLL
Sbjct: 559 VLSSGNGVKRSPLFFLQNFRKKKPMSSFRKPSLKRQGSKVFVKMEKADVSQEREKVEQLL 618
Query: 238 LEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
LE G +HAII DNLRK+YPGRDGNPEK+AV GLSLAL GECFGMLGPNGAGKT+FISMM
Sbjct: 619 LESGANHAIICDNLRKVYPGRDGNPEKIAVKGLSLALSHGECFGMLGPNGAGKTSFISMM 678
Query: 298 IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 357
IG+T TSGTA+V+GLDIR DMD IYTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG
Sbjct: 679 IGLTVPTSGTAFVEGLDIRIDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGA 738
Query: 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417
ALTQAVEESLKSVNLFHGGV DKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDP
Sbjct: 739 ALTQAVEESLKSVNLFHGGVGDKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDP 798
Query: 418 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 477
ASRNNLWNVVKRAKQGRAIILTTHSMEEAE LCDRLGIFVDGSLQCIGNPKELKARYGGS
Sbjct: 799 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGS 858
Query: 478 YVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSR 537
YVFTMTTS++HEEEVE++ ++LSP NKIYQISGTQKFELPKQEVR++DVFQAVE AKSR
Sbjct: 859 YVFTMTTSSNHEEEVENLVRQLSPNTNKIYQISGTQKFELPKQEVRIADVFQAVENAKSR 918
Query: 538 FTVFAWGLADTTLEDVFIKVARHAQAFEDL 567
FTV AWGLADTTLEDVFIKVAR AQAF+ L
Sbjct: 919 FTVQAWGLADTTLEDVFIKVARGAQAFDVL 948
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440768|ref|XP_004138156.1| PREDICTED: ABC transporter A family member 7-like [Cucumis sativus] gi|449477292|ref|XP_004154983.1| PREDICTED: ABC transporter A family member 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/567 (79%), Positives = 499/567 (88%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYWLISYAYF IS+IY+LCFV+FGSVIGL+FF LN Y IQFVFY +YIN
Sbjct: 380 MMKMHGLGDGPYWLISYAYFLTISAIYILCFVIFGSVIGLKFFRLNDYSIQFVFYFLYIN 439
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFL AA FSNVKTA+VI YI VFGTGLLG FL Q F+EDPSFP WI +EL+PG
Sbjct: 440 LQISLAFLTAAWFSNVKTAAVIAYILVFGTGLLGGFLFQFFLEDPSFPNAWIIVLELFPG 499
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
FALYRGLYEF YSF G+ MGTDGM W +LSD NGM++V IIM VEWLL++ +AYY+D+
Sbjct: 500 FALYRGLYEFAQYSFTGNFMGTDGMRWGNLSDKSNGMRDVFIIMVVEWLLVILVAYYLDQ 559
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
I SSGG K PL+FL+ F+KK+ +SFR PSL +Q SKVFV ME+ DV QERE+VEQLLL+P
Sbjct: 560 ISSSGGGKSPLFFLRRFRKKAAASFRLPSLRKQGSKVFVQMEQSDVIQEREKVEQLLLDP 619
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
SHAI+ DNL+K+YPGRDGNPEK AV GLSLA+P GECFGMLGPNGAGKT+FISMMIG+
Sbjct: 620 DASHAIVCDNLKKVYPGRDGNPEKFAVKGLSLAVPRGECFGMLGPNGAGKTSFISMMIGL 679
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T+ ++G AYVQG+DIR DMDRIYTSMGVCPQ DLLWE LTGREHLLFYGRLK L+G ALT
Sbjct: 680 TKPSAGAAYVQGMDIRRDMDRIYTSMGVCPQHDLLWEQLTGREHLLFYGRLKKLRGSALT 739
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+AVEESLK VNL+HGG+ADKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 740 EAVEESLKGVNLYHGGIADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASR 799
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
N+LWNVVK AKQ RAIILTTHSMEEAE LCDRLGIFVDG LQCIGNPKELK RYGGSYVF
Sbjct: 800 NSLWNVVKHAKQDRAIILTTHSMEEAEVLCDRLGIFVDGGLQCIGNPKELKGRYGGSYVF 859
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTSA+HE +VE+M K LSP A+KIY ISGTQKFELPKQEVR+ DVFQAVE AKSRFTV
Sbjct: 860 TMTTSANHEVDVENMVKNLSPNASKIYHISGTQKFELPKQEVRIGDVFQAVENAKSRFTV 919
Query: 541 FAWGLADTTLEDVFIKVARHAQAFEDL 567
FAWGLADTTLEDVFIKVAR AQ+F L
Sbjct: 920 FAWGLADTTLEDVFIKVARGAQSFNTL 946
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540959|ref|XP_002511544.1| abc transporter, putative [Ricinus communis] gi|223550659|gb|EEF52146.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/567 (79%), Positives = 505/567 (89%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISYAYF IS +Y+L FV+FGSVIGL+FF LN Y IQFVFY IYIN
Sbjct: 417 MMKMHGLGDGPYWMISYAYFLSISLLYVLVFVIFGSVIGLKFFRLNDYSIQFVFYFIYIN 476
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI AFLVAALFSNVKTA+V+ YICVFGTGLLG FL Q+F+ED SFPR WI +ELYPG
Sbjct: 477 LQITFAFLVAALFSNVKTATVVAYICVFGTGLLGGFLFQNFLEDSSFPRGWIIVLELYPG 536
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F LYRGLYEF Y+F G++MGTDGM W DLSD +NGMK+VLIIM +EWL+ L +A+Y+D+
Sbjct: 537 FTLYRGLYEFSEYAFTGNAMGTDGMRWGDLSDGKNGMKDVLIIMTIEWLVGLFVAFYIDQ 596
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+ SSG +K PL+FLQNF+KK SFR+PSL RQ SKVFV M+KPDVTQERE+VEQLLLEP
Sbjct: 597 VSSSGSSKSPLFFLQNFRKKRPISFRRPSLRRQGSKVFVDMDKPDVTQEREKVEQLLLEP 656
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
T+HAI+ DNL+K+YPGRDGNPEK+AV GLSLALP GECFGMLGPNGAGKT+FISMMIG+
Sbjct: 657 NTTHAIVCDNLKKVYPGRDGNPEKLAVRGLSLALPPGECFGMLGPNGAGKTSFISMMIGL 716
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T+ TSG AYVQGLDI+T MD IYTSMGVCPQ DLLWETLTGREHLLFYGRLKNL+GPALT
Sbjct: 717 TKPTSGAAYVQGLDIQTRMDWIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGPALT 776
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESL+SVNLF+ GVADKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 777 QAVEESLRSVNLFNSGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASR 836
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+NLWNVVKRAKQGRAIILTTHSMEEA+ALCDRLG+FVDGSLQCIGNPKELKARYGGSYVF
Sbjct: 837 SNLWNVVKRAKQGRAIILTTHSMEEADALCDRLGVFVDGSLQCIGNPKELKARYGGSYVF 896
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTSA+ E+EV +M ++LSP A + YQ SGTQKFE+PKQEVR++DVF AVE KSRF V
Sbjct: 897 TMTTSAESEQEVVNMVQQLSPNAIRTYQTSGTQKFEMPKQEVRIADVFHAVETVKSRFPV 956
Query: 541 FAWGLADTTLEDVFIKVARHAQAFEDL 567
FAWGL+DTTLEDVFIKVA AQ F L
Sbjct: 957 FAWGLSDTTLEDVFIKVANEAQPFSVL 983
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508588|ref|XP_003523037.1| PREDICTED: ABC transporter A family member 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/567 (79%), Positives = 497/567 (87%), Gaps = 1/567 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGL DGPYW+ISY YF IS +YMLCFV+FGSVIGL FFT+N Y IQ VFY IYIN
Sbjct: 383 MMKMHGLDDGPYWMISYGYFLAISIVYMLCFVIFGSVIGLNFFTMNDYSIQSVFYFIYIN 442
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFL+A+LFSNVKTA+V+ YI +FGTGLL F FV+D SFPR WI MELYPG
Sbjct: 443 LQISLAFLLASLFSNVKTATVLAYIGMFGTGLLADFPFHFFVQDTSFPRGWIIVMELYPG 502
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
FALYRGLYEF Y+F G ++GTDGM W+DLSDS NGMKEVLIIMFVEWLL+L AYY+D+
Sbjct: 503 FALYRGLYEFSQYAFSGDALGTDGMRWSDLSDSTNGMKEVLIIMFVEWLLVLLFAYYIDQ 562
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+LSSG K PL FL+ F+KK SSFRKPS+ RQ SKVFV +EKPDVTQERE+VE+LLLE
Sbjct: 563 VLSSGCRKSPL-FLKRFQKKPHSSFRKPSIQRQKSKVFVQIEKPDVTQEREKVEELLLES 621
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
+ AI+ DN+RK+YPGRDGNPEK+AV GLSLALP GECFGMLGPNGAGKT+FI+MMIG+
Sbjct: 622 TINQAIVCDNMRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGL 681
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T+ TSGTAYVQGLD+RT MD IYTSMGVCPQ DLLWE+LTGREHLLFYGRLKNLKG ALT
Sbjct: 682 TKPTSGTAYVQGLDLRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALT 741
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASR 801
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
NLWNVVKRAKQ RAIILTTHSMEEAE LCDRLGIFVDG LQCIGNPKELKARYGG+YVF
Sbjct: 802 KNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGGLQCIGNPKELKARYGGTYVF 861
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS DHE +VE++ ++L P ANKIY ISGTQKFELPK EV++++VFQAVE AK FTV
Sbjct: 862 TMTTSIDHENDVENLVRQLFPNANKIYHISGTQKFELPKDEVKIANVFQAVETAKRSFTV 921
Query: 541 FAWGLADTTLEDVFIKVARHAQAFEDL 567
AWGLADTTLEDVFIKVAR AQAF L
Sbjct: 922 SAWGLADTTLEDVFIKVARGAQAFNTL 948
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121524|ref|XP_002318606.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] gi|222859279|gb|EEE96826.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/567 (77%), Positives = 496/567 (87%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISY YF IS++YM FV FGS++GL+FFTLN Y IQF+FY +YIN
Sbjct: 372 MMKMHGLGDGPYWMISYMYFLAISALYMFVFVAFGSIVGLKFFTLNDYFIQFLFYFLYIN 431
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFLV+A FSNVKTA+V+GYICVFGTGLLG FL QSFVED SFP+ WI MELYPG
Sbjct: 432 LQISLAFLVSAFFSNVKTATVVGYICVFGTGLLGGFLFQSFVEDTSFPKGWIIFMELYPG 491
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
FALYRGLYEF YS +G+SMGTDGM W +LSDSENGM +V+IIM +EWL +L IAYYVD+
Sbjct: 492 FALYRGLYEFAEYSLQGNSMGTDGMKWGNLSDSENGMSDVMIIMLLEWLAVLCIAYYVDQ 551
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
I +SG K P Y LQ F+KK SSF+KPSLGRQ SKVFV M+KPDV QERE+VEQ+LLEP
Sbjct: 552 IFASGSGKNPKYLLQKFRKKRPSSFQKPSLGRQASKVFVDMDKPDVIQEREKVEQILLEP 611
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
T+H+I+ DNLRK+YPGRDGNPEK+AV GLSLA+P GECFGMLGPNGAGKT+FISMMIG+
Sbjct: 612 TTTHSIVCDNLRKVYPGRDGNPEKLAVRGLSLAIPRGECFGMLGPNGAGKTSFISMMIGL 671
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T ++GTAYV+GLDIRT MD +YTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG AL
Sbjct: 672 TTPSTGTAYVEGLDIRTQMDWVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGAALK 731
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+AVE+SLKSVNLF+GGVADKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 732 KAVEDSLKSVNLFNGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASR 791
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+NLWNVVKRAKQ RAIILTTHSMEEAE LCDRLGIFV G LQC+GNPKELKARYGGSYVF
Sbjct: 792 SNLWNVVKRAKQDRAIILTTHSMEEAEYLCDRLGIFVSGGLQCVGNPKELKARYGGSYVF 851
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS + E EVE M +RLSP A + Y ++GTQKFE+PK EV ++DVF AVE AKSRF V
Sbjct: 852 TMTTSINDEHEVERMVQRLSPNAERTYHMAGTQKFEMPKHEVSMADVFHAVEVAKSRFPV 911
Query: 541 FAWGLADTTLEDVFIKVARHAQAFEDL 567
+AWGL+DTTLEDVFIKVA AQ F L
Sbjct: 912 YAWGLSDTTLEDVFIKVANSAQEFHTL 938
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124050|ref|XP_002330092.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] gi|222871226|gb|EEF08357.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/567 (77%), Positives = 496/567 (87%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISY YF IS++YM FV FGS++GL+FFTLN Y IQFVFY +YIN
Sbjct: 344 MMKMHGLGDGPYWMISYMYFLVISALYMFVFVAFGSLVGLKFFTLNDYSIQFVFYFLYIN 403
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI+LAFL +A FSNVKTA+V+GYICVFGTGLLG FL Q+FVED SFP+ W+ MELYPG
Sbjct: 404 LQISLAFLASAFFSNVKTATVVGYICVFGTGLLGGFLFQNFVEDTSFPKGWVIFMELYPG 463
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
FALYRGLYEF YS G SMGTDGM W +LS SENGM++V+IIM +EWL LL +AYYVD+
Sbjct: 464 FALYRGLYEFAEYSSSGTSMGTDGMKWGNLSASENGMRDVMIIMLLEWLALLFVAYYVDQ 523
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+ SSG K P Y LQ F+KK SSFRKPS+GRQ SKVFV M+KPDV QERE+VEQLLLEP
Sbjct: 524 VFSSGSGKNPKYLLQKFRKKRPSSFRKPSMGRQGSKVFVDMDKPDVIQEREKVEQLLLEP 583
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
TSH+I+ DNLRK+YPGRDGN EK+AV GLSLA+P GECFGMLGPNGAGKT+FISMMIG+
Sbjct: 584 TTSHSIVCDNLRKVYPGRDGNAEKLAVRGLSLAIPRGECFGMLGPNGAGKTSFISMMIGL 643
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T T+GTAYV+GLDIRT+MD +YTSMGVCPQ DLLWETLTGREHLLFYGRLKNL+G AL
Sbjct: 644 TTPTTGTAYVEGLDIRTEMDWVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGAALK 703
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+AVEESL+SVNLF+GGVADK+AGKYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 704 RAVEESLRSVNLFNGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASR 763
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+NLWNVVKRAKQ RAIILTTHSMEEAE LCDRLGIFVDGSLQC+GNPKEL+ RYGGSYVF
Sbjct: 764 SNLWNVVKRAKQDRAIILTTHSMEEAEYLCDRLGIFVDGSLQCVGNPKELRGRYGGSYVF 823
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS + E EVE M RLSP A + YQ++GTQKFE+PK+E+ ++DVFQAVE AKSRF V
Sbjct: 824 TMTTSVNDEHEVEQMVLRLSPSAERTYQMAGTQKFEMPKEEISIADVFQAVEVAKSRFPV 883
Query: 541 FAWGLADTTLEDVFIKVARHAQAFEDL 567
+AWGL+DTTLEDVFIKVA AQ F L
Sbjct: 884 YAWGLSDTTLEDVFIKVANSAQHFHTL 910
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540957|ref|XP_002511543.1| abc transporter, putative [Ricinus communis] gi|223550658|gb|EEF52145.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/561 (73%), Positives = 486/561 (86%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISYAYF IS +YML FV+FGS +GL+ F +N Y IQFVFY +YIN
Sbjct: 342 MMKMHGLGDGPYWMISYAYFLVISLLYMLVFVIFGSSVGLKIFYMNDYSIQFVFYFLYIN 401
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++ FL+AALFS VKTA+V+GY+CV+GTGLL ++L Q+F+E SFPR I +E+YPG
Sbjct: 402 LQISMGFLLAALFSYVKTATVVGYLCVYGTGLLASYLFQNFLEQTSFPRGLIIVLEIYPG 461
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYE YS RG ++G +GM W +L+D +NGM+EVLIIMFVEWL +L + YY+D+
Sbjct: 462 FSLYRGLYELARYSSRGIALGINGMQWGNLNDKDNGMREVLIIMFVEWLAVLFVGYYIDR 521
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+LSSG K PL+FLQNF KK +SSF KP+L RQ SKV + M+KPD++QERE+VEQLLLEP
Sbjct: 522 VLSSGSIKSPLFFLQNFGKKRQSSFMKPNLQRQGSKVLIDMDKPDISQEREKVEQLLLEP 581
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
SH II DNL+K+YPGRDGNP+K+AV GL+LALP GECFGMLGPNGAGKT+FISMM+G+
Sbjct: 582 SISHLIICDNLKKLYPGRDGNPDKMAVRGLTLALPPGECFGMLGPNGAGKTSFISMMVGL 641
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T+ TSGTAY+QGLDIRT MDRIYTS+GVCPQ DLLWETLTGREHLLFYGRLKNLKG L
Sbjct: 642 TKQTSGTAYIQGLDIRTQMDRIYTSIGVCPQHDLLWETLTGREHLLFYGRLKNLKGSVLK 701
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAV++SLKSV LF GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS+GLDPA+R
Sbjct: 702 QAVQDSLKSVKLFDGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSSGLDPATR 761
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
NLWNV+KRAKQ RAIILTTHSMEEAEALCDRLG+FVDGS +CIGN KELKARYGGSY+F
Sbjct: 762 RNLWNVIKRAKQDRAIILTTHSMEEAEALCDRLGVFVDGSFRCIGNAKELKARYGGSYLF 821
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
T+TTS+DHE++V +M + LSP A + Y SGTQKFE+PK EVR++DVF AVE AK+RF +
Sbjct: 822 TLTTSSDHEQQVVNMVQGLSPNAERTYHTSGTQKFEIPKHEVRIADVFHAVEIAKTRFPI 881
Query: 541 FAWGLADTTLEDVFIKVARHA 561
FAWGL+DTTLEDVFI VA A
Sbjct: 882 FAWGLSDTTLEDVFINVANDA 902
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513540|ref|XP_003525471.1| PREDICTED: ABC transporter A family member 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/567 (74%), Positives = 486/567 (85%), Gaps = 2/567 (0%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+ISY YF IS IYMLCFV+FGS++GL+ FT+N Y IQFVFY IYIN
Sbjct: 384 MMKMHGLGDGPYWMISYGYFLAISIIYMLCFVIFGSLLGLKIFTINDYSIQFVFYFIYIN 443
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQIALAFLVA++FSNVKTA+V YI VFGTGLL FL Q FV++ SFPR WI MELYPG
Sbjct: 444 LQIALAFLVASIFSNVKTATVTAYIGVFGTGLLAGFLFQFFVQNTSFPRGWIIVMELYPG 503
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
FALYRGLYE +SF G S T GM W +LS+S NGMKEVLIIMFVEW+++L A+YVD+
Sbjct: 504 FALYRGLYELAQFSFEGSSSETGGMKWQNLSESTNGMKEVLIIMFVEWIMMLFAAFYVDQ 563
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+LSSG KGPL+FL+ F+K R F+K SKVF MEKPDV QE+E+VEQLLLEP
Sbjct: 564 VLSSGSRKGPLFFLKGFQK--RPPFQKLDAQMPVSKVFSQMEKPDVIQEKEKVEQLLLEP 621
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
+HAI+ D+L+K+YPGRDGNP+K AV GL L++P GECFGMLGPNGAGKT+FI+MMIG+
Sbjct: 622 TINHAIVCDDLKKVYPGRDGNPDKYAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGL 681
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T+ TSG A+VQGLDIRT MD IYT+MGVCPQ DLLWE+LTGREHL FYGRLKNLKG LT
Sbjct: 682 TKPTSGMAFVQGLDIRTQMDGIYTTMGVCPQHDLLWESLTGREHLFFYGRLKNLKGSVLT 741
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
Q VEESL+S+NLFHGGVADKQ GKYSGGMKRRLSVAISLIG+P+VVYMDEPS+GLDPASR
Sbjct: 742 QEVEESLESLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPRVVYMDEPSSGLDPASR 801
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
NLWNVVK AKQ RAIILTTHSMEEAEALCDRLGIFV+G+LQC+GN KELKARYGG+YVF
Sbjct: 802 KNLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGNLQCVGNAKELKARYGGTYVF 861
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS+DHE++VE+M ++L+P ANKIY +SGTQKFELPK +VR++DVFQAV+ AK FTV
Sbjct: 862 TMTTSSDHEKDVENMVQKLTPNANKIYHLSGTQKFELPKGDVRITDVFQAVDAAKRNFTV 921
Query: 541 FAWGLADTTLEDVFIKVARHAQAFEDL 567
AWGL DTTLEDVFIKVAR AQAF+ L
Sbjct: 922 SAWGLVDTTLEDVFIKVAREAQAFDTL 948
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477513|ref|XP_003609042.1| ABC transporter A family member [Medicago truncatula] gi|355510097|gb|AES91239.1| ABC transporter A family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/576 (73%), Positives = 487/576 (84%), Gaps = 9/576 (1%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGDGPYW+I+Y YF +S IYMLCFV+FGSV+GL+FFTLN Y IQFVFY IYIN
Sbjct: 367 MMKMHGLGDGPYWMITYGYFLALSVIYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYIN 426
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++A L+A+ FSNVKTA+V YI VFGTGLL FLLQ F++D SFPR WI MELYPG
Sbjct: 427 LQISVAILLASFFSNVKTATVTAYIGVFGTGLLAGFLLQFFIQDSSFPRGWIICMELYPG 486
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
FALYRGLYEFG + G +MGT GM W DLSDS NGMKEVLIIMF EW+++L +AYY+D+
Sbjct: 487 FALYRGLYEFGQSATSGSNMGTVGMRWQDLSDSANGMKEVLIIMFAEWIIVLFVAYYIDQ 546
Query: 181 ILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEP 240
+ S+G K ++FL+ F KK SS +K S+ RQ+S V MEKPD+ QE+E+VEQLLLEP
Sbjct: 547 VSSTGSGKSTIFFLKGFLKKPLSSCKKLSIQRQESNVLAQMEKPDIVQEKEKVEQLLLEP 606
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
HAI+ D L+K Y GRDGNP K+AV L LA+P GECFGMLGPNGAGKT+FISMMIG+
Sbjct: 607 TIDHAIVCDGLKKFYRGRDGNPGKLAVRELFLAVPRGECFGMLGPNGAGKTSFISMMIGL 666
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
T+ TSG AYVQGLDIRT MD IYTSMGVCPQ +LLWE+LTGREHLLFYGRLKNLKG LT
Sbjct: 667 TKPTSGAAYVQGLDIRTHMDGIYTSMGVCPQHNLLWESLTGREHLLFYGRLKNLKGSVLT 726
Query: 361 Q---------AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
Q AVEESLK++NLFHGGVADKQAGKYSGGMKRRLSVAISLIG+PKVVYMDEP
Sbjct: 727 QVSSFCKNSCAVEESLKNLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEP 786
Query: 412 STGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
STGLDPASR LWNV++ AKQ RAIILTTHSMEEAEALCDRLGIFV+GSLQC+GNPKELK
Sbjct: 787 STGLDPASRKCLWNVIRLAKQDRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNPKELK 846
Query: 472 ARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAV 531
ARYGG YVFTMTTS+DHE++VE++ ++L+P ANKIY +SGTQKFELPK++V++++VFQAV
Sbjct: 847 ARYGGIYVFTMTTSSDHEKDVENIVQQLTPNANKIYHLSGTQKFELPKEDVKIANVFQAV 906
Query: 532 EEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFEDL 567
E AK FTVFAWGLADTTLEDVFIKVAR A AF+ L
Sbjct: 907 EVAKRNFTVFAWGLADTTLEDVFIKVAREAHAFDTL 942
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | ||||||
| TAIR|locus:2100322 | 935 | ABCA7 "ATP-binding cassette A7 | 0.984 | 0.597 | 0.725 | 3e-220 | |
| TAIR|locus:2100337 | 901 | ABCA8 "ATP-binding cassette A8 | 0.968 | 0.610 | 0.679 | 3e-204 | |
| DICTYBASE|DDB_G0291980 | 845 | abcA9 "ABC transporter A famil | 0.538 | 0.362 | 0.415 | 2.3e-74 | |
| DICTYBASE|DDB_G0271140 | 839 | abcA7 "ABC transporter A famil | 0.538 | 0.364 | 0.419 | 8.6e-71 | |
| TAIR|locus:2100367 | 983 | ABCA2 "ATP-binding cassette A2 | 0.519 | 0.300 | 0.407 | 5.3e-68 | |
| TAIR|locus:2054366 | 1882 | ABCA1 "ATP-binding cassette A1 | 0.433 | 0.130 | 0.454 | 4.4e-66 | |
| UNIPROTKB|E1BVQ5 | 1706 | ABCA3 "Uncharacterized protein | 0.559 | 0.186 | 0.389 | 7.5e-64 | |
| RGD|1305981 | 835 | Abca15 "ATP-binding cassette, | 0.533 | 0.362 | 0.388 | 1.7e-63 | |
| UNIPROTKB|F1Q1F1 | 1702 | ABCA3 "Uncharacterized protein | 0.545 | 0.182 | 0.390 | 1.5e-62 | |
| ZFIN|ZDB-GENE-050517-1 | 2503 | abca2 "ATP-binding cassette, s | 0.542 | 0.123 | 0.402 | 3.1e-62 |
| TAIR|locus:2100322 ABCA7 "ATP-binding cassette A7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2127 (753.8 bits), Expect = 3.0e-220, P = 3.0e-220
Identities = 409/564 (72%), Positives = 457/564 (81%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+MKMHGLGDGPYW+ISYAYF IS +Y++C ++FGS IGL+FF LNSY IQFVFY +Y+N
Sbjct: 373 IMKMHGLGDGPYWMISYAYFLTISVLYVICLMIFGSAIGLKFFRLNSYSIQFVFYFLYLN 432
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQIALAFLV+++FS VKT++V YI VFG+GLLG FLL +ED SFPR WI MELYPG
Sbjct: 433 LQIALAFLVSSVFSKVKTSTVASYIYVFGSGLLGLFLLNFLIEDSSFPRGWIIVMELYPG 492
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYE ++FRG+ G DGM W D DS M +V I+ VEW L L AYY+DK
Sbjct: 493 FSLYRGLYELAQFAFRGNLRGEDGMKWKDFGDS--AMDDVFYIIVVEWFLALIAAYYIDK 550
Query: 181 ILSSGGAKGPLYFLQNXXXXXXXXXXXXXLGRQDSKVFVSMEKPDVTXXXXXXXXXXXXP 240
I SSG + PL+FLQN L RQ SKV V MEKPDVT
Sbjct: 551 ISSSG--RNPLFFLQNPFKKSPSLRRPS-LQRQGSKVSVDMEKPDVTHESKKVERLMLES 607
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
TSHAI+ DNL+K+YPGRDGNP K+AV GLSLA+PSGECFGMLGPNGAGKT+FI+MM G+
Sbjct: 608 STSHAIVCDNLKKVYPGRDGNPPKLAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGL 667
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+ TSGTA VQGLDI DMDR+YTSMGVCPQ DLLWETLTGREHLLFYGRLKNLKG L
Sbjct: 668 LKPTSGTALVQGLDICNDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGADLN 727
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESLKSVNLFHGGVADK AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR
Sbjct: 728 QAVEESLKSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 787
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
NLW V+KRAKQ AIILTTHSMEEAE LCDRLGIFVDG LQCIGNPKELK RYGGSYVF
Sbjct: 788 KNLWTVIKRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNPKELKGRYGGSYVF 847
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
TMTTS++HE+ VE + K +SP A KIY I+GTQKFELPK+EVR+S+VFQAVE+AKS FTV
Sbjct: 848 TMTTSSEHEQNVEKLIKDVSPNAKKIYHIAGTQKFELPKEEVRISEVFQAVEKAKSNFTV 907
Query: 541 FAWGLADTTLEDVFIKVARHAQAF 564
FAWGLADTTLEDVFIKV R+ QAF
Sbjct: 908 FAWGLADTTLEDVFIKVVRNGQAF 931
|
|
| TAIR|locus:2100337 ABCA8 "ATP-binding cassette A8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1976 (700.6 bits), Expect = 3.0e-204, P = 3.0e-204
Identities = 380/559 (67%), Positives = 441/559 (78%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
MMKMHGLGD PYW++SY YF IS +YMLCF +FGS+IGL FF LN Y IQ VF+ I IN
Sbjct: 350 MMKMHGLGDVPYWIVSYTYFLLISILYMLCFAIFGSLIGLNFFRLNDYSIQLVFFFICIN 409
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
LQI++AFL +A+FS+VKTA+VI YI VFGTGLLG FL Q F+EDP FPR WI AMELYPG
Sbjct: 410 LQISVAFLASAMFSDVKTATVIAYIYVFGTGLLGIFLFQFFLEDPLFPRGWIIAMELYPG 469
Query: 121 FALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDK 180
F+LYRGLYE +F G G DGM W D NGMKEV IM +EWLLLLG+AYY+D+
Sbjct: 470 FSLYRGLYELSQSAFAGDYRGIDGMKWRDFG---NGMKEVTCIMLIEWLLLLGLAYYIDQ 526
Query: 181 ILSSGGAKGPLYFLQNXXXXXXXXXXXXXLGRQDSKVFVSMEKPDVTXXXXXXXXXXXXP 240
I+ S K PL+FL + SKV V MEKPDV
Sbjct: 527 IIYS--RKHPLFFLLQSTSKKKQHFSDNKI----SKVVVEMEKPDVCREREKVEQCLLKS 580
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
A++ +NL+K+Y G+DGNP+K+AV GLSLALP GECFGMLGPNGAGKT+FI+MM GI
Sbjct: 581 TRDSAVLCNNLKKVYSGKDGNPQKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMTGI 640
Query: 301 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+ +SGTA+VQGLDI TDMDRIYT++GVCPQ DLLWE L+GREHLLFYGRLKNLKG LT
Sbjct: 641 IKPSSGTAFVQGLDILTDMDRIYTTIGVCPQHDLLWEKLSGREHLLFYGRLKNLKGSVLT 700
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
QAVEESL+SVNLFHGG+ DKQ KYSGGMKRRLSVAISLIG+PKVVYMDEPSTGLDPASR
Sbjct: 701 QAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 760
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+LW+VVKRAK+ AIILTTHSMEEAE LCDR+GIFVDGSLQCIGNPKELK+RYGGSYV
Sbjct: 761 KSLWDVVKRAKRKGAIILTTHSMEEAEILCDRIGIFVDGSLQCIGNPKELKSRYGGSYVL 820
Query: 481 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540
T+TTS +HE+EVE + +S A KIY+ +GTQKFELPKQEV++ +VF+A+E+AK+ F V
Sbjct: 821 TVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEVFKALEKAKTMFPV 880
Query: 541 FAWGLADTTLEDVFIKVAR 559
AWGLADTTLEDVFIKVA+
Sbjct: 881 VAWGLADTTLEDVFIKVAQ 899
|
|
| DICTYBASE|DDB_G0291980 abcA9 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 131/315 (41%), Positives = 184/315 (58%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+I + L K Y GR P K +V+ L L++ GE G LG NGAGKTT ISM+ G+ TS
Sbjct: 531 VIIEGLTKHYVGR---P-KPSVDNLYLSVRKGEVLGFLGANGAGKTTTISMLTGLYTPTS 586
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
GTA+V GLDIR DMD I+ +GV Q D+ WE L+ E LL++ RLK + Q+VE
Sbjct: 587 GTAHVAGLDIRYDMDNIHHVIGVAMQFDIFWEDLSCVETLLYFTRLKGVPPEREIQSVES 646
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
LK VNLF V ++ + SGGMKRRLS A+++ G+ ++++DEPSTG+ R +LW
Sbjct: 647 ILKEVNLFE--VKERLVKELSGGMKRRLSFAVAMTGDSSIIFLDEPSTGISSELRRDLWR 704
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTS 485
+ K+ R+IILTTHSMEEA+ L R+ I G LQCIG LKA++G Y +
Sbjct: 705 TINDLKKNRSIILTTHSMEEADVLSSRIAIISQGKLQCIGTQNHLKAKFGDGYSVRINVE 764
Query: 486 ADH--EEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAW 543
+ + + SP A G+ + PK V +SD++Q + K + W
Sbjct: 765 EPYINTHNPTELITKFSPQAVLTESFDGSYNYRFPKNTV-ISDLYQYLVSHKYDHHLQEW 823
Query: 544 GLADTTLEDVFIKVA 558
+ T+LEDVF+K++
Sbjct: 824 SFSQTSLEDVFLKIS 838
|
|
| DICTYBASE|DDB_G0271140 abcA7 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 132/315 (41%), Positives = 191/315 (60%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+I LRK +PGR P K A++ L L++ GE G LGPNGAGKTT IS++ G+ TS
Sbjct: 525 LIVQGLRKQFPGR---P-KPALSNLYLSVKKGEVLGYLGPNGAGKTTSISILTGLYTPTS 580
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
GTA++ GLDIR DMD+I+ +GV Q D+LWE LT E +L+Y RLK ++
Sbjct: 581 GTAHIAGLDIRYDMDKIHQVIGVVMQFDVLWEDLTCEETILYYTRLKGTPKSIEFESTHN 640
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
LK VNL V D+ + SGGMKRRLS AI++ G ++++DEP+TGL +R +LW
Sbjct: 641 ILKEVNLLD--VKDRFVKELSGGMKRRLSFAIAMTGESSIIFLDEPTTGLSIETRKDLWG 698
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTS 485
+ K+ R+IILTTHSM+EA+ L DR+ I G LQCIG LK ++G Y +
Sbjct: 699 TINELKKNRSIILTTHSMQEADILSDRIAIVSQGKLQCIGTQTHLKQKFGDGYSVRIDIQ 758
Query: 486 ADHEE--EVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAW 543
D++ + K SP A +G+ + LPK + +SD+++ + K ++ + W
Sbjct: 759 EDYQNTHNPTDLIKSFSPSATLSETFNGSYVYRLPKDSI-ISDLYEYLVLNKEQYHLQEW 817
Query: 544 GLADTTLEDVFIKVA 558
L+ T+LEDVF+K++
Sbjct: 818 SLSQTSLEDVFLKIS 832
|
|
| TAIR|locus:2100367 ABCA2 "ATP-binding cassette A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 5.3e-68, Sum P(2) = 5.3e-68
Identities = 126/309 (40%), Positives = 187/309 (60%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 323
A+ GL + + + F +LGPNGAGKTT I+ + G+ T G A + G IR+ M I
Sbjct: 546 ALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDALIYGNSIRSSVGMSNIR 605
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+GVCPQ D+LW+ L+G EHL + +K L ++ VE+SL V L G +AG
Sbjct: 606 KMIGVCPQFDILWDALSGEEHLKLFASIKGLPPSSINSMVEKSLAEVKLTEAGKI--RAG 663
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443
YSGGMKRRLSVA+SLIG+PK+V++DEP+TG+DP +R ++W++++ K+GRAIILTTHSM
Sbjct: 664 SYSGGMKRRLSVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQETKKGRAIILTTHSM 723
Query: 444 EEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV--FTMTTSADHEEEVESMA----K 497
EEA+ L DR+GI G L+CIG LK+R+G ++ + S +H E S + K
Sbjct: 724 EEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFVESNNHNGEAGSDSREPVK 783
Query: 498 RLSPGANKIYQISGTQKFE---LPK-QEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDV 553
+ K+ I + F +P +E ++ F +++ + F + L TLE+V
Sbjct: 784 KFFKDHLKVKPIEENKAFMTFVIPHDKENLLTSFFAELQDREEEFGISDIQLGLATLEEV 843
Query: 554 FIKVARHAQ 562
F+ +AR A+
Sbjct: 844 FLNIARKAE 852
|
|
| TAIR|locus:2054366 ABCA1 "ATP-binding cassette A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 4.4e-66, Sum P(3) = 4.4e-66
Identities = 114/251 (45%), Positives = 158/251 (62%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
NLRK+YPG + KVAV L+ ++ +GECFG LG NGAGKTT +SM+ G TSGTA+
Sbjct: 1457 NLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAF 1516
Query: 310 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
+ G DI I +G CPQ D L+E LT +EHL Y R+K + + V E L
Sbjct: 1517 IFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVE 1576
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+L + K + SGG KR+LSVAI++IG+P +V +DEPSTG+DP ++ +W+V+ R
Sbjct: 1577 FDLLKH--SHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISR 1634
Query: 430 --AKQGR-AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSA 486
+ G+ A+ILTTHSM EA+ALC R+GI V G L+CIG+P+ LK RYG + +
Sbjct: 1635 LSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNE 1694
Query: 487 DHEEEVESMAK 497
E+E+ +
Sbjct: 1695 VSNVELENFCQ 1705
|
|
| UNIPROTKB|E1BVQ5 ABCA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.5e-64, Sum P(2) = 7.5e-64
Identities = 128/329 (38%), Positives = 194/329 (58%)
Query: 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR 302
S ++ L K+Y R+ +AV+ +SLA+ GECFG+LG NGAGKTT M+ G
Sbjct: 1381 SSPLVIKELTKVYDSRES---LLAVDRISLAVSKGECFGLLGFNGAGKTTTFKMLTGDES 1437
Query: 303 TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 362
TSG A+V G I ++ ++ +G CPQ D L + +TGRE L Y RL+ + +
Sbjct: 1438 ITSGDAFVDGHSILANIKKVQQRIGYCPQFDALLDHMTGRETLSMYARLRGIPERYIGSC 1497
Query: 363 VEESLKSVNLF-HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
VE L+ + L H ADK YSGG KR+LS I+LIG P V+++DEPSTG+DP +R
Sbjct: 1498 VENMLRGLLLEPH---ADKLVRTYSGGNKRKLSAGIALIGGPPVIFLDEPSTGMDPVARR 1554
Query: 422 NLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
LW+ V R ++ G++II T+HSMEE EALC RL I V+G +C+G+P+ LK+++G Y
Sbjct: 1555 LLWDAVTRTRECGKSIIFTSHSMEECEALCTRLAIMVNGQFKCLGSPQHLKSKFGSGYTL 1614
Query: 481 TMTTSADHEEEVESM---AKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSR 537
T D E E+++ ++ PG+ ++ G + L + + + VF A+E+AK +
Sbjct: 1615 LAKTRTDEEGELQAFKAFVEKTFPGSVLKHEHQGMVHYHLTNKNLSWAQVFGALEKAKEK 1674
Query: 538 FTVFAWGLADTTLEDVFIKVARHAQAFED 566
+ + + ++ +LE VF+ R ED
Sbjct: 1675 YRLEDYSVSQISLEQVFMSFTRFQHYTED 1703
|
|
| RGD|1305981 Abca15 "ATP-binding cassette, subfamily A (ABC1), member 15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 1.7e-63, Sum P(2) = 1.7e-63
Identities = 120/309 (38%), Positives = 185/309 (59%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+L K++ ++ N KVA+N LSL + G+ +LG NGAGK+T +S++ G+ TSG AY
Sbjct: 526 HLHKVF--QENNITKVAINDLSLNVYEGQITVLLGHNGAGKSTTLSILSGLYPPTSGEAY 583
Query: 310 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
V G DI MD+I +G+CPQ++LL++ LT EHL FY R+K + + L +
Sbjct: 584 VHGEDISQHMDQIRNFLGLCPQQNLLFDHLTVSEHLYFYCRVKGVPQNMCLEETNNMLSA 643
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
NL D + SGGMKR+L++ I+LIG KVV +DEP++G+DPASR + W+VV+
Sbjct: 644 FNLTEK--RDAFSKSLSGGMKRKLAIIIALIGGSKVVILDEPTSGMDPASRRSTWDVVQT 701
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG-GSYVFTMTTSADH 488
KQ R I+LTTH M+EA+ L DR+ I V G+L+C G+ LK YG GS++ +
Sbjct: 702 YKQNRTILLTTHYMDEADMLGDRIAIMVQGTLRCCGSSVFLKRLYGVGSHIVMVKEPVCD 761
Query: 489 EEEVESMAKRLSPGANKIYQISGTQKFELPKQEV-RVSDVFQAVEEAKSRFTVFAWGLAD 547
+E+ + P A + F LPK+ + + A+EE + + ++G++
Sbjct: 762 VDEISKLIHYYIPTATLKTNVGNELSFILPKEYTHKFEALLTALEENQENLGISSFGMSI 821
Query: 548 TTLEDVFIK 556
TT+E+VF++
Sbjct: 822 TTMEEVFLR 830
|
|
| UNIPROTKB|F1Q1F1 ABCA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.5e-62, Sum P(2) = 1.5e-62
Identities = 126/323 (39%), Positives = 193/323 (59%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
++ L K+Y R P +AV+ + LA+ GECFG+LG NGAGKTT M+ G TS
Sbjct: 1379 LVIKELSKVYQQRA--P-LLAVDKMCLAVQKGECFGLLGFNGAGKTTTFKMLTGEETVTS 1435
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
G A+V G I +++ ++ +G CPQ D L + +TGRE L+ Y RL+ + + VE
Sbjct: 1436 GDAFVGGYSISSEIGKVRQRIGYCPQFDALLDHMTGRETLVMYARLRGIPERHIAACVEN 1495
Query: 366 SLKSVNLF-HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+L+ + L H A+K YSGG KR+LS I+L+G P V+++DEPSTG+DP +R LW
Sbjct: 1496 TLRGLLLEPH---ANKLVRTYSGGNKRKLSTGIALLGEPSVIFLDEPSTGMDPVARRLLW 1552
Query: 425 NVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMT 483
+ V RA++ G+AII+T+HSMEE EALC RL I V+G +C+G+P+ LK+++G Y
Sbjct: 1553 DTVARARESGKAIIITSHSMEECEALCTRLAIMVEGQFKCLGSPQHLKSKFGSGYSLRAK 1612
Query: 484 TSADHE----EEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFT 539
+D + EE ++ PG+ + G + LP ++ + VF +E+ K ++
Sbjct: 1613 IRSDGQQEALEEFKAFVNLTFPGSVLEDEHQGMVHYHLPGADLSWAKVFGILEKTKEKYA 1672
Query: 540 VFAWGLADTTLEDVFIKVARHAQ 562
V + ++ +LE VF+ A H Q
Sbjct: 1673 VDDYSVSQISLEQVFLSFA-HLQ 1694
|
|
| ZFIN|ZDB-GENE-050517-1 abca2 "ATP-binding cassette, sub-family A (ABC1), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 126/313 (40%), Positives = 190/313 (60%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
DNL K+Y R +AV+ L L + GECFG+LG NGAGKTT M+ G TT G A
Sbjct: 2120 DNLTKVYKSRKMG-RILAVDRLCLGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGGEA 2178
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
++Q I ++ R+ S+G CPQ D L++ LT REHL Y RL+ + + V+ +L+
Sbjct: 2179 FIQEHSILRELLRVQQSIGYCPQFDALFDDLTAREHLELYTRLRGIPWKDEERVVQWALE 2238
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ L ADK AG YSGG KR+LS AI+LIG P ++++DEP+TG+DP +R LWN++
Sbjct: 2239 KLEL--SKYADKPAGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARRFLWNLIL 2296
Query: 429 RA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
K GR+++LT+HSMEE EALC RLGI V+G +C+G+ + LK R+G Y+ T+ T
Sbjct: 2297 DIIKTGRSVVLTSHSMEECEALCTRLGIMVNGRFKCLGSIQHLKNRFGDGYMITVRTKTT 2356
Query: 488 HE-EEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLA 546
+EV R P A + +++L + + ++ VF +E+ ++ + ++
Sbjct: 2357 ASVKEVIRFFNRNFPEAILKERHHTKIQYQLKSENISLAQVFSKMEQVVEVLSIEDYSVS 2416
Query: 547 DTTLEDVFIKVAR 559
TTL++VF+ A+
Sbjct: 2417 QTTLDNVFVNFAK 2429
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9STT5 | AB7A_ARATH | No assigned EC number | 0.7469 | 0.9859 | 0.5989 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00000115001 | SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (949 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 568 | |||
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-104 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-80 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-74 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-72 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-71 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-63 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-57 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-57 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-51 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-48 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-48 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-47 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-45 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-43 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-40 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-40 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-38 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-38 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-38 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-36 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-35 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-34 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-34 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-34 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-34 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-34 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-33 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-33 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-33 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-33 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-32 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-32 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-32 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-31 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-31 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-30 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-28 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-28 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-28 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-28 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-27 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-27 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-27 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-27 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-27 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-26 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-26 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-26 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-26 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-26 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-25 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-25 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-25 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-25 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-25 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-25 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-24 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-24 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-24 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-24 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-24 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-24 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-23 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-23 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-22 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-22 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-22 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-22 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-22 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-21 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-21 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-21 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-21 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-20 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-20 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-20 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-20 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-20 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-20 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-19 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-19 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-19 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-19 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-19 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-19 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-19 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-19 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-19 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-19 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-19 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-19 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-18 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-18 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-18 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-18 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-18 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-18 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-18 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-18 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-18 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-18 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-17 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-17 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-17 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-17 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-17 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-17 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-17 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-17 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-17 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-16 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-16 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-16 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-16 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-16 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-16 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-15 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-15 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-15 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-15 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-15 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-15 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-15 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-15 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-15 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-14 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-14 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-14 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-14 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-14 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-14 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-14 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-14 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-14 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-13 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-13 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-13 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-13 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-13 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-13 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 9e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-12 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-12 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-12 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-12 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-11 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-11 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-11 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-10 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-10 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-10 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-10 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 7e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-09 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-09 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-08 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-07 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-07 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-06 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-05 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 7e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.001 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.001 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.001 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.004 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-104
Identities = 118/226 (52%), Positives = 153/226 (67%), Gaps = 6/226 (2%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ NL K Y K AV+ LSL + GE FG+LG NGAGKTT + M+ G R TS
Sbjct: 1 LQIRNLTKTY----KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
GTAY+ G IRTD S+G CPQ D L++ LT REHL FY RLK L + + VE
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L+ + L A+K+A SGGMKR+LS+AI+LIG P V+ +DEP++GLDPASR +W+
Sbjct: 117 LLRVLGLTD--KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
++ ++GR+IILTTHSM+EAEALCDR+ I DG L+CIG+P+ELK
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 9e-80
Identities = 108/315 (34%), Positives = 173/315 (54%), Gaps = 30/315 (9%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
I NL K Y G +K A++G+S + GE FG+LGPNGAGKTT + ++ G+ + T
Sbjct: 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
SG V G D+ + ++ +G PQE L+ LT RE+L F+ RL L + +E
Sbjct: 59 SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE 118
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E L+ L A+K+ SGGMK+RLS+A++L+ +P+++ +DEP++GLDP SR +W
Sbjct: 119 ELLELFGL--EDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 425 NVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482
+++ + G I+L+TH +EEAE LCDR+ I DG + G P+ELK ++GG V +
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236
Query: 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFA 542
E+ K L K E ++++ +A+ E + +
Sbjct: 237 EPERLELAELLEGLK-------------------LVKGEEELAEILEALLEEG--VKIES 275
Query: 543 WGLADTTLEDVFIKV 557
+ + +LEDVF+++
Sbjct: 276 IEVKEPSLEDVFLEL 290
|
Length = 293 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 2e-74
Identities = 112/298 (37%), Positives = 160/298 (53%), Gaps = 9/298 (3%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324
AV+G++ + GE FG LGPNGAGKTT I M+ + R TSGTA V G D+ + ++
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
S+G+ PQ + E LTGRE+L GRL L + EE L+ L AD+ G
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA--ADRPVGT 124
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSM 443
YSGGM+RRL +A SLI P V+++DEP+TGLDP +R +W+ ++ K+ G I+LTTH M
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 444 EEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHEEEVESMAKRLSP-- 501
EEA+ LCDR+ I G + G P+ELK R G + + + SM
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLIAELGET 244
Query: 502 --GANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKV 557
G + S K +P + V ++ +A R + +L+DVF+K+
Sbjct: 245 GLGLLAVTVDSDRIKILVPDGDETVPEIVEAAIRNGIRIRSIS--TERPSLDDVFLKL 300
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 9e-72
Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 10/228 (4%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +NL K Y AV G+S + GE FG+LGPNGAGKTT I M+ + + TS
Sbjct: 1 IEVENLVKKY---GDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
G A V G D+ + + +G+ Q+ + + LTG E+L + RL + G + ++E
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L V L AD+ YSGGM+RRL +A SL+ P+V+++DEP+ GLDP +R ++W
Sbjct: 115 LLDFVGL--LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172
Query: 426 VVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
+++ + G I+LTTH MEEAE LCDR+ I G + G P+ELK
Sbjct: 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 248 bits (633), Expect = 6e-71
Identities = 137/355 (38%), Positives = 204/355 (57%), Gaps = 20/355 (5%)
Query: 222 EKPDVTQERERVEQLLLEPGTSHAIISDN-LRKIYPGRDGNPEKVAVNGLSLALPSGECF 280
E DV +ER+R+ + G I+ N L K+Y G +P AV+ L + + GECF
Sbjct: 1917 EDDDVAEERQRI----ISGGNKTDILRLNELTKVYSG-TSSP---AVDRLCVGVRPGECF 1968
Query: 281 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 340
G+LG NGAGKTT M+ G T TSG A V G I T++ ++ +MG CPQ D + + LT
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028
Query: 341 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400
GREHL Y RL+ + + + S++S+ L AD+ AG YSGG KR+LS AI+LI
Sbjct: 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGL--SLYADRLAGTYSGGNKRKLSTAIALI 2086
Query: 401 GNPKVVYMDEPSTGLDPASRNNLWN-VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
G P +V +DEP+TG+DP +R LWN +V ++GRA++LT+HSMEE EALC RL I V G
Sbjct: 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
Query: 460 SLQCIGNPKELKARYGGSYVFTMTTSADHEE------EVESMAKRLSPGANKIYQISGTQ 513
+ QC+G + LK+++G Y+ TM + ++ VE + PG+ + +
Sbjct: 2147 AFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNML 2206
Query: 514 KFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFEDLP 568
+F++ ++ +FQ + K + + + TTL+ VF+ A+ DLP
Sbjct: 2207 QFQVSSSS--LARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYDLP 2259
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 3e-63
Identities = 75/214 (35%), Positives = 118/214 (55%), Gaps = 45/214 (21%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
NL K Y K A++ +SL + GE +G+LGPNGAGKTT I +++G+ + SG
Sbjct: 4 RNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
V G DI+ + + + +G P+E L+E LT RE+L
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL----------------------- 94
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
K SGGMK+RL++A +L+ +P+++ +DEP++GLDP SR W +++
Sbjct: 95 ---------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 429 R-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
K+G+ I+L++H +EEAE LCDR+ I +G +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 2e-57
Identities = 171/621 (27%), Positives = 280/621 (45%), Gaps = 83/621 (13%)
Query: 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINL 61
+K G+ + W + F I S+ + +F ++ R + I F+F + +
Sbjct: 686 LKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTA 743
Query: 62 QIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGF 121
I FL++ FS A+ + F T L L F TA+ L
Sbjct: 744 TIMQCFLLSTFFSKASLAAACSGVIYF-TLYLPHIL--CFAWQDRMTADLKTAVSLLSPV 800
Query: 122 ALYRGLYEFGT-YSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLG-----IA 175
A + FGT Y R G G+ W+++ +S E ++ ++ +LL +A
Sbjct: 801 A-----FGFGTEYLVRFEEQGL-GLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLA 854
Query: 176 YYVDKILSSG-GAKGPLYFLQN---FKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQ--- 228
+Y+D++ G P YFL + S R+ + + ME P+ +
Sbjct: 855 WYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGIN 914
Query: 229 ----ERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 284
ERE PG + NL KI+ G P AV+ L++ + LG
Sbjct: 915 DSFFEREL-------PGLVPGVCVKNLVKIFEPS-GRP---AVDRLNITFYENQITAFLG 963
Query: 285 PNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 344
NGAGKTT +S++ G+ TSGT V G DI T++D + S+G+CPQ ++L+ LT EH
Sbjct: 964 HNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023
Query: 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404
+LFY +LK +E L+ L H +++A SGGM+R+LSVAI+ +G+ K
Sbjct: 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK--RNEEAQDLSGGMQRKLSVAIAFVGDAK 1081
Query: 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464
VV +DEP++G+DP SR ++W+++ + + GR II++TH M+EA+ L DR+ I G L C
Sbjct: 1082 VVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141
Query: 465 GNPKELKARYGGSYVFTM--------------------------TTSADHEE-------- 490
G P LK +G + T+ T +
Sbjct: 1142 GTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVL 1201
Query: 491 -----EVESMAKRLSPGANKIYQISGTQKFELPKQEVR---VSDVFQAVEEAKSRFTVFA 542
E+ + P A + I F LP + + + +F+ +EE + + +
Sbjct: 1202 DGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSS 1261
Query: 543 WGLADTTLEDVFIKVARHAQA 563
+G++DT LE++F+KV A +
Sbjct: 1262 FGISDTPLEEIFLKVTEDADS 1282
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-57
Identities = 78/217 (35%), Positives = 125/217 (57%), Gaps = 9/217 (4%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ +NL K Y K A++G+SL L G +G+LGPNGAGKTT + ++ +T +S
Sbjct: 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS 53
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
GT + G D+ ++ +G PQE ++ T RE L + LK + + V+E
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE 113
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L+ VNL G A K+ G SGGM+RR+ +A +L+G+P ++ +DEP+ GLDP R N
Sbjct: 114 VLELVNL--GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN 171
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
++ + R +IL+TH +E+ E+LC+++ + G L
Sbjct: 172 LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 2e-51
Identities = 102/277 (36%), Positives = 151/277 (54%), Gaps = 15/277 (5%)
Query: 240 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299
P + I N+ K Y +K+ V+GLS + GECFG+LGPNGAGKTT + M++G
Sbjct: 2 PMSVAPIDFRNVEKRYG------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55
Query: 300 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
+T +G+ + G + + +GV PQ D L T RE+LL +GR L A
Sbjct: 56 LTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
V L+ L + AD + G+ SGGMKRRL++A +L+ +P V+ +DEP+TGLDP +
Sbjct: 116 RALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
Query: 420 RNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
R+ +W ++ +G+ I+LTTH MEEAE LCDRL + +G G P L G
Sbjct: 174 RHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCD 233
Query: 479 VFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKF 515
V + + + ++ L+P A + +ISG F
Sbjct: 234 VIEI-----YGPDPVALRDELAPLAERT-EISGETLF 264
|
Length = 306 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-48
Identities = 74/215 (34%), Positives = 122/215 (56%), Gaps = 5/215 (2%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +D L K + RD AV+G+S + GE G+LGPNGAGKTT + M+ G+ +
Sbjct: 2 ITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
G A V G D+ + +G L++ LT RE+L ++ L LKG LT +EE
Sbjct: 60 GFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE 119
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
+ + + D++ G +S GM++++++A +L+ +P V+ +DEP+TGLD + L
Sbjct: 120 LADRLGMEE--LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 426 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDG 459
+++ + G+ I+ +TH M+E E LCDR+ + G
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 4e-48
Identities = 112/320 (35%), Positives = 162/320 (50%), Gaps = 34/320 (10%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
AI + K Y K VNGLS + SGECFG+LGPNGAGK+T M++G+T
Sbjct: 41 AIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD 94
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
+G V G+ + +GV PQ D L T RE+LL +GR + T+ +E
Sbjct: 95 AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS----TREIE 150
Query: 365 ESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+ S+ F AD + SGGMKRRL++A +LI +P+++ +DEP+TGLDP +R+
Sbjct: 151 AVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210
Query: 423 LWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481
+W ++ +G+ I+LTTH MEEAE LCDRL + G G P L + G V
Sbjct: 211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIE 270
Query: 482 MTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVF 541
+ HE ++ + P A +I ++SG F D Q + + R
Sbjct: 271 IYGGDPHE-----LSSLVKPYARRI-EVSGETLF------CYAPDPEQVRVQLRGR---- 314
Query: 542 AWGL----ADTTLEDVFIKV 557
GL LEDVF+++
Sbjct: 315 -AGLRLLQRPPNLEDVFLRL 333
|
Length = 340 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 9e-47
Identities = 72/211 (34%), Positives = 119/211 (56%), Gaps = 3/211 (1%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AV +S GE G+LG NGAGKTT + M+ + SG + G+D D +
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+GV E L+ LT RE+L ++ RL L + + E K + L D++ G++
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL--LEYLDRRVGEF 134
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME 444
S GMK+++++A +L+ +P ++ +DEP++GLD +R + +K+ K +GRA+I ++H M+
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ 194
Query: 445 EAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
E EALCDR+ + G + G+ + L AR
Sbjct: 195 EVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
|
Length = 245 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 3e-45
Identities = 88/227 (38%), Positives = 124/227 (54%), Gaps = 9/227 (3%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
AI + K Y KV VN LS + GECFG+LGPNGAGK+T M++G+
Sbjct: 4 AIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
G V G + + ++GV PQ D L T RE+LL +GR + + +
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
L+ L AD + SGGMKRRL++A +LI +P+++ +DEP+TGLDP +R+ +W
Sbjct: 118 SLLEFARL--ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 425 NVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++ +G+ I+LTTH MEEAE LCDRL + G G P L
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 5e-43
Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 22/313 (7%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
A+ + + K + +K AV+ +S +P GE FG+LGPNGAGKTT M++G+
Sbjct: 1 MALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP 54
Query: 304 TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
T G G + I +G P+E L+ +T + L + LK + + + +
Sbjct: 55 TEGEITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL 111
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+ L+ + + G K+ + S G ++++ ++I P+++ +DEP +GLDP + L
Sbjct: 112 QAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169
Query: 424 WNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482
+ + K +G II ++H ME E LCDRL + G G ++++ +G +
Sbjct: 170 KDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLV-- 227
Query: 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFA 542
S EE+ ++ PG KI + + E ++FQ V +
Sbjct: 228 IESDLSLEELANI-----PGILKITETKDGSWRIQIENETVAREIFQEVARDGY---IQR 279
Query: 543 WGLADTTLEDVFI 555
+ L + +L D+FI
Sbjct: 280 FELQEPSLHDIFI 292
|
Length = 300 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-40
Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+K ++ +SL + GE +G LGPNGAGKTT + +++G+ + SG G
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEA 70
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+G + + LT RE+L RL ++ + ++E L V L A K+
Sbjct: 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGL--KDSAKKKV 124
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTH 441
+S GMK+RL +A++L+GNP ++ +DEP+ GLDP L ++ QG +++++H
Sbjct: 125 KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184
Query: 442 SMEEAEALCDRLGIFVDGSL 461
+ E + + DR+GI G L
Sbjct: 185 LLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 7e-40
Identities = 66/211 (31%), Positives = 115/211 (54%), Gaps = 12/211 (5%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ K + A++ +S ++ GE FG+LGPNGAGKTT I M++GI SG
Sbjct: 5 NVTKRFG------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 310 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
G + +G P+E L+ + + L++ +LK LK + ++E L+
Sbjct: 59 FDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+ L A+K+ + S G ++++ ++I +P+++ +DEP +GLDP + L +V++
Sbjct: 116 LEL--SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 430 -AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
A+ G+ +IL+TH ME E LCDR+ + G
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-38
Identities = 89/313 (28%), Positives = 153/313 (48%), Gaps = 20/313 (6%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
+I +L K+Y + A++ +S G G LGPNGAGK+T + ++ G
Sbjct: 2 SIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD 55
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
SG+ V G D+ + + ++G P+ + L+ + RE+L F + +KG L Q VE
Sbjct: 56 SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE 115
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E ++ V L K+ G+ S G ++R+ +A +LI +PKV+ +DEP+TGLDP +
Sbjct: 116 EMIELVGL--RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIR 173
Query: 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTT 484
NV+K + + IIL+TH M+E EA+CDR+ I G + EL A V +
Sbjct: 174 NVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA-ANKKQVIEVEF 232
Query: 485 SADHEEEVESMAKRLSPGANKIYQISGTQKFEL---PKQEVRVSDVFQAVEEAKSRFTVF 541
+ ++ + +S N +G ++L + R ++F+ ++ +
Sbjct: 233 EEQIDLQLFETLEEISSVKN-----TGGNTWKLTFETPNDTR-PEIFKLAQQ--KGLKLI 284
Query: 542 AWGLADTTLEDVF 554
+ + LE VF
Sbjct: 285 SLQQNEKNLEQVF 297
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-38
Identities = 78/214 (36%), Positives = 120/214 (56%), Gaps = 18/214 (8%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
NL K + + AVN +SL +P +G+LGPNGAGK+T + M+ GI R TSG
Sbjct: 5 NLSKRFGKQT------AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 310 VQGLD-IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
G R D+ +I G + L+E LT RE+L + L L ++E L
Sbjct: 59 FDGHPWTRKDLHKI----GSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLN 110
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
V+L + G K+A ++S GMK+RL +AI+L+ +PK++ +DEP+ GLDP L +++
Sbjct: 111 IVDLTNTG--KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168
Query: 429 R-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+QG +IL++H + E + L D +GI +G L
Sbjct: 169 SFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-38
Identities = 69/217 (31%), Positives = 117/217 (53%), Gaps = 15/217 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
NL YP + A++ +SL + GE ++GPNG+GK+T + ++ G+ TSG
Sbjct: 3 KNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV 58
Query: 309 YVQGLDIR-TDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA--LTQAV 363
V G D+ + + +G+ Q +D + E + +G L+NL P + + V
Sbjct: 59 LVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE--VAFG-LENLGLPEEEIEERV 115
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
EE+L+ V L G+ D+ SGG K+R+++A L +P ++ +DEP+ GLDPA R L
Sbjct: 116 EEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 424 WNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
++K+ +G+ II+ TH ++ L DR+ + DG
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-36
Identities = 64/229 (27%), Positives = 124/229 (54%), Gaps = 18/229 (7%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323
+ + +SL++ GE ++GPNGAGK+T + ++G+ + +SG + G +R R+
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76
Query: 324 TSMGVCPQ-EDLLWE-TLTGREHLLF--YGRLKNLKGP--ALTQAVEESLKSVNLFHGGV 377
+G PQ + +T ++ +L YG+ + + V+E+L+ V + +
Sbjct: 77 --IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED--L 132
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAI 436
D+Q G+ SGG K+R+ +A +L NP ++ +DEP TG+D A + +++++K ++G+ +
Sbjct: 133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTV 192
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE------LKARYGGSYV 479
++ TH + A DR+ I ++ L G P+E L+ +GGS
Sbjct: 193 LMVTHDLGLVMAYFDRV-ICLNRHLIASGPPEEVLTEENLEKAFGGSLA 240
|
Length = 254 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 9e-36
Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 11/238 (4%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
+ N+RK + + ++L + GE +LGP+G GK+T + M+ G+
Sbjct: 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55
Query: 304 TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
TSG + G D+ TD+ + + Q L+ +T E++ F +L+ + + + V
Sbjct: 56 TSGEILIDGRDV-TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV 114
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+E K + L H + +++ + SGG ++R+++A +L+ PKV +DEP + LD R +
Sbjct: 115 KEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 424 WNVVKRAKQGRAI--ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
+ +K+ + I TH EA L DR+ + DG +Q +G P EL R +V
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230
|
Length = 338 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-35
Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 13/231 (5%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ ++NL K Y R VNG+SL++ GE G+LGPNGAGKTT M++G+ + S
Sbjct: 1 LRAENLSKRYGKR------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS 54
Query: 306 GTAYVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 362
G + G DI T + R +G PQE ++ LT E++L ++ L +
Sbjct: 55 GKILLDGQDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK 113
Query: 363 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+EE L+ ++ H + +A SGG +RR+ +A +L NPK + +DEP G+DP + +
Sbjct: 114 LEELLEEFHITH--LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171
Query: 423 LWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ ++K K G +++T H++ E ++ DR I +G + G P+E+ A
Sbjct: 172 IQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-35
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 11/222 (4%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ L K Y A++ LSL + GE +LGP+G GKTT + ++ G+ R S
Sbjct: 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS 54
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
G + G D+ T + ++G+ Q+ L+ LT E++ F +L+ + + V E
Sbjct: 55 GEILIDGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE 113
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L+ V L + ++ + SGG ++R+++A +L P ++ +DEP + LD R L
Sbjct: 114 LLELVGLEG--LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE 171
Query: 426 VVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465
+K + G I TH EEA AL DR+ + +G + +G
Sbjct: 172 ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-34
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 59/211 (27%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
NL Y GR A++ +SL L +GE ++GPNG+GK+T + + G+ + TSG
Sbjct: 4 NLSFRYGGR------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 310 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
+ G DI R + + + Q
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGY-----------VPQ-------- 80
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
SGG ++R+++A +L+ NP ++ +DEP++GLDPASR L +++
Sbjct: 81 ---------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 430 -AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
A++GR +I+ TH E AE DR+ + DG
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 67/217 (30%), Positives = 122/217 (56%), Gaps = 9/217 (4%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTD 318
+ + G+ L + GE ++GP+G+GK+T + +++G+ R SG + G DI +
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71
Query: 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGV 377
+ R+ MG+ Q L+++LT E++ F R L + + V E L++V L G
Sbjct: 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL--RGA 129
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRA 435
D + SGGMK+R+++A +L +P+++ DEP+ GLDP + + ++++ K+ G
Sbjct: 130 EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
I+ TH ++ A A+ DR+ + DG + G P+EL+A
Sbjct: 190 SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 2e-34
Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 27/227 (11%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIY 323
VA++ +S ++ GE G++GPNGAGKTT +++ G R TSG+ G DI I
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI- 72
Query: 324 TSMGVC-----PQEDLLWETLT------------GREHLLFYGRLKNLKGPALTQAVEES 366
+G+ P+ L+ LT LL + + + EE
Sbjct: 73 ARLGIGRTFQIPR---LFPELTVLENVMVAAQARTGSGLLLARARREER--EARERAEEL 127
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
L+ V L +AD+ AG+ S G +RRL +A +L +PK++ +DEP+ GL+P L +
Sbjct: 128 LERVGL--ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 427 VKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
++ ++G ++L H M+ +L DR+ + G + G P E++
Sbjct: 186 IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-34
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 5/216 (2%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+ A++ +S + G +LGPNGAGK+T S++ + G V G D+R
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+GV Q+ L L+ R++L ++ L L + E L + L AD +
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL--AERADDKV 130
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTT 440
+ +GG +RR+ +A +L+ P ++ +DEP+ GLDPASR + V+ QG +++ T
Sbjct: 131 RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWAT 190
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476
H ++E EA DRL + G + G EL+ GG
Sbjct: 191 HLVDEIEA-DDRLVVLHRGRVLADGAAAELRGATGG 225
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 7e-34
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 10/210 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K Y G G A+ +SL++ GE ++GP+G GK+T + ++ G+ R TSG
Sbjct: 4 RNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
V G + G Q+D L LT +++ L+ + + EE L+
Sbjct: 62 LVDG----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
V L G + + SGGM++R+++A +L +P V+ +DEP + LD +R L +
Sbjct: 118 LVGL--SGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL 175
Query: 429 R--AKQGRAIILTTHSMEEAEALCDRLGIF 456
+ G+ ++L TH ++EA L DR+ +
Sbjct: 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 9/248 (3%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +N+ K Y + AV+ ++L + GE ++GP+G+GKTT + M+ + TS
Sbjct: 2 IEFENVSKRYGNKK------AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS 55
Query: 306 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
G + G DI D + +G Q+ L+ LT E++ +L + + +
Sbjct: 56 GEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD 115
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E L V L AD+ + SGG ++R+ VA +L +P ++ MDEP LDP +R L
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175
Query: 425 NVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482
+K ++ G+ I+ TH ++EA L DR+ + G + P E+ A +V
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
Query: 483 TTSADHEE 490
++
Sbjct: 236 FGESERGL 243
|
Length = 309 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 5e-33
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 7/218 (3%)
Query: 262 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD- 320
K A+ +SL + GE ++GPNG+GK+T + ++ G+ + TSG V GLD ++
Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74
Query: 321 -RIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 378
+ +G+ Q D T + + F L + + V E+L+ V L +
Sbjct: 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGL--EELL 132
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAI 436
D+ SGG K+R+++A L P+++ +DEP+ GLDP R L ++K+ K+ G+ I
Sbjct: 133 DRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTI 192
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474
I+ TH +E DR+ + DG + G+P E+
Sbjct: 193 IIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-33
Identities = 78/230 (33%), Positives = 128/230 (55%), Gaps = 13/230 (5%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
++++NL K Y R KV VN +SL + SGE G+LGPNGAGKTT M++G+ R S
Sbjct: 5 LVAENLAKSYKKR-----KV-VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 306 GTAYVQGLDIRTD-MD-RIYTSMGVCPQEDLLWETLTGREHLLFYGRL--KNLKGPALTQ 361
G + DI M R +G PQE ++ LT ++++ + K+LK +
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKE 118
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
++ L+ ++ H + D +A SGG +RR+ +A +L NPK + +DEP G+DP +
Sbjct: 119 ELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176
Query: 422 NLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++ ++K K G +++T H++ E +CDR I DG + G+P+E+
Sbjct: 177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226
|
Length = 243 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 8e-33
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 19/235 (8%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
+ +NL Y G+ ++ LS ++P GE G+LGPNG+GK+T + + G+ +
Sbjct: 1 MMLEVENLSFGYGGK------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP 54
Query: 304 TSGTAYVQGLDIRTDMDR--IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-----G 356
SG + G DI + + + PQ LT E L+ GR +L
Sbjct: 55 KSGEVLLDGKDIA-SLSPKELAKKLAYVPQSPSAPFGLTVYE-LVLLGRYPHLGLFGRPS 112
Query: 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
+ VEE+L+ + L H +AD+ + SGG ++R+ +A +L ++ +DEP++ LD
Sbjct: 113 KEDEEIVEEALELLGLEH--LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD 170
Query: 417 PASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
A + + +++ ++G +++ H + A D L + DG + G P+E
Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 37/235 (15%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
NL +P G A++ +S ++ GE G++G +G+GK+T ++G+ + TSG+
Sbjct: 5 KNLSVSFPTGGG--SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62
Query: 309 YVQGLDI---RTDMDRIY-TSMGVCPQ------------EDLLWETLTGREHLLFYGRLK 352
G D+ + +I + + Q + + E L +G+L
Sbjct: 63 IFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP------LRIHGKLS 116
Query: 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYM 408
+ A +AV L V L ++ +Y SGG ++R+++A +L NPK++
Sbjct: 117 KKE--ARKEAVLLLLVGVGL-----PEEVLNRYPHELSGGQRQRVAIARALALNPKLLIA 169
Query: 409 DEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
DEP++ LD + + + +++K+ ++ G ++ TH + + DR+ + G +
Sbjct: 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 246 IISDNLRKIYPGRDGNP---------------EKVAVNGLSLALPSGECFGMLGPNGAGK 290
I NL K Y P E A+ G+S + GE G +GPNGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 291 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYG 349
TT + ++ G+ + TSG V GL + +G V Q+ LW L +
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120
Query: 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409
+ +L + ++E + ++L + D + S G + R +A +L+ P+++++D
Sbjct: 121 AIYDLPPARFKKRLDELSELLDL--EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178
Query: 410 EPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
EP+ GLD ++ N+ N +K ++G ++LT+H M++ EAL R+ + G L
Sbjct: 179 EPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-32
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 47/219 (21%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ N+ K Y +K +N +SL + +GE +LGP+G+GK+T + + G+ S
Sbjct: 1 LELKNVSKRYG------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54
Query: 306 GTAYVQGLDIRTDMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 362
G+ + G D+ D + +G+ Q+ L+ LT E++ L
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------GL--- 101
Query: 363 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
SGG ++R+++A +L +P V+ +DEP++ LDP +R
Sbjct: 102 -----------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 423 LWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
+ ++K +A+ G ++L TH ++EA L DR+ + DG
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 8/234 (3%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ K Y G K AVN L+L + GE ++GP+G+GKTT + M+ + TSG
Sbjct: 4 ENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 309 YVQGLDIR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
++ G DIR D + +G Q+ L+ +T E++ +L + + +E L
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
V L AD+ + SGG ++R+ VA +L +P ++ MDEP LDP +R+ L
Sbjct: 119 ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178
Query: 428 KRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
KR +Q G+ I+ TH ++EA L DR+ I +G + +G P E+ +V
Sbjct: 179 KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFV 232
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 4e-32
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 16/211 (7%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+ + K + G + ++L++ GE +LGP+G GK+T + ++ G+ + TSG
Sbjct: 7 EGVSKSFGGV------EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
+ G + I G QED L LT +++ L+ + +E L+
Sbjct: 61 LLDGRPVTGPGPDI----GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
V L G DK + SGGM++R+++A +L PK++ +DEP LD +R L + +
Sbjct: 117 LVGL--AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 429 R--AKQGRAIILTTHSMEEAEALCDRLGIFV 457
R + + ++L TH ++EA L DR + V
Sbjct: 175 RLWEETRKTVLLVTHDVDEAVYLADR--VVV 203
|
Length = 248 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 55/196 (28%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323
+ +S + GE ++GPNGAGK+T + ++G+ + TSG+ V G + + RI
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI- 70
Query: 324 TSMGVCPQ-EDLLWE-TLTGREHLL--FYGRLKNLKGP--ALTQAVEESLKSVNLFHGGV 377
G PQ + + ++ R+ +L YG + A V+E+L+ V L +
Sbjct: 71 ---GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE--L 125
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAI 436
AD+Q G+ SGG ++R+ +A +L+ +P ++ +DEP G+DP ++ +++ +++ ++ G I
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTI 185
Query: 437 ILTTHSMEEAEALCDR 452
++ TH + DR
Sbjct: 186 LVVTHDLGLVLEYFDR 201
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 11/224 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ K Y G VA++G+SL + GE F +LGP+G GKTT + ++ G TSG
Sbjct: 4 ENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
+ G DI T++ + Q L+ LT E++ F RLK L + + V E+L
Sbjct: 58 LLDGKDI-TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
V L G A+++ + SGG ++R+++A +L+ PKV+ +DEP LD R ++ +K
Sbjct: 117 LVQL--EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELK 174
Query: 429 RAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
R ++ G + TH EEA + DR+ + G +Q IG P+E+
Sbjct: 175 RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 5e-31
Identities = 65/217 (29%), Positives = 120/217 (55%), Gaps = 8/217 (3%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTD 318
++V ++G+ L +P GE +LG +G+GK+T + +++G+ R G + G DI +
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79
Query: 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGV 377
+ I MGV Q+ L+ +LT E++ F R L + + V L+ V L G
Sbjct: 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGL-RGAA 138
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRA 435
AD + SGGM++R+++A ++ +P+++++DEP++GLDP S + +++ G
Sbjct: 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLT 198
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+I+ TH ++ + DR+ + DG + G P+EL A
Sbjct: 199 VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-30
Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 12/219 (5%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
NL K Y G G + A+ G+SL++ GE ++GP+G+GK+T ++++ G+ R TSG
Sbjct: 5 NLSKTYGG--GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62
Query: 310 VQGLDI----RTDMDRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
V G DI ++ +G Q L LT E++ L + + E
Sbjct: 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE 122
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E L+ V L G + + SGG ++R+++A +L +PK++ DEP+ LD + +
Sbjct: 123 ELLERVGL--GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 425 NVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+++ + G I++ TH E AE DR+ DG +
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 8e-30
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSG 306
NL K + +S GE ++GP+GAGK+T ++ + G SG
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66
Query: 307 TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
+ G D +G PQ+D+L TLT RE L+F +L+ L
Sbjct: 67 EVLING--RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL------------ 112
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
SGG ++R+S+A+ L+ NP ++++DEP++GLD +S + ++
Sbjct: 113 -------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
Query: 427 VKR-AKQGRAIILTTHSM-EEAEALCDRL 453
++R A GR II + H E L D+L
Sbjct: 154 LRRLADTGRTIICSIHQPSSEIFELFDKL 182
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 57/219 (26%), Positives = 111/219 (50%), Gaps = 14/219 (6%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM---MIGIT--RTTSGTAYVQGLDIRT 317
+K A+ +SL +P GE ++GP+G GK+T + + + + G + G DI
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 318 DMDRIY---TSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNL 372
+ +G+ Q+ + ++ +++ + RL +K L + VEE+L+ L
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFPGSI--YDNVAYGLRLHGIKLKEELDERVEEALRKAAL 129
Query: 373 FHGGVADKQAGKY-SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
+ V D+ SGG ++RL +A +L P+V+ +DEP++ LDP S + ++ K
Sbjct: 130 W-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK 188
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ I++ TH+M++A + DR ++G L G +++
Sbjct: 189 KEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 15/222 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ KIY G + A+ ++L + +GE ++GP+G+GK+T ++++ G+ + TSG
Sbjct: 6 NVSKIYG--LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63
Query: 310 VQGLDIRTDMDRIYTS------MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
+ G D+ T + + +G Q L LT E++ + +A
Sbjct: 64 INGKDL-TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAA 122
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG-LDPASRNN 422
EE L+ + L + K+ + SGG ++R+++A +LI NPK++ DEP TG LD +
Sbjct: 123 EELLEVLGLED-RLLKKKPSELSGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKE 180
Query: 423 LWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
+ +++ ++G+ II+ TH E A+ DR+ DG ++
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221
|
Length = 226 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-28
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMMIGITRTTSGTAYVQG--LDI 315
N +N +SL + SG+ +LG +G+GKTT IS + TTSG G
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLF 373
+ Q+D+L LT RE L + RL A+ + E + +L
Sbjct: 77 DQFQKCV----AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQ 432
+ SGG +RR+S+A+ L+ +PKV+ +DEP++GLD + NL + + + A++
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 433 GRAIILTTH 441
R +ILT H
Sbjct: 193 NRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 55/203 (27%), Positives = 111/203 (54%), Gaps = 5/203 (2%)
Query: 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 328
+SL + G+ F +LGP G+GK+ + + G + SG + G DI T++ +
Sbjct: 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISY 75
Query: 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388
PQ L+ +T +++ + + + + + + V E + + + H + +++ SGG
Sbjct: 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH--LLNRKPETLSGG 133
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEA 446
++R+++A +L+ NPK++ +DEP + LD ++ L +K+ ++ G ++ TH EEA
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 447 EALCDRLGIFVDGSLQCIGNPKE 469
AL D++ I ++G L +G P+E
Sbjct: 194 WALADKVAIMLNGKLIQVGKPEE 216
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 246 IISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
I +NL IY +G P EK A++ +++ + GE G++G G+GK+T I + G+ + T
Sbjct: 3 IKIENLTHIY--MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT 60
Query: 305 SGTAYVQGLDI---RTDMDRIYTSMGVC---PQEDLLWETLTGREHLLFYGRLKNLKGPA 358
SG + G+DI + + I +G+ P+ L ET+ + + F L
Sbjct: 61 SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI--EKDIAFGPINLGLSEEE 118
Query: 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
+ V+ ++ V L + DK + SGG KRR+++A + PK++ +DEP+ GLDP
Sbjct: 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 419 SRNNLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
R+ + N +K + IIL +HSME+ L DR+ + G + G P+E
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 324
A+N LSL + GE ++GPNGAGKTT + ++ G TR G+ G D+ +I
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-A 75
Query: 325 SMGVCP--QEDLLWETLTGREHL-LFYGRLKNLKG-------PALTQAVEESLKSVNLFH 374
G+ Q+ ++E LT E+L L R K++ +EE L+++ L
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-- 133
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
AD+ AG S G K+ L + + L+ +PK++ +DEP G+ ++K
Sbjct: 134 ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKH 193
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
++++ H ME ++ D++ + GS+ G+ +++A
Sbjct: 194 SVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-27
Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ + NL K Y GR V +SL + SGE G+LGPNGAGKTT M++GI +
Sbjct: 4 LTAKNLAKAYKGRR------VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA 57
Query: 306 GTAYVQGLDIR--TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQA 362
G + DI R +G PQE ++ L+ ++L+ ++ +L
Sbjct: 58 GNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDR 117
Query: 363 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
E ++ ++ H + D SGG +RR+ +A +L NPK + +DEP G+DP S +
Sbjct: 118 ANELMEEFHIEH--LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175
Query: 423 LWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ +++ + G +++T H++ E A+C+R I G L G P E+
Sbjct: 176 IKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-27
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 19/201 (9%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---LDIRTDMD------RIYTSM 326
+ E G+ G +GAGK+T + + G+ + GT + G D R ++ +I
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI---- 77
Query: 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 386
G+ Q+ L+ L RE+L F LK + +V+E L + L H + ++ + S
Sbjct: 78 GLVFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDH--LLNRYPAQLS 133
Query: 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--ILTTHSME 444
GG K+R+++A +L P+++ +DEP + LD A R L +K+ K+ I I TH +
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
Query: 445 EAEALCDRLGIFVDGSLQCIG 465
EAE L DR+ + DG LQ IG
Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-27
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 14/207 (6%)
Query: 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ 331
L+ GE G+LGPNGAGKTT + ++G+ GT V G I G PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHI----GYVPQ 56
Query: 332 -EDLLWETLTGREHLLFYGRLKNL-----KGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+ W+ H + GR ++ A AV ++L+ V L +AD+ G+
Sbjct: 57 RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE--LADRPVGEL 114
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSME 444
SGG ++R+ VA +L P V+ +DEP TGLD ++ L + A G AI++TTH +
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174
Query: 445 EAEALCDRLGIFVDGSLQCIGNPKELK 471
+A A CDR+ + ++G + G P++L+
Sbjct: 175 QAMATCDRV-VLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 6e-27
Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 18/228 (7%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K + AV+ +SL + GE +LGP+G GKTT + M+ G + +SG
Sbjct: 9 RNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 309 YVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVE 364
+ G DI TD+ R +G+ Q L+ +T E++ F +++ A + VE
Sbjct: 63 LLDGEDI-TDVPPEKR---PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E+L+ V L G AD++ + SGG ++R+++A +L+ PKV+ +DEP + LD R +
Sbjct: 119 EALELVGL--EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 425 NVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+K + G + TH EEA A+ DR+ + DG ++ +G P+E+
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 23/220 (10%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--------- 315
V VN +SL + GE F ++G +G+GK+T + + + TSG + G DI
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 316 ---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNL 372
R + ++ S + P +L G E ++ + + E+L+ V L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLE-------VQGVPRAEREERAAEALELVGL 150
Query: 373 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--A 430
G K + SGGM++R+ +A +L +P ++ MDE + LDP R + + + R A
Sbjct: 151 --EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ + I+ TH ++EA L DR+ I DG L +G P+E+
Sbjct: 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 16/242 (6%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +N++K + A++ +SL + SGE +LGP+GAGK+T + ++ G+ +
Sbjct: 3 IRINNVKKRFGAF------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA 56
Query: 306 GTAYVQGLDIRTDMDRIYT---SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 362
G + G + D+ + +G Q L+ +T +++ F +++ +
Sbjct: 57 GRIRLNG-RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR 115
Query: 363 --VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
VEE L+ V L G+AD+ + SGG ++R+++A +L PKV+ +DEP LD R
Sbjct: 116 ARVEELLRLVQL--EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173
Query: 421 NNL--WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
L W + G + TH EEA L DR+ + G ++ +G P E+ +
Sbjct: 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
Query: 479 VF 480
V
Sbjct: 234 VA 235
|
Length = 345 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIY 323
AVN +SL + GE G++GPNGAGKTT +++ G + +SGT +G DI RI
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 324 TSMGVC---------PQEDLLWETLTGREHLLFYGRLKNLKG-----PALTQAVEESLKS 369
+G+ P +L G L L + E L+
Sbjct: 78 -RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK- 428
V L G +AD+ AG S G +RRL +A +L PK++ +DEP+ GL+P L +++
Sbjct: 137 VGL--GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194
Query: 429 -RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
R + G I+L H M+ L DR+ + G + G P+E
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
NL +Y G G A+N +SL + GE G++G +G+GK+T ++ G+ + +SG+
Sbjct: 7 RNLSIVYGG--GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64
Query: 309 YVQG--LDIRTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
+ G L + Y + + Q L T L L+ Q +
Sbjct: 65 LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIA 122
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E L V L D++ + SGG ++R+++A +LI PK++ +DEP++ LD + + +
Sbjct: 123 ELLDQVGL-PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181
Query: 425 NVVKRAKQGR--AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
N++ K+ R + +H + E +CDR+ + +G + IG +EL +
Sbjct: 182 NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 71/306 (23%), Positives = 122/306 (39%), Gaps = 47/306 (15%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+ K + G A++G+SL + GE +LG NGAGK+T + ++ G+ SG
Sbjct: 13 GISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 310 VQG--LDIRTDMDRIYTSMGVCPQEDLLWETLT-------GREHLLFYGRLKNLKGPALT 360
+ G + + D + + QE L L+ GRE +G + A+
Sbjct: 67 IDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR---KAMR 123
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+ E L + L D G S ++ + +A +L + +V+ +DEP+ L
Sbjct: 124 RRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 421 NNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
L+++++R K QG AII +H ++E + DR+ + DG + +G
Sbjct: 182 ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG--RVVG-------------T 226
Query: 480 FTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVR---VSDVFQAVEEAKS 536
+E V M R ++ + P EVR + V
Sbjct: 227 RPTAAETSEDELVRLMVGR---ELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDV----- 278
Query: 537 RFTVFA 542
FTV A
Sbjct: 279 SFTVRA 284
|
Length = 500 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-26
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ +N+ K + A++ L+L + GE +LGP+G GKTT + M+ G+ TS
Sbjct: 1 VELENVTKRFG------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
G Y+ G D+ TD+ + + Q L+ +T +++ F +L+ + + + V E
Sbjct: 55 GRIYIGGRDV-TDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE 113
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
+ + + H + D++ + SGG ++R+++ +++ PKV MDEP + LD R +
Sbjct: 114 VAELLQIEH--LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 426 VVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465
+KR + G I TH EA + DR+ + DG +Q IG
Sbjct: 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-26
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 47/221 (21%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+NL Y GR ++ LSL++ +GE G+LGPNGAGK+T + + G+ + +SG
Sbjct: 3 ENLSVGYGGR------TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56
Query: 309 YVQGLDIRTDMDR--IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
+ G D+ + + + + PQ +
Sbjct: 57 LLDGKDLAS-LSPKELARKIAYVPQ----------------------------------A 81
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
L+ + L H +AD+ + SGG ++R+ +A +L P ++ +DEP++ LD A + L +
Sbjct: 82 LELLGLAH--LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 427 VKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465
++R ++G+ +++ H + A DR+ + DG + G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 251 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310
I + E A+ +S +P GE G++G NGAGK+T + ++ GI SGT V
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 311 QG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
+G L + + LTGRE++ GRL L + + ++E
Sbjct: 82 RGRVSSLLGLGGGFN----------------PELTGRENIYLNGRLLGLSRKEIDEKIDE 125
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP-STGLDPASRNNLW 424
++ L G D YS GMK RL+ AI+ P ++ +DE + G D A +
Sbjct: 126 IIEFSEL--GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG-DAAFQEKCQ 182
Query: 425 NVVK-RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465
++ KQG+ +IL +H + LCDR + G ++ G
Sbjct: 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 2e-25
Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 11/215 (5%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI- 322
K VN LA+ GE F ++G +G+GK+T + M+ + T+G ++ G +I +
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQSPVE 64
Query: 323 -----YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
+G+ Q+ L+ +T ++ L + E LK V L
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL--EEY 122
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRA 435
+ + SGGM++R+ +A +L P ++ MDE + LDP R+++ + +K+ A +
Sbjct: 123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
I+ TH ++EA + DR+ I G + +G P E+
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 35/283 (12%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +N+ K + G A++ +SL +P GE FG++G +GAGK+T + ++ + R TS
Sbjct: 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 306 GTAYVQGLDIRTDMDRI-----YTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPAL 359
G+ +V G D+ T + +G+ Q +LL + T E++ F L + +
Sbjct: 61 GSVFVDGQDL-TALSEAELRQLRQKIGMIFQHFNLLS-SRTVFENVAFPLELAGVPKAEI 118
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
Q V E L+ V L +DK A +Y SGG K+R+++A +L NPK++ DE ++ L
Sbjct: 119 KQRVAELLELVGL-----SDK-ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL 172
Query: 416 DPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG-------N 466
DP + ++ ++K + G I+L TH ME + +CDR+ + G L G N
Sbjct: 173 DPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232
Query: 467 PKELKARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQI 509
PK + + E + +RL G + ++
Sbjct: 233 PKHAITQ-------EFIGETLEIDLPEELLERLESGDGPLLRL 268
|
Length = 339 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 11/217 (5%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321
AV +S +P GE G LG NGAGK+T + M+ G+ TSG V G D +
Sbjct: 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS 98
Query: 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
I MG Q LW L + L + + + ++ + ++L G
Sbjct: 99 IGLVMGQKLQ---LWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDL--EGFLKWP 153
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILT 439
K S G + R +A +L+ PKV+++DEP+ GLD ++ N+ +K ++ ++LT
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 440 THSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476
TH ++ LCDR+ + G L G +L+ ++G
Sbjct: 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250
|
Length = 325 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 10/234 (4%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I N+ K++ G + A+ +SL++P GE FG++G +GAGK+T I + G+ R TS
Sbjct: 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS 59
Query: 306 GTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 361
G+ V G D+ ++ + +G+ Q L + T E++ + + + +
Sbjct: 60 GSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE 119
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
V E L+ V L AD + SGG K+R+ +A +L NPKV+ DE ++ LDP +
Sbjct: 120 RVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 422 NLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
++ +++ + G I+L TH ME + +CDR+ + G + G +E+ A
Sbjct: 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
NL K YPG A+ ++L + GE ++GP+GAGK+T + + G+ TSG
Sbjct: 7 KNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 309 YVQGLDI-----------RTDMDRIYTSMGVCPQEDLLWETLTGR-EHLLFYGRLKNLKG 356
G+ I R D+ I+ + P+ +L L GR + + L L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
++L+ V + A ++A SGG ++R+++A +L+ PK++ DEP LD
Sbjct: 122 KEDKAQALDALERVGILD--KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 417 PASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
P S + +++K + G +I+ H ++ A+ DR+ G + G EL
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-25
Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+NL K YP K A+ +SL++ GE ++GP+GAGK+T + + G+ TSG+
Sbjct: 4 ENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 309 YVQGLDIRTDMDRIYTS----MGVCPQEDLLWETLTGREHLLFYGRLK---------NLK 355
+ G DI + +G+ Q+ L E L+ E++L GRL L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS-GRLGRRSTWRSLFGLF 117
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
Q +L+ V L A ++A + SGG ++R+++A +L+ PK++ DEP L
Sbjct: 118 PKEEKQRALAALERVGLLD--KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 416 DPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRL-----G-IFVDGSLQCI 464
DPAS + +++KR ++G +I++ H ++ A DR+ G I DG +
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326
++ LSL L +GE + G NGAGKTT ++ G+ + +SG+ + G I+ R S+
Sbjct: 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR--KSI 73
Query: 327 GVCPQE--DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
G Q+ L+ E LL LK L A + E LK ++L+ + ++
Sbjct: 74 GYVMQDVDYQLFTDSVREELLL---GLKEL--DAGNEQAETVLKDLDLY--ALKERHPLS 126
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSM 443
SGG K+RL++A +L+ ++ DEP++GLD + + +++ A QG+A+I+ TH
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY 186
Query: 444 EEAEALCDRL 453
E +CDR+
Sbjct: 187 EFLAKVCDRV 196
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 15/219 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDI-RTDMDRIY 323
A+N LS ++ GE ++GPNGAGKTT + ++ G TR G G D+ + RI
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI- 78
Query: 324 TSMGVCP--QEDLLWETLTGREHL-LFYGRLKNLK---GPALTQA----VEESLKSVNLF 373
G+ Q+ ++E LT RE+L L R K++ L ++E L ++ L
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL- 137
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQG 433
G D+ A S G K+ L + + L +PK++ +DEP G+ A ++K
Sbjct: 138 -GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK 196
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+I++ H M + D++ + +GS+ G+ E++
Sbjct: 197 HSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-24
Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 18/245 (7%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI----TRTT 304
+NL + G AV +S + GE G++G +G+GK+T ++G+ R T
Sbjct: 9 ENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 305 SGTAYVQGLDI----RTDMDRIY-TSMGVCPQE--DLLWETLTGREHL--LFYGRLKNLK 355
SG + G D+ +M ++ + + Q+ L +T + + K +
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
A +AVE L+ V L D+ + SGGM++R+ +A++L PK++ DEP+T L
Sbjct: 127 AEARKRAVE-LLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 416 DPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
D ++ + +++K + G A++ TH + L DR+ + G + G +E+ +
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
Query: 474 YGGSY 478
Y
Sbjct: 246 PQHPY 250
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 324
+ G+SL +P GE +LG NGAGKTT + ++G+ SG+ G DI
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER-A 73
Query: 325 SMGV--CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFH--GGVAD 379
G+ P+ ++ LT E+LL + + L+ V LF
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK------RKARLERVYELFPRLKERRK 127
Query: 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIIL 438
+ AG SGG ++ L++A +L+ PK++ +DEPS GL P ++ ++ +G I+L
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187
Query: 439 TTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ A + DR + G + G EL A
Sbjct: 188 VEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 41/250 (16%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RT 303
NL +P G AV+G+S L GE G++G +G+GK+ ++G+ R
Sbjct: 5 KNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 304 TSGTAYVQGLDI----RTDMDRIY-TSMGVCPQE------------DLLWETLTGREHLL 346
G G D+ ++ +I + + Q+ D + E L R H
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--RLH-- 118
Query: 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGN 402
K A +A+E L+ V + +++ Y SGGM++R+ +A++L N
Sbjct: 119 ---GKGLSKKEAKERAIE-LLELVGI---PDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 403 PKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460
PK++ DEP+T LD + + +++K + ++G A+IL TH + + DR+ + G
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231
Query: 461 LQCIGNPKEL 470
+ G +E+
Sbjct: 232 IVEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 97.8 bits (245), Expect = 8e-24
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 48/213 (22%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I N+ YPGR K + +SL + GE ++GP+G+GK+T + +++ + TS
Sbjct: 1 IEFKNVSFSYPGRP----KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 306 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
G + G+D+R D++ + ++ PQ+ L+ T RE++L
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRENIL------------------ 97
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
SGG ++R+++A +L+ +P ++ +DE ++ LDP + +
Sbjct: 98 ---------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
Query: 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457
++ +G+ +I+ H + DR I V
Sbjct: 137 EALRALAKGKTVIVIAHRLSTIR-DADR--IIV 166
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 9e-24
Identities = 79/323 (24%), Positives = 129/323 (39%), Gaps = 32/323 (9%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--------- 315
V VN SL + GE F ++G +G+GK+T + ++ + T G V G DI
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 316 ---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA---VEESLKS 369
R + ++ S + P +L G E ++G + E+L+
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLE----------VQGVPKAEREERALEALEL 151
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
V L G ADK + SGGM++R+ +A +L +P ++ MDE + LDP R + + +
Sbjct: 152 VGL--EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209
Query: 430 --AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV--FTMTTS 485
AK + I+ TH ++EA + DR+ I DG + +G P+E+ YV F
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVD 269
Query: 486 ADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGL 545
+ + +R K +L + E + K V L
Sbjct: 270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEG-REYGYAVDRGNKFVGVVSIDSL 328
Query: 546 ADTTLEDVFIKVARHAQAFEDLP 568
L D + V E L
Sbjct: 329 VKAALIDDVLTVDADTPLSEILA 351
|
Length = 386 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-23
Identities = 52/200 (26%), Positives = 103/200 (51%), Gaps = 12/200 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ K YP A++G+++++ +GE ++GP+GAGK+T + ++ TSGT
Sbjct: 5 NVTKTYP-----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 310 VQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
V G D+ + + +GV Q+ L E++ F + + + + V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
+L+ V L H + SGG ++R+++A +++ +P ++ DEP+ LDP + + N
Sbjct: 120 ALELVGLSHK--HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 426 VVKRA-KQGRAIILTTHSME 444
++K+ K G +++ TH+ E
Sbjct: 178 LLKKINKAGTTVVVATHAKE 197
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 24/230 (10%)
Query: 251 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310
L+ + G E A+ +S + GE G++G NGAGK+T + ++ GI + TSG V
Sbjct: 27 LKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86
Query: 311 QG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
G +++ G P+ LTGRE++ G + L + + V+E
Sbjct: 87 TGKVAPLIEL---------GAGFDPE-------LTGRENIYLRGLILGLTRKEIDEKVDE 130
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
++ L G D+ YS GM RL+ +++ P ++ +DE D A +
Sbjct: 131 IIEFAEL--GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188
Query: 426 VVK-RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474
+ ++ + I+L +H + + CDR G ++ G+P+E+ Y
Sbjct: 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238
|
Length = 249 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-23
Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 47/213 (22%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ YPG E + +S ++ GE ++GP+G+GK+T +++G+ R TSG
Sbjct: 4 ENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 309 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ G DI D + + +G PQ+D
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDD---------------------------------- 85
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
LF G +A+ SGG ++RL +A +L GNP+++ +DEP++ LD L +
Sbjct: 86 ---ELFSGSIAEN---ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 428 KRAK-QGRAIILTTHSMEEAEALCDRLGIFVDG 459
K G I+ H E A DR+ + DG
Sbjct: 140 AALKAAGATRIVIAHRP-ETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 7e-23
Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 15/242 (6%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
+I N+ K + VA++ +SL +PSGE +LGP+G+GKTT + ++ G+ R
Sbjct: 2 SIEVRNVSKRFGDF------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD 55
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--NLKGPALT-- 360
SGT G D TD+ ++G Q L+ +T +++ F R+K + + P
Sbjct: 56 SGTILFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR 114
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
V E LK V L +AD+ + SGG ++R+++A +L PKV+ +DEP LD R
Sbjct: 115 AKVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172
Query: 421 NNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
L ++R + + TH EEA + DR+ + G ++ +G P E+ +
Sbjct: 173 KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
Query: 479 VF 480
V+
Sbjct: 233 VY 234
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 34/270 (12%)
Query: 224 PDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGE 278
P + E+ + NL K Y R G E AV+ +S L GE
Sbjct: 259 PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ------- 331
G++G +G+GK+T ++ G+ +SG+ G D+ + Q
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE-LRRLRRRIQMVFQDPY 377
Query: 332 ---------EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
D+L E L +G V E L+ V L D+
Sbjct: 378 SSLNPRMTVGDIL------AEPLRIHGGGSG---AERRARVAELLELVGLPP-EFLDRYP 427
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTT 440
+ SGG ++R+++A +L PK++ +DEP + LD + + + N++K + + G + +
Sbjct: 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFIS 487
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
H + + DR+ + DG + G +++
Sbjct: 488 HDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517
|
Length = 539 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-22
Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR 302
+ I N+ Y + + EK+A++ ++L + GE +LG NG+GK+T M +
Sbjct: 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61
Query: 303 TTSGTAYVQGLDIRTDMD--RIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA 358
+ G YV GLD + + I G+ Q ++ + T+ E + +G +NL P
Sbjct: 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV--EEDVAFGP-ENLGIPP 118
Query: 359 --LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
+ + V+ESLK V ++ SGG K+R+++A L P+ + DEP+ LD
Sbjct: 119 EEIRERVDESLKKVGMYE--YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 417 PASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
P+ R + N +K K G IIL TH MEEA DR+ + G + G PKE+
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 2e-22
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YPG PE + GL+ A GE +LG NGAGK+T + + G+ R SG + G
Sbjct: 1 YPGG---PE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP 55
Query: 315 I---RTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
+ R + +G+ Q +D L+ + + F L + + V E+L +
Sbjct: 56 LDYSRKGLLERRQRVGLVFQDPDDQLFAADVD-QDVAFGPLNLGLSEAEVERRVREALTA 114
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
V + ++ SGG K+R+++A ++ P V+ +DEP+ GLDPA R + +++R
Sbjct: 115 VGASG--LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 430 AK-QGRAIILTTHSMEEA 446
+ +G ++++TH ++ A
Sbjct: 173 LRAEGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 2e-22
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 14/235 (5%)
Query: 241 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
G I D+LR Y ++ LSL + +GE ++G +G GKTT + + G
Sbjct: 1 GACGGIRIDHLRVAYGAN------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54
Query: 301 TRT--TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358
+ +G + D+ T + + Q L+ L +++ F R + +
Sbjct: 55 VKAAGLTGRIAIADRDL-THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD 113
Query: 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
+ + V ++LK V L G A + SGGM++R+++A ++ P V+ +DEP + LD
Sbjct: 114 IAERVADALKLVGL--GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171
Query: 419 SRNNLWNVVKRAKQ---GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
R N+ + + I+ TH ++A L D+ GI DG L G P+ L
Sbjct: 172 IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 3e-22
Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 27/232 (11%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+NL K+YP K A+ ++L + GE ++GP+GAGK+T + + + +SG+
Sbjct: 5 ENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 309 YVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLL--FYGRLKNLKG------ 356
++G DI + ++ +G+ Q L E LT E++L G +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
+ +L+ V L A ++A + SGG ++R+++A +L P ++ DEP LD
Sbjct: 120 EEDKERALSALERVGLAD--KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Query: 417 PASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRL------GIFVDGS 460
P + + + +KR + G +I+ H ++ A+ DR+ I DG+
Sbjct: 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 50/230 (21%)
Query: 250 NLRKIYP---GRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306
NL+K +P G AV+G+S ++ GE G++G +G GK+T +++G+ TSG
Sbjct: 9 NLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68
Query: 307 TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
+G DI L + V E
Sbjct: 69 EILFEGKDI------------------------------------TKLSKEERRERVLEL 92
Query: 367 LKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
L+ V G+ ++ +Y SGG ++R+ +A +L NPK++ DEP + LD + +
Sbjct: 93 LEKV-----GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 423 LWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ N++K + + G + +H + + DR+ + G + IG +E+
Sbjct: 148 ILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 5e-22
Identities = 59/208 (28%), Positives = 112/208 (53%), Gaps = 5/208 (2%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324
A++ ++L +P+G +LGP+G+GK+T + ++ G+ + SG + G D T +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA-TRVHARDR 72
Query: 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
+G Q L++ LT R+++ F ++ + VEE L+ V L G+ D+ +
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL--EGLGDRYPNQ 130
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--ILTTHS 442
SGG ++R+++A +L P+V+ +DEP LD R L + +++ + + TH
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190
Query: 443 MEEAEALCDRLGIFVDGSLQCIGNPKEL 470
EEA + DR+ + +G ++ IG+P E+
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 18/229 (7%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+L+ YP DG A+ G++ GE +LGPNGAGK+T GI + TSG
Sbjct: 6 DLKYSYP--DGT---EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 310 VQGLDIRTD---MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA--LTQA 362
++G I+ D + + ++G+ Q +D L+ T E + F G L NL + +
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAF-GPL-NLGLSKEEVEKR 117
Query: 363 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
V+E+LK+V + G +K SGG K+R+++A L P+++ +DEP++GLDP +
Sbjct: 118 VKEALKAVGM--EGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 423 LWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ ++ K+G II++TH ++ D++ + DG + G PKE+
Sbjct: 176 IMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 38/231 (16%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ YP N E A++ +SL + +GE ++G G+GK+T + ++ G+ + TSG+
Sbjct: 6 RNVSFSYP----NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 309 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVE 364
+ G DIR D + ++G PQ+ LFYG L+ L P E
Sbjct: 62 LLDGTDIRQLDPADLRRNIGYVPQDV-----------TLFYGTLRDNITLGAPLADD--E 108
Query: 365 ESLKSVNLFHGGVA----------DKQAGK----YSGGMKRRLSVAISLIGNPKVVYMDE 410
L++ L GV D Q G+ SGG ++ +++A +L+ +P ++ +DE
Sbjct: 109 RILRAAEL--AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE 166
Query: 411 PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
P++ +D S L +++ + +I+ TH L DR+ + G +
Sbjct: 167 PTSAMDMNSEERLKERLRQLLGDKTLIIITHRP-SLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-21
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 327
+ LS L +GE + GPNGAGKTT + ++ G+ R +G Y QG I+ +
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------ 72
Query: 328 VCPQEDLLW--------ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379
+ LL+ LT E+L F+ R G + E+L V L G+ D
Sbjct: 73 --YHQALLYLGHQPGIKTELTALENLHFWQR---FHGSGNAATIWEALAQVGL--AGLED 125
Query: 380 KQAGKYSGGMKRRLSVAISLIGNPKVVY-MDEPSTGLDPASRNNLWNVVK-RAKQGRAII 437
G+ S G +RR+++A L +P ++ +DEP T LD L ++ A QG ++
Sbjct: 126 LPVGQLSAGQQRRVALA-RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 438 LTTH 441
LTTH
Sbjct: 185 LTTH 188
|
Length = 209 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-21
Identities = 67/220 (30%), Positives = 119/220 (54%), Gaps = 14/220 (6%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMM--IGITRTTSGTAYVQGLDI-- 315
+K A+N +SL E ++GP+G+GK+T I+ M + T +G+ G +I
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 316 -RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 373
RTD + +G+ Q+ + ++ E++++ RLK +K L +AVE+SLK +++
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIW 135
Query: 374 HGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
V D+ A SGG ++R+ +A L +PK++ +DEP++ LDP S + +
Sbjct: 136 DE-VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
K ++L T SM++A + DR G F+DG L + K++
Sbjct: 195 KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 2e-21
Identities = 60/204 (29%), Positives = 110/204 (53%), Gaps = 12/204 (5%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDM 319
+ + G+ L + GE ++GP+G+GK+T + + + SGT + GL + + ++
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE---ESLKSVNLFHGG 376
+ + +G+ Q+ L+ LT E++ +KG + +A E E L+ V L
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITL--APIKVKGMSKAEAEERALELLEKVGLAD-- 127
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRA 435
AD + SGG ++R+++A +L NPKV+ DEP++ LDP + +V+K A++G
Sbjct: 128 KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 187
Query: 436 IILTTHSMEEAEALCDRLGIFVDG 459
+++ TH M A + DR+ IF+D
Sbjct: 188 MVVVTHEMGFAREVADRV-IFMDD 210
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-21
Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 28/274 (10%)
Query: 214 DSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLA 273
K+F +E P T ++ EP I +NL YP DG K A++ L+L
Sbjct: 291 ADKLFTLLESPVATPGSGEKAEVANEPPIE--ISLENLSFRYP--DG---KPALSDLNLT 343
Query: 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQE 332
+ +G+ ++G +GAGK+T +++++G T G V G+D+R + + Q
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 333 DLLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSVNL---------FHGGVADKQA 382
L+ T RE++L P + + + +L L + + A
Sbjct: 404 PYLFAG-TIRENILLAR-------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGA 455
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHS 442
G SGG +RL++A +L+ ++ +DEP+ LD + + ++ + + +++ TH
Sbjct: 456 G-LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514
Query: 443 MEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476
+E+A A DR+ + +G L G +EL + G
Sbjct: 515 LEDA-ADADRIVVLDNGRLVEQGTHEELSEKQGL 547
|
Length = 559 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 3e-21
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+ +GLS L +GE + GPNG+GKTT + ++ G++ +G + G + D I
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+ + TL+ E+L F+ + + VEE+L V L G D+
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGL--NGFEDRPV 123
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RAKQGRAIILTTH 441
+ S G +RR+++A L+ + +DEP+T LD A + +G ++LTTH
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 5e-21
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 21/226 (9%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDI-- 315
+ A+ G+ L E ++GP+G GK+T++ + + T +G ++G +I
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 316 -RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 373
D+ ++ +G+ Q+ + + E++++ RL +K A L +AVE SLK ++
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 374 HGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
V D A SGG ++R+ +A L P V+ +DEP++ LDP S + N++
Sbjct: 136 DE-VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKE 469
+ IIL THSM +A + D+ F+ G+L Q NPKE
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-21
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 18/218 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---DRI 322
A+ G+SL + GE +LG NGAGKTT + ++G+ R SG G DI T + +R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI-TGLPPHERA 76
Query: 323 YTSMGVCPQEDLLWETLTGREHLL--FYGRLKNLKGPALTQAVEE---SLKSVNLFHGGV 377
+ P+ ++ LT E+LL Y R + V E LK
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER------- 129
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRA 435
+++AG SGG ++ L++A +L+ PK++ +DEPS GL P ++ +K R + G
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMT 189
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
I+L + A + DR + +G + G EL A
Sbjct: 190 ILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-20
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 45/259 (17%)
Query: 221 MEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECF 280
M+ P ER + L P I N+ YPG+ E A++ +SL + GE
Sbjct: 442 MQLP---VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKV 494
Query: 281 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETL 339
++G G+GK+T + +++G+ + T G+ + G+DIR D + ++G PQ
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ-------- 546
Query: 340 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVA----------DKQAGK-- 384
+ LFYG L++ L P EE L++ L GV D Q G+
Sbjct: 547 ---DPRLFYGTLRDNIALGAPYADD--EEILRAAEL--AGVTEFVRRHPDGLDMQIGERG 599
Query: 385 --YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH- 441
SGG ++ +++A +L+ +P ++ +DEP++ +D S + +KR G+ ++L TH
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659
Query: 442 -SMEEAEALCDRLGIFVDG 459
S+ + L DR+ + +G
Sbjct: 660 TSLLD---LVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 70/215 (32%), Positives = 120/215 (55%), Gaps = 18/215 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RTDMDRIY 323
+ G+SL++ GE ++GP+G+GK+T + + G+ SG+ V G D+ + D+ ++
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+G+ Q+ L+ LT E++ +K + +A E++L+ L G+ADK A
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTL--APVKVKKLSKAEAREKALE--LLEKVGLADK-AD 131
Query: 384 KY----SGGMKRRLSVAI--SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAI 436
Y SGG ++R VAI +L +PKV+ DEP++ LDP + +V+K A++G +
Sbjct: 132 AYPAQLSGGQQQR--VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 189
Query: 437 ILTTHSMEEAEALCDRLGIFVD-GSLQCIGNPKEL 470
I+ TH M A + DR+ IF+D G + G P+E
Sbjct: 190 IIVTHEMGFAREVADRV-IFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 1e-20
Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 37/281 (13%)
Query: 211 GRQDSKVFVSMEK-PDVTQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVN 268
G D V V ME +V +E E VE II N+ K Y D K AV+
Sbjct: 251 GTPDEVVAVFMEGVSEVEKECE-VEV-------GEPIIKVRNVSKRYISVDRGVVK-AVD 301
Query: 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-------- 320
+SL + GE FG++G +GAGKTT ++ G+ TSG V+ D DM
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 321 RIYTSMGVCPQEDLLW------ETLTGREHLLFYGRLKNLKGPALTQAV---EESLKSVN 371
R +G+ QE L+ + LT L L +K + V EE +
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE-- 419
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
+ DK + S G + R+++A LI P++V +DEP+ +DP ++ ++ + + +A+
Sbjct: 420 -----ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 432 Q--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ + I+ +H M+ +CDR + DG + IG+P+E+
Sbjct: 475 EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 8/202 (3%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMDR 321
A+N +SL +P+G+ +G++G +GAGK+T I + + R TSG+ V G D+ T ++ +
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+G+ Q L + T ++ L N + + V E L V L G D
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL--GDKHDSY 137
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILT 439
SGG K+R+++A +L NPKV+ DE ++ LDPA+ ++ ++K + G I+L
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI 197
Query: 440 THSMEEAEALCDRLGIFVDGSL 461
TH M+ + +CD + + +G L
Sbjct: 198 THEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 55/191 (28%), Positives = 104/191 (54%), Gaps = 5/191 (2%)
Query: 282 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 341
+LGP+G GKTT + ++ G + SG+ + G D+ T++ + + Q L+ +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRHINMVFQSYALFPHMTV 59
Query: 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401
E++ F +++ + + V E+L+ V L AD++ + SGG ++R+++A +L+
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQL--EEFADRKPHQLSGGQQQRVALARALVF 117
Query: 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDG 459
PK++ +DEP + LD R+ + +K ++ G + TH EEA + DR+ I G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 460 SLQCIGNPKEL 470
+ IG P+E+
Sbjct: 178 KIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-20
Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K YPG A++ +SL + GE + GP+GAGKTT + ++ G + G
Sbjct: 5 HNVSKAYPG---GVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 309 YVQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
+ G D+ + +GV Q+ L T E++ ++ K + + V
Sbjct: 60 RIAGEDV-NRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+L+ V L H AD + SGG ++R+++A +++ +P ++ DEP+ LDP +
Sbjct: 119 GAALRQVGLEHK--ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI 176
Query: 424 WNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 459
+++KR K+G +I+ TH + + + R+ I DG
Sbjct: 177 LDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 4e-20
Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 16/217 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
K +N LSL+LP+G+ ++GPNG GK+T + + SGT ++ I R
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 323 YT-SMGVCPQEDLLWETLTGRE--------HLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
+ + PQ L E +T RE L +GRL V ++++ +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL----SAEDNARVNQAMEQTRIN 129
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ- 432
H +AD++ SGG ++R +A+ L + VV +DEP+T LD + L +++
Sbjct: 130 H--LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
G+ ++ H + +A CD L + +G + G P+E
Sbjct: 188 GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-20
Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 12/231 (5%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
+ I ++L Y +DG A+ GLSL++P G +LGPNGAGK+T + + GI
Sbjct: 3 NIIEVEDLHFRY--KDGTK---ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP 57
Query: 304 TSGTAYVQGLDIRTDMDR-IYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALT 360
G V G ++ + ++ + + +G+ Q +D ++ + T + + F L +
Sbjct: 58 QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVE 116
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+ VEE+LK+V ++ DK S G K+R+++A L +P V+ +DEP LDP +
Sbjct: 117 RRVEEALKAVRMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174
Query: 421 NNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
L ++ R QG+ +I+ TH ++ A D++ + +G + G+ L
Sbjct: 175 ETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
Length = 274 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 5e-20
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 10/203 (4%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTS 325
+ G++L + GE ++G +G GK+T ++++ G+ + TSG ++G I DR
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDR---- 56
Query: 326 MGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
M V LL W T+ L L +L VEE + V L ADK+ G+
Sbjct: 57 MVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEA--ADKRPGQ 114
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHS 442
SGGMK+R+++A +L PKV+ +DEP LD +R NL + + + +++ TH
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Query: 443 MEEAEALCDRLGIFVDGSLQCIG 465
++EA L DR+ + +G IG
Sbjct: 175 VDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 6e-20
Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 233 VEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTT 292
++L +P + ++ LR I DG K ++ L L + +GE +LGP+G GKTT
Sbjct: 1 SKKLNKQPSSLSPLVE--LRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTT 55
Query: 293 FISMMIGITRTTSGTAYVQGLDI------RTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346
+ ++ G SG + G DI ++ ++ S + P +T E++
Sbjct: 56 VLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPH-------MTVFENVA 108
Query: 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 406
F R++ +T V E+L+ V L A ++ + SGG ++R+++A +++ PKV+
Sbjct: 109 FGLRMQKTPAAEITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166
Query: 407 YMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464
+DE + LD R + N +K K G + TH EEA + DR+ + DG ++
Sbjct: 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 465 GNPKE 469
G P+E
Sbjct: 227 GTPRE 231
|
Length = 375 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 8e-20
Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDI- 315
EK A+ ++L +P + ++GP+G GK+T + + + R G G DI
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE-GKVLFDGQDIY 71
Query: 316 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNL 372
+ D+ + +G+ Q+ + ++ +++ + RL +K L + VEESLK L
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL 130
Query: 373 FHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+ V D+ A SGG ++RL +A +L P+V+ +DEP++ LDP + + +++
Sbjct: 131 WDE-VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
K+ I++ TH+M++A + DR F DG L G +++
Sbjct: 190 LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 1e-19
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--------- 315
+ V SLA+ GE F ++G +G+GK+T + ++ + T G + G+DI
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 316 ---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-- 370
R + ++ S + P +L T G E L G + E++L ++
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGME----------LAGINAEERREKALDALRQ 151
Query: 371 ----NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN- 425
N H + SGGM++R+ +A +L NP ++ MDE + LDP R + +
Sbjct: 152 VGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206
Query: 426 -VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTT 484
V +AK R I+ +H ++EA + DR+ I +G + +G P E+ YV T
Sbjct: 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266
Query: 485 SAD 487
D
Sbjct: 267 GVD 269
|
Length = 400 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 1e-19
Identities = 77/268 (28%), Positives = 126/268 (47%), Gaps = 41/268 (15%)
Query: 230 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 289
RE++E H + +L IY G EK AVN +S+ + ++GP+G G
Sbjct: 6 REKIEIAPFPEAKEHILEVKDL-SIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCG 59
Query: 290 KTTF---ISMM---IGITRTTSGTAYVQGLDI----------RTDMDRIYTSMGVCPQED 333
K+TF I+ M I R+ G +GL+I R ++ ++ P+
Sbjct: 60 KSTFLRSINRMNDLIPSARS-EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKS- 117
Query: 334 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK---QAGKYSGGMK 390
++ +T H L Y + L + VEESL L+ V D+ A SGG +
Sbjct: 118 -IYNNIT---HALKYAGERR--KSVLDEIVEESLTKAALWDE-VKDRLHSSALSLSGGQQ 170
Query: 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450
+RL +A +L P V+ +DEP++ LDP S + ++ K+ +II+ TH+M++A +
Sbjct: 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVS 230
Query: 451 DRLGIFVDGSL-------QCIGNPKELK 471
DR F++G L Q +PK+ K
Sbjct: 231 DRTAFFLNGDLVEYDQTEQIFTSPKQQK 258
|
Length = 268 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-19
Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 12/198 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ K YPG + A+ +S +P GE + GP+GAGK+T + ++ G R T G
Sbjct: 5 ENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 309 YVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
V G D+ ++ + +GV Q+ L T E++ R+ + + V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E L V L A + SGG ++R+++A +++ P V+ DEP+ LDP +
Sbjct: 120 EVLDLVGL--KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177
Query: 425 NVVKR-AKQGRAIILTTH 441
+ + + G +++ TH
Sbjct: 178 RLFEEINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM------MIGITRTTSGTAYVQGLDIR 316
+K A+ ++L +P + ++GP+G GK+T + +I R G + G +I
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE-GEVLLDGKNIY 77
Query: 317 T-DMD----RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN 371
+D R M V + + ++ +++ + RL +K L + VE SLK
Sbjct: 78 DPKVDVVELRRRVGM-VFQKPNPF--PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA 134
Query: 372 LFHGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
L+ V D K A SGG ++RL +A +L P+V+ MDEP++ LDP S + ++
Sbjct: 135 LW-DEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELIT 193
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
K+ I++ TH+M++A + D F G L G ++
Sbjct: 194 ELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AVN ++L + E ++GPNGAGKTT + + G + T GT ++G I
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79
Query: 326 MGVCP--QEDLLWETLTGREHLLF--YGRLKN------LKGPALTQAVEES-------LK 368
MGV Q L+ +T E+LL + +LK LK PA +A E+ L+
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
V L A++QAG + G +RRL +A ++ P+++ +DEP+ GL+P L ++
Sbjct: 140 RVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 429 --RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
R + ++L H M+ + DR+ + G+ G P+E++
Sbjct: 198 ELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
Length = 255 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 53/212 (25%), Positives = 103/212 (48%), Gaps = 21/212 (9%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ K + KV ++ L+L + G+ + ++G +G+GK+T ++++ + + SG Y
Sbjct: 3 NISKKFGD------KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56
Query: 310 VQGLDIRTDMDR-----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
+ G + + +G Q L E T E+L + K L + +
Sbjct: 57 LNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKK 116
Query: 365 ESLKSVNLFHGGVADKQAGK---YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
E+L+ V L K K SGG ++R+++A +++ P ++ DEP+ LDP +R+
Sbjct: 117 EALEKVGLNL-----KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 422 NLWNVVKR-AKQGRAIILTTHSMEEAEALCDR 452
+ +++ +G+ II+ TH E A+ DR
Sbjct: 172 EVLDLLLELNDEGKTIIIVTHDPEVAKQ-ADR 202
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-19
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+V +GLS L +GE + GPNG+GKTT + ++ G+ +GT + G DI D +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDV 71
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+ + + LT E+L F+ G + +L++V L +A
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFW---AAFLGGEEL-DIAAALEAVGL--APLAHLPF 125
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RAKQGRAIILTTH 441
G S G KRR+++A L+ N + +DEP+ LD A+ +++ QG +I TH
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185
Query: 442 S---MEEAEALCDRLGIFV 457
+ A L LG F
Sbjct: 186 IPLGLPGAREL--DLGPFA 202
|
Length = 207 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-19
Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 8/192 (4%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVC 329
L GE ++GP+G+GK+T ++++ G SG + G+D+ T + +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSML 75
Query: 330 PQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388
QE+ L+ LT +++ G LK QA+E +L V L G+ + G+ SGG
Sbjct: 76 FQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGL--AGLEKRLPGELSGG 132
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTTHSMEEA 446
++R+++A L+ + V+ +DEP LDPA R + ++V A+ +++ TH E+A
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192
Query: 447 EALCDRLGIFVD 458
+ L R+ +F+D
Sbjct: 193 KRLAQRV-VFLD 203
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 11/219 (5%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS---- 325
LP + G +G+GKTT I ++ G+TR G + G + I+
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 326 -MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
+G QE L+ L+ R +L YG + P+ + E + + L G + + G+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLR-YGMKRAR--PSERRISFERVIEL-LGIGHLLGRLPGR 131
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHS 442
SGG K+R+++ +L+ +P+++ MDEP LD + + ++R G I+ +HS
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191
Query: 443 MEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481
++E L DR+ + DG + G E+ A ++
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAR 230
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 4e-19
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 7/212 (3%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR 321
E A+ +S + GE +LG NG+GK+T ++ G+ + SG + G+ I + +
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE 80
Query: 322 IYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380
I +G+ Q D + T + + F K + + +++ K V + DK
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM--EDYLDK 138
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIIL 438
+ SGG K+R+++A L NP+++ DE ++ LDP + + ++ R + + +I
Sbjct: 139 EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIS 198
Query: 439 TTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
TH M+EA L D++ +F +G L G PKE+
Sbjct: 199 ITHDMDEA-ILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-19
Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 17/236 (7%)
Query: 226 VTQERERVEQLLLEPGTSHA--IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGML 283
V R + A + + YPGR A+ +S +P GE ++
Sbjct: 300 VLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRR-----PALRPVSFTVPPGERVALV 354
Query: 284 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGR 342
GP+GAGK+T +++++G T G+ V G+ + D D + PQ L+ T
Sbjct: 355 GPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIA 413
Query: 343 EHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397
E++ + + +A+E E + ++ + SGG +RL++A
Sbjct: 414 ENIRLA--RPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALAR 471
Query: 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 453
+ + + ++ +DEP+ LD + + ++ QGR ++L TH + A L DR+
Sbjct: 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA-LADRI 526
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 5e-19
Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 32/269 (11%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ K++P G A+N +SL +P+GE FG++G +GAGK+T I + + R TSG
Sbjct: 6 NISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63
Query: 310 VQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
V G D+ ++ + +G+ Q L + T +++ L + V E
Sbjct: 64 VDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTE 123
Query: 366 SLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
L+ V G++DK A +Y SGG K+R+++A +L NPKV+ DE ++ LDPA+
Sbjct: 124 LLELV-----GLSDK-ADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 422 NLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG-------NPKELKA 472
++ ++K + G I+L TH M+ + +CDR+ + G L G +PK
Sbjct: 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLT 237
Query: 473 RYGGSYVFTMTTSADHEEEVESMAKRLSP 501
R S H + E RL
Sbjct: 238 R-------EFIQSTLHLDLPEDYLARLQA 259
|
Length = 343 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 5e-19
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 20/230 (8%)
Query: 255 YPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313
Y + G P E A++ ++ G+ + ++G G+GK+T I + + + T+GT V +
Sbjct: 10 YTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDI 69
Query: 314 DIRTD-----MDRIYTSMGVCPQ--EDLLWETLTGREHLL----FYGRLKNLKGPALTQA 362
I + + +G+ Q E L+E RE + F L +K A
Sbjct: 70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLL 129
Query: 363 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
++ F V + + SGG R++++ L NP ++ +DEP+ GLDP S+
Sbjct: 130 MDLG------FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183
Query: 423 LWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ ++K + + IIL +H M E D + + +GS+ +PKEL
Sbjct: 184 VMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-19
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+NL K Y ++G + + G+SL++ GE ++G +G+GK+T + ++ G+ TSG
Sbjct: 5 ENLGKRY--QEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62
Query: 309 YVQGLDIRT--DMDRIY---TSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALT-- 360
G + +R +G Q HLL + L+N+ P L
Sbjct: 63 LFNGQSLSKLSSNERAKLRNKKLGFIYQ----------FHHLLPDFTALENVAMPLLIGK 112
Query: 361 QAVEES-------LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
++V+E+ L+ V L H + + + SGG ++R+++A +L+ P +V DEP+
Sbjct: 113 KSVKEAKERAYEMLEKVGLEHR--INHRPSELSGGERQRVAIARALVNQPSLVLADEPTG 170
Query: 414 GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
LD + +++++ + ++ TH +E A+ L DR+ DG L
Sbjct: 171 NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 9e-19
Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 36/189 (19%)
Query: 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 328
GLS L +GE + GPNGAGKT+ + ++ G+ R +G QG IR D +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH----- 73
Query: 329 CPQEDLLW--------ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380
+DLL+ LT E+L FY R L GP +A+ E+L V L G D
Sbjct: 74 ---QDLLYLGHQPGIKTELTALENLRFYQR---LHGPGDDEALWEALAQVGL--AGFEDV 125
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--------AKQ 432
+ S G +RR+++A + + +DEP T +D V R A+Q
Sbjct: 126 PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG-------VARLEALLAQHAEQ 178
Query: 433 GRAIILTTH 441
G +ILTTH
Sbjct: 179 GGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 1e-18
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)
Query: 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307
+L Y G+ + A+ +SL + SGE +LGP+G GKTT ++++ G + G+
Sbjct: 6 VSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ G I GV Q + L L +++ F +L+ ++ + + L
Sbjct: 62 IQLNGRRIEGPGAE----RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
V L G K + SGGM++R+ +A +L P+++ +DEP LD +R + ++
Sbjct: 118 ALVGL--EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 428 KRAKQ--GRAIILTTHSMEEAEALCDRL 453
Q G+ ++L TH +EEA L RL
Sbjct: 176 LDLWQETGKQVLLITHDIEEALFLATRL 203
|
Length = 259 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-18
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
E++ GLS L +GE + GPNG GKTT + ++ G+ R SG G + D
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE- 70
Query: 323 YTSMGVCPQEDLLW--------ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 374
P ++L+ L+ E+L F+ + G A +E++L +V L
Sbjct: 71 -------PHRNILYLGHLPGLKPELSALENLHFWAA---IHGGAQR-TIEDALAAVGL-- 117
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RAKQG 433
G D A + S G +RRL++A + + +DEP+T LD A L +++ +G
Sbjct: 118 TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177
Query: 434 RAIILTTH 441
++LTTH
Sbjct: 178 GIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-18
Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 15/225 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
NL K + DG AV+ +SL + GE F +LG +G GK+T + M+ G + T+G
Sbjct: 24 NLTKSF---DGQH---AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
Query: 310 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
+ G+D+ + + + + Q L+ +T +++ F + L + V E L
Sbjct: 78 LDGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL 136
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW----N 425
V++ A ++ + SGG ++R+++A SL PK++ +DEP LD R+ + +
Sbjct: 137 VHMQE--FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD 194
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+++R G ++ TH EEA + R+ I G IG P+E+
Sbjct: 195 ILERV--GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 68/209 (32%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A+ +SL++ GE +LGP+G GKTT + ++ G+ R T+GT Y G DI T +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI-TRLPPQKRD 77
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA--LTQAVEESLKSVNLFHGGVADKQAG 383
G+ Q L+ LT +++ YG LKN + + V E L V L G K G
Sbjct: 78 YGIVFQSYALFPNLTVADNIA-YG-LKNRGMGRAEVAERVAELLDLVGL--PGSERKYPG 133
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTH 441
+ SGG ++R+++A +L +P ++ +DEP + LD R +L +++ ++ G I+ TH
Sbjct: 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
EEA ++ DR+ + G ++ +G P+E+
Sbjct: 194 DQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-18
Identities = 52/199 (26%), Positives = 103/199 (51%), Gaps = 9/199 (4%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY-TS 325
+N +SL++ +GE + GP+G GK+T + ++ + TSGT +G D+ T Y
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78
Query: 326 MGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
+ C Q L +T+ ++L+F +++N + P A++ L L + K +
Sbjct: 79 VSYCAQTPALFGDTV--EDNLIFPWQIRNRR-PDRAAALDL-LARFALPDS-ILTKNITE 133
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHS 442
SGG K+R+++ +L PK++ +DE ++ LD +++ N+ ++ R +Q A++ TH
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193
Query: 443 MEEAEALCDRLGIFVDGSL 461
++A D++ G
Sbjct: 194 KDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 2e-18
Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 28/215 (13%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGIT---RTTSGTAY---------V 310
A+ ++L++P E ++GP+G GK+TFI ++MI + + T Y V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 311 QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKS 369
+++R ++ ++ PQ +++ + R+ K L + VE+SLK
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIF--------DNVAYGPRIHGTKNKKKLQEIVEKSLKD 138
Query: 370 VNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
V L+ V D+ QA SGG ++RL +A +L NP V+ MDEP++ LDP S + +
Sbjct: 139 VALWDE-VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL 197
Query: 427 VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+ + K+ I++ TH+M++A + D+ F G L
Sbjct: 198 ILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGEL 232
|
Length = 259 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-18
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 14/209 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+ K +PG VA + +SL++ GE +LG NGAGK+T + ++ G+ + SG
Sbjct: 9 GITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 310 VQG--LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL-TQAVEES 366
V G + I++ D I +G+ Q +L TLT E+++ L+ KG + +
Sbjct: 63 VDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG--LEPSKGGLIDRRQARAR 120
Query: 367 LKSVNLFHGGVADKQA--GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+K ++ +G D A S G ++R+ + +L +++ +DEP+ L P + L+
Sbjct: 121 IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF 180
Query: 425 NVVKR-AKQGRAIILTTHSMEEAEALCDR 452
+++R A +G+ II TH ++E A+ DR
Sbjct: 181 EILRRLAAEGKTIIFITHKLKEVMAIADR 209
|
Length = 501 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AV ++L + +GP+G GK+T + + + G A V+G ++ D + +Y
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG-ARVEG-EVLLDGEDLYGP 76
Query: 326 MGVCP-----------QEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 373
GV P Q + T++ R++++ +L ++ L + VE+SL+ NL+
Sbjct: 77 -GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLW 135
Query: 374 HGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
+ V D K G SGG ++RL +A ++ P V+ MDEP + LDP S + +++
Sbjct: 136 NE-VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
KQ I++ TH+M++A + D+ F +L+ G P L
Sbjct: 195 KQDYTIVIVTHNMQQAARVSDQTAFF---NLEATGKPGRL 231
|
Length = 258 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-18
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 9/210 (4%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGV 328
L +P+GE +LGP+GAGK+T ++++ G SG + G+D + SM
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77
Query: 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSVNLFHGGVADKQAGKYSG 387
QE+ L+ LT +++ G LK A + VE + V L G + G+ SG
Sbjct: 78 --QENNLFAHLTVAQNIGL-GLSPGLKLNAEQREKVEAAAAQVGL--AGFLKRLPGELSG 132
Query: 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTTHSMEE 445
G ++R+++A L+ ++ +DEP + LDPA R + +V ++ +++ TH E+
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192
Query: 446 AEALCDRLGIFVDGSLQCIGNPKELKARYG 475
A + DR+ +G + G+ +EL +
Sbjct: 193 AARIADRVVFLDNGRIAAQGSTQELLSGKA 222
|
Length = 231 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-18
Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 9/191 (4%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322
K + +S+ G + ++GP+GAGK+T I ++ + T G+ + G+DI+T D+ +
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+G+ Q+ L+E T ++++ + LK K VE L V L + A +
Sbjct: 76 RRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKN----VDVEYYLSIVGL-NKEYATRDV 129
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTT 440
SGG +R+S+A +L NP+V+ +DEP++ LDP S + ++ + K +I T
Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 441 HSMEEAEALCD 451
H+ME+A+ + D
Sbjct: 190 HNMEQAKRIGD 200
|
Length = 241 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 3e-18
Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 31/239 (12%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
YP R P+ + GLSL +P G+ ++G +G GK+T +S+ + R TSG +
Sbjct: 10 YPSR---PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSL---LERFYDPTSGEILLD 63
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
G+DIR ++ + + +G+ QE +L++ T E++ YG K A + VEE+ K
Sbjct: 64 GVDIRDLNLRWLRSQIGLVSQEPVLFDG-TIAENIR-YG-----KPDATDEEVEEAAKKA 116
Query: 371 N-------LFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
N L G D G+ SGG K+R+++A +L+ NPK++ +DE ++ LD S
Sbjct: 117 NIHDFIMSLPDGY--DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + RA +GR I+ H + D + + +G + G EL A+ G
Sbjct: 175 EKLVQEALDRAMKGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMAQKGVYA 232
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 6e-18
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+ A++ +SL + ++GP+G GK+TF+ + + G V+G +I D + I
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR-VEG-EILLDGENI 75
Query: 323 YTSMGVCPQEDLLWETLTGREHLLF---------------YG-RLKNLKGPA-LTQAVEE 365
Y P D++ L R ++F YG R+ +K A L + VE
Sbjct: 76 YD-----PHVDVV--ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVER 128
Query: 366 SLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
SL+ L+ V D+ A SGG ++RL +A +L P+V+ MDEP++ LDP +
Sbjct: 129 SLRHAALWDE-VKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK 187
Query: 423 LWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+ ++ K II+ TH+M++A + D F G L
Sbjct: 188 IEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226
|
Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 7e-18
Identities = 62/225 (27%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGITRT--TSGTAYVQGLDI-R 316
EK A+ +S+ +P ++GP+G GK+TFI + M + + G ++G DI
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 317 TDMD--RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 374
D+D + ++G+ Q+ + ++ +++ + R+ L VE +L+S L+
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD 142
Query: 375 GGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
+D+ A SGG ++RL +A +L PK++ DEP++ LDP S + +++ K
Sbjct: 143 E-TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK 201
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKE 469
+ I++ TH+M++A + D G F+ G L Q NP+E
Sbjct: 202 KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPRE 246
|
Length = 258 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-18
Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 34/268 (12%)
Query: 193 FLQNFKKKSRSSFRKPSLGRQDSKVFVSMEK-PDVTQERERVEQLLLEPGTSHAIIS--- 248
+++ K + + K + R K +E + E + L +
Sbjct: 266 WIRRGKAAASKA--KKAKSRI--KRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLV 321
Query: 249 ---DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+N+ K Y G ++ + LS + G+ ++GPNGAGK+T + ++ G S
Sbjct: 322 LEFENVSKGYDGG-----RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS 376
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
GT ++ +G Q + L + +L L Q V
Sbjct: 377 GT-------VKV---GETVKIGYFDQH---RDELDPDKTVLEE--LSEGFPDGDEQEVRA 421
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L F G +K G SGG K RL +A L+ P ++ +DEP+ LD S L
Sbjct: 422 YLGRF-GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRL 453
+ +G ++L +H + + R+
Sbjct: 481 ALL-DFEG-TVLLVSHDRYFLDRVATRI 506
|
Length = 530 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 9e-18
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIYTS 325
++G+ L++ G G++GPNGAGKTT + + G T+GT V G D+
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 326 MGVCPQEDLLWETLTGRE--------HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
+ PQ+ L R+ H + AVE +++ +
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW----TETDRAAVERAMERTGV--AQF 132
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAI 436
AD+ SGG ++R+ +A +L V+ +DEP+ LD + +V+R G+
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTA 192
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ H ++ A CD L + DG ++ G P ++
Sbjct: 193 VAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321
+ +S +P G+ ++G NG+GK+T +MIGI + SG + I + ++
Sbjct: 21 ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80
Query: 322 IYTSMGVC---PQEDLLWETLT-----GRE-HLLFYGRLKNLKGPALTQAVEESLKSVNL 372
+ +G+ P + + G E H + Y + + V E+LK V++
Sbjct: 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH--------RRVSEALKQVDM 132
Query: 373 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
AD + SGG K+R+++A L NP V+ +DE ++ LDP +R NL ++V++ K
Sbjct: 133 LE--RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190
Query: 433 GR--AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
II TH + EA D + + G++ G P E+
Sbjct: 191 EHNITIISITHDLSEA-MEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 2e-17
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMMIGIT---RTTSGTAYVQGLDI- 315
+K AV ++L + G ++GP+G GKTTF I+ M +T R T G + G DI
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT-GRILLDGQDIY 74
Query: 316 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNL 372
R D + +G+ Q+ + T++ ++++ +L ++ L + E SL+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 373 FHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+ V D+ A SGG ++RL +A +L P+++ MDEP++ LDPAS + +++
Sbjct: 135 WDE-VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
K+ II+ TH+M +A + D F+ G L
Sbjct: 194 LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
|
Length = 252 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-17
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 291 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY--TSMGVCPQEDLLWETLTGREHLLFY 348
+T + ++ G+ + TSGT + G D R +GV Q+ L+ LT RE+L F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 349 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408
R A +A EE+L+ V L + + G SGG K+R+++A +L+ PK++ +
Sbjct: 61 LR----DKEADARA-EEALERVGLPDF-LDREPVGTLSGGQKQRVAIARALLKKPKLLLL 114
Query: 409 DEPST 413
DEP+
Sbjct: 115 DEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-17
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 16/258 (6%)
Query: 225 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 284
D E+E + L+ P I +N+ Y D + LSL +P GE ++G
Sbjct: 451 DTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD----PPVLEDLSLEIPPGEKVAIVG 506
Query: 285 PNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGVCPQEDLLW-----ET 338
+G+GK+T + +++G+ + G + G+D+ D+ + +G Q+ L+ E
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566
Query: 339 LT-GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397
+ G ++ + L A E + V + A SGG ++RL++A
Sbjct: 567 IALGNPEATDEEIIEAAQ---LAGAHEFIENLPMGYDTPVGEGGAN-LSGGQRQRLALAR 622
Query: 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457
+L+ PK++ +DE ++ LDP + + + + QGR +I+ H + DR+ +
Sbjct: 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRIIVLD 681
Query: 458 DGSLQCIGNPKELKARYG 475
G + G+ +EL A+ G
Sbjct: 682 QGKIVEQGSHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 9/218 (4%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319
+K + G+S +L +GE ++GP+G+GK+T +++GI TSG+ + G D++ D
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHG 375
+ +G PQ+ L+ T E++ +G K ++ L E L+ + +
Sbjct: 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT 446
Query: 376 GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGR 434
+ A SGG ++R+++A +L G+PK+V +DEP++ LD L N +K K +G
Sbjct: 447 VIGPGGAT-LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+++ TH D++ + DG + G E+ A
Sbjct: 506 TVVVITHRP-SLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 49/208 (23%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSGT------ 307
K + +S GE ++G +GAGKTT ++ + + +G
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 308 -----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPAL 359
AYVQ Q+DL TLT REHL+F L+ +
Sbjct: 97 MRAISAYVQ-------------------QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK 137
Query: 360 TQAVEESLKSVNLFHG-----GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414
+ V+E L+++ L GV + G SGG ++RL+ A L+ +P +++ DEP++G
Sbjct: 138 RERVDEVLQALGLRKCANTRIGVPGRVKG-LSGGERKRLAFASELLTDPPLLFCDEPTSG 196
Query: 415 LDPASRNNLWNVVKR-AKQGRAIILTTH 441
LD ++ V+K A++G+ II T H
Sbjct: 197 LDSFMAYSVVQVLKGLAQKGKTIICTIH 224
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-17
Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 28/224 (12%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRI 322
A+ G+++ + GE +LG NGAGK+T + GI + +SG G I R + ++
Sbjct: 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKL 80
Query: 323 YTSMGVCPQEDLLWETLTGREHLLF---------YGRLKNLKGPA--LTQAVEESLKSVN 371
S+G+ Q+ ++ LF +G + NLK P + + V+ +LK
Sbjct: 81 RESVGMVFQDP---------DNQLFSASVYQDVSFGAV-NLKLPEDEVRKRVDNALKRTG 130
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
+ H + DK S G K+R+++A L+ PKV+ +DEP+ GLDP + + ++ +
Sbjct: 131 IEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 432 Q--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+ G II+ TH ++ CD + + +G + GNPKE+ A
Sbjct: 189 KELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 4e-17
Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 282 MLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-DMDRIYTSMGVC------ 329
+GP+G GK+TF+ + G + G+D+ + D + + V
Sbjct: 36 FIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95
Query: 330 -PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYS 386
P +++ + L +G KN K L + VE+SL SV L+ G A + S
Sbjct: 96 NPFPKSIYDNVAYGPKL--HGLAKNKK--KLDEIVEKSLTSVGLWEELGDRLKDSAFELS 151
Query: 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446
GG ++RL +A ++ P ++ MDEP + LDP + N + N+++ K+ II+ THSM++A
Sbjct: 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQA 211
Query: 447 EALCDRLGIFVDGSLQCIGNPKEL 470
+ + DR+ F G + +E+
Sbjct: 212 KKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 4e-17
Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISM------MIGITRTTSGTAYVQGLDIRT-- 317
A+ G+S+ + +GP+G GK+TF+ + +I TR G + G +I
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL-EGEIRIDGRNIYDKG 76
Query: 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFHG 375
+D + ++G+ Q + + E++ + R+ +K A + Q VEE+LK L+
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE 135
Query: 376 GVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
V DK A SGG ++RL +A ++ +P V+ MDEP++ LDP S + ++ K+
Sbjct: 136 -VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK 194
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
I++ TH+M++A + D+ F G +
Sbjct: 195 DYTIVIVTHNMQQAARVSDKTAFFYMGEM 223
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 54/217 (24%), Positives = 107/217 (49%), Gaps = 20/217 (9%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMDRI 322
++G+SL L GE +LGPNGAGK+T + + G SG + G+ + + ++ R
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR- 75
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG---PALTQAVEESLKSVNLFHGGVAD 379
V PQ L T +E + GR+ + G + ++L + +L +A
Sbjct: 76 --HRAVLPQNSSLAFPFTVQEVVQM-GRIPHRSGREPEEDERIAAQALAATDLSG--LAG 130
Query: 380 KQAGKYSGGMKRRLSVAISL------IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQ 432
+ SGG ++R+ +A L + + + +++DEP++ LD A +++ + ++ A++
Sbjct: 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
G A++ H + A DR+ + G + G+P++
Sbjct: 191 GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 19/202 (9%)
Query: 251 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310
LR + G G P ++G+SL LP GE +LGP+G+GK+T ++ + G+ G +
Sbjct: 337 LRDLSAGYPGAPP--VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTL 394
Query: 311 QGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
G+ + + D D + + VC Q+ L++T T RE+L R A + + +L+
Sbjct: 395 DGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRL-AR-----PDATDEELWAALER 447
Query: 370 VNL------FHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
V L G+ + SGG ++RL++A +L+ + ++ +DEP+ LD +
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETA 507
Query: 421 NNLWNVVKRAKQGRAIILTTHS 442
+ L + A GR ++L TH
Sbjct: 508 DELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-17
Identities = 51/199 (25%), Positives = 101/199 (50%), Gaps = 9/199 (4%)
Query: 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVC 329
L + GE ++GP+GAGK+T ++++ G SG+ V + SM
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF- 76
Query: 330 PQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-AVEESLKSVNLFHGGVADKQAGKYSGG 388
QE+ L+ LT R+++ G LK A Q V ++ + V + D+ + SGG
Sbjct: 77 -QENNLFAHLTVRQNIGL-GLHPGLKLNAEQQEKVVDAAQQVGI--ADYLDRLPEQLSGG 132
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEA 446
++R+++A L+ ++ +DEP + LDP R + +VK+ +++ R +++ TH + +A
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192
Query: 447 EALCDRLGIFVDGSLQCIG 465
A+ ++ + G ++ +
Sbjct: 193 RAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 6e-17
Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 28/233 (12%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-------SMMIGITRTTSGTAYVQGLDI 315
E A+ ++L +P+ + ++GP+G GK+T + ++ G+ T G + G DI
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT--GKLTMDGEDI 72
Query: 316 RTDMD----RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSV 370
++D RI M V + + ++ E++ + R + +K L + VE SL+
Sbjct: 73 YGNIDVADLRIKVGM-VFQKPNPF--PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGA 129
Query: 371 NLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
L+ V D+ A SGG ++RL +A ++ P V+ MDEP++ LDP + + + ++
Sbjct: 130 ALWDE-VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKELKAR 473
+ K+ I++ THSM++A + DR F+ G L NPK+ + +
Sbjct: 189 EELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQ 241
|
Length = 249 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-17
Identities = 60/245 (24%), Positives = 118/245 (48%), Gaps = 24/245 (9%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
I + + YP R P++ A++GL+L + GE ++GP+GAGK+T +++
Sbjct: 337 EIEFEQVNFAYPAR---PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393
Query: 305 SGTAYVQGLDIR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
SG + G+D+R D + M + PQ+ +L+ + YGR A + V
Sbjct: 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA--ASVMENIRYGRPD-----ATDEEV 446
Query: 364 EESLKSVNL--FHGGVAD-------KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414
E + ++ + F + + ++ SGG ++R+++A +++ + ++ +DE ++
Sbjct: 447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSA 506
Query: 415 LDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELKAR 473
LD S + ++ +GR ++ H + A L DR+ + G + G EL A+
Sbjct: 507 LDAESEQLVQQALETLMKGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELIAK 564
Query: 474 YGGSY 478
GG Y
Sbjct: 565 -GGLY 568
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 7e-17
Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 13/232 (5%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
H I + +L Y G K A+N ++ P ++GPNGAGK+T GI +
Sbjct: 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 304 TSGTAYVQGLDI-RTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALT 360
TSG+ ++G I + ++ + +G+ Q +D ++ T + + F L +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVA 115
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
V +L + L + D+ SGG K+R+++A + P+V+ +DEP+ GLDP
Sbjct: 116 HRVSSALHMLGLEE--LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
Query: 421 NNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
L + + G +I +TH ++ + D + + G + G +E+
Sbjct: 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-17
Identities = 62/232 (26%), Positives = 119/232 (51%), Gaps = 27/232 (11%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319
+P + + +S +P+G+ ++GP+G+GK+T + ++ +SG+ + G DIR +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 320 DRIYTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 378
D + ++GV PQ+ +L+ +T+ + + YGR A + V E+ K+ + H +
Sbjct: 71 DSLRRAIGVVPQDTVLFNDTI---GYNIRYGRPD-----ATDEEVIEAAKAAQI-HDKIM 121
Query: 379 ------DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
D G K SGG K+R+++A +++ NP ++ +DE ++ LD + + ++
Sbjct: 122 RFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNPKELKARYGGSY 478
+GR I+ H + D+ I V DG + G +EL A+ GG Y
Sbjct: 182 DVSKGRTTIVIAHRLSTI-VNADK--IIVLKDGRIVERGTHEELLAK-GGLY 229
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 17/232 (7%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +N+ K Y KV ++ +SL +P G ++GPNGAGK+T +SMM + + S
Sbjct: 2 ITIENVSKSYGT------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS 55
Query: 306 GTAYVQGLDI-RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT---- 360
G + GL++ T + + + QE+ + LT R+ L+ +GR +G LT
Sbjct: 56 GEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD-LVGFGRFPYSQG-RLTKEDR 113
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+ + E+++ ++L ++D+ + SGG ++R +A+ L + V +DEP LD
Sbjct: 114 RIINEAIEYLHL--EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 421 NNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ +++R + G+ I++ H + A D + +G + G+P E+
Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-16
Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 11/210 (5%)
Query: 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDRIYT 324
+ + L + GE ++GP+G+GK+T + + + TSG V GL + D I
Sbjct: 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77
Query: 325 SMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
G+ Q+ L+ LT E+++F G R++ + E L V L A
Sbjct: 78 EAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEEAEKQARELLAKVGL--AERAHHYP 134
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTH 441
+ SGG ++R+++A +L PK++ DEP++ LDP R+ + V++ A++G +++ TH
Sbjct: 135 SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194
Query: 442 SMEEAEALCDRLGIFVD-GSLQCIGNPKEL 470
+ AE + RL IF+D G + G+P+ L
Sbjct: 195 EIGFAEKVASRL-IFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (197), Expect = 2e-16
Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----YVQGLDI 315
N K ++ L+L + + +GP+G GK+TF+ + + GT+ Y G +
Sbjct: 92 NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLF----YGRLKN--LKGPALTQAVEESLKS 369
R+ + +S+ + + ++++ T E +F YG N L + VE+SLKS
Sbjct: 152 RS---KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS 208
Query: 370 VNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
L+ DK SGG ++RL +A ++ P+V+ MDEP++ LDP + + ++
Sbjct: 209 AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
K+ +II+ THSM +A+ + D F G ++ G K +
Sbjct: 269 LELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311
|
Length = 329 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 2e-16
Identities = 59/222 (26%), Positives = 113/222 (50%), Gaps = 14/222 (6%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLD 314
GN E A++G+SL E ++GP+G GK+TF+ + + +G +G +
Sbjct: 15 GNYE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 315 I---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSV 370
I + D+ + +G+ Q+ + + +++ + ++ +K L Q VEESLK
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQA 131
Query: 371 NLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
++ D+ A +SGG ++R+ +A +L PKVV +DEP++ LDP S + + +
Sbjct: 132 AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM 191
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
K I+ TH++++A + D+ ++G L G +E+
Sbjct: 192 ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 41/213 (19%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
+ +SL + +GEC + GP+GAGK+T + + SG V+ D+ +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA--- 79
Query: 326 MGVCPQEDLLWETLTGREHLLFYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQA- 382
E L R + Y L+ + + + V E L GV + A
Sbjct: 80 --------SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-----GVPREAAR 126
Query: 383 ---------------------GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
+SGG ++R+++A I + ++ +DEP+ LD A+R
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 422 NLWNVVKRAK-QGRAIILTTHSMEEAEALCDRL 453
+ ++ AK +G A+I H E E + DR+
Sbjct: 187 VVVELIAEAKARGAALIGIFHDEEVRELVADRV 219
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 16/222 (7%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT-S 325
V+G+ + P G G+LGPNG+GK+T + ++ G R +GT + G+D+ R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 326 MGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLKSVNLFHGGVADK 380
+ + Q+ LT R+ + GR L P V+ +L L H +AD+
Sbjct: 77 VALVEQDSDTAVPLTVRDVVAL-GRIPHRSLWAGDSPHDAAVVDRALARTELSH--LADR 133
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILT 439
SGG ++R+ VA +L PK++ +DEP+ LD ++ +V+ A G ++
Sbjct: 134 DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAA 193
Query: 440 THSMEEAEALCDRLGIFVDGSLQCIGNPKE------LKARYG 475
H + A + CD + + G + G P+E ++A YG
Sbjct: 194 LHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYG 235
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-16
Identities = 59/224 (26%), Positives = 114/224 (50%), Gaps = 23/224 (10%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDI---R 316
A+ ++L + + ++GP+G GK+TF+ + I + G + G DI
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE-GEVLLDGQDIYKSD 76
Query: 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFHG 375
D++++ +G+ Q+ + ++ +++ + R +K L + VE+SLK L+
Sbjct: 77 IDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE 135
Query: 376 GVAD---KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
V D K A SGG ++RL +A +L P+V+ MDEP++ LDP S + +++ K+
Sbjct: 136 -VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKE 469
I++ TH+M++A + D+ F++G + NPK+
Sbjct: 195 DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKD 238
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 22/210 (10%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----------- 315
+ +SL++ GE G+LG +G GK+T +++G+ + GT +G D+
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 316 RTDMDRIYTSM--GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
R D+ ++ V P+ + HL +L + E L V L
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT------SLDESEQKARIAELLDMVGL- 139
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ- 432
ADK + SGG +R+++A +L PK++ +DE + LD + + ++++ +Q
Sbjct: 140 RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199
Query: 433 -GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
G A + TH + ++ C R+ + G +
Sbjct: 200 FGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 9/210 (4%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324
++ L+L + G +LGP+G GKTT + ++ G+ + T G ++ G D+ R
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV---THRSIQ 76
Query: 325 SMGVCP--QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+C Q L+ ++ E++ + ++ + Q V+E+L+ V+L G D+
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL--AGFEDRYV 134
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--ILTT 440
+ SGG ++R+++A +LI PKV+ DEP + LD R ++ ++ +Q I + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVT 194
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
H EA A+ D + + G + IG+P+EL
Sbjct: 195 HDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (192), Expect = 4e-16
Identities = 52/219 (23%), Positives = 112/219 (51%), Gaps = 12/219 (5%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR------TTSGTAYVQGLDI- 315
+K + +++ +P+ FG++GP+G+GK+T + ++ + G G DI
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH 374
+ D ++ +G+ Q+ + L+ +++ + + +K + + VEE L+ V L+
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 375 GGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
V D+ A + SGG ++RL++A +L PKV+ MDEP++ +D + + ++ K
Sbjct: 142 E-VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
AI++ +H+ ++ + D + +G L G+ E+
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-16
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIR 316
P + ++ + GE ++GP+G GK+T +S MIG +G ++ +
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70
Query: 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
+ +G+ Q+ LL+ L+ ++LLF LKG A A +L+ L G
Sbjct: 71 M-LPAAQRQIGILFQDALLFPHLSVGQNLLF-ALPATLKGNARRNAANAALERSGL--DG 126
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL--WNVVKRAKQGR 434
+ SGG + R+++ +L+ PK + +DEP + LD A R+ W + G
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 435 AIILTTHSMEEAEA 448
+ TH +++ A
Sbjct: 187 PTVQVTHDLQDVPA 200
|
Length = 213 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 4e-16
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 46/210 (21%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---DRI 322
+ G+SL +P GE +LG NG GKTT + ++G+ SG+ + G DI T + +R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI-TKLPPHERA 73
Query: 323 YTSMGVCPQEDLLWETLTGREHLL--FYGRLKNLKG---------PALTQAVEESLKSVN 371
+ PQ ++ LT E+LL + + P L +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE---------- 123
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--- 428
+ ++ G SGG +++L++A +L+ PK++ +DEP+ G+ P +++K
Sbjct: 124 -----MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP-------SIIKDIG 171
Query: 429 ------RAKQGRAIILTTHSMEEAEALCDR 452
RA+ G AI+L ++ A L DR
Sbjct: 172 RVIRRLRAEGGMAILLVEQYLDFARELADR 201
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-16
Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 47/283 (16%)
Query: 221 MEKPDVTQERERVEQLLLEPG-----------TSHAIISDNLRKIYPGRDGNPEKVAVNG 269
V R+ +L + T A+ N+ YP + A+
Sbjct: 301 QHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYP----GQQTKALKN 356
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVC 329
+L L GE +LG +G+GK+T + ++ G G+ + G++I
Sbjct: 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA------------S 404
Query: 330 PQEDLLWET---LTGREHLLFYGRLK-NL---KGPALTQAVEESLKSVNL---------- 372
E L ET LT R H LF G L+ NL A + + +L+ V L
Sbjct: 405 LDEQALRETISVLTQRVH-LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDG 463
Query: 373 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
+ + + SGG +RRL++A +L+ + + +DEP+ GLDP + + ++ +
Sbjct: 464 LNTWLGEGGRR-LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
G+ +++ TH + E DR+ + +G + G EL A G
Sbjct: 523 GKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-16
Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A+ ++L + GE +LG NGAGK+T + ++ GI T GT + ++ ++
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79
Query: 326 MG--VCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVA-- 378
+G + QE + + LT E+ L+ GR K + ++ L G+
Sbjct: 80 LGIGIIYQELSVIDELTVLEN-LYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD 138
Query: 379 -DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAI 436
D++ S K+ L +A +L+ + KV+ MDEP++ L + L+ ++ + K+G AI
Sbjct: 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAI 198
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ +H + E +CDR + DGS C G ++
Sbjct: 199 VYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
Length = 510 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 23/227 (10%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 321
E + G+SL +G+ ++G +G+GK+TF+ + + + + G+ V G I D+
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 322 -------------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
+ T + + Q LW +T E+++ ++ L G + +A E ++K
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVL-GLSKQEARERAVK 134
Query: 369 SVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+ G+ ++ GKY SGG ++R+S+A +L P+V+ DEP++ LDP +
Sbjct: 135 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 425 NVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++++ A++G+ +++ TH M A + + G ++ G P++L
Sbjct: 193 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDIR 316
+K A+ G+ + + ++GP+G+GK+T++ + I I R T Y +G+DI
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY-RGIDIN 90
Query: 317 TDMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNL 372
+Y +G+ Q + + E++ F +K L + VE SLK L
Sbjct: 91 RKEINVYEMRKHIGMVFQRPNPF-AKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL 149
Query: 373 FHGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+ V D K A SGG ++RL +A ++ P ++ MDEP++ LDP S L +
Sbjct: 150 WDQ-VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
K+ II+ TH+M++A D F G L
Sbjct: 209 LKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240
|
Length = 267 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 12/204 (5%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIY 323
A++G+ L + GEC G+ G NGAGK+T + ++ G+ T G Y G ++ R
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 324 TSMGVC--PQEDLLWETLTGREHLLFYGRLKNLKG-----PALTQAVEESLKSVNLFHGG 376
G+ QE L L+ E+ +F G L G A+ + L+ + L
Sbjct: 76 ERAGIVIIHQELTLVPELSVAEN-IFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRA 435
V + G Y GG ++ + +A +L +++ +DEPS+ L L ++++ K G A
Sbjct: 135 VT-RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVA 193
Query: 436 IILTTHSMEEAEALCDRLGIFVDG 459
+ +H + E +A+CD + + DG
Sbjct: 194 CVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 60/228 (26%), Positives = 113/228 (49%), Gaps = 25/228 (10%)
Query: 259 DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------ 312
+ EK +N +S + GE ++G NG+GK+T + ++ G+ SG + G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE 74
Query: 313 --LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA---VEESL 367
DIR + ++ + P + T+ E + +G L+N KG + V E+L
Sbjct: 75 NVWDIRHKIGMVFQN----PDNQFVGATV---EDDVAFG-LEN-KGIPHEEMKERVNEAL 125
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
+ V + +++ + SGG K+R+++A ++ PK++ +DE ++ LDP R L +
Sbjct: 126 ELVGM--QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183
Query: 428 KRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
K + +I TH ++E AL DR+ + +G ++ P+EL +R
Sbjct: 184 KGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230
|
Length = 279 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 4e-15
Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 33/227 (14%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDI---RTDMD 320
++L +P ++GP+G GK+TFI + I R G Y+ G+DI D+
Sbjct: 22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH-EGHIYLDGVDIYDPAVDVV 80
Query: 321 RIYTSMGVC-----PQEDLLWETLTGREHLLFYG-RLKNLKGP-ALTQAVEESLKSVNLF 373
+ +G+ P +++ + YG R+ + + VEESLK+ L+
Sbjct: 81 ELRKKVGMVFQKPNPFPKSIFDNVA-------YGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 374 H--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
DK A SGG ++RL +A ++ +P+V+ MDEP + LDP S + +++ + K
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKELK 471
+ I++ TH+M++A + F++G + Q NPK+ +
Sbjct: 194 EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKR 240
|
Length = 250 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 22/234 (9%)
Query: 239 EPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298
I N+ G K + LS + GE + ++GPNGAGKTT +S++
Sbjct: 25 IEINEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT 78
Query: 299 GITRTTSGTAYVQGLDI-RTDMDR-IYTSMGVCP---QEDLLWETLTGREHLL--FY--- 348
G +SG + G + + + +G+ E T R+ +L F+
Sbjct: 79 GEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE-TVRDVVLSGFFASI 137
Query: 349 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408
G + A + L+ + H +AD+ G S G +RR+ +A +L+ +P+++ +
Sbjct: 138 GIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRRVLIARALVKDPELLIL 195
Query: 409 DEPSTGLDPASRNNLWNVVKR---AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
DEP+ GLD +R L N ++ + A++ TH EE + +G
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
|
Length = 257 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 4e-15
Identities = 58/212 (27%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDI- 315
EK A+N ++L + + ++GP+G GK+TF+ + I + G + G +I
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIY 74
Query: 316 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNL 372
D+ + +G+ Q+ + ++ +++ + R+ +K L + VE +LK L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAAL 133
Query: 373 FHGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+ V D K A K SGG ++RL +A ++ P V+ MDEP++ LDP S + +++
Sbjct: 134 WDE-VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
K+ I++ TH+M++A + D F+ G L
Sbjct: 193 LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224
|
Length = 251 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-15
Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 48/258 (18%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
AI NL K + G + ++G+ L + GE ++GP+G+GKTT + + + +
Sbjct: 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL--------LFYGR--LKNL 354
+GT V DI D R S+ Q+ L+ + R+H+ LF R L+N+
Sbjct: 57 AGTIRVG--DITIDTAR---SLS--QQKGLIRQL---RQHVGFVFQNFNLFPHRTVLENI 106
Query: 355 -------KGPALTQAVE---ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404
KG +A E L V L G + SGG ++R+++A +L P+
Sbjct: 107 IEGPVIVKGEPKEEATARARELLAKVGL--AGKETSYPRRLSGGQQQRVAIARALAMRPE 164
Query: 405 VVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-- 461
V+ DEP++ LDP + N +++ A++ R +++ TH M A + DR IF+D
Sbjct: 165 VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADR-AIFMDQGRIV 223
Query: 462 ------QCIGNPKELKAR 473
+P++ + R
Sbjct: 224 EQGPAKALFADPQQPRTR 241
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 61/212 (28%), Positives = 109/212 (51%), Gaps = 15/212 (7%)
Query: 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT--- 324
N +SL +PSG+ +LGP+G+GKTT + ++ G+ TSG G TD+ R++
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG----TDVSRLHARDR 74
Query: 325 SMGVCPQEDLLWETLTGREHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380
+G Q L+ +T +++ F R + A+ V + L+ V L H +AD+
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH--LADR 132
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--IL 438
+ SGG K+R+++A +L P+++ +DEP LD R L +++ + +
Sbjct: 133 YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192
Query: 439 TTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
TH EEA + DR+ + G+++ G P ++
Sbjct: 193 VTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-15
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 24/258 (9%)
Query: 228 QERERVEQLLLE----------PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSG 277
Q +R+ +LL E P A+ + L PG+ +K + G+S AL +G
Sbjct: 307 QSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQ----KKPILKGISFALQAG 362
Query: 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLW 336
E G++GP+G+GK+T +++GI TSG+ + G D+R D +++ +G PQ+ L+
Sbjct: 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422
Query: 337 ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392
+ T E++ +G K ++ L E L+ + + + A SGG ++R
Sbjct: 423 DG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT-LSGGQRQR 480
Query: 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 451
+++A +L G+P +V +DEP++ LD L + AK +G +++ H A A D
Sbjct: 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR-PSALASVD 539
Query: 452 RLGIFVDGSLQCIGNPKE 469
++ + DG + G P+E
Sbjct: 540 KILVLQDGRIAAFG-PRE 556
|
Length = 580 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 5e-15
Identities = 56/218 (25%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A+N +++ + ++GP+G GK+TF+ + + G ++G ++ + IY++
Sbjct: 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK-IEG-NVIYEGKNIYSN 79
Query: 326 ----MGVCPQEDLLWET-----LTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHG 375
+ + + ++++T ++ +++ + ++ K L + VE+SLK L++
Sbjct: 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE 139
Query: 376 GVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
V DK A SGG ++RL +A +L P V+ MDEP++ LDP S + ++ K+
Sbjct: 140 -VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
II+ TH+M++A + DR F++G ++ + EL
Sbjct: 199 SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 42/225 (18%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMM---IGITRTTSGTAYVQGLDIR 316
+K A+ +S+ +P +GP+G GK+T + M + R ++G +IR
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR-------IEG-EIR 88
Query: 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLLF---------------YG-RLKNLKGPA-L 359
D IY + D+ L R ++F YG RL+ + L
Sbjct: 89 LDGQNIYD-----KKVDVA--ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141
Query: 360 TQAVEESLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
+AVE SL+ L+ V D+ A SGG ++RL +A ++ P+V+ +DEP++ LD
Sbjct: 142 DEAVERSLRGAALWDE-VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
Query: 417 PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
P S + ++ K I++ TH+M++A + D G L
Sbjct: 201 PISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245
|
Length = 272 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 5e-15
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 34/199 (17%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--DRIY 323
AV +S + +GE G+ G G G+T + G+ SG + G + D I
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+ P ED R + G L +V E++ +L
Sbjct: 75 AGIAYVP-ED----------------RKRE--GLVLDLSVAENIALSSLL---------- 105
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHS 442
SGG ++++ +A L +P+V+ +DEP+ G+D ++ ++ +++ A G+A++L +
Sbjct: 106 --SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163
Query: 443 MEEAEALCDRLGIFVDGSL 461
++E LCDR+ + +G +
Sbjct: 164 LDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 52/189 (27%), Positives = 98/189 (51%), Gaps = 9/189 (4%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---- 315
G+ K + ++L + GE + GP+G+GKTT ++++ G+ G+ V G ++
Sbjct: 14 GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS 73
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH 374
++ ++ ++G Q L LT R+++ L+ NL + L++V L
Sbjct: 74 EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGL-- 131
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-Q 432
G D SGG K+R+++A +L+ PK+V DEP+ LD S ++ ++++ A+ Q
Sbjct: 132 GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 433 GRAIILTTH 441
G I++ TH
Sbjct: 192 GCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 8e-15
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 41/179 (22%)
Query: 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA----YVQGLDIRTDMDRIY 323
N +S + G ++G +GAGKTT + ++ G R T+G + G + + R
Sbjct: 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVITGEILINGRPLDKNFQRS- 80
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
G Q+D+ LT RE L F L+G ++ Q
Sbjct: 81 --TGYVEQQDVHSPNLTVREALRFSA---LLRGLSVEQ---------------------- 113
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTH 441
++RL++ + L P ++++DEP++GLD + N+ +K+ A G+AI+ T H
Sbjct: 114 ------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 8e-15
Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 25/223 (11%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMM------------IGITRTTSGTAYVQGL 313
AV +S+ P ++GP+G GK+T + + G Y +G+
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 314 D---IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
D IR + ++ P + + G + GR+ + + VE SLK V
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK---LNGRVNRSEADEI---VESSLKRV 132
Query: 371 NLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
L+ V D+ A + SGG ++RL +A ++ P+V+ MDEP++ LDP S + ++
Sbjct: 133 ALWDE-VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ K+ II+ TH+M++A + D F G L G K++
Sbjct: 192 EELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234
|
Length = 252 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQG--LD 314
EK A+ +++++P ++GP+G GK+T + I R T Y +D
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 315 IRTDMDRIYTSMGVC-----PQEDLLWETLTGREHLLFYG-RLKNLKGP-ALTQAVEESL 367
D+ + +G+ P ++E + YG R+ K L VE+SL
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVA-------YGPRIHGEKNKKTLDTIVEKSL 130
Query: 368 KSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
K L+ V D+ A SGG ++RL +A +L NP+V+ MDEP + LDP + +
Sbjct: 131 KGAALWDE-VKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189
Query: 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNP-KELKARY 474
++++ K+ +I+ TH+M++A + D G G L Q NP +EL Y
Sbjct: 190 DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENY 247
|
Length = 253 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 24/222 (10%)
Query: 249 DNLRKIYPGRDGNPEKV-AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307
D + K +PG V A++ +S +G+ ++G NGAGK+T + ++ G + +G+
Sbjct: 8 DGIGKTFPG-------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 308 AYVQGLDIR--TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG----PALTQ 361
+ G ++R + + + + QE L +T E+L G+L + G L
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYL-GQLPHKGGIVNRRLLNY 119
Query: 362 AVEESLKSVNLFHGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
E L+ H GV D S G ++ + +A +L N +V+ DEP++ L
Sbjct: 120 EAREQLE-----HLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174
Query: 419 SRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDG 459
L+ V++ + +GR I+ +H MEE ALCD + +F DG
Sbjct: 175 EIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-14
Identities = 55/229 (24%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 320
+ +K + ++ ++ GE ++GP GAGKTT I++++ G + G+DIR D+
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DIS 71
Query: 321 RIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---- 374
R + +GV Q+ L+ T E++ GR + V E+ K
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENIR-LGRPNATD-----EEVIEAAKEAGAHDFIMK 124
Query: 375 --GG---VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
G V + G S G ++ L++A +++ +PK++ +DE ++ +D + + +++
Sbjct: 125 LPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK 184
Query: 430 AKQGRAIILTTH---SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+GR I+ H +++ A D++ + DG + G EL A+ G
Sbjct: 185 LMKGRTSIIIAHRLSTIKNA----DKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 62/226 (27%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319
+K + +S ++ GE ++GP+G+GK+T I +++ + TSG + G+DIR +
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379
D + +G+ Q+ LL+ T RE++ GR A + +EE+LK N H +A+
Sbjct: 399 DSLRKRIGIVSQDPLLFSG-TIRENIA-LGRPD-----ATDEEIEEALKLANA-HEFIAN 450
Query: 380 KQAGKY----------SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
G SGG ++RL++A +L+ NP ++ +DE ++ LD + + + +K+
Sbjct: 451 LPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK 510
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+GR ++ H + + DR+ + +G + G +EL A+ G
Sbjct: 511 LLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
+A+ ++L K Y G E + G+SL +G+ ++G +G+GK+TF+ + +
Sbjct: 3 AENALEVEDLHKRY----GEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 56
Query: 302 RTTSGTAYVQGLDIRTDMD--------------RIYTSMGVCPQEDLLWETLTGREHLLF 347
+ ++G+ V G +IR D R+ T +G+ Q LW +T E+++
Sbjct: 57 KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE 116
Query: 348 YGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405
L K A+ +A E+ L V + AD SGG ++R+++A +L P+V
Sbjct: 117 APVHVLGVSKAEAIERA-EKYLAKVGIAEK--ADAYPAHLSGGQQQRVAIARALAMEPEV 173
Query: 406 VYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464
+ DEP++ LDP + V++ A++GR +++ TH M A + + G ++
Sbjct: 174 MLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233
Query: 465 GNPKEL 470
G P+++
Sbjct: 234 GPPEQV 239
|
Length = 256 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 38/202 (18%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
E+ + LSL L GE +LG +G+GK+T + ++ G + G + G+ +
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379
+ + + V Q L++T T R +L GR
Sbjct: 71 KALSSLISVLNQRPYLFDT-TLRNNL---GR----------------------------- 97
Query: 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 439
++SGG ++RL++A L+ + +V +DEP+ GLDP + L +++ + + +I
Sbjct: 98 ----RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153
Query: 440 THSMEEAEALCDRLGIFVDGSL 461
TH + E + D++ +G +
Sbjct: 154 THHLTGIEHM-DKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 28/251 (11%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGIT 301
AI + NLR +Y G + + G+ L +P F ++GP+G GK+T + + ++ +
Sbjct: 4 AIETVNLR-VYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57
Query: 302 RTT--SGTAYVQGLDIRT-DMD--RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356
G + G +I + D+D + +G+ Q + LT +++ +L L
Sbjct: 58 EEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK 117
Query: 357 PA--LTQAVEESLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
L + VE +LK L+ V D+ SGG ++RL +A +L PK++ MDEP
Sbjct: 118 SKKELDERVEWALKKAALWDE-VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 412 STGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG------ 465
+ +DP + ++ K+ I+L THS +A + D + G L +G
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
Query: 466 -NPK-ELKARY 474
NP+ EL +Y
Sbjct: 237 ENPEHELTEKY 247
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 12/219 (5%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDI-- 315
EK AV +++ + + ++GP+G GKTT + + + G Y +G DI
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 316 -RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 373
+ D+ +G+ Q+ + ++ +++ F R+ +K L + VEESLK L+
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALW 133
Query: 374 H--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
+K + SGG ++RL +A +L P+V+ +DEP++ LDP + + +++
Sbjct: 134 DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS 193
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ I++ TH++ +A + D + G L G +E+
Sbjct: 194 ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232
|
Length = 250 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
Y G K A+ ++L L SGE +LGP+G GKTT ++++ G G+ + G
Sbjct: 11 YGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP 64
Query: 315 IR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
+ +R GV Q + L ++++ F +L ++ + + LK V L
Sbjct: 65 VEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL- 118
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AK 431
G + + SGG ++R+ +A +L NP+++ +DEP LD +R + ++ + +
Sbjct: 119 -EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177
Query: 432 QGRAIILTTHSMEEA 446
G+ ++L TH +EEA
Sbjct: 178 TGKQVLLITHDIEEA 192
|
Length = 255 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 15/229 (6%)
Query: 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307
D L+ ++ A+N +S +P GE G++G NG+GK+T +++ G+T GT
Sbjct: 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT 80
Query: 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+DI+ I S G+ Q LTG E++ G + L + + + E +
Sbjct: 81 -----VDIKGSAALIAISSGLNGQ-------LTGIENIELKGLMMGLTKEKIKEIIPEII 128
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP-STGLDPASRNNLWNV 426
+ ++ G + YS GMK RL AIS+ NP ++ +DE S G ++ L +
Sbjct: 129 EFADI--GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
Query: 427 VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+ +QG+ I +HS+ + ++ C + G ++ G+ KE+ Y
Sbjct: 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235
|
Length = 549 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 2e-14
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 23/220 (10%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--LDIRTDMDRIYT 324
+ GL+L G++G NG GK+T + G+ R G QG LD Y+
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD--------YS 68
Query: 325 SMGVCPQEDLLWETLTGREHLLFYG--------RLKNLKGPA--LTQAVEESLKSVNLFH 374
G+ + E +FY L+NL P +T+ V+E+L V+ H
Sbjct: 69 KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH 128
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQG 433
Q S G K+R+++A +L+ + + +DEP+ GLDPA R + +++R QG
Sbjct: 129 FRHQPIQC--LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+I+++H ++ + D + + G + G P E+ A
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
|
Length = 271 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 51/205 (24%), Positives = 110/205 (53%), Gaps = 14/205 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTF---ISMM---IGITRTTSGTAYVQGLDI-RTD 318
A++ +S+ +P + M+GP+G GK+TF I+ M I R G +G ++ D
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV-EGELTFRGKNVYDAD 112
Query: 319 MDRI--YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-- 374
+D + +G+ Q+ + + +++ + +++ G + + VEESL+ L+
Sbjct: 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGD-IDERVEESLRRAALWDEV 170
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
D SGG ++RL +A ++ +P+V+ MDEP++ LDP + + + ++++ +
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 435 AIILTTHSMEEAEALCDRLGIFVDG 459
+++ TH+M++A + D+ +F+ G
Sbjct: 231 TVVIVTHNMQQAARISDKTAVFLTG 255
|
Length = 285 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 29/234 (12%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP R P+ + GL+ L GE ++GP+G+GK+T +++ + + T G + G+
Sbjct: 488 YPNR---PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544
Query: 315 IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV---- 370
+ D Y V L G+E +LF G ++ LT +E + +
Sbjct: 545 LV-QYDHHYLHRQV---------ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAA 594
Query: 371 -------NLFHG--GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
+G ++ + SGG K+R+++A +L+ P+V+ +DE ++ LD
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654
Query: 422 NLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
L R++ R ++L H + E D++ + GS+ +G K+L G
Sbjct: 655 LLQE--SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 4e-14
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 14/203 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---------DIR 316
A+ G+S+ + + ++GP+G GK+TFI + I+ G V+G+ D R
Sbjct: 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL-EGPVKVEGVVDFFGQNIYDPR 80
Query: 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH- 374
+++R+ +G+ Q + ++ E++ + R+ L L + VE +LK L+
Sbjct: 81 ININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE 139
Query: 375 -GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQG 433
+K A SGG ++RL +A +L PKV+ MDEP + LDP + + ++ +
Sbjct: 140 VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE 199
Query: 434 RAIILTTHSMEEAEALCDRLGIF 456
I + TH+M++A + D F
Sbjct: 200 LTIAIVTHNMQQATRVSDFTAFF 222
|
Length = 259 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 5e-14
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 50/239 (20%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
L K Y G G +S L GE G++G +G+GK+T + + G GTA
Sbjct: 8 GLSKSYGGGKG------CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
Query: 310 VQGLD-----------------IRTDMD----------RIYTSMGVCPQEDLLWETLTGR 342
+RT+ R+ S G E L+ G
Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM---AIGA 118
Query: 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402
H YG ++ ++ L+ V + + D +SGGM++RL +A +L+
Sbjct: 119 RH---YGNIR--------ATAQDWLEEVEIDPTRIDDLPR-AFSGGMQQRLQIARNLVTR 166
Query: 403 PKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
P++V+MDEP+ GLD + + L ++++ G A+I+ TH + A L RL + G
Sbjct: 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 61/340 (17%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 318
+ V+ SL + GE ++G +G+GK+T + + G+ + G+ V+ D D
Sbjct: 38 LGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDA 97
Query: 319 -------MDRIYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
R+ SM V Q LL W T E++ F ++ + + V+E L+ V
Sbjct: 98 ATLRRLRTHRV--SM-VFQQFALLPW--RTVEENVAFGLEMQGMPKAERRKRVDEQLELV 152
Query: 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR- 429
L AD++ G+ SGGM++R+ +A + ++ MDEP + LDP R L + +
Sbjct: 153 GL--AQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 430 -AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-QCIGNPKELKARYGGSYV-------- 479
+K + I+ +H ++EA + +R+ I G + Q G P+E+ YV
Sbjct: 211 QSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQH-GTPEEIVLNPANDYVADFVAHTN 269
Query: 480 -FTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRF 538
+ T+ D + ++ K + + +S L + +V A +
Sbjct: 270 PLNVLTARDLMRPLTTLEK-----VDGEWCVSKRYDTWLKTADKQVR-------RAAAGL 317
Query: 539 TVFAWG---------------LADTTLEDVFIKVARHAQA 563
V AW DT + DV R A
Sbjct: 318 PVAAWAAEQEVESLEKLPTVINPDTPMRDVLAARHRTGGA 357
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-14
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 40/236 (16%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
EK A+ + L +P +GP+G GK+TF+ + + T G V G I D + I
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG-CRVTG-KITLDGEDI 88
Query: 323 Y-TSMGVCPQEDLLWETLTGREHLLF---------------YG-RLKNL-KGPA-LTQAV 363
Y + V L R ++F YG R+ L + A L + V
Sbjct: 89 YDPRLDVVE--------LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIV 140
Query: 364 EESLKSVNLFHGGVADK--QAGK-YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
E SL+ L+ V D+ + G SGG ++RL +A ++ +P+V+ MDEP + LDP +
Sbjct: 141 ETSLRKAGLW-EEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG-------NPKE 469
+ ++ +Q I++ THSM++A + R F G+L +G NP +
Sbjct: 200 AKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDD 255
|
Length = 267 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 6e-14
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSME 444
S G ++ + +A +L N +++ +DEP+ L PA L+ V++R QG A+I +H ++
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143
Query: 445 EAEALCDRLGIFVDG 459
E + DR+ + DG
Sbjct: 144 EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-14
Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Query: 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT--- 324
G+ L + GE ++GP+G+GK+T ++++ G+ +SG + G + + D D
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRA 87
Query: 325 -SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+G Q L LT E++ L+ + L++V L G
Sbjct: 88 RHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGL--GKRLTHYPA 145
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV--KRAKQGRAIILTTH 441
+ SGG ++R+++A + G P V++ DEP+ LD A+ + + +++ ++G ++L TH
Sbjct: 146 QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205
Query: 442 SMEEAEALCDRLGIFVDGSLQ 462
+ A A CDR G L
Sbjct: 206 DPQLA-ARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 8e-14
Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 17/220 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGITRTTSGTAYVQGLDIRT-D 318
+K A+ +++ + + ++G +G GK+TF+ + M G ++G D++ D
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 319 MDRIYTSMGVCPQE-----DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
+ + ++G+ Q+ ++E ++ L +G +KN V + L+ V LF
Sbjct: 74 VVALRKNVGMVFQQPNVFVKSIYENISYAPKL--HGMIKNKDEE--EALVVDCLQKVGLF 129
Query: 374 HGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
V DK A SGG ++RL +A +L PK++ +DEP++ LDP S + ++K
Sbjct: 130 EE-VKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL 188
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++I+ TH+M++ + + D F G L G KE
Sbjct: 189 SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 22/235 (9%)
Query: 246 IIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
II +++ YP + A+ +S ++ GE ++G NG+GK+T ++ G+
Sbjct: 5 IIRVEHISFRYP----DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60
Query: 305 SGTAYVQG--LDIRTDMDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGP--AL 359
+GT V G L T D + +G+ Q D + T ++ + F L+N+ P +
Sbjct: 61 AGTITVGGMVLSEETVWD-VRRQVGMVFQNPDNQFVGATVQDDVAF--GLENIGVPREEM 117
Query: 360 TQAVEESLKSVNL--FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417
+ V+++L+ V + F +++ + SGG K+R+++A L P ++ +DE ++ LDP
Sbjct: 118 VERVDQALRQVGMEDF----LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 418 ASRNNLWNVVKRAK-QGRAIILT-THSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
R + V++ K Q +L+ TH ++EA A DR+ + G + G P+E+
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 35/218 (16%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +NL Y R + +SL L GE G++G NGAGK+T + ++ G S
Sbjct: 4 ITLENLSLAYGDR------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57
Query: 306 GT---------AYV----QGLDIRTDMDRIYTSMGVCPQEDLLWE---------TLTGRE 343
G Y+ +T +D Y G +LL E
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLD--YVIEGFGELRELLAELEEAYALLADPDDEL 115
Query: 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403
L+ L G L EE+L + D+ SGG +RR+++A +L+ P
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGF---PDEDRPVSSLSGGWRRRVALARALLEEP 172
Query: 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
++ +DEP+ LD S L + +KR +I+ +H
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRYP--GTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 250 NLRKI-YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N K + G EK A+NGLSL + G+ ++G NGAGK+T ++ + G + TSG
Sbjct: 6 NATKTFFKGTP--LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63
Query: 309 YVQGLDI-------RTDM-DRIYTS--MGVCP----QEDL-LWETLTGREHLLFYGRLKN 353
+ G+D+ R ++ R++ G P +E+L L E+ + L
Sbjct: 64 LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA----- 118
Query: 354 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
+ E L + L + G SGG ++ LS+ ++ + PK++ +DE +
Sbjct: 119 -LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177
Query: 414 GLDPASRNNLWNVVKRAKQGRAI--ILTTHSMEEAEALCDRL 453
LDP + + + + + + ++ TH+ME+A +RL
Sbjct: 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRL 219
|
Length = 263 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--LDIRTDMD-----RI 322
++L P GE +LGP+GAGK++ + ++ + SGT + G D +
Sbjct: 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADK 380
++G+ Q+ LW LT +E+L+ L K AL +A E+ LK + L AD+
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA-EKLLKRLRL--KPYADR 137
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILT 439
SGG ++R+++A +L+ P+V+ DEP+ LDP + +++K A+ G ++
Sbjct: 138 YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIV 197
Query: 440 THSMEEAEALCDRL-----GIFVD-GSLQCIGNPK 468
TH +E A R+ G V+ G C P+
Sbjct: 198 THEVEVARKTASRVVYMENGHIVEQGDASCFTEPQ 232
|
Length = 242 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 255 YPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313
Y + G P E A+ ++L + G +G G+GK+T + ++ G+ T G+ V
Sbjct: 10 YTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDT 69
Query: 314 DIRT-----DMDRIYTSMGVC---PQEDLLWETLTGREHLLFYGRLKNLK-GP---ALTQ 361
I + D+ +I +G+ P+ L ET+ LK++ GP ++Q
Sbjct: 70 LITSTSKNKDIKQIRKKVGLVFQFPESQLFEETV-----------LKDVAFGPQNFGVSQ 118
Query: 362 AVEESLKSVNLFHGGVA----DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417
E+L L G++ +K + SGG RR+++A L PK++ +DEP+ GLDP
Sbjct: 119 EEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 418 ASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
R L + K+ Q G I+L TH M++ D + + G L G PK++
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 57/217 (26%), Positives = 108/217 (49%), Gaps = 30/217 (13%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDI- 315
E A+ ++L + E ++GP+G GK+T+I + + +TT Y + +I
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILY-RDQNIF 94
Query: 316 --RTDMDRIYTSMGVCPQE-----DLLWETLTGREHLLFYGR----LKNLKGPALTQAVE 364
++ + T++G+ Q+ +++ +T YG +K+ K L + VE
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPKSIYDNVT-------YGPKIHGIKDKK--TLDEIVE 145
Query: 365 ESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+SL+ ++ A SGG ++RL +A L P V+ MDEP++ LDP S
Sbjct: 146 KSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK 205
Query: 423 LWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
+ +V+ K+ +II+ TH+M++A + D+ F++G
Sbjct: 206 VEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242
|
Length = 271 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 2e-13
Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 35/237 (14%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG----------- 312
K ++ +S+ P+ ++GP G+GKTTF+ + + SG Y
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 313 ---LDIRTDMDRIYTSMGVCPQEDLLWETLTG-REHLLFYGRLKNLKGPALTQAVEESLK 368
L+ R + ++ P ++ L G R H L K +G A + E L
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMS-IMDNVLAGVRAHKLV--PRKEFRGVAQARLTEVGLW 150
Query: 369 SVNLFHGGVADKQAG---KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
V D+ + + SGG ++ L +A +L NP+V+ +DEP++ LDP + +
Sbjct: 151 D------AVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE 204
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKELK-ARY 474
++ +I+ TH++ +A + DR +F DG L Q +PK + ARY
Sbjct: 205 FIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARY 261
|
Length = 276 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 15/202 (7%)
Query: 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306
ISD R+I E+ +NG++ GE +LGP+G+GK+T ++ + G + +
Sbjct: 71 ISDETRQI-------QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF 123
Query: 307 TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAV 363
T + + R +I G Q+D+L+ LT RE L+F L K+L
Sbjct: 124 TGTILANN-RKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVA 182
Query: 364 EESLKSVNLFHGG---VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
E + + L + + SGG ++R+S+A ++ NP ++ +DEP++GLD +
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
Query: 421 NNL-WNVVKRAKQGRAIILTTH 441
L + A++G+ I+ + H
Sbjct: 243 YRLVLTLGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 25/231 (10%)
Query: 249 DNLRKIYPG---RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
L Y + + +N +SL+L SGE +LG +G GK+T +++G+ +
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 306 GTAYVQGLDI-----------RTDMDRIYT-SMG-VCPQEDLLWETLTGREHLLFYGRLK 352
G +G + R D+ ++ S+ V P++ + HLL
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL------ 120
Query: 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 412
+L E L++V+L V DK+ + SGG +R+ +A +L PK++ +DE
Sbjct: 121 SLDKAERLARASEMLRAVDL-DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179
Query: 413 TGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+ LD + + ++K+ +Q G A + TH + E C R+ + +G +
Sbjct: 180 SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 3e-13
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 30/227 (13%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326
+ +++ P + ++GP+G GK+T + + + SG A ++G + D + IY+
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG-ARLEG-AVLLDNENIYS-- 75
Query: 327 GVCPQEDLLWETLTGREHLLF---------------YG-RLKNLKGPA-LTQAVEESLKS 369
P D++ L R ++F +G R+ + L + VE+SL+
Sbjct: 76 ---PNLDVV--NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQ 130
Query: 370 VNLFHGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
L+ V D K SGG ++RL +A L P+V+ MDEP + LDP S + +
Sbjct: 131 AALWDE-VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL 189
Query: 427 VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
++ KQ I + TH+M++A D G + G L G E+ +R
Sbjct: 190 MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 5e-13
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 42/215 (19%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTDM- 319
K + G++L + GE ++GPNG+GK+T ++G T G +G DI TD+
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI-TDLP 70
Query: 320 --DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
+R + + Q + G +KN + L+ VN
Sbjct: 71 PEERARLGIFLAFQYP---PEIPG---------VKN----------ADFLRYVNE----- 103
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAI 436
+SGG K+R + L+ P + +DEP +GLD + + V+ + ++G+++
Sbjct: 104 ------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157
Query: 437 ILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 470
++ TH + + DR+ + DG + G KEL
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-13
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 52/244 (21%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
L K+Y G +S L GE G++G +G+GKTT + + G +GT
Sbjct: 11 GLSKLYGPGKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
Query: 310 V-----QGLDI------------RTDMD----------RIYTSMGVCPQEDLLWETLTGR 342
Q D+ RT+ R+ S G E L+ G
Sbjct: 65 YRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM---AIGA 121
Query: 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402
H YG ++ L + VE L + D +SGGM++RL +A +L+
Sbjct: 122 RH---YGNIRAEAQDWL-EEVEIDLDRI--------DDLPRTFSGGMQQRLQIARNLVTR 169
Query: 403 PKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460
P++V+MDEP+ GLD + + L ++++ + G A+++ TH + A L DRL + G
Sbjct: 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG- 228
Query: 461 LQCI 464
Q +
Sbjct: 229 -QVV 231
|
Length = 258 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 6e-13
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD--RIY 323
A++ +SL + GE ++G NGAGKTT + + G R TSG G DI TD +I
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDWQTAKIM 78
Query: 324 -TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ- 381
++ + P+ ++ +T E+L G A +E +K V + +++
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFF------AERDQFQERIKWVYELFPRLHERRI 132
Query: 382 --AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIIL 438
AG SGG ++ L++ +L+ P+++ +DEPS GL P +++ +++ ++ G I L
Sbjct: 133 QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192
Query: 439 TTHSMEEAEALCDR 452
+ +A L DR
Sbjct: 193 VEQNANQALKLADR 206
|
Length = 237 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 6e-13
Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 19/238 (7%)
Query: 246 IISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
II DN+ Y + P E A+N SL + ++G G+GK+T I + G+ +
Sbjct: 7 IILDNVSYTYAKK--TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 305 SGTAYV------QGLDIRTDMDRIYTSMGVC---PQEDLLWETLTGREHLLFYGRLK-NL 354
+G V L ++ R+ +G+ P+ L ET+ E + +G +
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETI---EKDIAFGPVNLGE 121
Query: 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414
+ V E LK V L + + SGG KRR+++A + + + +DEP+ G
Sbjct: 122 NKQEAYKKVPELLKLVQLPED-YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 415 LDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
LDP + N+ +R + + II+ TH+M++ + D + + +G + IG+P E+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
Length = 289 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 18/228 (7%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 320
E VA+N +S + + ++G +G+GK+T ++ G+ ++ GT V + I +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95
Query: 321 RIYTSMGVCPQEDLLWETLTGREHLLF----YGRLKN------LKGP-ALTQAVEESLKS 369
++ ++ L R ++F Y K+ + GP AL E+ K
Sbjct: 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL 155
Query: 370 VNLFHGGVA------DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+ + ++ SGG KRR+++A L P+++ DEP+ GLDP + +
Sbjct: 156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 424 WNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++ AK + + + TH+ME + D + + G + G P E+
Sbjct: 216 MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 7e-13
Identities = 57/218 (26%), Positives = 109/218 (50%), Gaps = 26/218 (11%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDIR--- 316
A+ G+S+ +P ++GP+G GK+TF+ + I R G+ + G DI
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI-DGSVELDGQDIYQDG 118
Query: 317 TDMDRIYTSMGVCPQE-----DLLWETLT--GREH-LLFYGRLKNLKGPALTQA----VE 364
++ + +G+ Q + E ++ R+H + G L L G A VE
Sbjct: 119 VNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 365 ESLKSVNLF---HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
SL+ L+ + + D G SGG ++RL +A L +P+V+ MDEP++ LDP + +
Sbjct: 179 RSLRQAALWDEVNDRLDDNALG-LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
Query: 422 NLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
+ ++++ + +++ TH+M++A + D+ +F+ G
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275
|
Length = 305 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 33/228 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-----RT 317
E+ A+ +++++PSG ++G G+GK+T + + G+ + TSGT + I
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 318 DMDRIYTSMGVC---PQEDLLWETLTGREHLLFYGRLKNLK-GP---------ALTQAVE 364
+ + +G+ P+ L ET+ K++ GP A +A
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETV-----------EKDICFGPMNFGVSEEDAKQKA-R 126
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E ++ V L + + + SGG RR+++A L P+V+ +DEP+ GLDP R +
Sbjct: 127 EMIELVGLPEE-LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM 185
Query: 425 NVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ + ++G +L THSME+A D++ + G++ G P+E+
Sbjct: 186 EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-13
Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
++ ++ +SL L G+ +LGPNGAGK+T + +++G+ G R RI
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI------KRNGKLRI 69
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
G PQ+ L TL L R L+ + + +LK V H + D
Sbjct: 70 ----GYVPQKLYLDTTLP-----LTVNRFLRLRPGTKKEDILPALKRVQAGH--LIDAPM 118
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTT 440
K SGG +R+ +A +L+ P+++ +DEP+ G+D + L++++ R + A+++ +
Sbjct: 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPK 468
H + A D + + ++ + C G P+
Sbjct: 179 HDLHLVMAKTDEV-LCLNHHICCSGTPE 205
|
Length = 251 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 9e-13
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 28/231 (12%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDI------ 315
++G++L +P ++GP+G+GK+T + + + SG Y+ G DI
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 316 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
R + ++ P + G L RL K L + V +L+ L+
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALG----LKLNRLVKSKK-ELQERVRWALEKAQLW 133
Query: 374 H--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
D AGK SGG ++RL +A +L P+V+ DEP+ LDP + + ++ K
Sbjct: 134 DEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK 193
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG-------NPK-ELKARY 474
+ I+L TH ++A + D + G + G NP+ EL +Y
Sbjct: 194 KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEKY 244
|
Length = 250 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 1e-12
Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 51/209 (24%)
Query: 257 GRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316
+ ++L +P GE ++GP G+GK++ +S ++G SG+ V G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---- 66
Query: 317 TDMDRIYTSMGVCPQED-LLWETLTGREHLLF--------YGR----------LKNLKGP 357
S+ QE + T+ RE++LF Y + L+ L
Sbjct: 67 --------SIAYVSQEPWIQNGTI--RENILFGKPFDEERYEKVIKACALEPDLEILPDG 116
Query: 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417
LT+ E K +NL SGG K+R+S+A ++ + + +D+P + +D
Sbjct: 117 DLTEIGE---KGINL-------------SGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
Query: 418 ASRNNLWN--VVKRAKQGRAIILTTHSME 444
+++ ++ + IL TH ++
Sbjct: 161 HVGRHIFENCILGLLLNNKTRILVTHQLQ 189
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326
++GL+ ++ +GE ++GP+G+GK+T + +++ + G V+G + M +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG-EQLYHMPGRNGPL 74
Query: 327 GVCPQEDLLWETLTGREHLLFYG--------RLKNL-------KGPALTQAVEESLKSVN 371
P ++ + + ++F L N+ G A +A + +++ ++
Sbjct: 75 --VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLD 132
Query: 372 LFHGGVADKQ---AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ G+ADK + SGG ++R+++A +L PKV+ DE ++ LDP + NV++
Sbjct: 133 MV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 429 R--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-------QCIGNPKELKAR 473
R ++ ++L TH M A DR+ F G + + PKE + R
Sbjct: 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERTR 244
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 26/222 (11%)
Query: 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
I+ +++ + R+G+ A+ S +P G ++G NG+GK+T ++G
Sbjct: 3 QQAGIVVNDVTVTW--RNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV 57
Query: 302 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-EDLLWE--------TLTGREHLLFYGRLK 352
R SG + G R + + + PQ E++ W + GR YG +
Sbjct: 58 RLASGKISILGQPTRQALQK--NLVAYVPQSEEVDWSFPVLVEDVVMMGR-----YGHMG 110
Query: 353 NLKGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE 410
L+ Q V +L V++ +Q G+ SGG K+R+ +A ++ +V+ +DE
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVE--FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE 168
Query: 411 PSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 451
P TG+D + + ++++ + +G+ ++++TH++ CD
Sbjct: 169 PFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210
|
Length = 272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-12
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 27/228 (11%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLD--------IR 316
A++ + L + GE +LGP+G+GK+T + + G IT S ++++ L +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLL--------FYGRLKNLKGPALTQAVEESLK 368
D+ + + G Q+ L L+ E++L F+ + Q ++L
Sbjct: 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
V + H A ++ SGG ++R+++A +L+ KV+ DEP LDP S + + ++
Sbjct: 139 RVGMVH--FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 429 RAKQ--GRAIILTTHSMEEAEALCDRL------GIFVDGSLQCIGNPK 468
Q G +++T H ++ A C+R+ +F DGS Q N +
Sbjct: 197 DINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNER 244
|
Length = 262 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--LDIRTDMDRIYT 324
V +S + +GE G+ G GAG+T + G +SG + G + IR+ D I
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 325 SMGVCPQED-------LLWE-----TLTGREHLLFYGRLKNLKGPALTQAVEESL--KSV 370
+ P ED L TL G + K AL + L K+
Sbjct: 335 GIAYVP-EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP 393
Query: 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR- 429
+ ++ G SGG ++++ +A L +PKV+ +DEP+ G+D ++ ++ +++
Sbjct: 394 SP------EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447
Query: 430 AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
A +G+AI++ + + E L DR+ + +G
Sbjct: 448 AAEGKAILMISSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 51/216 (23%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--------LDIRTD 318
+NG+S ++ GE ++G NG+GK+T ++ G+ G + G ++R
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 378
+ ++ + P + T+ + + F + + + + V+E+L +VN+
Sbjct: 83 IGMVFQN----PDNQFVGATV--EDDVAFGMENQGIPREEMIKRVDEALLAVNMLD--FK 134
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR--AI 436
++ + SGG K+R++VA + P+++ +DE ++ LDP R + V+ K+ +
Sbjct: 135 TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ TH ++EA A DR+ + G + P EL A
Sbjct: 195 LSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 48/268 (17%)
Query: 229 ERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGA 288
ER++V G H + + IY G +KV + LS + + ++GP+G
Sbjct: 28 ERKKVS----GGGKPHVVAKN--FSIYYGEFEAVKKVNADILSKYVTA-----IIGPSGC 76
Query: 289 GKTTFISMMIGITRT--------TSGTAYVQGLDIR---TDMDRIYTSMGVCPQE----- 332
GK+TF+ I R T+G G DI TD + +G+ Q+
Sbjct: 77 GKSTFLR---AINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP 133
Query: 333 DLLWETLTGREHLLFYG-RLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGG 388
+++ + YG RL + L + VE+SL+ L+ DK A SGG
Sbjct: 134 KSIFDNIA-------YGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG 186
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 448
++RL VA +L P+++ +DEP++ LDP + + ++++ + I++ TH+M++A
Sbjct: 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASR 246
Query: 449 LCDRLGIFVDGSL-------QCIGNPKE 469
+ D F +G L Q NPK+
Sbjct: 247 VSDYTMFFYEGVLVEHAPTAQLFTNPKD 274
|
Length = 286 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 53/207 (25%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-V 328
+SL + +GE G+ G GAG+T + G+ G + G +I + G V
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 329 CPQED-----------LLWETLTGREHLLFYGRLKNLKGPALTQAV-EESLKSVNL-FHG 375
ED L W L + R PA AV E +++N+ F+
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCA-----LTHNRRGFWIKPARENAVLERYRRALNIKFNH 396
Query: 376 GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGR 434
A++ A SGG ++++ +A L +P+++ +DEP+ G+D ++RN+++ +++ A Q
Sbjct: 397 --AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSL 461
A++ + +EE E + DR+ + G +
Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 53/227 (23%), Positives = 108/227 (47%), Gaps = 16/227 (7%)
Query: 258 RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317
R V ++ +SL + GE G++G +G+GK+T ++ +G V G D+
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL 68
Query: 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--------ESLK 368
D + +GV QE++L+ + R+++ L + G ++ + +E + +
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNR-SIRDNI----ALAD-PGMSMERVIEAAKLAGAHDFIS 122
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ + + +Q SGG ++R+++A +LI NP+++ DE ++ LD S + + +
Sbjct: 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMH 182
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
GR +I+ H + + DR+ + G + G+ EL A G
Sbjct: 183 DICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 59/230 (25%), Positives = 113/230 (49%), Gaps = 25/230 (10%)
Query: 249 DNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
++LR +P + G AV+G+SL L G+ G++G +G+GK+T ++ + +
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS 339
Query: 304 TSGTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGR--------EHLLFYGRL 351
G G DI R +M + M V Q+ + +L+ R E L +
Sbjct: 340 -QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHE-- 394
Query: 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
L Q V E+L+ V L ++ ++SGG ++R+++A +LI P+++ +DEP
Sbjct: 395 PKLSAAERDQRVIEALEEVGL-DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453
Query: 412 STGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
++ LD + + + ++++ K G + + +H + ALC R+ + DG
Sbjct: 454 TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503
|
Length = 534 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (162), Expect = 4e-12
Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 28/222 (12%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-----RTDMD 320
A+ + L + G ++G G+GK+T + + G+ + T G V + + + ++
Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80
Query: 321 RIYTSMGVC---PQEDLLWETLTGREHLLFYGRLKNLK-GP---ALTQAVEESLKSVNLF 373
+ +GV P+ L ET+ LK++ GP + + E + + L
Sbjct: 81 PVRKKVGVVFQFPESQLFEETV-----------LKDVAFGPQNFGIPKEKAEKIAAEKLE 129
Query: 374 HGGVA----DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
G+A +K + SGG RR+++A L P+V+ +DEP+ GLDP +R + + +
Sbjct: 130 MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189
Query: 430 AKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
Q G+ ++L TH M++ D + + G + G P ++
Sbjct: 190 IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
L K+Y R G +S L GE G++G +G+GKTT ++ + +G
Sbjct: 10 RGLTKLYGPRKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
Query: 309 YVQGLD-----------------IRTD--------MD--RIYTSMGVCPQEDLLWETLTG 341
+ + D +RT+ D R+ S G E L+ G
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLM---AVG 120
Query: 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401
H YG ++ G L + VE + D +SGGM++RL +A +L+
Sbjct: 121 ARH---YGDIRATAGDWL-ERVEIDAARI--------DDLPTTFSGGMQQRLQIARNLVT 168
Query: 402 NPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
+P++V+MDEP+ GLD + + L ++++ + G A+++ TH + A L RL + G
Sbjct: 169 HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI----TRTTSGTAYVQGLDIRTDMDR 321
V L+L+L GE ++G +G+GK+ ++G+ TSG + G + R
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 322 -IYTSMGVCPQEDLLWETLTGREH----LLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
+ + + T H L G+L + +A+E V L
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA----VGLPDPE 116
Query: 377 -VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQG 433
V K + SGGM +R+ +A++L+ P + DEP+T LD ++ + +++ R G
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
I+L TH + + D + + DG + G KE+
Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 48/233 (20%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGK--TTFISM-MIGITRTTSG 306
+LR + DG+ AVN L+ +L +GE G++G +G+GK T F M ++ G
Sbjct: 17 DLRVTFSTPDGD--VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74
Query: 307 TAYVQGLDI----RTDMDRI------------YTS----MGVCPQEDLLWETLTGREHLL 346
+A G +I +++++ TS M V Q L E L H
Sbjct: 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQ---LMEVL--MLH-- 127
Query: 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGN 402
KG + +A EES++ ++ A K+ Y SGGM++R+ +A++L+
Sbjct: 128 --------KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCR 179
Query: 403 PKVVYMDEPSTGLD---PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452
PK++ DEP+T LD A L N +KR + AII+ TH + +CD+
Sbjct: 180 PKLLIADEPTTALDVTVQAQIMTLLNELKR-EFNTAIIMITHDLGVVAGICDK 231
|
Length = 330 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-12
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQED 333
G ++G +GAGKTT ++++ T T G V G + + R S+G Q+D
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR---SIGYVQQQD 845
Query: 334 LLWETLTGREHLLFYGRLKNLKGPALTQA---VEESLKSVNLFHGGVADKQAGKYSGGM- 389
L T T RE L F L+ K + ++ VEE +K + + AD G G+
Sbjct: 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM--ESYADAVVGVPGEGLN 903
Query: 390 ---KRRLSVAISLIGNPK-VVYMDEPSTGLDPASRNNLWNVV----KRAKQGRAIILTTH 441
++RL++ + L+ PK ++++DEP++GLD + W++ K A G+AI+ T H
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA---WSICKLMRKLADHGQAILCTIH 960
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 39/242 (16%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
YPG DG P + +SL +P+GE ++GP+G+GK+T +++ I R SG +
Sbjct: 10 YPG-DGPP---VLRDISLDIPAGETVALVGPSGSGKSTLVNL---IPRFYDVDSGRILID 62
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKS 369
G D+R + + +G+ Q+ L+ T E++ YGR P T+ VEE+ ++
Sbjct: 63 GHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIA-YGR------PGATREEVEEAARA 114
Query: 370 VNL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
N + + ++ K SGG ++R+++A +L+ +P ++ +DE ++ LD S
Sbjct: 115 ANAHEFIMELPEGYDTVIGER-GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173
Query: 420 RNNLWNVVKRAKQGRAIILTTH---SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476
+ ++R + R + H ++E A DR+ + DG + G +EL A+ GG
Sbjct: 174 ERLVQAALERLMKNRTTFVIAHRLSTIENA----DRIVVLEDGKIVERGTHEELLAQ-GG 228
Query: 477 SY 478
Y
Sbjct: 229 VY 230
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 9e-12
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 328
G+ L +GE +LG NGAGK+T + ++ GI SGT + G +G+
Sbjct: 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88
Query: 329 --CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK----SVNLFHGGVADKQA 382
PQE LL+ L+ +E++LF L K A Q +++ L ++L D A
Sbjct: 89 YLVPQEPLLFPNLSVKENILF--GLP--KRQASMQKMKQLLAALGCQLDL------DSSA 138
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTH 441
G ++ + + L+ + +++ +DEP+ L PA L++ ++ QG I+ +H
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198
Query: 442 SMEEAEALCDRLGIFVDG 459
+ E L DR+ + DG
Sbjct: 199 KLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 47/219 (21%), Positives = 105/219 (47%), Gaps = 15/219 (6%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RTDMDRIYT 324
V +S ++ GE G G G+G+T ++ + G+ + G + G DI R+ +D +
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 325 SMGVCPQ---EDLLWETLTGREHLLFYGRLKN--LKG------PALTQAVEESLKSVNLF 373
M + ++ + + +++ LK+ KG Q E+ + +
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQ 432
++ + SGG ++++ ++ L P+V+ DEP+ G+D ++ ++ V+++ A
Sbjct: 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSL-QCIGNPKEL 470
G+ I++ + + E +CDR+ +F +G L Q + N ++
Sbjct: 459 GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDM 497
|
Length = 510 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP R P+ + + +S L GE ++GP+G+GK+T ++++ + G + G
Sbjct: 21 YPTR---PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77
Query: 315 IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS----- 369
I + + Y V +L G+E +LF L++ L E +K
Sbjct: 78 I-SQYEHKYLHSKV---------SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 370 -----VNLFHGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
++ G ++ + SGG K+R+++A +LI NP+V+ +DE ++ LD S
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 422 NLWNVVKRAKQGRAIILTTHSMEEAE 447
+ + + R +++ H + E
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVE 213
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 33/231 (14%)
Query: 260 GNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 318
G P EK ++ +S L G ++G G+GK+T + + + +SGT + G I +
Sbjct: 15 GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPE 74
Query: 319 -----MDRIYTSMGVC---PQEDLLWETLTGREHLLFYGRLKNLK-GP---------ALT 360
+ ++ + + P+ L T+ LK+++ GP A
Sbjct: 75 TGNKNLKKLRKKVSLVFQFPEAQLFENTV-----------LKDVEFGPKNFGFSEDEAKE 123
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+A++ LK V L + K + SGG RR+++A + P+++ +DEP+ GLDP R
Sbjct: 124 KALK-WLKKVGL-SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
Query: 421 NNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ + K K G +IL TH+M++ D + + G L +PKE+
Sbjct: 182 KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
|
Length = 287 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---------LDI 315
+A+ + L +P+ + +GP+G GK+T + + G A V+G D
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-AKVEGRLLYRDRNIYDS 92
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375
+ + ++ +G+ Q + + E++ F R KG L + VE+SL+ ++
Sbjct: 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEE 150
Query: 376 GVADKQAGK---YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
V DK K SGG ++RL +A ++ P V+ MDEP + LDP S + + K+
Sbjct: 151 -VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 433 GRAIILTTHSMEEAEALCDRLGIF 456
II+ TH+M++A + D F
Sbjct: 210 QYTIIMVTHNMQQASRVADWTAFF 233
|
Length = 274 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 11/205 (5%)
Query: 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVC 329
L + GE +LGP+GAGK+T ++++ G SG+ + G D T R SM
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF- 77
Query: 330 PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV--NLFHGGVADKQAGKYSG 387
QE+ L+ LT +++ G LK L A E L ++ + + + G+ SG
Sbjct: 78 -QENNLFSHLTVAQNIGL-GLNPGLK---LNAAQREKLHAIARQMGIEDLLARLPGQLSG 132
Query: 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL--TTHSMEE 445
G ++R+++A L+ ++ +DEP + LDPA R + +V + Q R + L +HS+E+
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192
Query: 446 AEALCDRLGIFVDGSLQCIGNPKEL 470
A + R + DG + G EL
Sbjct: 193 AARIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 2e-11
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 20/230 (8%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ YP DG P A+ ++L + GE G++G NG+GK+T + G+ R G
Sbjct: 5 ENVSYSYP--DGTP---ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 309 YVQGLDI--RTDMDRIYTSMGVCPQEDLLWET-LTGR--EHLLFYGRLKNLKGPA--LTQ 361
V G+D + + I +G+ Q ET GR E L +G +NL P + +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNP---ETQFVGRTVEEDLAFGP-ENLCLPPIEIRK 115
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS-R 420
V+ +L + L + SGG + +++A L P+ + DE ++ LDP S
Sbjct: 116 RVDRALAEIGL--EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 421 NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
L + K ++G+ I+ TH++EE DR+ + G + G P+ +
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 19/219 (8%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTDM 319
+ ++ +SL L GE +LGPNGAGK+T + + G SG + G + ++
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFHGGVA 378
R V PQ L T E + GR + A V +L V+L H +A
Sbjct: 75 AR---RRAVLPQHSSLSFPFTVEEVVAM-GRAPHGLSRAEDDALVAAALAQVDLAH--LA 128
Query: 379 DKQAGKYSGGMKRRLSVAISLI------GNPKVVYMDEPSTGLDPASRNNLWNVVKR--A 430
+ + SGG ++R+ +A L G P+ + +DEP++ LD A ++++ + ++
Sbjct: 129 GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH 188
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
++G A+I+ H + A DR+ + G L G P E
Sbjct: 189 ERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
Length = 258 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 22/224 (9%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMD---R 321
+ G++L + GE ++GPNG+GK+T ++G T G G DI ++ R
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI-LELSPDER 78
Query: 322 IYTSMGVCPQEDLLWETLTGREHL-LFYGRLKNLKG--PALTQAVEESLKSVNL----FH 374
+ + Q + +T + L + +G P + ++E + + L
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQG 433
V + +SGG K+R + L+ PK+ +DEP +GLD + + + ++G
Sbjct: 139 RYVNEG----FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194
Query: 434 RAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNP---KELKAR 473
R +++ TH + + D++ + DG + G+P +EL+ +
Sbjct: 195 RGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEK 238
|
Length = 251 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 16/204 (7%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISM------MIGITRTTSGTAYVQGLDI--- 315
+AV + L +P + +GP+G GK+T + +I R G G ++
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV-EGKVTFHGKNLYAP 82
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375
D + +G+ Q+ + + +++ + R+ KG + + VE SL+ L+
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGD-MDELVERSLRQAALWDE 140
Query: 376 GVADK--QAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
V DK Q+G SGG ++RL +A ++ P+V+ MDEP + LDP S + ++ K+
Sbjct: 141 -VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199
Query: 433 GRAIILTTHSMEEAEALCDRLGIF 456
II+ TH+M++A + D F
Sbjct: 200 QYTIIIVTHNMQQAARVSDMTAFF 223
|
Length = 264 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 46/307 (14%)
Query: 191 LYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKP----DVTQER-ERVEQLLLEPGTSHA 245
L NF S R+ MEK DV E + + L P A
Sbjct: 212 LSIPLNFLGFSYREIRQ---------ALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGA 262
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ N+ Y +P + +NG+S +P G+ ++G +GAGK+T + ++ S
Sbjct: 263 VAFINVSFAY-----DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 306 GTAYVQGLDIR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
G+ + G DIR + ++G+ PQ+ +L+ + + YGR P T E
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF--NDTIAYNIKYGR------PDATA--E 367
Query: 365 ESLKSVNLFHGGVA--------DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPS 412
E + D G K SGG K+R+++A +++ NP ++ +DE +
Sbjct: 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEAT 427
Query: 413 TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE-AEALCDRLGIFVDGSLQCIGNPKELK 471
+ LD + + ++ GR ++ H + +A D + + +G + G +EL
Sbjct: 428 SALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDA--DEIIVLDNGRIVERGTHEELL 485
Query: 472 ARYGGSY 478
A GG Y
Sbjct: 486 AA-GGLY 491
|
Length = 497 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 50/238 (21%)
Query: 238 LEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
L GT + + + K Y R +N L L +P+G+ ++G +G GK+T + ++
Sbjct: 7 LNQGTPLLL--NAVSKRYGERT------VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLL 58
Query: 298 IGITRTTSG-----TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352
G+ ++G TA + + R D ++ + P W+ + L
Sbjct: 59 AGLETPSAGELLAGTAPLA--EAREDTRLMFQDARLLP-----WKKVIDNVGL------- 104
Query: 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYM 408
LKG A ++L +V G+AD+ A ++ SGG K+R+++A +LI P ++ +
Sbjct: 105 GLKGQWRDAA-LQALAAV-----GLADR-ANEWPAALSGGQKQRVALARALIHRPGLLLL 157
Query: 409 DEPSTGLDPASR-------NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
DEP LD +R +LW + G ++L TH + EA A+ DR+ + +G
Sbjct: 158 DEPLGALDALTRIEMQDLIESLWQ-----QHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS--- 325
+SL +P G+ ++GP+G GKTT + ++ G G G +I R+YT
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 326 MGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
M + Q L+ + +++ + R L P L V L++V L G A +
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL--RGAAKLMPSE 143
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHS 442
SGGM RR ++A ++ P ++ DEP G DP + L ++ G ++ +H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 443 MEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ E ++ D I D + G+ + L+A
Sbjct: 204 VPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
Length = 269 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGV 328
L+L + GE G++GP+G+GK+T ++ + G V G+D+ D + MGV
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
Query: 329 CPQEDLLWETLTGREHLLFYGRLKNLKGP------ALTQAVEESLKSVNLFHG--GVADK 380
QE++L+ + R+++ L N P A A S L G +
Sbjct: 536 VLQENVLFSR-SIRDNI----ALCNPGAPFEHVIHAAKLAGAHDFIS-ELPQGYNTEVGE 589
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTT 440
+ SGG ++R+++A +L+GNP+++ DE ++ LD S + ++ +GR +I+
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
H + A CDR+ + G + G +EL A G Y
Sbjct: 650 HRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL-QGLY 685
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 13/205 (6%)
Query: 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDRIYTSMG 327
L + GE +GP+G GK+T + M+ G+ TSG ++ + R + +R +G
Sbjct: 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG--EKRMNDVPPAER---GVG 78
Query: 328 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387
+ Q L+ L+ E++ F +L K + Q V + + + L H + D++ SG
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH--LLDRKPKALSG 136
Query: 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEE 445
G ++R+++ +L+ P V +DEP + LD A R + + R + GR +I TH E
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 446 AEALCDRLGIFVDGSLQCIGNPKEL 470
A L D++ + G + +G P EL
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 46/249 (18%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
+ ++ YP + +K A+N +S ++P G ++G NG+GK+T IS +I
Sbjct: 5 IVEFKHVSFTYP----DSKKPALNDISFSIPRGSWTALIGHNGSGKST-ISKLI------ 53
Query: 305 SGTAYVQGLDIRTDMDR-IYTSMGVCPQEDLLWETLTGREHL---------LFYGR---- 350
GL + D T G+ +W+ RE + F G
Sbjct: 54 ------NGLLLPDDNPNSKITVDGITLTAKTVWDI---REKVGIVFQNPDNQFVGATVGD 104
Query: 351 -----LKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403
L+N + P + + V + L V + D + SGG K+R+++A L P
Sbjct: 105 DVAFGLENRAVPRPEMIKIVRDVLADVGMLD--YIDSEPANLSGGQKQRVAIAGILAVEP 162
Query: 404 KVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
K++ +DE ++ LDPA + + +++ + K +I TH ++EA + D++ + DG L
Sbjct: 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL 221
Query: 462 QCIGNPKEL 470
G+P E+
Sbjct: 222 LAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 9e-11
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 24/231 (10%)
Query: 256 PGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315
R G AV +S + +GE G+ G G G++ + + G+ + SG + G D+
Sbjct: 266 KDRRGVT---AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322
Query: 316 RTDMD---RIYTSMGVCPQEDL---------LWE-TLTGREHLLFYGRLKNLKGPALTQA 362
+ R + P++ L E + GR + R L A+ +
Sbjct: 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF 382
Query: 363 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS--- 419
E ++ ++ D A SGG +++L +A L P ++ +P+ GLD +
Sbjct: 383 ARELIEEFDVRAPS-PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF 441
Query: 420 -RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
L ++ G+A++L + ++E L DR+ + +G + I P+E
Sbjct: 442 IHERL---LELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 262 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321
P + ++ LSL P+G+ G++G NG+GK+T + M+ + G + + + +
Sbjct: 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81
Query: 322 IYT-SMGVCPQEDLLWETLTGREHLLFYGR------LKNLKGPALTQAVEESLKSVNLFH 374
+ + PQ+ E +T RE L+ GR L G A + VEE++ V L
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRE-LVAIGRYPWHGALGRF-GAADREKVEEAISLVGL-- 137
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
+A + SGG ++R +A+ + + + + +DEP++ LD A + ++ +V R Q R
Sbjct: 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197
Query: 435 A--IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+I H + A CD L G + G P EL
Sbjct: 198 GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQG--LDIRT 317
NP + V+ +S +L GE G+ G GAG+T + + G G ++ G +DIR
Sbjct: 270 NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN 329
Query: 318 DMDRIYTSMGVCPQEDLLWE------------TLTGREHLLFYGRLKNLKGPALTQAVEE 365
I + + P ED TL+ + F R+ A Q +
Sbjct: 330 PAQAIRAGIAMVP-EDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA---AAELQIIGS 385
Query: 366 SLK--SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+++ V G+ SGG +++ +A L+ NP+V+ +DEP+ G+D ++ +
Sbjct: 386 AIQRLKVKTAS---PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442
Query: 424 WNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
+ ++ + A++G AII+ + + E L DR+ + +G L+
Sbjct: 443 YKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 17/210 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 323
A++G +L + G ++G NGAGK+T + ++ GI +G+ G ++ +
Sbjct: 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE 78
Query: 324 TSMGVCPQEDLLWETLT-------GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
+G+ QE L LT GRE F R + + ++ L +NL
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGRE---FVNRFGRIDWKKMYAEADKLLARLNLRFS- 134
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRA 435
+DK G+ S G ++ + +A L KV+ MDEP+ L +L+ V++ K QGR
Sbjct: 135 -SDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG 193
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIG 465
I+ +H ++E +CD + +F DG Q I
Sbjct: 194 IVYISHRLKEIFEICDDVTVFRDG--QFIA 221
|
Length = 501 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
DNL K Y ++G+ + ++ +S ++ GE ++G +G+GK+T + ++ G+ TSG
Sbjct: 9 DNLCKRY--QEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66
Query: 309 YVQG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
G L + +G Q L T E++ + K +
Sbjct: 67 IFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRA 126
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
E L +V L H A+ + + SGG ++R+++A +L+ NP++V DEP+ LD + +++
Sbjct: 127 LEMLAAVGLEHR--ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
Query: 424 WNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
+ ++ QG A ++ TH ++ A+ + +L + DG L
Sbjct: 185 FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLT 224
|
Length = 233 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326
+ +SL++ +GEC + GP+G+GK+T + + G V+ D+ +
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL------V 80
Query: 327 GVCPQEDLLWETLTGREHLLFY-----------GRLKNLKGPALTQAVE---------ES 366
P E L R + Y L + P L + V +
Sbjct: 81 TAEP-----REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADL 135
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
L +NL + +SGG ++R+++A I + ++ +DEP+ LD +R + +
Sbjct: 136 LTRLNLPER-LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 427 VKRAK-QGRAIILTTHSMEEAEALCDRL 453
++ AK +G A++ H E EA+ DRL
Sbjct: 195 IREAKARGAALVGIFHDEEVREAVADRL 222
|
Length = 235 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 25/216 (11%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDM- 319
+K + G++L + GE ++GPNG+GK+T + G TSGT +G D+ ++
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL-LELE 70
Query: 320 --DR----IYTSM-------GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
+R ++ + GV + L L R L L L +A
Sbjct: 71 PDERARAGLFLAFQYPEEIPGV-SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 367 LK-SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L + V + +SGG K+R + + PK+ +DE +GLD + +
Sbjct: 130 LGMDEEFLNRSVNE----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 426 VVKRAK-QGRAIILTTHSMEEAEALC-DRLGIFVDG 459
+ R + R+ ++ TH + D + + +DG
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 42/186 (22%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321
+ +S ++ GE G++G G+GK++ + + + +SG+ + G+DI +
Sbjct: 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75
Query: 322 IYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALTQAVEE-SLKS-VNLFHGGVA 378
+ + + + PQ+ +L+ T+ R +L +G + L QA+E LK V GG+
Sbjct: 76 LRSRISIIPQDPVLFSGTI--RSNLDPFGEYSDE---ELWQALERVGLKEFVESLPGGLD 130
Query: 379 DKQA--GK-YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 435
G+ S G ++ L +A +L+ K++ +DE + +DP + + ++ A +
Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCT 190
Query: 436 IILTTH 441
++ H
Sbjct: 191 VLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR-IYTS--- 325
+ LP+ + GP+G+GKT+ I+M+ G+TR G + G + D ++ I+
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG-RVLVDAEKGIFLPPEK 75
Query: 326 --MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+G Q+ L+ T R +L YG Q V + + H + D+ G
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLR-YGM-WKSMRAQFDQLVA----LLGIEH--LLDRYPG 127
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGR-AIILTTH 441
SGG K+R+++ +L+ P+++ MDEP LD + + ++R + I+ +H
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Query: 442 SMEEAEALCDRLGIFVDG 459
S++E L DR+ + +G
Sbjct: 188 SLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 25/195 (12%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+ +N +S +L +GE + GP+G GK+T + ++ + TSGT +G DI T I
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 323 Y-TSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD- 379
Y + C Q L+ +T+ ++L+F +++N Q + ++ +L + D
Sbjct: 79 YRQQVSYCAQTPTLFGDTV--YDNLIFPWQIRN-------QQPDPAIFLDDLERFALPDT 129
Query: 380 ---KQAGKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKR--A 430
K + SGG K+R ISLI N PKV+ +DE ++ LD ++++N+ ++ R
Sbjct: 130 ILTKNIAELSGGEKQR----ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVR 185
Query: 431 KQGRAIILTTHSMEE 445
+Q A++ TH +E
Sbjct: 186 EQNIAVLWVTHDKDE 200
|
Length = 225 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 39/256 (15%)
Query: 250 NLRKIYPGRDGNPEKVAV-NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
++R+ YP + E+V V G+SL + +GE ++G +G+GK+T ++++ + + TSGT
Sbjct: 9 DIRRSYPSGE---EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY 65
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF----YGRL------KNLKGPA 358
V G D+ +D D L REH F Y L +N++ PA
Sbjct: 66 RVAGQDV-ATLDA-----------DAL--AQLRREHFGFIFQRYHLLSHLTAAQNVEVPA 111
Query: 359 LTQAVE--ESLKSVN--LFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
+ +E + L L G+ D+ Q + SGG ++R+S+A +L+ +V+ DEP
Sbjct: 112 VYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171
Query: 412 STGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ LD S + ++ + + +G +I+ TH + A A +R+ DG + + NP
Sbjct: 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGEI--VRNPPAQ 228
Query: 471 KARYGGSYVFTMTTSA 486
+ + +A
Sbjct: 229 EKVNVAGGTEPVVNTA 244
|
Length = 648 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 41/202 (20%)
Query: 228 QERERVEQLLLEPGT---SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 284
Q+R ++ + PG I ++NL K + + + ++ LS LP G G++G
Sbjct: 302 QKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK------LLIDDLSFKLPPGGIVGVIG 355
Query: 285 PNGAGKTTFISMMIGITRTTSGT---------AYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
PNGAGK+T M+ G + SGT AYV R +D T +
Sbjct: 356 PNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVD--QSRDALDPNKT----------V 403
Query: 336 WETLT-GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394
WE ++ G + + +L + P+ + N F G K+ G+ SGG + R+
Sbjct: 404 WEEISGGLDII----QLGKREVPS-----RAYVGRFN-FKGSDQQKKVGQLSGGERNRVH 453
Query: 395 VAISLIGNPKVVYMDEPSTGLD 416
+A +L V+ +DEP+ LD
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 6e-10
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 23/230 (10%)
Query: 240 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299
+ ++ L KI+ G +AV + + E G +GP+G GK+T + +
Sbjct: 2 VSEAPIVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR 56
Query: 300 ITRTTSGTAY----------VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349
+ G + V G + + R Y M V Q + +++ +++ F
Sbjct: 57 MNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM-VFQQPNPF--SMSIFDNVAFGL 113
Query: 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVV 406
RL KG V+ +L+ L+ V DK SGG ++RL +A ++ P+V+
Sbjct: 114 RLNRYKGDL-GDRVKHALQGAALWDE-VKDKLKVSGLSLSGGQQQRLCIARAIATEPEVL 171
Query: 407 YMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456
+DEP + LDP + + ++ K+ I L TH+M++A + D F
Sbjct: 172 LLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFF 221
|
Length = 261 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-10
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 258 RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317
G + + S + GE +LG G+G +T + + T G V+G DI
Sbjct: 14 GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTL---LKALANRTEGNVSVEG-DIHY 69
Query: 318 D------MDRIYTSMGV-CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
+ Y + +ED+ + TLT RE L F R K
Sbjct: 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG----------------- 112
Query: 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
N F G+ SGG ++R+S+A +L+ V+ D + GLD ++
Sbjct: 113 NEFVRGI--------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 6e-10
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
++ + +S LP+G + G NGAGKTT + ++ G+ G + I+ D+
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+ + LT RE+ L+ ++ + E + +L H + D
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEH--LIDYPC 125
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RAKQGRAIILTTH 441
G S G KR++++ + K+ +DEP LD S + ++ +G A++LT+H
Sbjct: 126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
Length = 200 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-10
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 24/196 (12%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI-YTSMGVCPQEDLL 335
E G+LGPNG GKTTFI M+ G+ + G DI ++D + Y PQ +
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEG-------DIEIELDTVSYK-----PQY--I 70
Query: 336 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395
G L K+ E K + + + D++ + SGG +R+++
Sbjct: 71 KADYEGTVRDLLSSITKDFYTHP--YFKTEIAKPLQI--EQILDREVPELSGGELQRVAI 126
Query: 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRL 453
A L + + +DEPS LD R V++R + + H + + L DRL
Sbjct: 127 AACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186
Query: 454 GIFVDG--SLQCIGNP 467
+F +G S+ + NP
Sbjct: 187 IVF-EGEPSVNGVANP 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-10
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 15/210 (7%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A++ +SL G+ G++G NG+GK+T +++ G T G G ++ I S
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAIS 93
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
G+ Q LTG E++ F K + + ++ L G + KY
Sbjct: 94 AGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL--GEFIYQPVKKY 144
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEP-STGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444
S GM+ +L +I++ NP ++ +DE S G ++ L + + +Q + I +H++
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG 204
Query: 445 EAEALCDRLGIFVDGSLQCIGNPKELKARY 474
+ C ++ G L+ G ++ +Y
Sbjct: 205 QVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
Length = 264 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 9e-10
Identities = 50/200 (25%), Positives = 100/200 (50%), Gaps = 16/200 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A+ +++ + + ++GP+G GK+TF+ + G Y + + D I S
Sbjct: 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL-S 89
Query: 326 MGVCPQEDLLWETLTGREHLLF---------YG-RLKNLKGPA-LTQAVEESLKSVNLFH 374
V P E + ++ ++ F YG R++ +K + L + VE +L++ L+
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW- 148
Query: 375 GGVADKQ---AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK 431
V D+ A SGG ++RL +A +L +P+++ DEP++ LDP + ++ ++ K
Sbjct: 149 DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK 208
Query: 432 QGRAIILTTHSMEEAEALCD 451
I++ TH+M++A + D
Sbjct: 209 NKVTILIVTHNMQQAARVSD 228
|
Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 47/265 (17%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSG 306
NL K + G K + +S + GE G+LG +GAGK+ + ++ G+ TSG
Sbjct: 4 KNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 307 -----TAYVQGLDIRTDMDRIYTSMGVC-----PQEDLLWET-------LTGREHLLF-- 347
A + ++ VC P+E W + R ++
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 348 ----YGR---LKNL---------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391
YG L N+ +G + ++ V L H A SGG K+
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR--ITHIARDLSGGEKQ 175
Query: 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEAL 449
R+ +A L P + DEP+ LDP + + N ++ A G +++LT+H E E L
Sbjct: 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235
Query: 450 CDRLGIFVDGSLQCIGNPKELKARY 474
D+ +G ++ G P E+ A +
Sbjct: 236 SDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 29/216 (13%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------DMDRIY 323
LS + +GE ++GPNGAGK+T ++ M G+T + SG+ G + R Y
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 324 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
S P + +W LT L P T+ + + L +
Sbjct: 77 LSQQQTPPFAMPVWHYLT-------------LHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 383 GKYSGGMKRRLSVA-----ISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKR-AKQGR 434
+ SGG +R+ +A I+ NP +++ +DEP LD A ++ L ++ +QG
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
AI++++H + R + G L G +E+
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEV 219
|
Length = 248 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--------TTSGTAYVQGLDI-- 315
AV + +P G+ ++GP+G GK+T + + R + G G D+
Sbjct: 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLR---SLNRMNDLIEGCSLKGRVLFDGTDLYD 84
Query: 316 -RTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
R D + +G V Q + +++ E++ F R+ G + + VE SL+ ++
Sbjct: 85 PRVDPVEVRRRIGMVFQQPNPFPKSIY--ENIAFGARINGYTGD-MDELVERSLRKAAVW 141
Query: 374 HGGVADK--QAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
DK ++G SGG ++RL +A ++ P+V+ MDEP + LDP S + +
Sbjct: 142 DE-CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIF 456
K+ I++ TH+M++A + D F
Sbjct: 201 KKNFTIVIVTHNMQQAVRVSDMTAFF 226
|
Length = 269 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 46/205 (22%), Positives = 99/205 (48%), Gaps = 18/205 (8%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---------LDIRT 317
+ G+S+ + + ++GP+G GK+TF+ + + V+G + R
Sbjct: 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGRVEFFNQNIYERRV 81
Query: 318 DMDRIYTSMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH- 374
+++R+ + V P+ +L ++ +++ + ++ + + VE +LK +L+
Sbjct: 82 NLNRLRRQVSMVHPKPNLF--PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE 139
Query: 375 -GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAK 431
K A SGG ++RL +A +L PKV+ MDEP GLDP + + ++++ R +
Sbjct: 140 IKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR 199
Query: 432 QGRAIILTTHSMEEAEALCDRLGIF 456
+++ +H++ + L D F
Sbjct: 200 SELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 282 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--------MDRIYTSMGVCPQED 333
++G +GAGKTT + ++ G R T G Y++G DIR RI G C Q D
Sbjct: 911 LMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIRISGFPKKQETFARI---SGYCEQND 962
Query: 334 LLWETLTGREHLLFYGRLKNLKGPA------LTQAVEESLKSVNLFHGGVADKQAGKYSG 387
+ +T RE L++ L+ K + V E ++ NL V S
Sbjct: 963 IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022
Query: 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTH 441
++RL++A+ L+ NP +++MDEP++GLD + + V+ GR ++ T H
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
Length = 1470 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
G + L++ +P G ++GPNG GK+T + + + G ++ G I+
Sbjct: 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQH-- 73
Query: 320 DRIYTSMGVCPQEDLLWETLTGR-----EHLLFYGRLKNLKGPALTQ-------AVEESL 367
Y S V + LL + T + L+ GR + P T+ AV +++
Sbjct: 74 ---YASKEVARRIGLLAQNATTPGDITVQELVARGRYPH--QPLFTRWRKEDEEAVTKAM 128
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
++ + H +AD+ SGG ++R +A+ L ++ +DEP+T LD + + +L ++
Sbjct: 129 QATGITH--LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 428 KR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++G + H + +A L +G + G PKE+
Sbjct: 187 SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
Length = 265 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 43/203 (21%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324
+ +S + +GE G++G GAGK+T I + G + G+DI T ++ + +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
S+ + PQ+ LF G +++ P + EE ++ + GG+
Sbjct: 83 SLTIIPQDP-----------TLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGL------N 125
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444
S G ++ L +A +L+ P+V+ +DE + +D A+ + ++ I+ H +
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLR 185
Query: 445 EAEALCDRLGIFVDGSLQCIGNP 467
D++ + G ++ +P
Sbjct: 186 TI-IDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 4e-09
Identities = 66/297 (22%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 203 SSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNP 262
SS + S+ + ++F+S E+ E + +E+ ++PG ++I N + RD P
Sbjct: 598 SSIVQASVSLKRLRIFLSHEE----LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPP 652
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+NG++ ++P G ++G G GK++ +S ++ G +++G
Sbjct: 653 ---TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------- 699
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES---LKSVNLFHGGVAD 379
S+ PQ+ + + + RE++LF L Q V E+ L + + G
Sbjct: 700 --SVAYVPQQAWI-QNDSLRENILFGKALN----EKYYQQVLEACALLPDLEILPSGDRT 752
Query: 380 KQAGK---YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV---KRAKQG 433
+ K SGG K+R+S+A ++ N + D+P + +D +++ V + +
Sbjct: 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHEE 490
+ IL TH + + D + + G + +G+ +EL R G F T + D ++
Sbjct: 813 KTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQ 868
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-09
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+ K + G A++G+SL++ GE +LG NGAGK+T + ++ G+ + SG
Sbjct: 5 GITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 310 VQG 312
V G
Sbjct: 59 VDG 61
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 7e-09
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 48/279 (17%)
Query: 222 EKPDVT---QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGE 278
+KP+VT +Q+ L +N+ YP + + + GLSL + +GE
Sbjct: 320 QKPEVTFPTTSTAAADQVSLT--------LNNVSFTYPDQ----PQPVLKGLSLQIKAGE 367
Query: 279 CFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQE-D 333
+LG G GK+T + + +TR G + G I + ++ V Q
Sbjct: 368 KVALLGRTGCGKSTLLQL---LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH 424
Query: 334 LLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSVNLFHGGVADKQAG--------- 383
L TL R++LL L P + +A+ E L+ V L + + G
Sbjct: 425 LFSATL--RDNLL-------LAAPNASDEALIEVLQQVGL--EKLLEDDKGLNAWLGEGG 473
Query: 384 -KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS-RNNLWNVVKRAKQGRAIILTTH 441
+ SGG +RRL +A +L+ + ++ +DEP+ GLD + R L + + A Q + +++ TH
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITH 532
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+ E DR+ + +G + G +EL A+ G Y
Sbjct: 533 RLTGLEQF-DRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 18/206 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRT----DM 319
A++ +SL + +GE + G NGAGK+T + ++ G+ T G +G +++ D
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 320 DR-----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 374
+R I+ + + + +L G E + G + A+ ++ L + L
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNE-ITPGGIMDY---DAMYLRAQKLLAQLKL-D 134
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QG 433
A G G ++ + +A +L +++ +DEP+ L + L ++++ K G
Sbjct: 135 INPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDG 459
A I +H + E +A+ D + + DG
Sbjct: 194 IACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 40/235 (17%)
Query: 255 YPGRDGNPEKVAVNGL---------SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
Y R ++ ++GL S ++ +GE G+ G GAG++ + ++ G TR T+
Sbjct: 248 YRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA 307
Query: 306 GTAYVQG--LDIRTDMDRIYTSMGVCPQEDLLWE------------TLTGREHLLFYGRL 351
G Y+ G +DIR+ D I + +CP ED E ++ R H L G L
Sbjct: 308 GQVYLDGKPIDIRSPRDAIRAGIMLCP-EDRKAEGIIPVHSVADNINISARRHHLRAGCL 366
Query: 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG------MKRRLSVAISLIGNPKV 405
N + A + ++S+N+ ++ SGG + R LS + KV
Sbjct: 367 INNRWEAEN--ADRFIRSLNIKTPS-REQLIMNLSGGNQQKAILGRWLSEDM------KV 417
Query: 406 VYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
+ +DEP+ G+D +++ ++NV+ + A QG A++ + + E + DR+ + +G
Sbjct: 418 ILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472
|
Length = 501 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 39/211 (18%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-----------AYVQGLD 314
AV+G++L L GE G++G +G GK+TF +IG+ + T G +
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 315 IRTDMDRIYTS--------MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
+R+D+ I+ M + +++ E L ++ +L Q V++
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTI---GEIIAEPLR-----TYHPKLS-------RQEVKDR 140
Query: 367 LKSVNLFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+K++ L G + ++ ++SGG +R+ +A +LI PK++ DEP + LD + + +
Sbjct: 141 VKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQV 200
Query: 424 WNVVK--RAKQGRAIILTTHSMEEAEALCDR 452
N+++ + + G ++I H + + + DR
Sbjct: 201 VNLLQQLQREMGLSLIFIAHDLAVVKHISDR 231
|
Length = 331 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 61/257 (23%)
Query: 245 AIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
A + +RK Y G + G+ L + GE ++GP+G GK+T + M+ G+ R
Sbjct: 2 AGLKLQAVRKSYDG--KTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56
Query: 304 TSGTAYVQGLDIRTDM---DR----------IYTSMGVCPQEDLLWETLTGREHLLFYGR 350
TSG ++ G + ++ DR +Y M V RE++ YG
Sbjct: 57 TSGEIWIGGRVV-NELEPADRDIAMVFQNYALYPHMSV-------------RENMA-YG- 100
Query: 351 LKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408
LK P + + V E+ + + L + D++ + SGG ++R+++ +++ P V
Sbjct: 101 LKIRGMPKAEIEERVAEAARILEL--EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158
Query: 409 DEPSTGLDPASRNNLWNVVKRAKQGRAIILT------------THSMEEAEALCDRLGIF 456
DEP + LD R Q R I TH EA L DR+ +
Sbjct: 159 DEPLSNLDAKLRV----------QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM 208
Query: 457 VDGSLQCIGNPKELKAR 473
G + IG P E+ +
Sbjct: 209 NGGVAEQIGTPVEVYEK 225
|
Length = 356 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 47/189 (24%), Positives = 96/189 (50%), Gaps = 19/189 (10%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR--IYTSMG 327
+SL + ++G +G+GK+T +++G + SG + G ++ D+DR + +
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK-DIDRHTLRQFIN 551
Query: 328 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQA 382
PQE ++ + + E+LL G +N+ + A E + ++++ L + ++
Sbjct: 552 YLPQEPYIF-SGSILENLLL-GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR----NNLWNVVKRAKQGRAIIL 438
SGG K+R+++A +L+ + KV+ +DE ++ LD + NNL N+ Q + II
Sbjct: 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-----QDKTIIF 664
Query: 439 TTHSMEEAE 447
H + A+
Sbjct: 665 VAHRLSVAK 673
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 56/277 (20%)
Query: 222 EKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFG 281
EK T+ ER + + YPGRD + A++ +SL + GE
Sbjct: 316 EKDTGTRAIERARGDVEFRNVTFR---------YPGRD----RPALDSISLVIEPGETVA 362
Query: 282 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 341
++G +G+GK+T ++++ SG + G D+ D +L
Sbjct: 363 LVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA----------------DYTLASL-- 404
Query: 342 REHL--------LFYGRL-KNLKGPALTQA----VEESLKSVNL----------FHGGVA 378
R + LF + N+ QA +E +L + +
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 438
+ SGG ++RL++A +L+ + ++ +DE ++ LD S + ++R QGR ++
Sbjct: 465 EN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523
Query: 439 TTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
H + E DR+ + DG + G EL AR G
Sbjct: 524 IAHRLSTIEK-ADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 25/205 (12%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--LDIRTDMDRI-- 322
VN +S L GE G+ G GAG+T + ++ G TSG + G + R+ D +
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 323 ---YTS---------MGVCPQEDLLWETLTGREHLL-FYGRLKNLKGPALTQAVEESLKS 369
Y S +G+ +E++ +LT + G LK+ QAV + ++
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENM---SLTALRYFSRAGGSLKH---ADEQQAVSDFIRL 381
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
N+ ++ G SGG ++++++A L+ PKV+ +DEP+ G+D ++ ++ ++ +
Sbjct: 382 FNI-KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 430 AKQ-GRAIILTTHSMEEAEALCDRL 453
K G +IIL + M E + DR+
Sbjct: 441 FKAEGLSIILVSSEMPEVLGMSDRI 465
|
Length = 501 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 27/287 (9%)
Query: 218 FVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSG 277
F +E D +RE P A+ ++ + V +S +G
Sbjct: 309 FFDLE--DSVFQREEPADAPELPNVKGAVEFRHITFEFAN-----SSQGVFDVSFEAKAG 361
Query: 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQE-DLL 335
+ ++GP GAGKTT I+++ + T G + G+DI T + + S+ Q+ L
Sbjct: 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF 421
Query: 336 WETL-----TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390
++ GRE + K A + + + G ++ + SGG +
Sbjct: 422 NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG----ERGNRLSGGER 477
Query: 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH---SMEEAE 447
+RL++A +++ N ++ +DE ++ LD + + N + ++ R + H ++ A+
Sbjct: 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNAD 537
Query: 448 ALCDRLGIFVD-GSLQCIGNPKELKARYGGSYVFTMTTSADHEEEVE 493
L +F+D G L G+ +EL + G Y + +
Sbjct: 538 -----LVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGLLTNQPAT 579
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-08
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGV 328
L + +GE + G NGAGKTT + ++ G+ SG + G D R +G
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388
P L L+ E+L F L L G Q +L V L G D + S G
Sbjct: 90 LPG---LKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGL--AGYEDTLVRQLSAG 141
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTH 441
K+RL++A + + +DEP LD L N + A + G A ++TTH
Sbjct: 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGI-TLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ K +PG A++ ++L + ++G NGAGK+T + + GI + SG+
Sbjct: 3 NISKSFPGVK------ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL 56
Query: 310 VQG--LDIRTDMDRIYTSMGVCPQE----------DLLWETLTGREHL--LFYGRLKNLK 355
QG +D ++ + + + + QE D +W GR +F + K +
Sbjct: 57 FQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMW---LGRYPTKGMFVDQDKMYR 113
Query: 356 GPALTQAVEESLK-SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414
T+A+ + L ++ + S + + +A + N K+V MDEP++
Sbjct: 114 D---TKAIFDELDIDID------PRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164
Query: 415 LDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDG 459
L N+L+ ++++ K +G I+ +H MEE LCD + I DG
Sbjct: 165 LTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 32/212 (15%)
Query: 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR------I 322
G+ L + GE ++G +G+GK+T ++++ G+ +SG + G + MD
Sbjct: 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL-HQMDEEARAKLR 86
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL----------TQAVEESLKSVNL 372
+G Q +L TL E N++ PAL A L+ + L
Sbjct: 87 AKHVGFVFQSFMLIPTLNALE---------NVELPALLRGESSRQSRNGAKA-LLEQLGL 136
Query: 373 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV--KRA 430
G D + SGG ++R+++A + G P V++ DEP+ LD + + + +++
Sbjct: 137 --GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
+ G +IL TH ++ A A CDR V+G LQ
Sbjct: 195 EHGTTLILVTHDLQLA-ARCDRRLRLVNGQLQ 225
|
Length = 228 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 42/273 (15%)
Query: 219 VSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKV-----AVNGLSLA 273
+S+E P ++ +EQ + G + + L +P R G +V AV +S
Sbjct: 290 ISLEHPA--KQEPPIEQDTVVDGEPILQVRN-LVTRFPLRSGLLNRVTREVHAVEKVSFD 346
Query: 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-----------RTDMDRI 322
L GE ++G +G+GK+T ++ + + G G I R D+ I
Sbjct: 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406
Query: 323 ----YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 378
Y S+ P++ + + E L +G L G A V L+ V G+
Sbjct: 407 FQDPYASLD--PRQTVGDSIM---EPLRVHGLLP---GKAAAARVAWLLERV-----GLL 453
Query: 379 DKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-- 432
+ A +Y SGG ++R+ +A +L NPKV+ DE + LD + R + N++ ++
Sbjct: 454 PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF 513
Query: 433 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465
G A + +H M E + R+ + G + IG
Sbjct: 514 GIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-08
Identities = 59/216 (27%), Positives = 89/216 (41%), Gaps = 69/216 (31%)
Query: 228 QERERVEQLLLEPGT---SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 284
Q+R ++ + PG I ++NL K + R + ++ LS +LP G G++G
Sbjct: 304 QKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR------LLIDDLSFSLPPGGIVGIIG 357
Query: 285 PNGAGKTTFISMMIGITRTTSGT---------AYV-QGLDIRTDMDRIYTSMGVCPQEDL 334
PNGAGK+T M+ G + SGT AYV Q R +D
Sbjct: 358 PNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS---RDALD----------PNKT 404
Query: 335 LWETLTGREHLLFYGRLK----------NLKGPALTQAVEESLKSVNLFHGGVADKQ--A 382
+WE ++G ++ G + N KG D+Q
Sbjct: 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG---------------------DQQKKV 443
Query: 383 GKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLD 416
G SGG + RL +A +L GN V+ +DEP+ LD
Sbjct: 444 GVLSGGERNRLHLAKTLKQGGN--VLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME 444
SGG KRR+++A L P + DEP+ GLDP + + KQG+ IIL TH ++
Sbjct: 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
Query: 445 EAEALCDRLGIFVDGSL 461
R F DG +
Sbjct: 227 NVLEWTKRTIFFKDGKI 243
|
Length = 305 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 21/186 (11%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGV 328
+S ++ G+ G+LG G+GK+T +S + + T G + G+ + + + + GV
Sbjct: 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGDIQIDGVSWNSVPLQKWRKAFGV 81
Query: 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV----------NLFHGGVA 378
PQ+ ++ + T R++L YG+ + + A E LKSV L GG
Sbjct: 82 IPQKVFIF-SGTFRKNLDPYGKWSDEE--IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV 138
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 438
S G K+ + +A S++ K++ +DEPS LDP + + +K+A +IL
Sbjct: 139 ------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVIL 192
Query: 439 TTHSME 444
+ H +E
Sbjct: 193 SEHRIE 198
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326
V ++L + GE ++G NG+GK+T ++ G+ + SG + G + + Y
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK- 397
Query: 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAG-- 383
L+ + HL + +L +G A Q +E+ L+ + L H + D +
Sbjct: 398 --------LFSAVFSDYHL--FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL 447
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV--KRAKQGRAIILTTH 441
K S G K+RL++ ++L+ ++ +DE + DPA R + V+ +QG+ I +H
Sbjct: 448 KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
|
Length = 546 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 55/237 (23%)
Query: 265 VAVNG----LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--- 317
VAV+ LS + +GE ++GPNGAGK+T ++ M G+ SG+ G +
Sbjct: 6 VAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSA 64
Query: 318 ---DMDRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQ------AVEESL 367
R Y S P + +++ LT L P T+ A+ E
Sbjct: 65 AELARHRAYLSQQQTPPFAMPVFQYLT-------------LHQPDKTRTEAVASALNEVA 111
Query: 368 KSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLI-----GNP--KVVYMDEPSTGLDP 417
+++ L DK + SGG +R+ +A ++ NP +++ +DEP LD
Sbjct: 112 EALGL-----DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166
Query: 418 ASRNNLWNVVKR-AKQGRAIILTTH----SMEEAEALCDRLGIFVDGSLQCIGNPKE 469
A + L ++ +QG A+++++H ++ A DR+ + G L G E
Sbjct: 167 AQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA----DRVWLLKQGKLLASGRRDE 219
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 29/186 (15%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS----MGVCPQE 332
GE G+LGPNG GKTTF+ ++ G+ + G D++ Y S V E
Sbjct: 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEG----SEEDLKVSYKPQYISPDYDGTV---E 419
Query: 333 DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392
DLL + ++ E +K +NL + ++ + SGG +R
Sbjct: 420 DLLRSAIRSAFGSSYF--------------KTEIVKPLNL--EDLLERPVDELSGGELQR 463
Query: 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALC 450
+++A +L + +DEPS LD R + V++R + ++ H + + +
Sbjct: 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523
Query: 451 DRLGIF 456
DRL +F
Sbjct: 524 DRLIVF 529
|
Length = 591 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 46/196 (23%)
Query: 249 DNLRKIYPGRDG--NPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
+L+K YP + G PE++ A++G+S L G+ ++G +G GK+T ++ I T
Sbjct: 9 IDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT 68
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF---YGRLK--------- 352
G Y QG D+ D + L + ++F YG L
Sbjct: 69 GGELYYQGQDL-LKADPEA------------QKLLRQKIQIVFQNPYGSLNPRKKVGQIL 115
Query: 353 --------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLI 400
+L + + V G+ + +Y SGG ++R+++A +L+
Sbjct: 116 EEPLLINTSLSAAERREKALAMMAKV-----GLRPEHYDRYPHMFSGGQRQRIAIARALM 170
Query: 401 GNPKVVYMDEPSTGLD 416
+P VV DEP + LD
Sbjct: 171 LDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 32/243 (13%)
Query: 250 NLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306
NL K + R G AV +S L G+ ++G NG+GK+T M+ G+ TSG
Sbjct: 9 NLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG 68
Query: 307 TAYVQGL-----DIRTDMDRIYT-----SMGVCPQED---LLWETLTGREHLLFYGRLKN 353
+ D RI + + P+ +L L +
Sbjct: 69 EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR---------LNTD 119
Query: 354 LKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
L+ + + E+L+ V L H + G K+R+++A +LI PK++ DE
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHM---LAPGQKQRVALARALILRPKIIIADEA 176
Query: 412 STGLDPASRNNLWNVV--KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
LD + R+ L N++ + KQG + I T + + + D++ + +G + G+ +
Sbjct: 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTAD 236
Query: 470 LKA 472
+ A
Sbjct: 237 VLA 239
|
Length = 267 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 62/241 (25%)
Query: 258 RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317
AV G+S + +GE ++G +G+GK+ ++G+ + A+ G I
Sbjct: 17 HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-PSPAAAHPSG-SILF 74
Query: 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN------ 371
D EDLL + R+ L+ ++G + +E + S+N
Sbjct: 75 D------------GEDLL--AASERQ-------LRGVRGNKIGMIFQEPMTSLNPLHTIG 113
Query: 372 -------LFHGGVADKQA--------------------GKY----SGGMKRRLSVAISLI 400
H G++ A Y SGG ++R+ +A++L
Sbjct: 114 KQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA 173
Query: 401 GNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVD 458
P ++ DEP+T LD + + +++K +A+ G AI+ TH + DR+ +
Sbjct: 174 NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233
Query: 459 G 459
G
Sbjct: 234 G 234
|
Length = 534 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
Y + V +S G+ ++GP GAGK+T I+++ + SG + G D
Sbjct: 344 YDNS-----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398
Query: 315 IRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLK 368
IRT + ++ V Q+ L+ + +++ GR + QA + +
Sbjct: 399 IRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRV-GRPDATDEEMRAAAERAQAHDFIER 456
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ + V ++ + SGG ++RL++A +L+ +P ++ +DE ++ LD + + +
Sbjct: 457 KPDGY-DTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 429 RAKQGRAIILTTH---SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+GR + H ++ A DR+ +F +G + G+ EL AR G
Sbjct: 516 ELMKGRTTFIIAHRLSTVRNA----DRILVFDNGRVVESGSFDELVARGG 561
|
Length = 588 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 49/186 (26%), Positives = 94/186 (50%), Gaps = 11/186 (5%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--LDIRTDMD-----RI 322
++L P GE +LGP+GAGK++ + ++ + SGT + G D +
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-GGVADKQ 381
++G+ Q+ LW LT +++L+ + L G + QA+ + K + AD+
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVL-GLSKDQALARAEKLLERLRLKPYADRF 138
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTT 440
SGG ++R+++A +L+ P+V+ DEP+ LDP + ++++ + G ++ T
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198
Query: 441 HSMEEA 446
H +E A
Sbjct: 199 HEVEVA 204
|
Length = 242 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 55/285 (19%)
Query: 208 PSLGRQDSKVFVSMEKPD---VTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEK 264
P+L Q VS+++ + +++ER + L+PG I + Y D K
Sbjct: 575 PNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNG----YFSWDSKTSK 630
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324
++ ++L +P G ++G G GKT+ IS M+G ++ V I
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRG 679
Query: 325 SMGVCPQEDLLWETLTGREHLLF--------YGR----------LKNLKGPALTQAVEES 366
S+ PQ ++ T RE++LF Y R L L G LT+ E
Sbjct: 680 SVAYVPQVSWIFNA-TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGE-- 736
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN- 425
+ VN+ SGG K+R+S+A ++ N + D+P + LD + +++
Sbjct: 737 -RGVNI-------------SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+K +G+ +L T+ + L DR+ + +G ++ G EL
Sbjct: 783 CMKDELKGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGTFAEL 826
|
Length = 1495 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 59/256 (23%), Positives = 120/256 (46%), Gaps = 37/256 (14%)
Query: 221 MEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECF 280
+E P ++ E L I +++L + P DG K L+ LP+G+
Sbjct: 328 LETPLAHPQQGEKE---LASNDPVTIEAEDLEILSP--DG---KTLAGPLNFTLPAGQRI 379
Query: 281 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETL 339
++GP+GAGKT+ ++ ++G G+ + G+++R D + ++ L W
Sbjct: 380 ALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESW--------RKHLSW--- 427
Query: 340 TGREHLLFYGRLKN---LKGPALT-QAVEESLKSVN-------LFHG---GVADKQAGKY 385
G+ L +G L++ L P + + ++++L++ L G + D QA
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD-QAAGL 486
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445
S G +RL++A +L+ +++ +DEP+ LD S + + A + + ++ TH +E+
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 446 AEALCDRLGIFVDGSL 461
D++ + DG +
Sbjct: 547 LAQ-WDQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 262 PEKVAVNGL-------------SLALPSGECFGMLGPNGAGKTT----FISM--MIGITR 302
P K+ V L +L + + +GP+G GK+T F M + R
Sbjct: 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 303 TTSGTAYVQG---LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPA 358
G + G L + D+ + +G+ Q+ + ++ +++ F RL + L
Sbjct: 71 AE-GEILLDGENILTPKQDIALLRAKVGMVFQKPTPF-PMSIYDNIAFGVRLFEKLSRAE 128
Query: 359 LTQAVEESLKSVNLFHGGVADK--QAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
+ + VE +L L+ V DK Q+G SGG ++RL +A + P+V+ +DEP + L
Sbjct: 129 MDERVEWALTKAALW-NEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187
Query: 416 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
DP S + ++ KQ +++ TH+M++A D G L
Sbjct: 188 DPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233
|
Length = 260 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 378 ADKQAGKYSGGMKRRLSVAISLI---GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
S G KR L++ ++L+ ++ +DEP GL P L ++K +
Sbjct: 183 LKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKG 242
Query: 435 A-IILTTHS 442
A +I TTHS
Sbjct: 243 AQLIFTTHS 251
|
Length = 256 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 23/187 (12%)
Query: 262 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321
+ ++ L+ + GE + G +GAGKT+ + + G+ SG + + D
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR-----ISMPADSAL 458
Query: 322 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----G 375
++ PQ L TL RE L Y A + L V L
Sbjct: 459 LFL-----PQRPYLPQGTL--RE-ALCYPNAAPDFSDA---ELVAVLHKVGLGDLAERLD 507
Query: 376 GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 435
SGG ++RL+ A L+ PK V++DE ++ LD + + L+ ++K
Sbjct: 508 EEDRWDR-VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDAT 566
Query: 436 IILTTHS 442
+I H
Sbjct: 567 VISVGHR 573
|
Length = 604 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RTDMDRIY 323
++ +S L GE G+ G GA +T + + GI ++GT + G I + I
Sbjct: 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322
Query: 324 T----------SMGVCPQEDLLWETLTG--REHLLFYGRLKNLKGPALTQAVEESLKSVN 371
S G+ D+ + +L R + G L N + + TQ V +S++
Sbjct: 323 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT 382
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-A 430
H Q G SGG ++++ + L+ P+++ +DEP+ G+D ++ ++ ++ A
Sbjct: 383 PGH----RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA 438
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
K+ + II+ + M E + DR+ + +G + I + K
Sbjct: 439 KKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477
|
Length = 491 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTD 318
G +++ ++ + L L G G+LG NGAGK+T I ++ G SG +G+
Sbjct: 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI----- 375
Query: 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 378
+G Q L E L E L + L L L Q + + L F G
Sbjct: 376 ------KLGYFAQHQL--EFLRADESPLQH--LARLAPQELEQKLRDYLGGFG-FQGDKV 424
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
++ ++SGG K RL +A+ + P ++ +DEP+ LD R L
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469
|
Length = 638 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 9e-07
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +NL K Y G+ + + +SL + G+ G++G NGAGK+T + ++ G
Sbjct: 1 IELENLSKTYGGK------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE 54
Query: 306 GT 307
G
Sbjct: 55 GI 56
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR---- 321
A+ G++ + GE + G +GAGK+T + ++ GI R ++G + G DI +R
Sbjct: 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPF 76
Query: 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+ +G+ Q+ L T +++ + G + + V +L V G+ DK
Sbjct: 77 LRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV-----GLLDKA 131
Query: 382 AG---KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAII 437
+ SGG ++R+ +A +++ P V+ DEP+ LD A + + + + G ++
Sbjct: 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVL 191
Query: 438 LTTHSM 443
+ TH +
Sbjct: 192 MATHDI 197
|
Length = 222 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Query: 284 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343
G NG GK++ + M+ GI + +SG Y + +I T +G L E +T E
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG--HNLGLKLE-MTVFE 89
Query: 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403
+L F+ + N A K +L D++ S GM++ +++A +
Sbjct: 90 NLKFWSEIYN--SAETLYAAIHYFKLHDLL-----DEKCYSLSSGMQKIVAIARLIACQS 142
Query: 404 KVVYMDEPSTGLDPASRNNLWN-VVKRAKQGRAIILTTHS 442
+ +DE T L +R+ L N +V +A G ++L++H
Sbjct: 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYIN 60
+ + G+ Y L + I +L ++ + GL + + + +++Y
Sbjct: 128 RLLVSGVSPLKYLLGKILGDLLVGLIQLLIILLL--LFGL-GIPFGNLLLLLLLFLLYGL 184
Query: 61 LQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPG 120
IAL L+ +LF N + A ++ I + L G F + + +WI + + P
Sbjct: 185 AYIALGALLGSLFKNSEAAILV--ISILILLLSGFFGGLFPLPNMPSFLQWIFS--IIPF 240
Query: 121 FALYRGLYEFGTYSF 135
FA GL
Sbjct: 241 FAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 33/264 (12%)
Query: 203 SSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDN--LRKIYPGRDG 260
SS L R S+VF ++ P QE R + S ++ +N +K +P
Sbjct: 1161 SSIDVDGLMRSVSRVFKFIDLP---QEEPRPSGGGGKYQLSTVLVIENPHAQKCWP---- 1213
Query: 261 NPEKVAVNGL---------------SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ ++ V GL S ++ G+ G+LG G+GK+T +S ++ + +T
Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-STE 1272
Query: 306 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
G + G+ + + + GV PQ+ ++ + T R++L Y + + + + + V
Sbjct: 1273 GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIF-SGTFRKNLDPYEQWSDEEIWKVAEEV- 1330
Query: 365 ESLKSVNLFHGGVADKQA--GKY--SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
LKSV D G Y S G K+ + +A S++ K++ +DEPS LDP +
Sbjct: 1331 -GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389
Query: 421 NNLWNVVKRAKQGRAIILTTHSME 444
+ +K++ +IL+ H +E
Sbjct: 1390 QIIRKTLKQSFSNCTVILSEHRVE 1413
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQG--LDIRT 317
NP V+ +S +L GE G+ G GAG+T + + G G ++ G + IR
Sbjct: 272 NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN 331
Query: 318 DM------------DR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 361
DR I MGV +++ TL + R+ + A +
Sbjct: 332 PQQAIAQGIAMVPEDRKRDGIVPVMGVG--KNI---TLAALDRFTGGSRIDD---AAELK 383
Query: 362 AVEESLK--SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+ ES++ V + + SGG +++ +A L+ NPK++ +DEP+ G+D +
Sbjct: 384 TILESIQRLKVKTAS---PELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440
Query: 420 RNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDR 452
+ ++ ++ + +QG AII+ + + E L DR
Sbjct: 441 KYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474
|
Length = 506 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL-----DIRTDMD 320
AV LS L G+ ++G NG+GK+T M+ G+ TSG + D
Sbjct: 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ 87
Query: 321 RIY-----TSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH 374
RI S + P++ + + L F RL +L+ + + E+L+ V
Sbjct: 88 RIRMIFQDPSTSLNPRQRI-------SQILDFPLRLNTDLEPEQREKQIIETLRQV---- 136
Query: 375 GGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV--K 428
G+ A Y + G K+RL +A +LI PKV+ DE LD + R+ L N++
Sbjct: 137 -GLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
Query: 429 RAKQGRAIILTT 440
+ KQG + I T
Sbjct: 196 QEKQGISYIYVT 207
|
Length = 267 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 267 VNGLSL-ALP---SGECFGMLGPNGAGKTTFISMMIGIT--------------------R 302
VNG L LP G+ G+LGPNG GK+T + ++ G R
Sbjct: 86 VNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFR 145
Query: 303 TTSGTAYVQGL---DIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
T Y + L ++R Y DL+ + + G+ L LK
Sbjct: 146 GTELQNYFKKLYEGELRAVHKPQYV--------DLIPKVVKGKVGEL-------LKKVDE 190
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+E ++ + L V D+ + SGG +R+++A +L+ + V + DEPS+ LD
Sbjct: 191 RGKFDEVVERLGL--ENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ 248
Query: 420 RNNLWNVVKR-AKQGRAIILTTHSMEEAEALCD 451
R N V++ A+ G+ +I+ H + + L D
Sbjct: 249 RLNAARVIRELAEDGKYVIVVEHDLAVLDYLSD 281
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+ + K+ P P+K + +SL+ G G+LG NGAGK+T + +M G+ + +G A
Sbjct: 8 NRVSKVVP-----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA 62
Query: 309 YVQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343
G+ + G PQE L T T RE
Sbjct: 63 RPAPGIKV-----------GYLPQEPQLDPTKTVRE 87
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKT-TFISMMIGITRTTSGTAYVQGLDIR-------- 316
AV LS +L GE ++G +G+GK+ T +++M + + G + +R
Sbjct: 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA-GGLVQCDKMLLRRRSRQVIE 89
Query: 317 ------TDMDRIY-TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
M + M + QE + L T E + RL +G + +A+ E+
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH--QGASREEAMVEAK 147
Query: 368 KSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+ ++ A +Y SGGM++R+ +A++L P V+ DEP+T LD + +
Sbjct: 148 RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207
Query: 424 WNVVKRAKQGRA--IILTTHSMEEAEALCDRLGIFVDG 459
++K ++ + +I TH M + DR+ + G
Sbjct: 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-05
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+ K+ P P+K + +SL+ G G+LG NGAGK+T + +M G+ + G A
Sbjct: 11 RVSKVVP-----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR 65
Query: 310 VQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343
G+ + G PQE L T RE
Sbjct: 66 PAPGIKV-----------GYLPQEPQLDPEKTVRE 89
|
Length = 556 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-05
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445
SGG K RL++A L+ NP ++ +DEP+ LD S L +K G +IL +H
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK-EYPG-TVILVSHDRYF 129
Query: 446 AEALCDR 452
+ + +
Sbjct: 130 LDQVATK 136
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 59/238 (24%)
Query: 249 DNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
+ L+ +P R G V V +S L GE G++G +G+G ++
Sbjct: 279 EQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSG------------KS 326
Query: 304 TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-------NLKG 356
T+G A + R+ S G + L R+ L R++ +
Sbjct: 327 TTGLALL----------RLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376
Query: 357 PALT--QAVEESLKSVNLFHGGVADKQA--------------------GKYSGGMKRRLS 394
P L Q +EE L+ V+ A ++ ++SGG ++R++
Sbjct: 377 PRLNVLQIIEEGLR-VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIA 435
Query: 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR--AIILTTHSMEEAEALC 450
+A +LI P ++ +DEP++ LD + + ++K +Q A + +H + ALC
Sbjct: 436 IARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALC 493
|
Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--DRIYT 324
+ SL L G+ ++G +G+GK+T ++ G+ + SG G+ R ++ + +
Sbjct: 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP-REEIPREVLAN 553
Query: 325 SMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSV------NLFHG 375
S+ + Q+ L+E T R++L + +L A+ + + S L G
Sbjct: 554 SVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612
Query: 376 GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
G SGG ++RL +A +L+ NP ++ +DE ++ LDP
Sbjct: 613 G------ANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 46/203 (22%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 254 IYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313
YP D A+ ++ L G+ G+ GP G+GK+T +S++ + G +
Sbjct: 322 TYPQTD----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI 377
Query: 314 ---DIRTDMDRIYTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQA-VEESLK 368
++ D R + + V Q L+ +T+ L GR P TQ +E +
Sbjct: 378 PLTKLQLDSWR--SRLAVVSQTPFLFSDTVANNIAL---GR------PDATQQEIEHVAR 426
Query: 369 SVNLFHGGVA------DKQAGK----YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
++ H + D + G+ SGG K+R+S+A +L+ N +++ +D+ + +D
Sbjct: 427 LASV-HDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485
Query: 419 SRNNLWNVVKRAKQGRAIILTTH 441
+ + + + +++ +GR +I++ H
Sbjct: 486 TEHQILHNLRQWGEGRTVIISAH 508
|
Length = 569 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 257 GRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316
DG ++ +SL + GE ++GP+G+GK+T + +++G SG+ + G D+
Sbjct: 462 RPDGPL---ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518
Query: 317 T-DMDRIYTSMGVCPQE-----DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
D+ + +GV Q ++E + G L L A + E ++++
Sbjct: 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL----TLDEAWEAARMAGLAEDIRAM 574
Query: 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
+ V + G SGG ++RL +A +L+ P+++ DE ++ LD ++ + ++R
Sbjct: 575 PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL 634
Query: 431 KQGRAII---LTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
K R +I L+T DR+ + G + G EL AR G
Sbjct: 635 KVTRIVIAHRLST-IRN-----ADRIYVLDAGRVVQQGTYDELMAREG 676
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 26/246 (10%)
Query: 192 YFLQNFKK--KSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISD 249
+++NF+K S + KP K+ V+ + + P I++
Sbjct: 7 AWVKNFRKLIDSDPIYYKPY------KLGVAYKNLSAYGVAADSDYQPTFPNALLKILTR 60
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTS 305
RK+ RD + L P GE +LG G+G +T + + T
Sbjct: 61 GFRKLKKFRDTKTFDILKPMDGLIKP-GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 306 GTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHLLFYGRLK--NLKGPALT-Q 361
G G+ ++ + Y V + D+ + LT E L F R K + ++ +
Sbjct: 120 GVITYDGIT-PEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE 178
Query: 362 AVEESLKSVNL--------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
+ + V + + V + SGG ++R+S+A + +G K+ D +
Sbjct: 179 EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATR 238
Query: 414 GLDPAS 419
GLD A+
Sbjct: 239 GLDSAT 244
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 28/217 (12%)
Query: 262 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI----TRTTSGT---------- 307
+ V+G+SL L G ++G +G+GK+ + +GI R T+G
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
++G I T M ++ L RE L G+ PA + +L
Sbjct: 74 CALRGRKIATIMQNPRSAF-----NPLHTMHTHARETCLALGK------PADDATLTAAL 122
Query: 368 KSVNLFHGG-VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
++V L + V + SGGM +R+ +A++L+ + DEP+T LD ++ + ++
Sbjct: 123 EAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182
Query: 427 VKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
++ K+ ++L TH M L D + + G +
Sbjct: 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
Length = 254 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 47/192 (24%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
+ L +++P + G +G+GK+T ++ + +Y S
Sbjct: 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVN------------------------EGLYAS 45
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
L R L+F +L+ L ++ L + L ++
Sbjct: 46 GKARLISFL---PKFSRNKLIFIDQLQFL--------IDVGLGYLTL------GQKLSTL 88
Query: 386 SGGMKRRLSVAISLIGNPK-VVY-MDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHS 442
SGG +R+ +A L P ++ +DEPSTGL N L V+K G +IL H+
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148
Query: 443 ---MEEAEALCD 451
+ A+ + D
Sbjct: 149 LDVLSSADWIID 160
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 32/248 (12%)
Query: 227 TQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 285
+ + V LLL S I ++ +G+ E A+ + L + G+ ++G
Sbjct: 320 LSDADNV--LLLAHDKSVDSIELKDVHMNPKAPEGS-EGFALGPIDLRIAQGDIVFIVGE 376
Query: 286 NGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345
NG GK+T + G+ G + G + D Y L+ + HL
Sbjct: 377 NGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD---------LFSAIFADFHL 427
Query: 346 LFYGRL--KNLKGPALTQAVEESLKSVNLFH------GGVADKQAGKYSGGMKRRLSVAI 397
+ L + A ++ L+ + + GG + A G ++RL++
Sbjct: 428 --FDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST--GQQKRLALIC 483
Query: 398 SLIGNPKVVYMDEPSTGLDPASR----NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 453
+ + + ++ DE + DPA + L +KR QG+ II+ +H + E L D++
Sbjct: 484 AWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR--QGKTIIIISHDDQYFE-LADQI 540
Query: 454 GIFVDGSL 461
G +
Sbjct: 541 IKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 52/189 (27%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
+A+ +NL K + L+L L +GE ++G NG GKTT + ++G
Sbjct: 318 NALEVENLTKGFDNG------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP 371
Query: 304 TSGTAYVQGLDIRTDMDRIYTSMGVCPQ-------EDL-------LWETLTGREHLL--F 347
SGT V+ + ++G Q DL W E +
Sbjct: 372 DSGT--VKWSE--------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGT 421
Query: 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 407
GRL LF K SGG K R+ ++ P V+
Sbjct: 422 LGRL--------------------LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461
Query: 408 MDEPSTGLD 416
MDEP+ +D
Sbjct: 462 MDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 51/236 (21%)
Query: 227 TQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPN 286
+ER + LEPG I + Y D E+ ++ ++L +P G ++G
Sbjct: 597 AEERVLLPNPPLEPGLPAISIKNG----YFSWDSKAERPTLSNINLDVPVGSLVAIVGST 652
Query: 287 GAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346
G GKT+ IS M+G S + V I ++ PQ ++ T R+++L
Sbjct: 653 GEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIFNA-TVRDNIL 700
Query: 347 F--------YGR----------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388
F Y R L L G LT+ E + VN+ SGG
Sbjct: 701 FGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGE---RGVNI-------------SGG 744
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDP-ASRNNLWNVVKRAKQGRAIILTTHSM 443
K+R+S+A ++ N V D+P + LD R +K +G+ +L T+ +
Sbjct: 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800
|
Length = 1622 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 41/211 (19%)
Query: 267 VNGLSL-ALP---SGECFGMLGPNGAGKTTFISMMIG-----------------ITRTTS 305
N L LP G+ G++GPNG GK+T + ++ G I
Sbjct: 12 PNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFR 71
Query: 306 GTA---YVQGLDIRTDMDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQ 361
G+ Y L + D+ I V PQ DL+ + + G+ L LK
Sbjct: 72 GSELQNYFTKL-LEGDVKVI-----VKPQYVDLIPKAVKGKVGEL-------LKKKDERG 118
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
++E + + L H V D+ + SGG +R+++A +L + + DEPS+ LD R
Sbjct: 119 KLDELVDQLELRH--VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 422 NLWNVVKR-AKQGRAIILTTHSMEEAEALCD 451
N +++ A+ +++ H + + L D
Sbjct: 177 NAARLIRELAEDDNYVLVVEHDLAVLDYLSD 207
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 45/231 (19%), Positives = 105/231 (45%), Gaps = 24/231 (10%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR----TDMDRI 322
++GLS + E G++G GAGK++ ++ + I G + D+ TD+ R+
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFY------GRLKNLKGPALTQAVEESLKSVN--LFH 374
+ + PQ +L+ T R ++ + + L+ + ++ + ++ +
Sbjct: 1312 ---LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSE 1367
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
GG +S G ++ LS+A +L+ K++ +DE + +D + + + ++ +
Sbjct: 1368 GG------ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTS 485
+++ H + CD++ + G + +P+EL +R ++ F M S
Sbjct: 1422 TMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDTSAF-FRMVHS 1470
|
Length = 1495 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 25/109 (22%)
Query: 386 SGGMKRRLSVA----ISLIGNPKVVY-MDEPSTGLDPASRNNLWNVVKRAK-QGRAIILT 439
SGG + R ++A LIG + Y +DEPS GL P + L NV+K+ + QG ++L
Sbjct: 478 SGGEQERTALAKHLGAELIG---ITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV 534
Query: 440 THSMEEAEALCDRL-------GIFVDGSLQCIGNPKE-------LKARY 474
H E+ +L DR+ GIF G + G+P+E L A+Y
Sbjct: 535 EHD-EQMISLADRIIDIGPGAGIF-GGEVLFNGSPREFLAKSDSLTAKY 581
|
Length = 1809 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 58/243 (23%)
Query: 258 RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKT-TFISMMIGITR--TTSGTAYVQGLD 314
R + VN +SL + +GE ++G +G+GK+ T +S++ R + Y G D
Sbjct: 16 RQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL----RLLPSPPVVYPSG-D 70
Query: 315 IRTDMDRIYTSMGVCPQEDLLW---ETLTG----REHLLFYGRLKNLKGPALTQAVEESL 367
IR E LL +TL G + ++F + +L P T +E+ L
Sbjct: 71 IRFH------------GESLLHASEQTLRGVRGNKIAMIFQEPMVSLN-PLHT--LEKQL 115
Query: 368 KSVNLFHGG----------------VADKQAGK--------YSGGMKRRLSVAISLIGNP 403
V H G V +QA K SGG ++R+ +A++L+ P
Sbjct: 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP 175
Query: 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+++ DEP+T LD + + + +++ +Q ++ TH++ L DR+ + +G
Sbjct: 176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG-- 233
Query: 462 QCI 464
+C+
Sbjct: 234 RCV 236
|
Length = 529 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 28/232 (12%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDI------ 315
+ + LSL + G +LG NGAGK+T + + G A V G D+
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG-DVTLNGEP 72
Query: 316 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
D R+ V PQ + RE ++ GR + + + + L
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAFSARE-IVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 374 HGGVADKQAGK----YSGGMKRRLSVAISL---------IGNPKVVYMDEPSTGLDPASR 420
G A G+ SGG R+ A L P+ + +DEP+ LD A +
Sbjct: 132 LAG-ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 421 NNLWNVVKR-AKQGRAIILT-THSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ L + V+R A+ +L H A DR+ + DG++ G P ++
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
Length = 272 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR-------NNLWNVVKRAKQGR 434
A K SGG K+R+S+A ++I NPK++ +DE ++ LD S NNL + + R
Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL-----KGNENR 631
Query: 435 AIILTTHSM 443
I+ H +
Sbjct: 632 ITIIIAHRL 640
|
Length = 1466 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 51/153 (33%)
Query: 282 MLGPNGAGKTTFISMMIGITRTTSGTAY--------------VQGLDIRTD----MDRIY 323
M+GPNG GK+T + ++ G + +SGT + V GLD+ ++ M R +
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCF 599
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
GV P++ L R HL +G NL +L+ +
Sbjct: 600 P--GV-PEQKL-------RAHLGSFGVTGNL-----------ALQPMYTL---------- 628
Query: 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
SGG K R++ A P ++ +DEPS LD
Sbjct: 629 --SGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 44/203 (21%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMD-RIY 323
+ GL+L++ GE ++GPNG+GK+T ++ G + G +G I D++
Sbjct: 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI-LDLEPEER 81
Query: 324 TSMGV------------CPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEES 366
+G+ D L L + + K P L + + E
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFL--------RLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 367 LKSVNL----FHGGVADKQAGKYSGGMKRR---LSVAISLIGNPKVVYMDEPSTGLDPAS 419
LK V + V + +SGG K+R L +A+ + ++ +DE +GLD +
Sbjct: 134 LKLVGMDPSFLSRNVNE----GFSGGEKKRNEILQMALL---DSELAILDETDSGLDIDA 186
Query: 420 RNNLWNVVKR-AKQGRAIILTTH 441
+ + + +IIL TH
Sbjct: 187 LKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 38/168 (22%)
Query: 262 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDI----- 315
K V S + G+ ++GPNG GKTT + +M+G + SG + L++
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQ 389
Query: 316 -RTDMDRIYTSMGVCPQEDLLWE-----TLTGRE-HLLFYGRLKNLKGPALTQAVEESLK 368
R ++D T M D L E + GR H+L Y L++
Sbjct: 390 HRAELDPEKTVM------DNLAEGKQEVMVNGRPRHVLGY--LQDF-------------- 427
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
LFH A SGG + RL +A + ++ +DEP+ LD
Sbjct: 428 ---LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 34/221 (15%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLD------- 314
AV+ +S+ L GE G++G +G+GK+ + G+ R T+ +D
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81
Query: 315 -----IRTDMDRIYTSMGVC--PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ ++ I+ C P E + + + + GR G +A+E
Sbjct: 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIE--- 138
Query: 368 KSVNLFHG-GVADKQAGKYS------GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
L H G+ D + S G +++ +AI+L P+++ DEP+ ++P ++
Sbjct: 139 ----LLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194
Query: 421 NNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDG 459
++ ++ R Q I+L +H ++ D++ + G
Sbjct: 195 AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235
|
Length = 330 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 44/216 (20%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMI-----GITRTT-----------SGTAYV 310
+ S+ L G +G++G NG GKTTF+ M GI + T +
Sbjct: 193 IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252
Query: 311 QGLDIRTDMDRIY----TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
Q + + TD++R + V Q +L +ET TG+ + A++Q +EE
Sbjct: 253 QCV-LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKD---GVDKDAVSQRLEEI 308
Query: 367 LKSVNLFHGGVADKQAG------------------KYSGGMKRRLSVAISLIGNPKVVYM 408
K + L A+ +A +SGG + R+++A +L P ++ +
Sbjct: 309 YKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 409 DEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444
DEP+ LD + LW K + I+ +H+ E
Sbjct: 369 DEPTNHLDLHAV--LWLETYLLKWPKTFIVVSHARE 402
|
Length = 718 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----VQGLDIRTDMDR 321
++ +++ +P+G+ ++G G GK++ + ++G +T G + R
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-- 379
S+ Q+ L T E++ F + A+T A L G +
Sbjct: 77 NRYSVAYAAQKPWLLNA-TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN--VVKRAKQG-RAI 436
++ SGG ++R+ VA +L N +V++D+P + LD ++L ++K + R +
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL 195
Query: 437 ILTTHSME 444
+L TH ++
Sbjct: 196 VLVTHKLQ 203
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 386 SGGMKRRLSVAISLIG---NPKVVY-MDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTT 440
SGG K ++A+ L P+ +Y +DE GLDP L + +G +I+ T
Sbjct: 79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138
Query: 441 H 441
H
Sbjct: 139 H 139
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 246 IISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
I N+ KI+ P E A++ +S+ + GE ++G G+GKTTFI + +
Sbjct: 3 IKVKNIVKIF--NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60
Query: 305 SGT 307
+GT
Sbjct: 61 TGT 63
|
Length = 305 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIIL 438
Q SGG +R+++A +L+ N DEPS LD R N ++R + + ++
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
Query: 439 TTHSMEEAEALCDRLGIF 456
H + + L DR+ +F
Sbjct: 128 VEHDLAVLDYLSDRIHVF 145
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRTTSG 306
GE G++GPNG GKTT + ++ G
Sbjct: 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGD 54
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 45/204 (22%), Positives = 65/204 (31%), Gaps = 78/204 (38%)
Query: 284 GPNGAGKTTFI------------------SMMIGITRTTSGTAYVQGLDIRTDMDRIYT- 324
G NGAGKTT I + + R A V+ L + YT
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVK-LAFENANGKKYTI 87
Query: 325 --SMGV------CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
S+ + C Q + W L R GR
Sbjct: 88 TRSLAILENVIFCHQGESNWPLLDMR------GRC------------------------- 116
Query: 377 VADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNN-LWNVVKR 429
SGG K RL++A + N ++ +DEP+T LD + L +++
Sbjct: 117 ---------SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE 167
Query: 430 AKQ--GRAIILTTHSMEEAEALCD 451
K +I+ TH EE D
Sbjct: 168 RKSQKNFQLIVITHD-EELVDAAD 190
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-------IRTDMDRIYTSMGVC 329
GE G++GPNG GKTTF ++ G+ + G + L I+ D D V
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYD-----GTV- 417
Query: 330 PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389
EDLL ++T +Y E +K + L + DK SGG
Sbjct: 418 --EDLL-RSITDDLGSSYYK--------------SEIIKPLQLER--LLDKNVKDLSGGE 458
Query: 390 KRRLSVAISLIGNPKVVYMDEPSTGLD 416
+R+++A L + + +DEPS LD
Sbjct: 459 LQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLD------- 314
AV+ +S+ L GE G++G +G+GK+ + G+T R T+ +D
Sbjct: 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81
Query: 315 -----IRTDMDRIYTSMGVC--PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ ++ I+ C P E + + + + GR G +A+E
Sbjct: 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIE--- 138
Query: 368 KSVNLFHG-GVADKQAGKYS------GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
L H G+ D + S G +++ +AI+L P+++ DEP+ ++P ++
Sbjct: 139 ----LLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ 194
Query: 421 NNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++ ++ R Q I+L +H ++ D++ + G KEL
Sbjct: 195 AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
|
Length = 330 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 379 DKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK--RAKQ 432
D G Y SGG K+R+++A +L+ PK++ +DE ++ LD S + + + K
Sbjct: 1349 DTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKA 1408
Query: 433 GRAIILTTH---SMEEAEALC-----DRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ II H S++ ++ + DR G FV Q G +EL + G Y
Sbjct: 1409 DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV----QAHGTHEELLSVQDGVY 1458
|
Length = 1466 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHS 442
SGG ++RL+ A L+ PK V++DE ++ LD S + L+ ++K + G +I H
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--ELGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV--KRAKQGRAIILTTHSM 443
SGGM +R+ +A+++ PK++ DEP+T LD + + ++ + K+ A++L TH +
Sbjct: 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL 214
|
Length = 326 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 46/203 (22%)
Query: 267 VNGLSL-ALPS---GECFGMLGPNGAGKTTFISMMIGITRTT-----------------S 305
VNG L LP G+ G+LGPNG GKTT + ++ G
Sbjct: 85 VNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFR 144
Query: 306 GTA---YVQGL---DIRTDMDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPA 358
GT Y + L +I+ PQ DL+ + G+ L LK
Sbjct: 145 GTELQNYFKKLYNGEIKV---------VHKPQYVDLIPKVFKGK-----VREL--LKKVD 188
Query: 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
++E ++ + L + + D+ + SGG +R+++A +L+ + + DEP++ LD
Sbjct: 189 ERGKLDEVVERLGLEN--ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246
Query: 419 SRNNLWNVVKRAKQGRAIILTTH 441
R N+ +++ +G+ +++ H
Sbjct: 247 QRLNVARLIRELAEGKYVLVVEH 269
|
Length = 590 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.98 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.98 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.95 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.95 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.95 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.95 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.95 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.95 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.94 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.92 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.91 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.91 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.89 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.88 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.86 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.86 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.86 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.86 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.85 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.84 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.83 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.82 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.8 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.8 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.8 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.8 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.79 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.78 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.78 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.78 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.76 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.73 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.7 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.7 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.65 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.63 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.57 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.55 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.55 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.52 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.52 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.51 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.49 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.4 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.4 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.4 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.39 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.39 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.36 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.36 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.35 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.34 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.33 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.33 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.27 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.26 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.22 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.21 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.21 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.19 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.19 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.15 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.15 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.15 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.12 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.12 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.05 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.0 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.98 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.93 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.91 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.9 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.89 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.88 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.84 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.8 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.8 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.8 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.8 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.78 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.75 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.65 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.62 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.59 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.55 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.55 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.54 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.53 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.5 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.5 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.5 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.5 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.49 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.48 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.47 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.46 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.42 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.41 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.35 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.3 | |
| PF12698 | 344 | ABC2_membrane_3: ABC-2 family transporter protein; | 98.29 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.28 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.28 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.28 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.28 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.27 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.27 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.24 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.24 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.22 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.21 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.21 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.2 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.19 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.16 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.15 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.13 |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-92 Score=849.60 Aligned_cols=542 Identities=29% Similarity=0.493 Sum_probs=440.7
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 008362 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTAS 80 (568)
Q Consensus 1 ~m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~ 80 (568)
+||||||++++||++||+..+++.++.+++++++ +....+|+.+++.++|+++++|++++|++||++|+||+|++.|+
T Consensus 685 ~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~i--l~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~ 762 (2272)
T TIGR01257 685 TLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAA 762 (2272)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 4999999999999999988776554433332222 22346789999999999999999999999999999999999999
Q ss_pred HHHHhHHhhhhHHHHHHHHhhccCCCcchhhhhhhcccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCC-----cc
Q 008362 81 VIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDS-----EN 155 (568)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-----~~ 155 (568)
+++.+++|+..++. .+.....+ ..+...+.+++++|+.+++.|+..++.++..+ .|++|+++.++ ..
T Consensus 763 ~~~~li~f~~~lp~--~~~~~~~~-~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~-----~G~~w~n~~~~~~~~d~~ 834 (2272)
T TIGR01257 763 ACSGVIYFTLYLPH--ILCFAWQD-RMTADLKTAVSLLSPVAFGFGTEYLVRFEEQG-----LGLQWSNIGNSPLEGDEF 834 (2272)
T ss_pred HHHHHHHHHHHHHH--HHHhhccc-ccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhC-----CCcccccccccccCCCCc
Confidence 99999988866543 22222222 23333445678999999999999998876554 48999998643 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCccccchhccccccCCCCC--CCCCC---CCcccccccCCCchhHH
Q 008362 156 GMKEVLIIMFVEWLLLLGIAYYVDKILSSGGA-KGPLYFLQNFKKKSRSSFRK--PSLGR---QDSKVFVSMEKPDVTQE 229 (568)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~l~~yie~v~~~~~g-~~p~~f~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~e 229 (568)
+++.+++||++|+++|++|+||+|+|+|++|| ++||||+. .+++|..... ..... ..+....+.++++..+.
T Consensus 835 s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~--~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (2272)
T TIGR01257 835 SFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLL--QESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEG 912 (2272)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCccccc--chhhhcCCccccccccccccccccccccccccccccc
Confidence 56788999999999999999999999999999 99999873 2222210000 00000 00000000111110000
Q ss_pred --HHHHhhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 230 --RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 230 --~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
....++ ..+.....|+++||+|.|++. ++.||+|+||++++||++||+||||||||||+|+|+|+.+|++|+
T Consensus 913 ~~~~~~E~--~~~~~~~~L~I~nLsK~y~~~----~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~ 986 (2272)
T TIGR01257 913 INDSFFER--ELPGLVPGVCVKNLVKIFEPS----GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGT 986 (2272)
T ss_pred cccccccc--ccCCCCceEEEEeEEEEecCC----CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceE
Confidence 000111 011234579999999999631 357999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 308 i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
|+++|+++.....++|+.+|||||++.+++.+||+||+.++++++|.+.++.+++++++++.+||. +++++++++|||
T Consensus 987 I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSG 1064 (2272)
T TIGR01257 987 VLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH--HKRNEEAQDLSG 1064 (2272)
T ss_pred EEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCH
Confidence 999999997666677889999999999999999999999999988876666677899999999997 478999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||||+||+||+++|+++||||||+||||.+|+.+|++|++.++|+|||++||+|++++.+||||++|++|+++|.|++
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEeCCC---------------------------------------cHHHHHHHHHhcCCCceeEEE
Q 008362 468 KELKARYGGSYVFTMTTSAD---------------------------------------HEEEVESMAKRLSPGANKIYQ 508 (568)
Q Consensus 468 ~~l~~~~~~~~~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~ 508 (568)
++||++||.||.+++..+.. ...++.++++++.|+++....
T Consensus 1145 ~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~ 1224 (2272)
T TIGR01257 1145 LFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVEC 1224 (2272)
T ss_pred HHHHHhcCCcEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEec
Confidence 99999999999999864320 234678889999999999999
Q ss_pred ecceEEEEecCCcC---cHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhcccc
Q 008362 509 ISGTQKFELPKQEV---RVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQ 562 (568)
Q Consensus 509 ~~~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~~ 562 (568)
.+++.+|.+|.+.. .++.+|+.||+.+++++|.+|++++|||||||++++++.+
T Consensus 1225 ~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257 1225 IGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred cCCEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhcc
Confidence 99999999998753 5899999999999999999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-81 Score=756.38 Aligned_cols=526 Identities=31% Similarity=0.523 Sum_probs=422.1
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeec-cchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 008362 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL-NSYGIQFVFYIIYINLQIALAFLVAALFSNVKTAS 80 (568)
Q Consensus 2 m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~ 80 (568)
..++|++..+||+++|+||++++++.+++++++..+++..-|.. .+++.+++++++||+|.|+++|++|++|+++.+|.
T Consensus 1713 Q~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~ 1792 (2272)
T TIGR01257 1713 QFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAY 1792 (2272)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH
Confidence 35899999999999999999998887777665555565544443 45677888999999999999999999999999998
Q ss_pred HHHHhHHhhhhHHHH---HHHHhhccCCC---cchhhhhhhcccchhHHHHHHHHHHhhhhc-------cccCCCCCCcc
Q 008362 81 VIGYICVFGTGLLGA---FLLQSFVEDPS---FPRRWITAMELYPGFALYRGLYEFGTYSFR-------GHSMGTDGMSW 147 (568)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~-------~~~~~~~~~~w 147 (568)
+...++.+..|++.+ +++..+..+.. ....+..++.++|.||++.|+..++..... +.....+...|
T Consensus 1793 ~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1872 (2272)
T TIGR01257 1793 VALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSANPFQW 1872 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHHhhcccccCCccch
Confidence 766655554444322 22222211111 122344456789999999999888764321 11111123345
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhccccccCCCCCCCCCCCCcccccccCCCchh
Q 008362 148 ADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVT 227 (568)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~yie~v~~~~~g~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (568)
+. .+..+++|++++++|+++++++|+-.. .+.+.+. +.. .....+|+||.
T Consensus 1873 ~~-------~g~~ll~m~~~~iv~flLl~~ie~~~~----------~~~~~~~-------~~~------~~~~~eD~DV~ 1922 (2272)
T TIGR01257 1873 DL-------IGKNLVAMAVEGVVYFLLTLLIQHHFF----------LSRWIAE-------PAK------EPIFDEDDDVA 1922 (2272)
T ss_pred hh-------ccHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhhccc-------cCc------CcCCCchhHHH
Confidence 43 234688999999999999999996321 0000000 000 01124788999
Q ss_pred HHHHHHhhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 228 QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
+|++++... .....+|+++||+|+|+++ ++.||+|+||+|++|||+||+||||||||||+|+|+|+++|++|+
T Consensus 1923 ~Er~rV~~~---~~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~ 1995 (2272)
T TIGR01257 1923 EERQRIISG---GNKTDILRLNELTKVYSGT----SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995 (2272)
T ss_pred HHHHHHhcc---CCCCceEEEEEEEEEECCC----CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 999998642 2234589999999999741 257999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 308 i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
|+++|+++.....+.|++||||||++.+++.+|++||+.++++++|.+.++.+++++++++.++|. +++++++++|||
T Consensus 1996 I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~--~~~dk~~~~LSG 2073 (2272)
T TIGR01257 1996 ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS--LYADRLAGTYSG 2073 (2272)
T ss_pred EEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHhcCChhhCCH
Confidence 999999997655667889999999999999999999999999998887666677889999999996 488999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
||||||++|+||+++|++++|||||+||||.+|+.+|++|++. ++|+|||+|||+|+|++++|||+++|++|+++|.|+
T Consensus 2074 GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEeCCCcH------HHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCce
Q 008362 467 PKELKARYGGSYVFTMTTSADHE------EEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540 (568)
Q Consensus 467 ~~~l~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i 540 (568)
++++|++|+.+|.++++.+.... +.+.++++..+|++...+.+.+...|.+|.. .++++|+.+++.+.+++|
T Consensus 2154 ~q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~~e~~~~~l~~~i~~~--~~~~if~~L~~~k~~l~I 2231 (2272)
T TIGR01257 2154 IQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSS--SLARIFQLLISHKDSLLI 2231 (2272)
T ss_pred HHHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHHhhcCccceeeccccceEEEEeCcc--cHHHHHHHHHhcCCCCCe
Confidence 99999999999999887643221 1344556677898876666667788898864 689999999988888999
Q ss_pred eEEEeccCCHHHHHHHhhcccccccCCC
Q 008362 541 FAWGLADTTLEDVFIKVARHAQAFEDLP 568 (568)
Q Consensus 541 ~~~~~~~~tLEdvFl~~~~~~~~~~~~~ 568 (568)
.+|+++++||||||++++++++...++|
T Consensus 2232 ~dysvsqtSLE~VFl~l~~~q~~~~~~~ 2259 (2272)
T TIGR01257 2232 EEYSVTQTTLDQVFVNFAKQQTETYDLP 2259 (2272)
T ss_pred EEEEcCCCCHHHHHHHHhccccccCCCC
Confidence 9999999999999999999998877775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=737.28 Aligned_cols=537 Identities=41% Similarity=0.653 Sum_probs=432.4
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 008362 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASV 81 (568)
Q Consensus 2 m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~~ 81 (568)
|+|+|+++++||++++.||++.+++.++++.+++.+++ ++..++..++++++++|+.+.+++.|++|++|+++.+|++
T Consensus 331 ~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v 408 (885)
T KOG0059|consen 331 QLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASV 408 (885)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcee
Confidence 78999999999999999999999998888888877666 6667788899999999999999999999999999999998
Q ss_pred HHHhHHhhhhHHHHHHHHhhccCCCcchhhhhhhcccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCCc--cc---
Q 008362 82 IGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSE--NG--- 156 (568)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~--- 156 (568)
...++.+++++...+....+......+..+.....+.|.|.+..+.+.++............+..|..+.... ..
T Consensus 409 ~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (885)
T KOG0059|consen 409 ILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDESFYTLLL 488 (885)
T ss_pred ehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccccchhH
Confidence 8877777666543333333333334444455556677888777666666554443322223456676554320 00
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhccccccCCCCCCCCCCCCcccccccCCCchhHHH
Q 008362 157 ------MKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQER 230 (568)
Q Consensus 157 ------~~~~~~~~~~~~~l~~~l~~yie~v~~~~~g~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (568)
....+..+..++..+.++..++.. ++.++.+. . ............+|+.||..|+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~---------------~~~~~~~~---~-~~~~~~~~~~~~~e~~~v~~e~ 549 (885)
T KOG0059|consen 489 EWLLPLIGRRYLALVTEGVKDDLFFLLIFV---------------PFKRRMRA---L-TQNMLKGFEPVEVEKLDVARER 549 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhcccccc---c-cccccCCCcCcchhhHHHHHHH
Confidence 011122233333333333222211 11111110 0 0001111123346788899888
Q ss_pred HHHhhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 231 ERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
++++..........++.++||+|.|+++ ++ |++++|+.|++|||+|++|||||||||++|||+|..+||+|++++
T Consensus 550 ~~v~~~~~~~~~~~~~~~~~L~k~y~~~----~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i 624 (885)
T KOG0059|consen 550 NRVETLLFRSSYSSALVLNNLSKVYGGK----DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALI 624 (885)
T ss_pred HhhhhhhhcccccceEEEcceeeeecch----hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEE
Confidence 8777665554455789999999999863 12 999999999999999999999999999999999999999999999
Q ss_pred CCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 311 QGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 311 ~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
+|+++.. +..++++++|||||++.+++.||++||+.++++++|+++++.++.++++++.++|. ++++++++.||||
T Consensus 625 ~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~--~~~~~~~~~ySgG 702 (885)
T KOG0059|consen 625 KGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG--PYANKQVRTYSGG 702 (885)
T ss_pred ecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh--hhhccchhhCCCc
Confidence 9999976 44558999999999999999999999999999999999999999999999999997 4899999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||||++|.|++++|++++|||||+||||.+||.+|+++++.+ +|++||+|||+|+|||.+|||++||.+|+++|.|++
T Consensus 703 ~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 703 NKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred chhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 9999999999999999999999999999999999999999975 466999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEeCCCcH-HHHHHHHHhcCCCceeEEEecceEEEEecCCcC-cHHHHHHHHHHHhcCCceeEEEe
Q 008362 468 KELKARYGGSYVFTMTTSADHE-EEVESMAKRLSPGANKIYQISGTQKFELPKQEV-RVSDVFQAVEEAKSRFTVFAWGL 545 (568)
Q Consensus 468 ~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~l~~~~~~~~i~~~~~ 545 (568)
+++|++||.||.++++.+...+ +.+...+++.+|++...+++.....|++|.++. .++++|..+|..+..+++++|++
T Consensus 783 q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~i~dysl 862 (885)
T KOG0059|consen 783 QELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFPGAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFGIEDYSL 862 (885)
T ss_pred HHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCCCcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999876544 478888999999999999888889999996654 46799999999999999999999
Q ss_pred ccCCHHHHHHHhhcccccccC
Q 008362 546 ADTTLEDVFIKVARHAQAFED 566 (568)
Q Consensus 546 ~~~tLEdvFl~~~~~~~~~~~ 566 (568)
+++||||||++++++++..++
T Consensus 863 sq~tLe~VFi~~a~~q~~~~~ 883 (885)
T KOG0059|consen 863 SQTTLEDVFLILAKTQEDDNS 883 (885)
T ss_pred HHhhHHHHHHHHhcccccccc
Confidence 999999999999999886654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=445.79 Aligned_cols=221 Identities=30% Similarity=0.477 Sum_probs=208.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~ 322 (568)
+|+++||+|+||+ ..+|+|||++|++||+++|+||+|||||||+|||.||.+|++|+|.++|+++.. +..++
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 6999999999983 689999999999999999999999999999999999999999999999988743 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
|+++|+|||+.+|||.+||.||+.+.. ..++.++++.++++.++|+++||. +++|.+|.+|||||||||+|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~--~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch--hhhhhCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999999999854 467889999999999999999997 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|+++++|||||+|||+...++.+.++++ ++|.|.+++||+|..|.+.||||++|++|++++.|+|+++..+
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999996 5799999999999999999999999999999999999998764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=445.98 Aligned_cols=295 Identities=28% Similarity=0.508 Sum_probs=253.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
++++++|+|+|| ++.||+|+||++++|+++|++|||||||||++|||.|+++||+|+|.++|.+++. ..+.
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 589999999998 4789999999999999999999999999999999999999999999999998864 4567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+|||.|.+..|++.+||.|.|.|+++++|.+.++.+++++.+|+++++. ++.++++.+||.|++||+.+..|++++|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMT 483 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~ 483 (568)
++|||||+|||||.+.+.+.+.+.+++ +|.|||++||.|+.++++||++++|++|+.+.+|+.+++++.||.... .+.
T Consensus 151 LlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-~ie 229 (300)
T COG4152 151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-VIE 229 (300)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-EEe
Confidence 999999999999999999999999975 699999999999999999999999999999999999999999987632 233
Q ss_pred eCCCcHHHHHHHHHhcCCCceeEEEe-cceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 484 TSADHEEEVESMAKRLSPGANKIYQI-SGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
.+.. .+++ ...|+....... .+..... |.+...-.++|+.+. .+..|..|.+..+||+|+|+.-+...
T Consensus 230 s~~s-~eeL-----~~ipgi~~~~~~~~G~~~i~-ie~e~~a~~ifq~~a---~~g~i~~Fe~~~PsL~diFi~~~g~~ 298 (300)
T COG4152 230 SDLS-LEEL-----ANIPGILKITETKDGSWRIQ-IENETVAREIFQEVA---RDGYIQRFELQEPSLHDIFIEKVGGV 298 (300)
T ss_pred ccCc-hHHH-----hcCCCceeeeeccCCceEee-cccchHHHHHHHHHh---ccceeEEEeecCCCHHHHHHHHhccc
Confidence 2211 1112 224666555443 3333333 333334456777664 35679999999999999999876543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-60 Score=454.69 Aligned_cols=225 Identities=31% Similarity=0.477 Sum_probs=214.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
||+++|++|+|+ ++.|++|+||+|++||+++++||+||||||+||||.++++||+|+|+++|+++.+ +..++|
T Consensus 1 MI~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 589999999998 3679999999999999999999999999999999999999999999999999976 667899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
++|||+-|...|||++||.||+.+...++|+++++.+++++++|+.+||++.+++++++++|||||+||+.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998656999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+++++|||+++|||.+|.++.+.++++. + |+|||++||||+||..++|||++|++|+++..++|+++..+..
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999864 3 9999999999999999999999999999999999999977543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-58 Score=470.60 Aligned_cols=287 Identities=37% Similarity=0.670 Sum_probs=240.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++||+|+|++ ++.||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++..+..++++
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5889999999983 26799999999999999999999999999999999999999999999999999777778899
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+++.+|++|||.|++++++.+.+..+++++++++.++|.+ .+++++++||+|||||++||+||+++|+
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998766566778999999999974 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-ceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g-~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 482 (568)
++||||||+||||.+|+++|++|+++ ++| +||++|||.++|++.+||||++|++|++++.|+++++.+.++.......
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~~~ 236 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceEEE
Confidence 99999999999999999999999996 455 8999999999999999999999999999999999999888776544333
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhc
Q 008362 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVAR 559 (568)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~ 559 (568)
......... .. ..... .. . .....++...+.+ ....+..+...+.+||++|++..+
T Consensus 237 ~~~~~~~~~---~~----~~~~~---~~--------~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 292 (293)
T COG1131 237 EPERLELAE---LL----EGLKL---VK--------G-EEELAEILEALLE--EGVKIESIEVKEPSLEDVFLELTG 292 (293)
T ss_pred ecccccchh---hh----hcccc---cc--------c-chhHHHHHHHHHH--cCCceeeeecCCCCHHHHHHHHcc
Confidence 321111110 00 00000 00 0 1123444444443 345666889999999999998765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=469.18 Aligned_cols=298 Identities=35% Similarity=0.527 Sum_probs=239.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++||+|+|++ +.||+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.....+.
T Consensus 5 ~~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 5 VAPIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred CceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHH
Confidence 357999999999973 57999999999999999999999999999999999999999999999999997665667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
|+++|||||++.+++.+|++||+.+++++++.+..+..++++++++.++|. +..++++++||||||||++||+||+++
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999988888776666677889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~ 481 (568)
|+++||||||+||||.+|+.+|++|++++ +|+|||++||+++|++.+||||++|++|++++.|+++++.+.......+.
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~ 236 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEEE
Confidence 99999999999999999999999999874 59999999999999999999999999999999999999987654443444
Q ss_pred EEeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 482 MTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
+.... ......... +........+... .+... ...++...+.. ..++ .+...++||||+|++++++.
T Consensus 237 ~~~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~~---~~~~-~~~~~~~sLed~f~~~~~~~ 303 (306)
T PRK13537 237 IYGPD--PVALRDELA---PLAERTEISGETL--FCYVR--DPEPLHARLKG---RAGL-RYLHRPANLEDVFLRLTGRE 303 (306)
T ss_pred EEcCC--hHHHHHHhh---hccceeeeeCCEE--EEEeC--CHHHHHHHHHh---ccCc-eEEecCCCHHHHHHHHhCcc
Confidence 43321 111111111 1111111122222 22211 12445554432 1123 34457899999999998654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=439.69 Aligned_cols=224 Identities=33% Similarity=0.572 Sum_probs=215.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
|+++++++|+|+. ..+|++||||++++|||+||+|||||||||+||||++++.|++|.|+++|.|...++..+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5889999999984 35599999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+||+++....+|..||++|||.|++++.++.+.+.+.+++++.+.++|. +++|++++++|.||||||+|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~--~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL--EYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH--HHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 9999998899999999999999999999999999999999999999996 59999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+++|||||||||..+++.+.+.+++.+ +|++||++||.|+|++++|||++++++|+++..|+++.+..+.+
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 999999999999999999999999986 59999999999999999999999999999999999999988754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-58 Score=454.74 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=211.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 320 (568)
+|++++++|.|++. +++...||+||||+|++|||+|++|++|||||||+||+.+|.+||+|+|.++|+|+.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58999999999863 2234679999999999999999999999999999999999999999999999999854 456
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|++||++||++.|+...||.||+.|+..+.|.++++.++++.++|+.+||+ +++++++.+|||||||||+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcchhhHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999997 5899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.+|++|+.|||||+|||...+.+.++|+++. -|.||+++||.|+.+.++|||+++|++|++++.|+..++..+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 9999999999999999999999999999964 499999999999999999999999999999999999887654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-56 Score=457.01 Aligned_cols=298 Identities=29% Similarity=0.462 Sum_probs=243.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....++++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEECC------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 4889999999973 5799999999999999999999999999999999999999999999999998765566788
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|+.||+.+.+++++.+.++..++++++++.+||. +..++++++||||||||+++|+||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR--PEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988887766666677889999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEEEe
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTT 484 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~ 484 (568)
++||||||+||||.+++.+|+.++++++++|||++||++++++++|||+++|++|++++.|++++++++.+ ...+.+..
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~ 232 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEF 232 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEe
Confidence 99999999999999999999999998778999999999999999999999999999999999999987644 33344443
Q ss_pred CCCcHHHHHHHHHhcCCCceeEEE-ecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHh
Q 008362 485 SADHEEEVESMAKRLSPGANKIYQ-ISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKV 557 (568)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~ 557 (568)
....... .... .++...... .++...+..+.......++...+. ..+..+.++...++||||+|.++
T Consensus 233 ~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 233 EEQIDLQ---LFET-LEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQ--QKGLKLISLQQNEKNLEQVFREI 300 (301)
T ss_pred cCcchhH---HHhh-ccccceeeecCCCeEEEEEcCccchHHHHHHHHH--HCCCceEEEEeCCCCHHHHHHHh
Confidence 2211111 1111 112111111 122223333332223455655553 24678999999999999999876
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-56 Score=462.86 Aligned_cols=297 Identities=36% Similarity=0.541 Sum_probs=238.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++||+|+|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......+
T Consensus 40 ~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 40 VAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113 (340)
T ss_pred eeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence 47999999999973 579999999999999999999999999999999999999999999999999876556678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+++.+++.+..+..++++++++.++|. +..++++++||||||||++||+||+++|
T Consensus 114 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~--~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred ccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999888777765555667788999999997 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEE
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 482 (568)
+++||||||+||||.+|+.+|++|+++ ++|+|||++||++++++.+||||++|++|++++.|+++++++.......+.+
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~ 271 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEI 271 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEEE
Confidence 999999999999999999999999986 4699999999999999999999999999999999999999877654444444
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
.... .+....... +........+... .+... ...++...+.. ..+ .++.+..+||||+|++++++.
T Consensus 272 ~~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~~---~~~-~~~~~~~~sLEdvf~~~~~~~ 337 (340)
T PRK13536 272 YGGD--PHELSSLVK---PYARRIEVSGETL--FCYAP--DPEQVRVQLRG---RAG-LRLLQRPPNLEDVFLRLTGRE 337 (340)
T ss_pred EcCC--hHHHHHHhh---cccceEEecCCEE--EEEeC--CHHHHHHHHHh---ccC-ceEEEcCCCHHHHHHHHhccc
Confidence 3211 112222211 1111111112222 22111 12344444431 112 256788999999999998654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-56 Score=457.89 Aligned_cols=290 Identities=38% Similarity=0.606 Sum_probs=235.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.+||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999999987655567788999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
|+.+.+++++.+.++.+++++++++.++|. +..++++++||||||||++||+||+++|+++||||||+||||.+++.+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999988877766566667889999999996 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEEEeCCCc-HHHHHHHH----H
Q 008362 424 WNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADH-EEEVESMA----K 497 (568)
Q Consensus 424 ~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~----~ 497 (568)
+++|+++ ++|+|||++||++++++.+|||+++|++|++++.|++++++++++..+ +.+...... ........ .
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELG 242 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCce-EEEEecCchhhhhhhhHHHhhhh
Confidence 9999986 468999999999999999999999999999999999999988875442 333322111 11001111 0
Q ss_pred hcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhh
Q 008362 498 RLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVA 558 (568)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~ 558 (568)
...++........+...+.++.......++++.+. ..+..+.++++.++||||+|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 243 ETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAI--RNGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred hccccceeeeecCCeEEEEEcCchhHHHHHHHHHH--HCCCceEEEEcCCCCHHHHHHHHh
Confidence 11122211222233344455543333566666664 356789999999999999999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=444.83 Aligned_cols=297 Identities=34% Similarity=0.521 Sum_probs=237.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 36999999999973 569999999999999999999999999999999999999999999999999865545567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+++..++.+.++..++++++++.++|. +..++++++||||||||++||+||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999877666655555566788899999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEE
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 482 (568)
+++||||||+||||.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|++++.|+++++.+.....+...+
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 234 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEI 234 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEE
Confidence 999999999999999999999999986 4699999999999999999999999999999999999999876654444444
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
.... .+....... +........+... .+... ...++...+.. ....++....+||||+|++++++.
T Consensus 235 ~~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~~----~~~~~~~~~~~sLedif~~~~~~~ 300 (303)
T TIGR01288 235 YGGD--PDELRELIR---PYARRIEVSGETL--FCYAR--DPEQVRVQLRG----RTDLRLLQRPPNLEDVFLRLTGRE 300 (303)
T ss_pred EcCC--HHHHHHHhh---hccceeeeeCCEE--EEEeC--CHHHHHHHHhc----ccCceEEecCCCHHHHHHHHhccc
Confidence 3321 122222211 1111111122222 22111 22344444431 123367788999999999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=422.79 Aligned_cols=223 Identities=30% Similarity=0.545 Sum_probs=207.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----c
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 318 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~ 318 (568)
.+.|++++|+|+|| ++.+++||||+|++||+++++||+|+|||||+|+|.|+++|++|+|.++|+++.. .
T Consensus 6 ~~~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 45799999999998 4689999999999999999999999999999999999999999999999999854 3
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
..++|+++|++||+.+||..|||+||+.|+.+- ..++++..++.+..-|+.+||.. ..+++.|++|||||+||+++||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~-~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG-AAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCCh-hhhhhCchhhcchHHHHHHHHH
Confidence 346789999999999999999999999997654 35677888888999999999974 4489999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|++.||+++++||||+||||.+...+-++|+++++ |.|++++|||++++..+|||++++.+|+++..|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999754 9999999999999999999999999999999999999976
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=440.63 Aligned_cols=225 Identities=28% Similarity=0.458 Sum_probs=210.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..|+++||+|.||+ ..||+|+||+|++||+++|+||||||||||||+|+|+++||+|+|.++|++++.-. -.+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-P~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PEK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hhH
Confidence 36999999999984 22999999999999999999999999999999999999999999999999997632 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
|+||+|||+..|||.|||+||+.|..++++.++++.+++++++.+.++|++ +.++++.+|||||||||++||||+.+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~--lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh--HHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999974 899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCc
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 477 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~ 477 (568)
++++||||.|+||+..|..+...|+++. + |.|+|.+|||-.||..++|||++|++|++...|+|.++.++....
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~ 228 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANL 228 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccch
Confidence 9999999999999999999999999863 3 899999999999999999999999999999999999998765543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=443.30 Aligned_cols=222 Identities=32% Similarity=0.537 Sum_probs=206.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+.++++||+|.|+ +..||+|+||+|++||+++|+||||||||||||||+|+..|++|+|.++|+++..- ...+
T Consensus 4 ~~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~k 76 (352)
T COG3842 4 PALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEK 76 (352)
T ss_pred ceEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhh
Confidence 4799999999998 37899999999999999999999999999999999999999999999999999763 3346
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
|.||+|||+.+|||.|||+||+.|+.++++ .++++++++++++++.++|. +++++++.+|||||||||++||||+.+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~--~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE--GFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch--hhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 899999999999999999999999988655 34456889999999999997 499999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|++++||||.|+||..-|.++...++++ + .|.|.|++|||-+||..++|||++|++|++...|+|+++..+.
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999985 3 4999999999999999999999999999999999999986543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=404.28 Aligned_cols=222 Identities=32% Similarity=0.564 Sum_probs=204.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
..+.++||.|+|++ +++++++||+|++||++||+|||||||||++.|++|+.+|++|+|.++|.|++.. ..+
T Consensus 3 ~~L~a~~l~K~y~k------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYKK------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhCC------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 36889999999984 6799999999999999999999999999999999999999999999999999763 356
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.|..|||+||++..|..|||+||+.....++..+.+ +.+.+++++|+++++.+ .++++..+||||||||+.|||||
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h--lr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH--HhcCcccccccchHHHHHHHHHH
Confidence 778899999999999999999999998887764433 44556889999999985 89999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+.++||||++|+||.+...+.++++.++ +|..|++|-|+..|...+|||.+|+++|++.+.|+|+++.+.
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999999999975 699999999999999999999999999999999999998653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=412.68 Aligned_cols=204 Identities=28% Similarity=0.467 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..+++++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+.. -.
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36899999999984 679999999999999999999999999999999999999999999999998832 23
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
..+||+||++.|+|-+||+||+.+.....+.++++.+++++++|+.+||. ++.++++++||||||||++|||||+.+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~--~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA--GFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc--chhhcCccccChHHHHHHHHHHHHhcCC
Confidence 56899999999999999999999999998877788888999999999997 5999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
++++||||+++||+.+|..+.+.+.++ +.++||+++|||.+||-.++|||++|.++
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999885 45899999999999999999999999984
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=435.93 Aligned_cols=224 Identities=30% Similarity=0.461 Sum_probs=203.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+|+++||+|+|++.. ..+++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 489999999996321 125799999999999999999999999999999999999999999999999998642 23
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|++|||+||++.+++.+||+||+.+.....+.+.++.++++.++++.+||. ++.++++++||||||||++|||||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~--~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999877766666667778899999999997 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+||||.+++.++++|+++. + |+|||++||+|+++.++|||+++|++|++++.|+++++..
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999988754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=401.76 Aligned_cols=222 Identities=28% Similarity=0.471 Sum_probs=203.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~ 319 (568)
.+|+++||+|+|++ +++||+||||+|++||.++|+||+|||||||||+|.|+.+|++|+|.++|.++.. ..
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47999999999964 4789999999999999999999999999999999999999999999999998854 35
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHh--------hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYG--------RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~--------~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
+++|++|||++|+++|.+.+||.+|+..+. .+-|+..++.+..+-++|+++|+. +++.+++++|||||||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~--~~A~qra~~LSGGQQQ 154 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL--DKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH--HHHHHHhccCCcchhH
Confidence 677899999999999999999999998743 233566677788889999999997 4899999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||+|||||+.+|++++.|||+++|||.+.+.+++.|++. ++|.|||++.|+++.|.++||||+-|++|+++.+|++++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 999999999999999999999999999999999999985 469999999999999999999999999999999999988
Q ss_pred HHH
Q 008362 470 LKA 472 (568)
Q Consensus 470 l~~ 472 (568)
+.+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=414.83 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=198.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++||+..|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ..+++.
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 5899999999983 689999999999999999999999999999999999999999999999999975 556677
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+.+||+||.+.....+||+|-+.++..- .+...++.++.++++|+.+|+. +++++.+.+||||||||+.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHHHHHHH
Confidence 8999999999888899999999875321 1223455566899999999997 499999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+++|++++|||||+.||...+.+++++++++. +|+|||+++||++.|.++|||+++|++|++++.|+|+++
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999863 599999999999999999999999999999999999775
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=414.67 Aligned_cols=228 Identities=29% Similarity=0.486 Sum_probs=206.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe---eCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~---~i~~~~~~ 321 (568)
+|+++|++|.|+. ..|++|||++|+.||.+||+||||||||||||+|+|++.|++|+|.++|+ |.+. ...
T Consensus 2 ~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 5889999999984 67999999999999999999999999999999999999999999999999 6544 122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
-.++||+++|+..||+.|||.||+.|+.+.+.. +..+++.+++++|+.++|+ ...++++.+||||||||+++||||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHHHHHHHHHh
Confidence 236899999999999999999999998877632 3456788999999999997 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCc
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 477 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~ 477 (568)
+.+|++|+||||+++||...|+++...|++. .+ |.|.+++|||.+|+.++||||++|++|+|...|+++++.......
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999999985 34 999999999999999999999999999999999999998776665
Q ss_pred EEEE
Q 008362 478 YVFT 481 (568)
Q Consensus 478 ~~l~ 481 (568)
+...
T Consensus 233 fV~~ 236 (345)
T COG1118 233 FVAR 236 (345)
T ss_pred ceec
Confidence 5443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=394.85 Aligned_cols=223 Identities=27% Similarity=0.441 Sum_probs=208.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----eEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-----GTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-----G~i~i~G~~i~~- 317 (568)
+.++++||++.|| ++.||+|||++|++++++||+||+||||||+||++..+....+ |+|.++|+++..
T Consensus 6 ~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 5799999999998 4789999999999999999999999999999999999877654 999999999965
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
+..++|+++|++||.|.-|| +|++||+.++.+++|...++.++.+++.|+...|.+ ++..++.+..|||||||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 46789999999999999999 899999999999999877888899999999999875 2456788889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||||+.+|+||+||||||+|||.+..++-++|.+++++-||+++||+|..|.+++|+.+++..|++++.|+.+++..+
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=432.79 Aligned_cols=222 Identities=26% Similarity=0.451 Sum_probs=204.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 4 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQ 76 (351)
T ss_pred CcEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH
Confidence 357999999999973 56999999999999999999999999999999999999999999999999986432 34
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++++|||||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999987777766677788999999999997 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|++++|||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999986 33 89999999999999999999999999999999999998654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=432.30 Aligned_cols=221 Identities=30% Similarity=0.503 Sum_probs=204.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+++++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..... .+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HH
Confidence 46999999999973 569999999999999999999999999999999999999999999999999864332 36
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+||.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999987766666667778999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++++||||++|||+..|+.+++.|+++ ++ |.|+|++|||++|+..+||||++|++|++++.|+++++.++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999986 43 89999999999999999999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=386.99 Aligned_cols=215 Identities=27% Similarity=0.432 Sum_probs=203.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 320 (568)
+|+++||+|+|++ .+.||+||||+|++||++-|.||+||||||++|+|.+..+||+|+|.++|+|+.+ +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5889999999985 3679999999999999999999999999999999999999999999999999964 345
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
-+|++||+|||+.-|.+++||+||+.|..++.|.+++++++++.++|+.+||. ++++..+.+||||||||++||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~--~k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK--HKARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc--hhhhcCccccCchHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999999997 4899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
.+|++||.||||.+|||....++++++.+.. .|.||+++|||.+.+..+-.|++.+++|+++.+..
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999974 69999999999999999999999999999987654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=432.44 Aligned_cols=221 Identities=24% Similarity=0.460 Sum_probs=202.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHC
Confidence 5899999999932 257999999999999999999999999999999999999999999999999986432 2347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.|||+||++.+|+.+||+||+.+..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999987766666666778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+++|||||++||+..|+.+++.|+++ ++ |+|+|++|||++|+..+|||+++|++|+++..|+++++.++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 89999999999999999999999999999999999998654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=399.48 Aligned_cols=213 Identities=28% Similarity=0.461 Sum_probs=190.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++||+|.|+... ....||+++||+|++||+++|+||+||||||||++|.|+.+||+|+|.++|+|+... ..
T Consensus 1 ~i~~~~v~k~y~~~~--~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCC--cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 367999999997532 136799999999999999999999999999999999999999999999999998642 23
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.. |++|||+||+..|.|++||.||+.+...+.+.+..+.+++++++++.+||.+ ...+++|.+|||||||||+|||||
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~-~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-hhccCCchhcCHHHHHHHHHHHHH
Confidence 33 4679999999999999999999999888888766566788999999999974 344489999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+.+|++|+.||||.+||+.+.++++++++++ + .|+|||++|||.+.+. .|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 9999999999999999999999999999986 3 4999999999998887 6999999999994
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=401.33 Aligned_cols=227 Identities=26% Similarity=0.448 Sum_probs=204.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
.+++++||++.|+++.. ..+||+||||+|.+||++||+|++|||||||.|+|+|+.+|++|+|.++|+++.. ..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 47999999999986421 2369999999999999999999999999999999999999999999999987643 2235
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++.+.++|||+ .|.|..||++.|.-..+.+|.+.. ++++.++|+.+||.+ +++++++.+|||||+||++|||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~-~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP-SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH-HHHhcCchhcChhHHHHHHHHHHh
Confidence 678899999997 689999999999988888776544 345999999999985 799999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+.+|++||||||||+||+..+.++|+++.++++ |.|+|++|||+..++.+||||++|++|++++.++.+++++...
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~ 234 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCc
Confidence 999999999999999999999999999998753 7799999999999999999999999999999999999987633
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=407.27 Aligned_cols=217 Identities=28% Similarity=0.498 Sum_probs=190.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++|+++.|++ .+||+||||++++|++++|+||||||||||+|+|.|+++|++|+|.++|+++..... +
T Consensus 3 ~~i~v~nl~v~y~~------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 47999999999974 269999999999999999999999999999999999999999999999988754322 4
Q ss_pred cceEEEcCCC---CCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQED---LLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.+|||+||.. .-|| +||+|-+.+....+ +...++.+++++++|+.+|+. +++|+++++|||||+||+.||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHHHH
Confidence 6799999964 3355 69999998853221 123344578999999999997 599999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||+.+|++++|||||+|+|+.++..+.++|++++ +|+||+++|||++.+.++||||+.| |+++.|.|++++..+
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999999975 5999999999999999999999888 578999999988643
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=430.84 Aligned_cols=221 Identities=27% Similarity=0.446 Sum_probs=203.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc--eEEEECCeeCCCcHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~--G~i~i~G~~i~~~~~~~ 322 (568)
.++++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.... ..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PH 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HH
Confidence 5899999999973 469999999999999999999999999999999999999999 99999999985432 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987776766667778899999999997 489999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|++++|||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999986 33 799999999999999999999999999999999999987653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=403.10 Aligned_cols=217 Identities=42% Similarity=0.697 Sum_probs=197.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.....+.+++
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999973 56999999999999999999999999999999999999999999999999886444456778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++...++..++++++++.+++. +..++++++||||||||++||+|++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655555567889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999985 44 89999999999999999999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=406.64 Aligned_cols=219 Identities=32% Similarity=0.576 Sum_probs=196.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 235
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|++||+.+..... +.+.++..+++.++++.+++. +..++++++||||||||++|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999998865432 334445567788999999996 4679999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999986 3 48999999999999999999999999999999999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=404.36 Aligned_cols=222 Identities=32% Similarity=0.546 Sum_probs=206.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--CcHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~~ 321 (568)
.+++++|++++|+++ +.+++|+|+++++||+++|+||||||||||+++++|+++|++|+|.++|.++. .....
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368999999999752 57999999999999999999999999999999999999999999999999986 45677
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+|+++||++|++ .++.. ||.|.+.|.....|.+.++.+++++++++.+++. +++++.+.+|||||||||+||.+|
T Consensus 77 ~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~--~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLE--ELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch--hhccCCccccCCcceeeHHhhHHH
Confidence 899999999997 55554 9999999999999999888999999999999997 479999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|++++||||||||||.+++++++++++++ + |+|||++|||++++..+|||+++|++|+++.+|+|+++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999974 4 68999999999999999999999999999999999888764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-52 Score=399.79 Aligned_cols=222 Identities=31% Similarity=0.463 Sum_probs=201.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
+.+++++|+|+||+ ..|++||||++++||++||+|||||||||++|+|+|.++|++|+|.++|+|+... .+.
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 46889999999985 6899999999999999999999999999999999999999999999999999753 344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC------------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN------------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~------------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
.|..|+--||...+|++|||.||+......+. ...++..+++.++|+.+||. +.+++++++||+||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~--~~a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG--ELADRPAGNLSYGQ 154 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc--hhhcchhhcCChhH
Confidence 56788889999999999999999998644221 12356778899999999997 48999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||.|||||+.+|++|+||||.+||.|....++.++|++++ .|.||+++.|||+.+..+||||++|+.|+++++|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 999999999999999999999999999999999999999975 369999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008362 468 KELKAR 473 (568)
Q Consensus 468 ~~l~~~ 473 (568)
+++.+.
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 998764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=399.04 Aligned_cols=219 Identities=53% Similarity=0.872 Sum_probs=198.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|.|++. .+++++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999731 156999999999999999999999999999999999999999999999999986544556778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++.+..+..++++++++.++|. +..++++.+||||||||++|||||+.+|++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666655445566788999999996 477899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999876679999999999999999999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=423.81 Aligned_cols=225 Identities=31% Similarity=0.492 Sum_probs=202.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+|+++||+|+|++.. .++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 488999999997311 135799999999999999999999999999999999999999999999999998642 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|+++||+||++.+++.+|++||+.+.....+.+.++.++++.++++.+||. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999877666665556667889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999986 33 89999999999999999999999999999999999998654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=426.43 Aligned_cols=222 Identities=28% Similarity=0.461 Sum_probs=203.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 346999999999973 56999999999999999999999999999999999999999999999999986432 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+|+.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987666666666677899999999997 489999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+++||||||+|||+..|+.+++.|+++ + .|+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999986 3 389999999999999999999999999999999999998654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=424.05 Aligned_cols=220 Identities=27% Similarity=0.452 Sum_probs=199.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHC
Confidence 4889999999973 56999999999999999999999999999999999999999999999999986422 3457
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
++||+||++.+|+.+|++||+.+..+.. +.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999876542 334455677899999999996 4889999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.+|+++||||||+|||+.+|+.+++.|+++. + |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999863 4 89999999999999999999999999999999999998654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=425.23 Aligned_cols=223 Identities=28% Similarity=0.452 Sum_probs=204.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++.... ..
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 457999999999973 56999999999999999999999999999999999999999999999999986432 34
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+|+.+||+||+.+..+.++.+.++.++++.++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999987766666667778899999999997 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|++++|||||+|||+..|+.+++.|+++ + .|.|+|++|||++|+..+|||+++|++|++++.|+++++..+.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999875 4 4899999999999999999999999999999999999987543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=397.04 Aligned_cols=217 Identities=34% Similarity=0.604 Sum_probs=195.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|.|+++. +..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 478999999997421 012699999999999999999999999999999999999999999999999998655556678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++++||||||||++||||++.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666655556667889999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+++|||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|++++.|
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999986 46899999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=405.77 Aligned_cols=234 Identities=28% Similarity=0.431 Sum_probs=213.2
Q ss_pred CeEEEEeEEEEcCCCCC------------------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 008362 244 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~------------------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~ 305 (568)
..|+++|++|.||++.. .+....++|+||+|++|||+.|+|-+|||||||+|++.++.+||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35899999999986411 123457899999999999999999999999999999999999999
Q ss_pred eEEEECCeeCCC-c---HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 008362 306 GTAYVQGLDIRT-D---MDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380 (568)
Q Consensus 306 G~i~i~G~~i~~-~---~~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 380 (568)
|+|.++|.|+.. + ..++ |+++++|||+..|+|..||.||..|+..++|.++++.++++.++|+.+||. ++.++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~--~~~~~ 160 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYADK 160 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch--hhhhc
Confidence 999999999964 2 2233 367999999999999999999999999999999999999999999999997 59999
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++++|||||||||.|||||+.+|+++++|||+|+|||--|.++.+.|.++. -++||+++|||++||.++.|||+||++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 999999999999999999999999999999999999999999999998863 389999999999999999999999999
Q ss_pred CEEEeecCHHHHHHhcCCcEE
Q 008362 459 GSLQCIGNPKELKARYGGSYV 479 (568)
Q Consensus 459 G~l~~~g~~~~l~~~~~~~~~ 479 (568)
|+++..|+|+|+..+....|+
T Consensus 241 G~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 241 GEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred CeEEEeCCHHHHHcCccHHHH
Confidence 999999999999877666664
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=396.10 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=188.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|++++|++. .+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24699999999999999999999999999999999999999999999999988531 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.+||+||++.+++.+|++||+.+.....+...++.++++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999876655544445567889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.+|+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999986 4589999999999999999999999999974
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=395.60 Aligned_cols=211 Identities=31% Similarity=0.506 Sum_probs=189.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhcc
Confidence 468999999963 56999999999999999999999999999999999999999999999999886422 24578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998865554444445566788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|+++ + +|+|||++||++++++.+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=424.35 Aligned_cols=219 Identities=27% Similarity=0.456 Sum_probs=200.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++||+|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHC
Confidence 5899999999973 56999999999999999999999999999999999999999999999999986422 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+|+.+||+||+.+....++.+.++.+++++++++.++|. +..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666655566677899999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||||+|||+.+++.+++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++..
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999986 43 8999999999999999999999999999999999998854
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=421.21 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=192.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh----hcceEEEcCCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI----YTSMGVCPQEDLLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~----r~~ig~~~Q~~~l~~~ 338 (568)
+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.. ..... |+++|||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 579999999999999999999999999999999999999999999999999864 33333 6789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
+||+||+.+.....+.+.++..+++.++++.+||. .+.++++.+||||||||++|||||+.+|+++||||||+||||.
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~--~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE--EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99999999987777776667778899999999996 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 419 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 419 ~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+++.+.+.+.++. .|+|||++|||++++..+||||++|++|+++..|+++++.++
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999863 489999999999999999999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=396.96 Aligned_cols=224 Identities=30% Similarity=0.481 Sum_probs=198.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H---H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 320 (568)
+|+++|+++.|+++. +.+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999997420 012799999999999999999999999999999999999999999999999998542 1 2
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.+||+||++.+++.+|++||+.+....++....+..+.+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998866555544445566789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999986 44 8999999999999999999999999999999999888743
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=396.34 Aligned_cols=218 Identities=33% Similarity=0.576 Sum_probs=195.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-Hhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~r 323 (568)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999973 5699999999999999999999999999999999999999999999999987542 22 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++.+++||||||||++|||||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT--HLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999865555544445556788999999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999986 45899999999999999999999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=398.70 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++||+|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccc
Confidence 4889999999973 56999999999999999999999999999999999999999999999999875422 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+||+||++.+++.+|++||+.+.....+. ..++..++++++++.++|. +..++++.+||||||||++|||||+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD--WLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 799999999999999999999886544332 2233456788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999986 3 38999999999999999999999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=407.38 Aligned_cols=226 Identities=31% Similarity=0.496 Sum_probs=198.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---HHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~ 321 (568)
.++++||+|.|++..+ ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4889999999974211 024699999999999999999999999999999999999999999999999998642 245
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++++||+||++ .++ ..|++||+.+.....+.++++..++++++++.+||...+..++++++||||||||++|||||
T Consensus 81 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 678999999986 344 47999999987666666666677789999999999521368999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999986 43 8999999999999999999999999999999999998754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=421.56 Aligned_cols=226 Identities=25% Similarity=0.427 Sum_probs=201.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++||+|.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 36999999999973 579999999999999999999999999999999999999999999999999865 44567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc--CC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--NL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++++||+||++.+++.+|++||+.+....+ .. ..++.+++++++++.+++. +..++++.+||||||||++||||
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHH
Confidence 788999999999999999999998753211 11 1344567889999999996 48899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH------HH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE------LK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~------l~ 471 (568)
|+++|+++||||||+|||+.++++++++|+++. +|+|||++||+++++.++|||+++|++|+++..|++++ +.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~ 233 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLR 233 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHH
Confidence 999999999999999999999999999999874 68999999999999999999999999999999999997 55
Q ss_pred HhcCCc
Q 008362 472 ARYGGS 477 (568)
Q Consensus 472 ~~~~~~ 477 (568)
+.|+..
T Consensus 234 ~~~~~~ 239 (402)
T PRK09536 234 AAFDAR 239 (402)
T ss_pred HHhCCc
Confidence 666543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=396.78 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=194.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH-hh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~-~r 323 (568)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999973 5699999999999999999999999999999999999999999999999988642 222 35
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL----------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~----------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
+.+||+||++.+++.+|++||+.+.....+. ...+..++++++++.+++. +..++++++||||||||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA--DLADRPAGELSYGQQRRL 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc--chhhCChhhCCHHHHHHH
Confidence 6799999999999999999999886544321 1234456788999999996 478999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999999864 68999999999999999999999999999999999988753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=395.05 Aligned_cols=221 Identities=30% Similarity=0.477 Sum_probs=198.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999988643334456
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.++|+||++.+++.+|++||+.+....++.+.++..+++.++++.+|+. +..++++.+||||||||++|||||+.+|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988999999998876665544445566788999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++||||||+|||+.+++.+++.|+++. +|+|||++||++++++. |||+++|++|++++.|+++++.+.+
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 999999999999999999999999863 48999999999999985 9999999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=421.33 Aligned_cols=228 Identities=25% Similarity=0.408 Sum_probs=201.6
Q ss_pred CeEEEEeEEEEcCCCCC------------------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 008362 244 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~------------------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~ 305 (568)
.+|+++||+|.||.... .+...+++|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 36888999998886321 012348999999999999999999999999999999999999999
Q ss_pred eEEEECCeeCCCc-HHH----hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 008362 306 GTAYVQGLDIRTD-MDR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380 (568)
Q Consensus 306 G~i~i~G~~i~~~-~~~----~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 380 (568)
|+|+++|+++... ... .++++||+||++.+++.+|++||+.+....++.+.++.++++.++++.+||. ++.++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~--~~~~~ 160 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE--NYAHS 160 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--hhhhc
Confidence 9999999998642 221 2357999999999999999999999887776666566667889999999996 47899
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++++||||||||++|||||+.+|+++||||||+||||.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999986 3 489999999999999999999999999
Q ss_pred CEEEeecCHHHHHHh
Q 008362 459 GSLQCIGNPKELKAR 473 (568)
Q Consensus 459 G~l~~~g~~~~l~~~ 473 (568)
|+++..|+++++...
T Consensus 241 G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 241 GEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEecCCHHHHHhC
Confidence 999999999988654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=390.23 Aligned_cols=211 Identities=37% Similarity=0.646 Sum_probs=191.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999963 46999999999999 99999999999999999999999999999999999886533556788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876665554445567789999999996 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998766799999999999999999999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=413.04 Aligned_cols=233 Identities=24% Similarity=0.357 Sum_probs=203.8
Q ss_pred CCeEEEEeEEEEcCCCCC-------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 243 SHAIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
.++|+++||+|.|+.+.+ .+.+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999974211 0135799999999999999999999999999999999999999999999999998
Q ss_pred CCc----HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 316 RTD----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 316 ~~~----~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
... ....|++++|+||++ .+++.+|+.||+.+..... +.+.++.++++.++++.++|.+ +..++++++|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHhcCCcccCCH
Confidence 542 234577899999997 6899999999998865443 3455666778899999999953 468999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
|||||++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999863 3899999999999999999999999999999999
Q ss_pred CHHHHHHhcCC
Q 008362 466 NPKELKARYGG 476 (568)
Q Consensus 466 ~~~~l~~~~~~ 476 (568)
+++++.+...+
T Consensus 245 ~~~~i~~~~~~ 255 (331)
T PRK15079 245 TYDEVYHNPLH 255 (331)
T ss_pred CHHHHHcCCCC
Confidence 99998765433
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=405.62 Aligned_cols=225 Identities=23% Similarity=0.378 Sum_probs=198.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
+|+++|+++.|++... ..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 1 mi~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 4889999999974210 11369999999999999999999999999999999999999999999999999842 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
...|+.+||+||++ .+++ .|+.||+.|.....+.+.++.++++.++++.++|.+ ++.++++.+||||||||++||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHH
Confidence 45678999999986 5666 599999998765556666667778999999999952 3679999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+++++++++ +|+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999864 59999999999999999999999999999999999999854
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=391.47 Aligned_cols=214 Identities=29% Similarity=0.455 Sum_probs=191.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++.. ..+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999997411 11579999999999999999999999999999999999999999999999998752 3567
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++++||||||||++|||||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS--GFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999876655554455567889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEE--CCEEEeecCH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNP 467 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~--~G~l~~~g~~ 467 (568)
+||||||+|||+.+++.++++|++. + +|+|||++||+++++..+|||+++|+ +|+++..++.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999986 4 48999999999999999999999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=396.35 Aligned_cols=221 Identities=28% Similarity=0.481 Sum_probs=197.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~-- 317 (568)
+++++||+|+|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999973 46999999999999999999999999999999999999998 9999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++ +|++||+.+....++. +.++..++++++++.+|+.+. +..++++++||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23456788999999999998 9999999986655542 334556778999999999510 257899999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987656999999999999999999999999999999999988754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=393.89 Aligned_cols=215 Identities=27% Similarity=0.472 Sum_probs=190.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceEEEECCeeCCCc--
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTD-- 318 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-----~p~~G~i~i~G~~i~~~-- 318 (568)
|+++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999973 46999999999999999999999999999999999999 99999999999987542
Q ss_pred -HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCCccccc--CCCCChhHHHHHH
Q 008362 319 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQ--AGKYSGGMKRRLS 394 (568)
Q Consensus 319 -~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~--~~~LSgG~kqrl~ 394 (568)
....++.+||+||++.++ .+|++||+.+.....+...+ +.+++++++++.+|+.+ ..+++ +.+||||||||++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HHhccCCcccCCHHHHHHHH
Confidence 345677899999999888 78999999886655543332 34567889999999963 55666 5999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|||||+.+|+++||||||+|||+.+++.++++|++.++.+|||++||+++++..+|||+++|++|++++.|++++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999987434999999999999999999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=389.78 Aligned_cols=211 Identities=28% Similarity=0.481 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccce
Confidence 468999999973 46999999999999999999999999999999999999999999999999885422 22467
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876655555555667888999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|++. + +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999998875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=401.94 Aligned_cols=220 Identities=29% Similarity=0.444 Sum_probs=196.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++|++|.|++ .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. .....
T Consensus 3 ~~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred ceEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 36999999999963 2469999999999999999999999999999999999999999999999999854 33455
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. .+..+|+.||+.+.....+.+..+.+++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 778999999963 344579999999865545555555667889999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++.++|||+++|++|++++.|+++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999986 4589999999999999999999999999999999998764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=395.33 Aligned_cols=220 Identities=32% Similarity=0.509 Sum_probs=193.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++||++.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999973 14699999999999999999999999999999999999999999999999988542 344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
.++.+||+||++.+++.+|++||+.+... +.+...++..+++.++++.+++. +..++++.+||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--DKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--hhhCCCcccCCHHHHHHH
Confidence 67789999999999999999999986432 11222234456788899999996 478999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999999986 3 4899999999999999999999999999999999998874
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 3
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=395.43 Aligned_cols=222 Identities=33% Similarity=0.539 Sum_probs=197.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999973 1469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|++||+.++....+...++..+++.++++.+++.+.+..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999998766655444455667889999999962026789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999986 33 8999999999999999999999999999999999988754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=405.99 Aligned_cols=224 Identities=27% Similarity=0.425 Sum_probs=197.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMD 320 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~~ 320 (568)
++++||+|+|++..+ ..+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 889999999974211 02469999999999999999999999999999999999999999999999999852 234
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 321 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
..++.+|||||++ .+++ .|++||+.+.....+.+.++..++++++++.++|.+ ...++++.+||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHHH
Confidence 5677899999986 4664 699999998765556666666678899999999962 36799999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 L~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999986 3 38999999999999999999999999999999999988754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=393.97 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=196.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 4789999999973 569999999999999999999999999999999999999999999999999864 2235
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|++||+.+... ..+...++..+++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh--HHHhcChhhcCHHHHHHHHHHHHHh
Confidence 57789999999999999999999987532 23444445566788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 9999999999999999999999999999864 58999999999999999999999999999999999988754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=387.11 Aligned_cols=209 Identities=32% Similarity=0.567 Sum_probs=189.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999963 569999999999999999999999999999999999999999999999988743 45678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.+....++.+..+.+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh--HHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666555555667889999999996 478899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
++|||||+|||+.+++.+++.|++. ++|+|||++||+.+++..+|||+++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999986 46899999999999999999999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=390.98 Aligned_cols=211 Identities=30% Similarity=0.457 Sum_probs=185.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH----HH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----DR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~~ 321 (568)
++++||++.|++.. ..+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999997421 0156999999999999999999999999999999999999999999999999885421 12
Q ss_pred -hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 -~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|++||+.+....++....+.+++++++++.+||. +..++++++||||||||++|||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhcChhhcCHHHHHHHHHHHHHc
Confidence 3568999999999999999999999876665544444556789999999996 3679999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++ +|||+++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999986 4 4899999999999998 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=393.19 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-Hh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~ 322 (568)
+++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 5899999999973 4699999999999999999999999999999999999999999999999988542 22 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++++||||||||++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 467999999999999999999998854321 112233456789999999996 4789999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
||||++.+|++++|||||+|||+.+++.++++|+++.+++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999766899999999999999999999999999999999988874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=402.97 Aligned_cols=225 Identities=25% Similarity=0.410 Sum_probs=197.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
.++++||+|.|++... ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4889999999973210 01469999999999999999999999999999999999999999999999998853 13
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
...++.+||+||++ .++ .+|++||+.+.....+...++..++++++++.+||.. +..++++++||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE-DLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhhCCcccCCHHHHHHHHHHH
Confidence 45667899999996 355 5799999987655455555556678899999999952 3689999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 69999999999999999999999999999999999998754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=387.24 Aligned_cols=209 Identities=28% Similarity=0.466 Sum_probs=187.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 24699999999999999999999999999999999999999999999999998542 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.+||+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999876555544445567889999999996 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999986 458999999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=385.76 Aligned_cols=207 Identities=32% Similarity=0.596 Sum_probs=187.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|+|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999963 5799999999999999999999999999999999999999999999999987543 455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.++....+. .+++++++++.+++. +..++++++||||||||+++|||++.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK--DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999987654432 235678899999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999864 6899999999999999999999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=400.86 Aligned_cols=223 Identities=26% Similarity=0.425 Sum_probs=199.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++||++.|++.. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ---EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCC---cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3699999999997421 2459999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++++||+||++ .+++.+|++||+.+.....+.+.++..++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 78899999997 4677789999999866555666666677899999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++. .|||+++|++|+++..|+++++..
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999986 33 899999999999995 799999999999999999988754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=401.66 Aligned_cols=225 Identities=24% Similarity=0.414 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
.++++||+|.|++... ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3889999999963210 02469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
..+|+.||||||++ .+++ .|++||+.+.....+.+.++..++++++++.+||.. +..++++.+||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-DVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45778999999986 5666 499999998765556566666778899999999952 3678999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+++++++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999863 48999999999999999999999999999999999988754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=406.32 Aligned_cols=226 Identities=22% Similarity=0.374 Sum_probs=198.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
++|+++|+++.|++... ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 20 ~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 57999999999974210 12469999999999999999999999999999999999999999999999998743
Q ss_pred -----------cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC
Q 008362 318 -----------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384 (568)
Q Consensus 318 -----------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~ 384 (568)
.....|+.+|||||++ .+++. |++||+.+.....+.+.++..++++++++.++|.+ +..++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~ 176 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-SYLERSPFG 176 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-hHhcCCccc
Confidence 2345678999999987 57764 99999987654445555566678899999999952 368999999
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 385 LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 469999999999999999999999999999999
Q ss_pred ecCHHHHHH
Q 008362 464 IGNPKELKA 472 (568)
Q Consensus 464 ~g~~~~l~~ 472 (568)
.|+++++..
T Consensus 257 ~g~~~~~~~ 265 (320)
T PRK13631 257 TGTPYEIFT 265 (320)
T ss_pred eCCHHHHhc
Confidence 999998754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=415.48 Aligned_cols=209 Identities=27% Similarity=0.438 Sum_probs=189.4
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe----eCCC-cH---HHhh-cceEEEcCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL----DIRT-DM---DRIY-TSMGVCPQED 333 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~----~i~~-~~---~~~r-~~ig~~~Q~~ 333 (568)
.+.+++|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+ ++.. .. .+.| +++||+||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 467999999999999999999999999999999999999999999999997 4432 11 2233 5799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 008362 334 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413 (568)
Q Consensus 334 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts 413 (568)
.+++.+|++||+.+.....+.++.+.++++.++++.+||. ++.++++.+||||||||++|||||+.+|+++||||||+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~--~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA--QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 9999999999999887666766666677899999999996 48899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 414 GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 414 gLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||.+++.+++.|.++. .|+|||++|||++++.++||||++|++|+++..|+++++..+
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 194 ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999863 389999999999999999999999999999999999998654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=408.27 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=204.1
Q ss_pred CeEEEEeEEEEcCCCCC----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-
Q 008362 244 HAIISDNLRKIYPGRDG----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD- 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~- 318 (568)
++|+++||+|.|+.+.+ ...+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999974211 0125799999999999999999999999999999999999999999999999998542
Q ss_pred ---HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 319 ---MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 319 ---~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
....|+++||+||++ .+.+.+|+.+++....... +...++.++++.++++.+||.+ ...++++++||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHH
Confidence 234677899999997 6899999999998755543 3455566678999999999963 46799999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999863 489999999999999999999999999999999999998
Q ss_pred HHhcCCcE
Q 008362 471 KARYGGSY 478 (568)
Q Consensus 471 ~~~~~~~~ 478 (568)
.+...+.|
T Consensus 243 ~~~p~hpy 250 (327)
T PRK11308 243 FNNPRHPY 250 (327)
T ss_pred hcCCCCHH
Confidence 76544433
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=405.10 Aligned_cols=225 Identities=26% Similarity=0.376 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------- 317 (568)
.|+++||+++|++... ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 4889999999974210 12369999999999999999999999999999999999999999999999886521
Q ss_pred ------------------cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCc
Q 008362 318 ------------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377 (568)
Q Consensus 318 ------------------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~ 377 (568)
.....++.+||+||++ .++ ..||+||+.+.....+.+.++..+++.++++.+||.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~ 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-SY 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hh
Confidence 2345678899999985 455 4699999998766667666677788999999999962 47
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
.++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999986 45999999999999999999999999
Q ss_pred ECCEEEeecCHHHHHH
Q 008362 457 VDGSLQCIGNPKELKA 472 (568)
Q Consensus 457 ~~G~l~~~g~~~~l~~ 472 (568)
++|++++.|+++++.+
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 239 KDGKIIKDGDTYDILS 254 (305)
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=387.61 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=191.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-Hhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~r 323 (568)
|+++|++|+|++ +++++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999973 4699999999999999999999999999999999999999999999999988542 22 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.+||+||++.+++.+|++||+.+.....+ ..+..+++.++++.+ ++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhh--hhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999998755443 233445677788888 465 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++++|||||+|||+.+++.++++|++.. +|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999864 6899999999999999999999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=397.29 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----H
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~ 319 (568)
++|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999987532 1
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
...++.+||+||++.+++.+|+.||+.+..... +.+.++.++++.++++.+++. +..++++++||||||||++||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR--GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHH
Confidence 234678999999999999999999998754332 233334456788899999996 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999986 33 8999999999999999999999999999999999988765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=392.97 Aligned_cols=220 Identities=28% Similarity=0.421 Sum_probs=196.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------ 318 (568)
+++++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 6899999999973 4699999999999999999999999999999999999999999999999987531
Q ss_pred ---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 319 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 ---~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
....++.+||+||++.+++.+|++||+.+... .++...++..+++.++++.+|+. +..++++++||||||||++
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA--GKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--chhhCChhhCChHHHHHHH
Confidence 23456789999999999999999999987533 23334444556788999999996 3678999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.++++|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 58999999999999999999999999999999999988754
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=397.68 Aligned_cols=222 Identities=26% Similarity=0.428 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+++++|++|.|++ .+.+++|+||++++||++||+|+||||||||+|+|+|+.+|++|+|.++|+++.. .....
T Consensus 2 ~~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 36899999999963 2459999999999999999999999999999999999999999999999998854 34456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. .+...|+.||+.+.....+...++..++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999973 233579999998765544555555667789999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.+++++++++ + |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999999999999999999999999998864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=399.24 Aligned_cols=221 Identities=27% Similarity=0.435 Sum_probs=196.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+|+++|++++|++ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 7999999999962 2569999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++. .+...|++||+.+.....+.+.++..++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999873 233479999998865544555556667889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999998754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=387.14 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=191.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-H--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-D-- 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~-- 320 (568)
++++++||+|.|+++. ..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 4699999999997421 0146999999999999999999999999999999999999999999999999985421 1
Q ss_pred -Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 321 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 321 -~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.. ++.+||+||++.+++.+|++||+.+.....+...++.++++.++++.+||. +..++++.+||||||||++||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE--HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 22 367999999999999999999999865554444455567889999999996 47889999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
++.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++. +||+++|++|++++.++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999986 3 58999999999999987 479999999999988763
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=392.51 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=192.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 4789999999962 24699999999999999999999999999999999999999999999999987531 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..++.+||+||++.+++.+|++||+.+... +.+...++..+++.++++.+++. +..++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHH
Confidence 356789999999999999999999976321 11112234456788999999996 47899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++.++||++++|++|++++.|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999999986 4 389999999999999999999999999999999998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=385.77 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=189.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|++|.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 4789999999942 24699999999999999999999999999999999999999999999999988541 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.++|+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++++||||||||++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHH
Confidence 35678999999999888999999999876555555455566788999999996 3689999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
.+|+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999986 458999999999999999999999999999853
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=376.89 Aligned_cols=222 Identities=29% Similarity=0.453 Sum_probs=196.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
++++++||+..||+ .+||++|||++++|||++|+|+||||||||+|+|+|+.+|.+|+|.++|+|+.. ..+.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47999999999984 689999999999999999999999999999999999999999999999999975 3456
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.|..|+||||...+|+.|||+|||.+.+..+.. ++..+..++++.+.+--- ++.++++.++|||||||.|+|||||+.
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 788999999999999999999999987554321 111122266666665422 257899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|++++|||||.||-|.-.+++.+.|++++ + |.||+++.++...|.+++||.++|++|+++..|+.++|.+.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999975 4 78999999999999999999999999999999999998753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=398.59 Aligned_cols=222 Identities=24% Similarity=0.419 Sum_probs=198.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~ 322 (568)
++++++||++.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++... ....
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 469999999999631 25699999999999999999999999999999999999999999999999998642 3455
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++ .++..+|+.||+.+.....+.+.++.+++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 67899999997 3667789999999876655555566667899999999997 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|+++. + |+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 3 8999999999999975 99999999999999999988754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=393.19 Aligned_cols=223 Identities=26% Similarity=0.457 Sum_probs=197.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 347999999999973 4699999999999999999999999999999999999875 89999999998753
Q ss_pred c---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ~---~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
. ....++.+||+||++.+++ +|++||+.+.....+.+.++.+++++++++.+++.. .+..++++.+||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 1 2345678999999999888 899999998765555544445567888999998831 135688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999999999999999999999999998864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=399.45 Aligned_cols=219 Identities=28% Similarity=0.427 Sum_probs=195.4
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH---h
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR---I 322 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~---~ 322 (568)
.++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .
T Consensus 26 ~~~~~~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQ------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCC------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 46799999973 5799999999999999999999999999999999999999999999999988542 111 2
Q ss_pred -hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 -r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++++||+||++.+++.+|++||+.+.....+....+..+++.++++.++|. +..++++++||||||||++|||||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999999876555544445566788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|+++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+||++++|++|++++.|+++++.+.
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999986 3 389999999999999999999999999999999999988653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=383.79 Aligned_cols=209 Identities=26% Similarity=0.434 Sum_probs=187.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999963 24699999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++|||||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS--HKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999876655544455567889999999996 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999986 4689999999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=390.10 Aligned_cols=219 Identities=31% Similarity=0.546 Sum_probs=196.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~ 322 (568)
+++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++... ....
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 6899999999973 5699999999999999999999999999999999999999999999999988542 2334
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++++||||||||++||||++.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE--HLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH--HHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999998765443 233344556788999999996 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+|||+.+++.+++++++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999998864 5899999999999999999999999999999999998874
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=396.98 Aligned_cols=220 Identities=25% Similarity=0.394 Sum_probs=195.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~ 322 (568)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999963 24699999999999999999999999999999999999999999999999988542 3456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. .+...|++||+.+.....+.+.++..++++++++.++|. +..++++++||||||||++|||||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE--KYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 778999999975 355689999998866555555556667889999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.+++.+++++ +|+|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 5999999999999996 599999999999999999988754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=391.06 Aligned_cols=223 Identities=26% Similarity=0.414 Sum_probs=196.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
.+++++||+|.|++ +++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 36899999999973 4699999999999999999999999999999999999987 49999999999852
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++++||+||++.+++.+|+.||+.+....++. +.++..++++++++.+++.. ....++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2345677899999999999999999999886544432 23344567888999999842 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999998886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 237 ~ 237 (253)
T PRK14267 237 E 237 (253)
T ss_pred h
Confidence 4
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=389.79 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-c
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-D 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-~ 318 (568)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999973 4699999999999999999999999999999999999874 79999999999854 3
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ 394 (568)
....++.+||+||++.+++.+|++||+.+.....+. ..++..+++.++++.++|.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445678899999999888899999999886544332 23445567889999999852 12468999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+||||+.+|++++|||||+|||+.+++.++++|++.++|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999999999999999999999999999999999987668999999999999999999999999999999999988754
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=390.25 Aligned_cols=222 Identities=25% Similarity=0.411 Sum_probs=195.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 317 (568)
+.|+++|++++|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 47999999999973 469999999999999999999999999999999999964 689999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ .|++||+.+....++.. .++.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23456788999999998888 59999998865554432 2344567888999999842 124688899999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988668999999999999999999999999999999999988754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=382.86 Aligned_cols=208 Identities=32% Similarity=0.525 Sum_probs=183.4
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ 325 (568)
+++|++|.|++. .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.
T Consensus 1 ~~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 368999999731 2569999999999999999999999999999999999999999999999998854 33456788
Q ss_pred eEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 326 MGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 326 ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++|+||++. .++.+|++||+.+.....+...++.+++++++++.+++. +..++++++||||||||++|||||+.+|+
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~ 154 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999975 356789999998865544444445556788999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|+
T Consensus 155 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999864 58999999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=395.37 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+++++||+|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999973 469999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEEcCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+ +...|+.||+.+.....+...++..++++++++.+++. ++.++++.+||||||||++|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHHHHHHHHHHH
Confidence 67789999999753 34468999998865555554455566788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999864 58999999999999999999999999999999999988754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=390.32 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=196.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 36999999999973 579999999999999999999999999999999999999999999999998742
Q ss_pred --------cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 318 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 318 --------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+|+.+ ...++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~G 156 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE-RAQGKYPVHLSGG 156 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHH
Confidence 12345778999999999999999999998643 2333344455677889999999963 2248899999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 599999999999999999999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++.+
T Consensus 237 ~~~~~ 241 (257)
T PRK10619 237 EQLFG 241 (257)
T ss_pred HHhhh
Confidence 88754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=381.77 Aligned_cols=203 Identities=29% Similarity=0.471 Sum_probs=179.5
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcce
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~i 326 (568)
+++|++|+|++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++++
T Consensus 1 ~~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSI 73 (205)
T ss_pred CcccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcce
Confidence 36899999963 1469999999999999999999999999999999999999999999999998753 3456789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 327 GVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 327 g~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
||+||++. .+..+|++||+.++....+ ...+++.++++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCc--hhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999974 2345799999988654332 1235688999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~ 462 (568)
++|||||+|||+.+++.++++|++. ++|+|||++||++++++.+|||+++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999986 56899999999999999999999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=390.48 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=195.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
.+++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999973 4699999999999999999999999999999999999997 59999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ +|++||+.+.....+. ...+.++++.++++.+++.+ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23456788999999998885 8999999986554443 23344567888999998731 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999999865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 239 ~ 239 (254)
T PRK14273 239 N 239 (254)
T ss_pred C
Confidence 3
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=405.03 Aligned_cols=232 Identities=19% Similarity=0.285 Sum_probs=199.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEECCeeCCCc-H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~----p~~G~i~i~G~~i~~~-~ 319 (568)
+++++||++.|+... +...||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDES--APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCC--ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 589999999997531 12569999999999999999999999999999999999997 4899999999998542 2
Q ss_pred H---Hhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCCCCChhHHH
Q 008362 320 D---RIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 320 ~---~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~LSgG~kq 391 (568)
+ +.| +.+||+||++ .+++.+|+.+++....... +...++.++++.++++.+||.+ ....++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2 222 4799999997 5889999999887655443 4445566778999999999963 12468999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|+|++|||++++..+||||++|++|++++.|++++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999863 48999999999999999999999999999999999999
Q ss_pred HHHhcCCcE
Q 008362 470 LKARYGGSY 478 (568)
Q Consensus 470 l~~~~~~~~ 478 (568)
+.+...+.|
T Consensus 241 ~~~~p~hpy 249 (326)
T PRK11022 241 IFRAPRHPY 249 (326)
T ss_pred HhhCCCChH
Confidence 977654444
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=396.32 Aligned_cols=226 Identities=31% Similarity=0.454 Sum_probs=198.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
++++++|++|+|++..+..++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 579999999999742111135699999999999999999999999999999999999999999999999998542 345
Q ss_pred hhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++.+||+||++. ++ ..|+.||+.+.....+.+..+.+++++++++.+||. +..++++.+||||||||++|||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY--EYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHH
Confidence 6788999999974 44 469999999876555555556677889999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999986 3 48999999999999986 999999999999999999998654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=390.29 Aligned_cols=220 Identities=27% Similarity=0.416 Sum_probs=195.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5899999999973 469999999999999999999999999999999999999999999999998754 334456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 400 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--- 400 (568)
+.+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 78999999998888899999998864433333334456788999999996 4789999999999999999999999
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ---~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+|||+.+++.+.++|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999863 58999999999999999999999999999999999887643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=386.25 Aligned_cols=219 Identities=25% Similarity=0.414 Sum_probs=195.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------- 317 (568)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5889999999973 469999999999999999999999999999999999999999999999998731
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.....++++||+||++.+++.+|++||+.+ .....+...++..+++.++++.+|+. +..++++.+||||||||++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK--PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 123557789999999999999999999975 33344444445566789999999996 478999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999987753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=383.51 Aligned_cols=218 Identities=23% Similarity=0.383 Sum_probs=185.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH----H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~ 320 (568)
+++++||++.|+++. +...+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999997421 0126999999999999999999999999999999999999999999999999986422 3
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCch-hHHHH-HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGP-ALTQA-VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~-~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
..++.+||+||++ .+++.+|++||+.+.....+.... +..++ ++++++.+++.. ...++++.+||||||||++||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-EVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-hHhhCCchhcCHHHHHHHHHH
Confidence 5677899999998 567789999999876544432222 22222 357899999942 367899999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
|||+.+|+++||||||+|||+.+++.+++.|++.. + |+|||++||+++++..+|||+++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999863 4 899999999999999999999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=380.48 Aligned_cols=208 Identities=28% Similarity=0.466 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHHh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI 322 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~~ 322 (568)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999973 469999999999999999999999999999999999999999999999998843 23456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++.+++.+|++||+.+... .++...++.+++++++++.+++. +..++++.+||||||||+++||||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhhCccccCHHHHHHHHHHHHHhc
Confidence 7889999999999999999999988643 33444445566788999999996 36899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+|+++||||||+|||+.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999864 589999999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=393.83 Aligned_cols=225 Identities=27% Similarity=0.405 Sum_probs=195.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
.++++||+|.|++... ..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4889999999974210 01469999999999999999999999999999999999999999999999998753 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
...++.+||+||++ .+++ .|++||+.+.....+.+.++..++++++++.++|.+ ...++++.+||||||||++|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999996 4565 699999988655545444555667889999999962 3578999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 58999999999999999999999999999999999988754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=390.24 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=190.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999973 4699999999999999999999999999999999999999999999999987532 24
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|++||+.+.....+...++..+++.++++.++|. +..++++.+||||||||+++||||+.+|+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--GAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999998865555555455567789999999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEE--CCEEEeecCHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNPK 468 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~--~G~l~~~g~~~ 468 (568)
++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+|||+++|+ +|+++..++.+
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999986 4 48999999999999999999999999 59999988754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-48 Score=392.64 Aligned_cols=220 Identities=29% Similarity=0.507 Sum_probs=194.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+++++|+++.|++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 4789999999963 2469999999999999999999999999999999999999999999999999842 2234
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++.+||+||++ .+++ +|+.||+.+.....+...++..+++.++++.++|. ++.++++++||||||||++||||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 678899999996 3454 69999998754333444445567788999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999864 59999999999999999999999999999999999998753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=385.37 Aligned_cols=219 Identities=25% Similarity=0.402 Sum_probs=192.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999988542 2 23
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|+.||+.+..... ..++..++++++++.+ ++. +..++++++||||||||++|||||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH--HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998753222 2233445677778877 475 3678899999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999986 469999999999999999999999999999999999988853
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=388.54 Aligned_cols=223 Identities=24% Similarity=0.389 Sum_probs=196.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
...++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 457999999999973 469999999999999999999999999999999999986 589999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....|+++||+||++.+++ +|++||+.+..... +.+.++..++++++++.+++.+ .+..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999998888 79999998765443 3444455677889999999841 13568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998885
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=388.24 Aligned_cols=221 Identities=26% Similarity=0.424 Sum_probs=193.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
.+++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 36999999999973 5799999999999999999999999999999999999999999999999988642 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh-------cCC------C--chhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRL-------KNL------K--GPALTQAVEESLKSVNLFHGGVADKQAGKYS 386 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l-------~~~------~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LS 386 (568)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..+++.++++.+|+. +..++++++||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL--EHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh--hhhhCChhhCC
Confidence 345699999999999999999999975321 111 0 112345678889999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||||||++||+||+.+|+++||||||+|||+.+++.++++|.++ ++ |+|||++||+++++..+|||+++|++|++++.
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999999999986 34 89999999999999999999999999999999
Q ss_pred cCHHHHHH
Q 008362 465 GNPKELKA 472 (568)
Q Consensus 465 g~~~~l~~ 472 (568)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99888743
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=380.28 Aligned_cols=212 Identities=24% Similarity=0.393 Sum_probs=185.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH---H
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD---R 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~---~ 321 (568)
++++|+++.|++.. ..+++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .. .
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 78999999996421 124699999999999999999999999999999999999999999999999988542 11 2
Q ss_pred hh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.| +.+||+||++.+++.+|++||+.+....++....+..+++.++++.+|+. +..++++++||||||||++|||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE--HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 33 67999999999999999999998865544444344456788999999996 3789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~ 462 (568)
.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||++++++. |||+++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999986 3 48999999999999976 8999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-48 Score=401.09 Aligned_cols=234 Identities=24% Similarity=0.403 Sum_probs=201.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCc-
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTD- 318 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~- 318 (568)
.+.++++||++.|+...+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 10 ~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 357999999999964211 357999999999999999999999999999999999999996 99999999998542
Q ss_pred H---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 008362 319 M---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 390 (568)
Q Consensus 319 ~---~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~k 390 (568)
. .+.| +.|+|+||++ .+++.+|+.+++......+ +.+.++..+++.++++.++|.+. +..++++++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2 2233 4799999997 6899999999998765544 34455666788999999999631 235789999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|++||+||||+|||+.+++.++++|++++ .|.|+|++|||++++..+||||++|++|++++.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999863 3899999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 008362 469 ELKARYGGSY 478 (568)
Q Consensus 469 ~l~~~~~~~~ 478 (568)
++.+...+.|
T Consensus 248 ~i~~~p~~py 257 (330)
T PRK09473 248 DVFYQPSHPY 257 (330)
T ss_pred HHHhCCCCHH
Confidence 9987654444
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=387.45 Aligned_cols=224 Identities=26% Similarity=0.437 Sum_probs=196.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~ 317 (568)
.++++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 357999999999973 469999999999999999999999999999999999987 3 69999999998852
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++. |++||+.+....++. ..++..++++++++.+++.+ .+..++++++|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567889999999998886 999999886555543 23444567888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999766899999999999999999999999999999999999986
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
++
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 53
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-48 Score=391.82 Aligned_cols=222 Identities=27% Similarity=0.468 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++|++|.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....+
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 479999999999631 3569999999999999999999999999999999999999999999999999864 33456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
|+.+||+||++. .++.+|++||+.+.....+...++.+++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865544444455566789999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|++++|||||+|||+.+++.++++|++++ + ++|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999864 4 599999999999996 799999999999999999887643
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=388.72 Aligned_cols=223 Identities=25% Similarity=0.445 Sum_probs=195.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
...|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 347999999999973 5699999999999999999999999999999999999874 89999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 390 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~k 390 (568)
.....|+.+||+||++.+++. |+.||+.+....++. +..+..+++.++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567889999999998885 999999876554443 23344567889999999952 0245788999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||++|||||+.+|+++||||||+|||+.+++.+.++|+++.+++|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999887
Q ss_pred HH
Q 008362 471 KA 472 (568)
Q Consensus 471 ~~ 472 (568)
..
T Consensus 250 ~~ 251 (267)
T PRK14235 250 FT 251 (267)
T ss_pred Hh
Confidence 54
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=389.86 Aligned_cols=228 Identities=26% Similarity=0.348 Sum_probs=197.0
Q ss_pred CeEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cH
Q 008362 244 HAIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~---~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~ 319 (568)
++|+++||+|+|+++.+ ++.+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999963211 112469999999999999999999999999999999999999999999999998854 23
Q ss_pred HHhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
...++.+||+||++. +++.+|+.|++.+..+.. +....+..++++++++.+++.+ ...++++.+||||||||++||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHHhcCchhcCHHHHHHHHHH
Confidence 334567999999975 678889999998765543 3334455567889999999952 367889999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999999999999999999999986 3 38999999999999999999999999999999999988865
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=384.74 Aligned_cols=223 Identities=25% Similarity=0.401 Sum_probs=195.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~- 317 (568)
..++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 35899999999973 469999999999999999999999999999999999986 4 69999999999853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++.+|++||+.+.....+. ...+.+++++++++.+++.. .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335678899999999999999999999875544332 23344567889999999852 124578899999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++.+++|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998667999999999999999999999999999999999998864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=384.39 Aligned_cols=201 Identities=30% Similarity=0.522 Sum_probs=180.5
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEc-CCCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv 341 (568)
++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.+||+| |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 35799999999999999999999999999999999999999999999999987544445677899998 56788889999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
+||+.+...+++...++..++++++++.+++. +..++++.+||||||||+++|+||+.+|+++||||||+|||+.+++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 99999876666655555566788899999996 3789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 422 NLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 422 ~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
.+.++|++. + +++|||++||+++++..+||++++|++|++++.|
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999986 3 3899999999999999999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=389.08 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+.
T Consensus 10 ~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 47999999999973 579999999999999999999999999999999999999999999999998753 33456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++.++|+||++.+++.+|+.||+.+... ..+ ....+..++++++++.+++. +..++++++||||||||++||||
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHHHHHHH
Confidence 7789999999888899999999987432 111 11233456788999999996 37899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999986 33 899999999999999999999999999999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=383.65 Aligned_cols=222 Identities=25% Similarity=0.420 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI---TRT--TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl---~~p--~~G~i~i~G~~i~~- 317 (568)
++++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 47999999999973 5699999999999999999999999999999999997 455 59999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ .|++||+.+....++... +..+++++++++.+++.+ .+..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 23456778999999998887 599999987655544332 334567889999999852 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++.+++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999987678999999999999999999999999999999999999865
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-48 Score=382.23 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HHhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~~r 323 (568)
|+++||++.|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 2 2245
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.+||+||++.+++.+|+.||+.+.....+.. ..+..+++++.++ +. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLK--EMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHH--HHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998865543322 2234567777776 44 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|++++|||||+|||+.+++.++++|++.+ .|+|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999864 389999999999999999999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=384.34 Aligned_cols=223 Identities=26% Similarity=0.418 Sum_probs=196.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357999999999973 5699999999999999999999999999999999999875 89999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++ +|++||+.+.....+. ...+..++++++++.+++.+ .+..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22355788999999999988 8999999987655543 23344567888999998742 12568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++||||++.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999875
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 235 ~ 235 (251)
T PRK14270 235 L 235 (251)
T ss_pred c
Confidence 4
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=379.29 Aligned_cols=303 Identities=25% Similarity=0.402 Sum_probs=244.2
Q ss_pred eEEEEeEEEEcCCCC---------------CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 008362 245 AIISDNLRKIYPGRD---------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~---------------~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~ 309 (568)
++.++||+|.|.-.- ..+...|++|+||+|++|+++|++|+||||||||+|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 577788888774310 01235699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 310 VQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 310 i~G~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
++|+++..+.+..-+++|+++ |...++.++.+.|.+..-..++.++.++.+++.+.+.+.++|+ +..+.+++.||-|
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~--~~lk~~vr~LSlG 160 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE--GFLKWPVRKLSLG 160 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hhhhhhhhhccch
Confidence 999999877777778888875 7788999999999999888889999999999999999999996 4899999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
||+|+.||.||+++|+|++|||||-|||..++..+.+.++++ +++.||++|||+|+.++++||||+.|++|+++.+|+
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 999999999999999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEec
Q 008362 467 PKELKARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLA 546 (568)
Q Consensus 467 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 546 (568)
.++++++|+....+.+....... ..++ ...++..... +....+..+. .+..+.+.+...++.+.|..+.
T Consensus 241 l~~l~~~f~~~k~~~~el~~~~~--~~~l--~~l~d~~~~~--~~~~~~~~~r-----~~~~~~i~~~~~e~~v~Dl~v~ 309 (325)
T COG4586 241 LAQLQEQFGPYKEFSVELKQAKS--LSQL--ALLGDVTIEE--GLNIKNDVSR-----EESADIIAKLLAEFEVRDLTVE 309 (325)
T ss_pred HHHHHHHhCCceEEEEEEccccc--chhc--cccchhhhhc--ccchhhcchh-----HHHHHHHHHHHHhhhhccCCCC
Confidence 99999999998777665541111 0000 0001111100 1111222111 1222333334456778899999
Q ss_pred cCCHHHHHHHhhcc
Q 008362 547 DTTLEDVFIKVARH 560 (568)
Q Consensus 547 ~~tLEdvFl~~~~~ 560 (568)
++..|++--++.++
T Consensus 310 d~~ie~vi~r~y~~ 323 (325)
T COG4586 310 DPEIEDVIRRIYQK 323 (325)
T ss_pred CCcHHHHHHHHHhc
Confidence 99999998887654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=386.92 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=194.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++|++++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5899999999973 579999999999999999999999999999999999999999999999998753 334556
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+.+||+||++.+++.+|+.||+.+... ..+...++..++++++++.+++. +..++++.+||||||||++||||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHHHHHHH
Confidence 789999999999989999999987421 11222234456788999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999999999999999864 5899999999999999999999999999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=379.47 Aligned_cols=216 Identities=24% Similarity=0.414 Sum_probs=188.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-- 320 (568)
++++++|+++.|++.. ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4799999999997421 013599999999999999999999999999999999999999999999999988542 11
Q ss_pred -Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 321 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 321 -~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
+. ++.+||+||++.+++.+|+.||+.+....++.+.++.++++.++++.+++. +..++++.+||||||||++||+|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHH
Confidence 12 357999999999999999999998765444444445567889999999996 37789999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
|+.+|+++||||||+|||+.+++.++++|++. ++ |+|||++||++++++. |||+++|++|++++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 99999999999999999999999999999986 44 8999999999999865 999999999998753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=385.67 Aligned_cols=219 Identities=24% Similarity=0.401 Sum_probs=194.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-------
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------- 318 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------- 318 (568)
|+++||++.|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999973 4699999999999999999999999999999999999999999999999987421
Q ss_pred -------HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 319 -------MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 319 -------~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
....++.+||+||++.+++.+|+.||+.+... .++...++..+.+.++++.+++. +..++.+.+||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA--DKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhhcChhhcCHHHH
Confidence 13457889999999999999999999987432 23444445566788999999996 478999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999986 43 899999999999999999999999999999999998
Q ss_pred HHHH
Q 008362 469 ELKA 472 (568)
Q Consensus 469 ~l~~ 472 (568)
++.+
T Consensus 233 ~~~~ 236 (252)
T TIGR03005 233 EIFR 236 (252)
T ss_pred HHhc
Confidence 8754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=385.49 Aligned_cols=222 Identities=27% Similarity=0.438 Sum_probs=195.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999973 4699999999999999999999999999999999999874 79999999998742
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++.+|++||+.+....++. +.++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345678899999999999999999999886554442 33445567888999999841 1356889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE------CCEEEeecCH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNP 467 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~------~G~l~~~g~~ 467 (568)
+|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|++++.|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 9999999999999999999999999999999999987667999999999999999999999997 7999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++..
T Consensus 238 ~~~~~ 242 (258)
T PRK14241 238 EKIFS 242 (258)
T ss_pred HHHHh
Confidence 88854
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=382.82 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=195.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCC-cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~-~~~ 320 (568)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5889999999973 569999999999999999999999999999999999974 799999999999864 334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC--chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK--GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~la 396 (568)
..|+.+||+||++.+++ .|++||+.+....++.. .+..+++++++++.+++.+ .+..++++.+||||||||+++|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56788999999999997 69999999865554431 2344567888999999942 0246888999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||+.+|++++|||||+|||+.+++.+.+.|++..+|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999987668999999999999999999999999999999999998764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=376.51 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=182.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|+|++ +. .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHcc
Confidence 468999999963 22 3999999999999999999999999999999999999999999999885432 23578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+.........++.++++.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA--GLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998754321111233456788999999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|+++. .|+|||++||+++++..+|||+++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999863 4899999999999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=388.28 Aligned_cols=222 Identities=27% Similarity=0.447 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++|++|.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 479999999999742 2459999999999999999999999999999999999999999999999999854 34567
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. +++..|+.+|+.+.....+.+.++..++++++++.+++. +..++++.+||||||||++||||++.
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865544444455566788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999986 99999999999999999988754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=386.52 Aligned_cols=223 Identities=26% Similarity=0.425 Sum_probs=193.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 457999999999973 569999999999999999999999999999999999864 799999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++. |++||+.+.....+... ...++.+.++++.+++.+ .+..++++++|||||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 223457789999999998885 99999987644433222 233456788888888842 02468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999998886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 252 ~ 252 (268)
T PRK14248 252 T 252 (268)
T ss_pred h
Confidence 5
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=392.57 Aligned_cols=225 Identities=27% Similarity=0.391 Sum_probs=194.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------c
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------D 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------~ 318 (568)
.|+++|++|+|+++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 6 ~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5899999999974210 01359999999999999999999999999999999999999999999999998742 2
Q ss_pred HHHhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
....|+.+||+||++. +++ .|++||+.+.....+...++..++++++++.++|.. +..++++++||||||||++||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 3456778999999973 454 599999987654444444455567888999999942 468999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999986 3 48999999999999999999999999999999999988743
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=387.83 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 317 (568)
.+++++||+++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 12 IIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred ceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 57999999999973 569999999999999999999999999999999999987 699999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....|+.+||+||++.+++. |++||+.+....++.. .+.++++.++++.+++.. .+..++++.+||||||||+
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred cCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 344567789999999999884 9999999876554432 234456778888888731 1357889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC-----------CEEE
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-----------GSLQ 462 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~-----------G~l~ 462 (568)
+|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 99999999999999999999999999999999999886689999999999999999999999996 6789
Q ss_pred eecCHHHHHH
Q 008362 463 CIGNPKELKA 472 (568)
Q Consensus 463 ~~g~~~~l~~ 472 (568)
+.|+++++.+
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 9999988865
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=383.43 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=192.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5899999999963 469999999999999999999999999999999999999999999999998854 334567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++ .|++||+.+....++ ...+++.++++.+++.+ +..++++.+||||||||++||||++.+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999887 699999987543332 12356788999999952 3678999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+++||||||+|||+.+++.+.+.|++. + +|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999999986 3 48999999999999999999999999999999999988754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=390.78 Aligned_cols=222 Identities=25% Similarity=0.451 Sum_probs=197.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eEEEECCeeCCC-cH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRT-DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~---G~i~i~G~~i~~-~~ 319 (568)
.+++++|++|.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|+++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 479999999999632 2469999999999999999999999999999999999999998 899999999864 33
Q ss_pred HHhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
...++++||+||++. +++.+|++||+.+.....+.+.++..+++.++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML--DYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHH
Confidence 456778999999974 667789999998765555555556667889999999996 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999986 3 3899999999999996 799999999999999999988754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=398.57 Aligned_cols=230 Identities=19% Similarity=0.272 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEECCeeCCC-cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRT-DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~----p~~G~i~i~G~~i~~-~~ 319 (568)
+|+++||+|.|+.+. +.+.|++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSD--GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCC--CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999996421 13579999999999999999999999999999999999986 589999999999854 22
Q ss_pred H---Hh-hcceEEEcCCCC--CCCCCCHHHHHHHHhhh---cCC---CchhHHHHHHHHHHHcCCCCC-CcccccCCCCC
Q 008362 320 D---RI-YTSMGVCPQEDL--LWETLTGREHLLFYGRL---KNL---KGPALTQAVEESLKSVNLFHG-GVADKQAGKYS 386 (568)
Q Consensus 320 ~---~~-r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l---~~~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LS 386 (568)
. .. ++.|||+||++. +.+.+|+.+++...... .+. ...+.++++.++++.+||.+. +..++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 2 22 357999999975 67889999999764221 111 113445678999999999631 24589999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||||||++|||||+.+|++|||||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 389999999999999999999999999999999
Q ss_pred cCHHHHHHhcCC
Q 008362 465 GNPKELKARYGG 476 (568)
Q Consensus 465 g~~~~l~~~~~~ 476 (568)
|+++++.+...+
T Consensus 241 g~~~~i~~~p~~ 252 (330)
T PRK15093 241 APSKELVTTPHH 252 (330)
T ss_pred CCHHHHHhCCCC
Confidence 999998765433
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=387.19 Aligned_cols=227 Identities=22% Similarity=0.362 Sum_probs=195.7
Q ss_pred eEEEEeEEEEcCCCC---CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-
Q 008362 245 AIISDNLRKIYPGRD---GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M- 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~---~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~- 319 (568)
+++++||+|.|++.. +..++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999996310 00135799999999999999999999999999999999999999999999999988542 1
Q ss_pred --HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 320 --DRIYTSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 320 --~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
...++.+||+||++ .+++.+|++||+.+.... .+...++..+++.++++.+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-EDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhhCChhhCCHHHHHHHH
Confidence 23567899999996 467789999999865432 23333445567889999999952 3678999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999998864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=379.48 Aligned_cols=218 Identities=35% Similarity=0.560 Sum_probs=196.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-HKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-hhcc
Confidence 468999999973 579999999999999999999999999999999999999999999999998864322 3578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++.......++++++++.+++. +..++.+.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998866655544455566788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+||||||+|||+.+++.+++++++++ + |+|||++||+++++..+|||+++|++|++.+.|+++++.+
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999999864 3 8999999999999999999999999999999999888765
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=379.79 Aligned_cols=217 Identities=26% Similarity=0.477 Sum_probs=195.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|+++.|++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~-------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC-------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999962 38999999999999999999999999999999999999999999999998864222 3578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|+.||+.+.....+....+..+++.++++.++|. +..++++.+||||||||++||||++.+|++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID--HLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998765555544455666788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+|||+.+++.+++++++.. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999863 3 8999999999999999999999999999999999888754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=378.35 Aligned_cols=206 Identities=27% Similarity=0.494 Sum_probs=179.2
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcce
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~i 326 (568)
+++||+|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.+
T Consensus 1 ~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i 70 (213)
T cd03235 1 EVEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRI 70 (213)
T ss_pred CcccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhhe
Confidence 36899999973 46999999999999999999999999999999999999999999999998764 356789
Q ss_pred EEEcCCCCCCC--CCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 327 GVCPQEDLLWE--TLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 327 g~~~Q~~~l~~--~lTv~e~l~~~~~l~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
||+||++.+++ .+|++||+.+...... ...++.+++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHH
Confidence 99999987632 3799999987543211 12234456788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
.+|+++||||||+|||+.+++.+++.|++.. +|+|||++||+++++..+|||+++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999864 7899999999999999999999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=384.89 Aligned_cols=218 Identities=25% Similarity=0.427 Sum_probs=193.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 689999999973 579999999999999999999999999999999999999999999999998854 3345567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-h---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGR-L---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-l---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+||+||++.+++.+|++||+.+... . .+...++..+++.++++.+++. +..++++.+||||||||++||||++
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 89999999888888999999987421 1 1112233445788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999864 5899999999999999999999999999999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=386.51 Aligned_cols=220 Identities=20% Similarity=0.352 Sum_probs=194.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+|+++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999973 569999999999999999999999999999999999999999999999998854 33445
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++.+||+||++.+++.+|++||+.+... ..+ ...+...++++++++.++|. +..++++.+||||||||++||||
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT--HLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCChHHHHHHHHHHH
Confidence 6789999999999999999999987421 111 11233445788999999996 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999986 3 3899999999999999999999999999999999998874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=381.27 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCCc-HHH-
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MDR- 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~~-~~~- 321 (568)
|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999973 56999999999999999999999999999999999995 79999999999988542 222
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-------CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-------LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRL 393 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl 393 (568)
.+..++|+||++.+++.+|++||+.+...... ....+..+++.++++.++|.+ +..++++. +||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHHHHH
Confidence 34559999999999999999999987543221 122334567889999999962 35678887 5999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++++++.+ |||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 689999999999999998 8999999999999999998765
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 3
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=387.82 Aligned_cols=223 Identities=24% Similarity=0.400 Sum_probs=197.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++|+++.|++. ..+.+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 69999999999742 12469999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.+||+||++. .++..|+.||+.+.....+...++..++++++++.++|. ++.++++.+||||||||++|||||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 88999999974 566789999998765544445555567789999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+++||||||+|||+.+++.++++++++. + |+|||++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999863 3 899999999999997 5999999999999999999888653
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=380.96 Aligned_cols=221 Identities=26% Similarity=0.469 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
.++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5899999999973 4699999999999999999999999999999999999763 79999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....|+.+||+||++.+++ +|++||+.+....++.. .++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23456788999999998888 89999999865555432 2345667888899988741 1246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|++++|||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999988754
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=381.16 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RT---TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p---~~G~i~i~G~~i~~- 317 (568)
++++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 37999999999973 46999999999999999999999999999999999985 46 59999999998843
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ +|++||+.+.....+... +..++++.++++.+++.+ .+..++++.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999999887 799999988655544432 234567888899998742 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=379.41 Aligned_cols=218 Identities=28% Similarity=0.487 Sum_probs=196.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcC
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 234678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|+.||+.+....++.......+.++++++.+++. +..++.+++||+|||||+++||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE--GLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765554444444556788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+|||+.+++.++++|++.+ + |+|||++||+++++..+|||+++|++|++++.|+.+++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999864 3 8999999999999999999999999999999999998864
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=378.49 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=190.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|.|++ +. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ~l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRR 71 (232)
T ss_pred CeEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhc
Confidence 4789999999963 22 3899999999999999999999999999999999999999999999875422 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|+.||+.+.........+..++++.++++.+|+. +..++++.+||||||||++||||++.+|+
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE--DLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH--HHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999998653211111233456789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|++.+.|+++++.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999986 4 38999999999999999999999999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=380.81 Aligned_cols=221 Identities=26% Similarity=0.458 Sum_probs=194.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
+|+++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999973 4699999999999999999999999999999999999874 89999999998753
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.++|+||++.+++ +|++||+.+.....+.. .+..++.++++++.+++.+ ....++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 12345778999999999888 89999998865544432 2234566788899999852 0246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|++++|||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999998865
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=384.00 Aligned_cols=207 Identities=23% Similarity=0.376 Sum_probs=187.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..|+++||+|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ..+
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~ 80 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAR 80 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hhh
Confidence 56999999999973 46999999999999999999999999999999999999999999999997752 456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+.. .. ..++++.++++.++|. +..++++.+||||||||++|||||+.+|
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLA--DRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998742 11 2245788899999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
+++||||||+|||+.+++.+.++|+++ + .|+|||++||+++++..+|||+++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999885 4 4899999999999999999999999999999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=400.27 Aligned_cols=213 Identities=23% Similarity=0.397 Sum_probs=190.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 319 (568)
||++ ||+|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 4677 99999973 22 3 89999999999999999999999999999999999999999999987531 2
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
...++++||+||++.+|+.+|++||+.+... ...+++++++++.++|. +..++++++||||||||++|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999987532 12345788999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++|||++++..+|||+++|++|++...|+++++.++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999986 34 899999999999999999999999999999999999987643
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=384.41 Aligned_cols=219 Identities=23% Similarity=0.380 Sum_probs=193.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCC---
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT--- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~--- 317 (568)
++++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47999999999973 57999999999999999999999999999999999999986 4999999998743
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 386 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LS 386 (568)
.....++.+||+||++.+++.+|++||+.+.... .+...++.+++++++++.+|+. +..++++.+||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS 154 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV--HFAHQRVSTLS 154 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH--HHHhCCccccC
Confidence 1234567899999999999999999999864321 0111234456789999999996 37899999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++. +|+|||++||+++++..+|||+++|++|++.+.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999863 489999999999999999999999999999999
Q ss_pred cCHHHH
Q 008362 465 GNPKEL 470 (568)
Q Consensus 465 g~~~~l 470 (568)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 998875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=382.95 Aligned_cols=224 Identities=25% Similarity=0.405 Sum_probs=196.4
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCC
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 316 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~ 316 (568)
...+|+++|++|+|++ +++++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3457999999999963 579999999999999999999999999999999999986 58999999999985
Q ss_pred C---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 008362 317 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 390 (568)
Q Consensus 317 ~---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~k 390 (568)
. .....++.+||+||++.+++ .|++||+.+.....+. ...+.++++.++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 3 23456788999999998887 5999999886544443 23344567888999999842 1257889999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||++||||++.+|++++|||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999988
Q ss_pred HH
Q 008362 471 KA 472 (568)
Q Consensus 471 ~~ 472 (568)
..
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 54
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-47 Score=379.79 Aligned_cols=222 Identities=26% Similarity=0.460 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 317 (568)
++++++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999973 569999999999999999999999999999999999987 489999999998753
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||++|++.+++ .|++||+.+.....+... +..+++++++++.+++.. .+..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 23346778999999999887 799999987655444332 234567888999999841 024688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987668999999999999999999999999999999999988754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=379.11 Aligned_cols=223 Identities=24% Similarity=0.407 Sum_probs=195.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~- 317 (568)
+.++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46999999999973 46999999999999999999999999999999999999997 6999999998753
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++. |++||+.+....++... ++.++.++++++.+++.+ .+..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 234567889999999999885 99999998655544332 234466778888888742 135789999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987678999999999999999999999999999999999998865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 236 ~ 236 (251)
T PRK14249 236 R 236 (251)
T ss_pred C
Confidence 3
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=374.34 Aligned_cols=209 Identities=36% Similarity=0.619 Sum_probs=188.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... . ++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--~-~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--D-LHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--c-ccc
Confidence 468999999973 5699999999999999999999999999999999999999999999999987532 1 357
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.++....+.. ++++.++++.+++. +..++++.+||||||||+++|||++.+|++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLT--NTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCc--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876554432 34678899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
++|||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|++.+.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999864 58999999999999999999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=399.04 Aligned_cols=213 Identities=24% Similarity=0.404 Sum_probs=189.7
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHHhhc
Q 008362 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYT 324 (568)
Q Consensus 250 ~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~r~ 324 (568)
||+|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999973 33 4 99999999999999999999999999999999999999999999988532 124567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+|+.+|++||+.+..... ...+.+++++++++.++|. +..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIG--HLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998864422 2234456789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++....
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999986 34 899999999999999999999999999999999999987543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-47 Score=371.68 Aligned_cols=210 Identities=22% Similarity=0.402 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++||+|.|++ .++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-Chhccc
Confidence 368999999962 46799999999999999999999999999999999999999999999998542 235678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|+.||+.+.........++.+++++++++.+++. +..++.+.+||||||||++||||++.+|++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA--DYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH--HHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643321111223456788899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
++|||||+|||+.+++.+.++|++. ++ |+|||++||+++++..+|||+++|++|++++.|.
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999986 33 8999999999999999999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=379.38 Aligned_cols=223 Identities=25% Similarity=0.416 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~ 317 (568)
.++|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 347999999999973 569999999999999999999999999999999999975 3 48999999999854
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
...+.++.+||+||++.+++. |++||+.+..+.++.. ..+.++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 234567889999999999885 9999999876655432 2334567788889888742 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++||||++.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 237 ~ 237 (253)
T PRK14261 237 E 237 (253)
T ss_pred h
Confidence 5
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=378.36 Aligned_cols=221 Identities=25% Similarity=0.442 Sum_probs=193.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 6899999999973 5699999999999999999999999999999999999986 59999999998842
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ 394 (568)
.....++.+||+||++.+++ .|+.||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456788999999999998 79999998764443332 2334567788888888742 12467899999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999998667999999999999999999999999999999999988754
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=371.84 Aligned_cols=204 Identities=30% Similarity=0.466 Sum_probs=180.5
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cHHHhh
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMDRIY 323 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~~~~r 323 (568)
-||+|+|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 399999974 334 99999999 9999999999999999999999999999999999998753 123456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+..... ..+..++++.++++.+++. +..++++.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLD--HLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCH--hHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998764322 2233456788999999996 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
++++|||||+|||+.+++.++++|++. ++ |+|||++||++++++.+|||+++|++|++++.|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999986 44 899999999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=377.95 Aligned_cols=222 Identities=27% Similarity=0.433 Sum_probs=193.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~-- 317 (568)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6899999999973 57999999999999999999999999999999999999875 8999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++.+|+.||+.+.....+.. .++..+.++++++.+++.. .+..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23356778999999999999999999998755443332 2334556777777777631 1246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|++++|||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999998865
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=380.15 Aligned_cols=222 Identities=23% Similarity=0.360 Sum_probs=192.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-----CCCc
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRTD 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-----i~~~ 318 (568)
++++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 47999999999973 469999999999999999999999999999999999999999999999998 6432
Q ss_pred -HHH----hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 319 -MDR----IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 319 -~~~----~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
... .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++++.++++.+++.+ +..++++.+||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-ARIDDLPTTFSGGMQ 157 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-hHHhCCCccCCHHHH
Confidence 211 356799999997 467788999999764322221 22344567889999999952 367899999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999986 33 899999999999999999999999999999999999
Q ss_pred HHHH
Q 008362 469 ELKA 472 (568)
Q Consensus 469 ~l~~ 472 (568)
++..
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 8764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=381.33 Aligned_cols=232 Identities=25% Similarity=0.395 Sum_probs=205.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CceEEEECCeeCCCcH-
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-T----TSGTAYVQGLDIRTDM- 319 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p----~~G~i~i~G~~i~~~~- 319 (568)
++++||+..|....+ ...||+||||++++||++||+|.+|||||||.+.|.|+++ | ++|+|.++|+|+..-.
T Consensus 2 L~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999999975322 4679999999999999999999999999999999999998 4 6799999999885422
Q ss_pred ---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 008362 320 ---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 390 (568)
Q Consensus 320 ---~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~-~-~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~k 390 (568)
.++| +.|+++||++ .|.|-+|+.+.+.-..+.+. . .+++..+++.++|+.+|+.+. ...+.++.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 2344 5799999996 69999999999988777654 3 356778899999999999851 256999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
|||.||+||+.+|++||.||||++||...+.++.++|++++ .|.|+|++|||+..+.++||||+||..|++++.|+.+
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 5999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEE
Q 008362 469 ELKARYGGSYV 479 (568)
Q Consensus 469 ~l~~~~~~~~~ 479 (568)
++.+...+.|+
T Consensus 240 ~i~~~P~HPYT 250 (316)
T COG0444 240 EIFKNPKHPYT 250 (316)
T ss_pred HHhcCCCChHH
Confidence 99988777775
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=381.82 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 457999999999973 469999999999999999999999999999999999987 489999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.++|+||++.+++. |++||+.+.....+... +..+++++++++.+++.+ .+..++++.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 234567889999999999986 99999987655554322 234566888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998875
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 256 ~ 256 (272)
T PRK14236 256 T 256 (272)
T ss_pred c
Confidence 4
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=351.72 Aligned_cols=217 Identities=26% Similarity=0.453 Sum_probs=193.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
++.+++++..|+. .=-..+++|+.||+++|+||+|||||||+|+|+|+..|.+|+|.|+|+|..... -..|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccC
Confidence 3678899999973 345688999999999999999999999999999999999999999999986432 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
-++++||+++||..+||.+|+.++..- ++ -..+.+++++.++..+||. ++.++.+.+||||||||+++||+|+.+-
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P-~LkL~a~~r~~v~~aa~~vGl~--~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSP-GLKLNAEQREKVEAAAAQVGLA--GFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCc-ccccCHHHHHHHHHHHHHhChh--hHhhhCccccCchHHHHHHHHHHHhccC
Confidence 799999999999999999999985331 22 2355678899999999997 5999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|++||||+|+|||.-|.++..++.++ .++.|++|+||+.+++.+++||++++++||+...|+.+++.+.
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999885 4589999999999999999999999999999999999988654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=382.38 Aligned_cols=222 Identities=22% Similarity=0.437 Sum_probs=194.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 457999999999973 569999999999999999999999999999999999987 699999999998743
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.++|+||++.+++. |++||+.+....++.+ .+..++++++++.+++.+ .+..++++.+||||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 234567889999999988885 9999998876555443 244567889999999842 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEE-EEECCEEEeecCHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG-IFVDGSLQCIGNPKELK 471 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~-il~~G~l~~~g~~~~l~ 471 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||++ +|++|+++..|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999997656899999999999999999975 57999999999998875
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 4
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=383.00 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=194.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.+.++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 457999999999973 469999999999999999999999999999999999864 499999999998753
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....|+.+||+||++.+++. |+.||+.+.....+.. ....++++.++++.+++.+ .+..++++.+|||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 223467789999999998885 9999999865554433 2334567788899888731 13568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
++
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=379.98 Aligned_cols=223 Identities=24% Similarity=0.433 Sum_probs=192.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 457999999999973 469999999999999999999999999999999999987 699999999998842
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++. |++||+.+..+..+...+ ..++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 234567789999999998874 999999986544443222 23455677777775421 12568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+.++|+++.+++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998885
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 255 ~ 255 (271)
T PRK14238 255 S 255 (271)
T ss_pred c
Confidence 4
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=373.82 Aligned_cols=220 Identities=24% Similarity=0.446 Sum_probs=187.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999742 2369999999999999999999999999999999999999999999999998753 3445678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+..... ...+..+ .+.+.++.+ ++. ...++++.+||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcc--eeeccCCCcCCHHHHHHHHHHH
Confidence 8999999998887 69999998754321 1112111 234556655 564 3678889999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||+.+|+++||||||+|||+.+++.+++.|++..+++|||++||++++++. |||+++|++|+++..|+++++...++
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 999999999999999999999999999999987779999999999999986 99999999999999999999876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=376.06 Aligned_cols=220 Identities=27% Similarity=0.447 Sum_probs=191.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC---
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT--- 317 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~--- 317 (568)
-+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 468999999963 579999999999999999999999999999999999986 579999999998743
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC--chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK--GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
....+++.+||+||++.+++. |++||+.+....++.. .++.++.+.++++.+++.+ .+..++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 223467889999999998886 9999998764444332 2344566788999999952 0135788999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.+.+.|++.++|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999988764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=377.31 Aligned_cols=222 Identities=26% Similarity=0.418 Sum_probs=193.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
..++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+|+|+|+.+| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 36999999999973 4699999999999999999999999999999999999985 58999999998843
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ +|++||+.+....++. +..+..+.+.++++.+++.+ .+..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456778999999999998 8999999876544332 33344566788899998841 135788999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE-----CCEEEeecCH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-----DGSLQCIGNP 467 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~-----~G~l~~~g~~ 467 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987667999999999999999999999998 5999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++.+
T Consensus 239 ~~~~~ 243 (259)
T PRK14260 239 TQIFS 243 (259)
T ss_pred HHHhc
Confidence 99854
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=375.89 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=184.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999632 2569999999999999999999999999999999999999999999999998753 3345678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+... +....+..+ .+.++++.+ ++. ...++++.+||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999998876 699999987432 111111111 123445555 443 3567899999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+.+|+++||||||+|||+.+++.+++.|+++.+|+|||++||++++++ .|||+++|++|+++..|+++++.++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999998767999999999999996 5999999999999999999988765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=378.51 Aligned_cols=222 Identities=23% Similarity=0.403 Sum_probs=192.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++|+++|++|.|++ +++++|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 347999999999973 469999999999999999999999999999999999976 489999999998742
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++++||+||++.+++. |+.||+.+.....+.. .+..++++++++.+++.+ .+..++++.+||||||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred cccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 234567889999999988884 9999998865444332 233456777888888741 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE---------CCEEEe
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQC 463 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~---------~G~l~~ 463 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987667899999999999999999999998 899999
Q ss_pred ecCHHHHHH
Q 008362 464 IGNPKELKA 472 (568)
Q Consensus 464 ~g~~~~l~~ 472 (568)
.|+++++.+
T Consensus 240 ~~~~~~~~~ 248 (264)
T PRK14243 240 FDRTEKIFN 248 (264)
T ss_pred eCCHHHHHh
Confidence 999999865
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=373.90 Aligned_cols=222 Identities=27% Similarity=0.464 Sum_probs=192.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~- 317 (568)
.+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 47999999999973 569999999999999999999999999999999999875 5 59999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ .|++||+.+....++...+ ..++++.+.++.+++.. .+..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23456778999999999988 6999999886555443322 23456777888887631 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999988765
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=375.63 Aligned_cols=225 Identities=23% Similarity=0.402 Sum_probs=195.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC------eeCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------LDIR 316 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G------~~i~ 316 (568)
.+++.++|++|+|++ +.+++|+||++.+||+++|+||||||||||+++|+|+.+|++|+|.++| +++.
T Consensus 8 ~~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 357999999999973 5799999999999999999999999999999999999999997777666 4443
Q ss_pred C-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 317 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 317 ~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
. .....++.+||+||++.+++.+|++||+.+....++.. .++..+++.++++.+++.+ .+..++.+..||||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 2 33456788999999999999999999999875544432 3345567889999999852 024678999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|++++|||||+|||+.+++.+++.|.++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 242 ~ 242 (257)
T PRK14246 242 S 242 (257)
T ss_pred C
Confidence 3
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=413.56 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ..
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999998532 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.++.+||+||++.+++.+|++||+.+....+ + .+.++.+++++++++.+||. +..++++++||||||||++||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHH
Confidence 3568999999999999999999998754332 1 22334456788999999997 3689999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999986 4589999999999999999999999999999999987654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=412.85 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=195.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCCcH--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDM-- 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~~~-- 319 (568)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++| ++|+|.++|+++....
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999973 5699999999999999999999999999999999999996 8999999999985422
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+..++.+||+||++.+++.+|++||+.+....+ + .+.++..++++++++.+++. +..++++++||||||||++||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 234578999999999999999999998865432 2 23334556789999999996 478999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999986 4689999999999999999999999999999999987654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=377.23 Aligned_cols=222 Identities=24% Similarity=0.417 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
+.++++||+|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 47899999999973 5799999999999999999999999999999999999986 79999999998854
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 393 (568)
.....++.++|+||++.+++ +|++||+.+.....+ .+.++..+.+.++++.+++.+. +..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 23356788999999999888 799999987543322 2334445567788999998520 135788999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987656999999999999999999999999999999999998865
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=378.42 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=191.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------ceEEEECCeeCC
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--------SGTAYVQGLDIR 316 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--------~G~i~i~G~~i~ 316 (568)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999973 56999999999999999999999999999999999999998 999999999885
Q ss_pred C-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 317 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 317 ~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
. ...+.++.++|+||++.++..+|++||+.+..... +...++..++++++++.+++. +..++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT--ALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHH
Confidence 4 33455667999999987666689999998743211 111233456788999999996 4789999999999999
Q ss_pred HHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 392 RLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 392 rl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
|++|||||+ .+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 599999999999999999999999999986 44 8999999999999999999999999999
Q ss_pred EEeecCHHHHH
Q 008362 461 LQCIGNPKELK 471 (568)
Q Consensus 461 l~~~g~~~~l~ 471 (568)
++..|+++++.
T Consensus 233 i~~~g~~~~~~ 243 (272)
T PRK13547 233 IVAHGAPADVL 243 (272)
T ss_pred EEEecCHHHHc
Confidence 99999988763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=418.88 Aligned_cols=230 Identities=25% Similarity=0.355 Sum_probs=200.1
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
.++++++||+|.|+.+.+ ...+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999963110 012469999999999999999999999999999999999999999999999998854
Q ss_pred c----HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 318 D----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 318 ~----~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
. ....+++|||+||++ .+++.+||.||+.+....++. ..++.++++.++++.+||.. +..++++++||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~~LSgGqr 469 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQR 469 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHH
Confidence 2 123567899999997 589999999999886555443 23445678899999999952 368999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
|||+|||||+.+|++|||||||+|||+.++++++++|+++ ++ |.|||++|||++++..+||||++|++|++++.|+++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999999986 43 899999999999999999999999999999999999
Q ss_pred HHHHh
Q 008362 469 ELKAR 473 (568)
Q Consensus 469 ~l~~~ 473 (568)
++...
T Consensus 550 ~i~~~ 554 (623)
T PRK10261 550 AVFEN 554 (623)
T ss_pred HHhcC
Confidence 98653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=349.92 Aligned_cols=222 Identities=25% Similarity=0.456 Sum_probs=205.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
+.++++||.|+||. ..+|++|||+.++|+++.|+|.+||||||++|||.=+..|++|.|.++|+.+..
T Consensus 5 ~~l~v~dlHK~~G~------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhccc------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 46999999999984 679999999999999999999999999999999999999999999999998731
Q ss_pred --------cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 318 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 318 --------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
+.+++|.++|++||+.+||..||+.||+.- ....-|.++.+..++++.+|.++|+. +.++.++..||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~--ek~~~YP~~LSGG 156 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA--EKADAYPAHLSGG 156 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch--hhhhcCccccCch
Confidence 234678899999999999999999999865 33455788888999999999999997 4789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+||++|||||+.+|+++++|||||+|||+-..++.+.++++ .+|+|.+++||.|..|...+++++++++|.+-+.|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 999999999999999999999999999999999999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008362 468 KELKAR 473 (568)
Q Consensus 468 ~~l~~~ 473 (568)
+++...
T Consensus 237 ~qvf~n 242 (256)
T COG4598 237 EQVFGN 242 (256)
T ss_pred HHHhcC
Confidence 998654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=373.98 Aligned_cols=221 Identities=23% Similarity=0.347 Sum_probs=194.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
..+.+++++++|++ +.+++|+||++++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYGN------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeCC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 57999999999973 5799999999999999999999999999999999999986 79999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.++ .+|+.||+.+.....+. .++..++++++++.+++.+ .+..++++++||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2234577899999999888 48999999987554432 2334567889999999852 1134678899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE--------CCEEEeec
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV--------DGSLQCIG 465 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~--------~G~l~~~g 465 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988678999999999999999999999996 89999999
Q ss_pred CHHHHHH
Q 008362 466 NPKELKA 472 (568)
Q Consensus 466 ~~~~l~~ 472 (568)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9998865
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=369.34 Aligned_cols=219 Identities=22% Similarity=0.423 Sum_probs=184.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 3789999999963 2469999999999999999999999999999999999999999999999998753 344567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+.+||+||++.+++. |++||+.++.... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCccccc--CHhhcCCCcCCHHHHHHHHHH
Confidence 789999999988886 9999998753211 1111111 122333333 443 245677899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. |||+++|++|++...|+.+++.+++
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 9999999999999999999999999999999987679999999999999975 9999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=373.93 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=194.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~- 317 (568)
+.++++|++|+|++ +.+++|+||++++||++||+|+||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 36999999999973 46999999999999999999999999999999999999986 8999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
....+++.++|+||++.+++ +|++||+.+.....+. +..+..+++.++++.+++.+ .+..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456788999999998888 8999999886544443 23344567888999998842 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC-----CEEEeec
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD-----GSLQCIG 465 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~-----G~l~~~g 465 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++ |+++..|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 99999999999999999999999999999999999985 3 589999999999999999999999999 9999999
Q ss_pred CHHHHHH
Q 008362 466 NPKELKA 472 (568)
Q Consensus 466 ~~~~l~~ 472 (568)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14258 239 LTKKIFN 245 (261)
T ss_pred CHHHHHh
Confidence 9999865
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=433.80 Aligned_cols=217 Identities=26% Similarity=0.404 Sum_probs=192.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCCcHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~ 320 (568)
..++++||++.|+.+. +++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 3589999999996321 24679999999999999999999999999999999999987 789999999999842
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC----CCChhHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG----KYSGGMKRRL 393 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~----~LSgG~kqrl 393 (568)
..|+.+|||||++.+++.+||+||+.+.+.++. .+.++..++++++++.++|. +.+|+.++ +||||||||+
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME--SYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh--hhCCCeeCCCCCCCCHHHhhHH
Confidence 467889999999999999999999999887653 23445567899999999996 47888887 7999999999
Q ss_pred HHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHH-HHHhCCEEEEEECC-EEEeecCH
Q 008362 394 SVAISLIGNPK-VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE-AEALCDRLGIFVDG-SLQCIGNP 467 (568)
Q Consensus 394 ~la~Al~~~p~-lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e-~~~l~dri~il~~G-~l~~~g~~ 467 (568)
+||+||+.+|+ +++|||||+|||+.+++.+++.|+++ ++|+|||++||+++. +...|||+++|++| ++++.|++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99999999997 99999999999999999999999986 579999999999986 45789999999997 99999997
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=373.19 Aligned_cols=222 Identities=25% Similarity=0.371 Sum_probs=190.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-----CCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-----i~~- 317 (568)
++++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|++ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 36999999999973 468999999999999999999999999999999999999999999999987 543
Q ss_pred cHH----HhhcceEEEcCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 318 DMD----RIYTSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 318 ~~~----~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
... ..++.+||+||++. +++.+|+.||+.+... .......+..+.+.++++.+++.+ ...++.+++||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-TRIDDLPRAFSGGMQ 154 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-hhhhcCchhcCHHHH
Confidence 111 12467999999974 4566799999875322 111112234567889999999952 368999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.++++|++. + .|.|||++||+++++..+|||+++|++|+++..|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999885 4 3899999999999999999999999999999999998
Q ss_pred HHHH
Q 008362 469 ELKA 472 (568)
Q Consensus 469 ~l~~ 472 (568)
++..
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 8865
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=364.25 Aligned_cols=200 Identities=25% Similarity=0.412 Sum_probs=177.4
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--c---HHHh
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--D---MDRI 322 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~---~~~~ 322 (568)
++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4789999973 569999999999999999999999999999999999999999999999998642 1 1235
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||++|++.+++.+|++||+.+.....+....+..++++++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN--LKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999865555544455567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
|+++||||||+|||+.+++.+++.|++. ++|+|||++||+++.++ +|||+++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999986 45899999999999775 79999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=411.05 Aligned_cols=219 Identities=26% Similarity=0.381 Sum_probs=194.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-H
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-R 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~ 321 (568)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999998642 22 2
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh----hcCC---CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR----LKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~----l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
.++.+||+||++.+++.+|++||+.+... ..+. +.++..+++.++++.+||. +..++++++||||||||++
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK--VDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 34679999999999999999999986432 1121 2234556788999999996 4789999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999998764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=400.59 Aligned_cols=236 Identities=25% Similarity=0.397 Sum_probs=207.2
Q ss_pred CCCeEEEEeEEEEcCCCC-----CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC-
Q 008362 242 TSHAIISDNLRKIYPGRD-----GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI- 315 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~-----~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i- 315 (568)
..+.++++||+|.|+.++ ..+...|++||||++.+||++||+|++|||||||.|+|+|+.+|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 456799999999998532 12246899999999999999999999999999999999999999999999999873
Q ss_pred -CC-cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 316 -RT-DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 316 -~~-~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
.. ...+.|+++-++||++ .|.|.+||++++.-...+++.. ..+.++++.++++.++|.. ++.++++++||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-EFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-HHHhcCchhcCcchh
Confidence 21 2345677888888876 6999999999999887766533 4566678999999999984 689999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|++|++|||||.||+..+..+.++|++++ -|.|.|++||||+.++.+||||++|.+|++++.|+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999999999974 3999999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 008362 469 ELKARYGGSY 478 (568)
Q Consensus 469 ~l~~~~~~~~ 478 (568)
++.+...+.|
T Consensus 516 ~v~~~p~h~Y 525 (539)
T COG1123 516 KVFENPQHPY 525 (539)
T ss_pred HHhcCCCChH
Confidence 9887654443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=367.61 Aligned_cols=215 Identities=28% Similarity=0.431 Sum_probs=186.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~~ 321 (568)
.+.++|++++|++.+ ..+++++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HH
Confidence 467899999997531 12679999999999999999999999999999999999999 999999999998753 35
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHH-HHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEE-SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~~-~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.++.+||+||++.+++.+|++||+.+.....+. .......++++ .++.++++ +..++.+++||||||||+++||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT--RIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch--hhhcccccCcCHHHHHHHHHHH
Confidence 678899999999999999999999986554321 11222234555 89999996 3778999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCH-HHHHHhCCEEEEEECCEEEeec
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~-~e~~~l~dri~il~~G~l~~~g 465 (568)
||+.+|+++||||||+|||+.+++.+++++++. ++|+|+|++||++ +++..+|||+++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999986 4589999999999 6999999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=372.94 Aligned_cols=218 Identities=21% Similarity=0.292 Sum_probs=189.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEECCeeCCCcHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~~G~i~i~G~~i~~~~~ 320 (568)
.++++|++|.|+ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQAA-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEec-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 689999999993 3599999999999999999999999999999999999999 99999999998853 22
Q ss_pred HhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~kqrl~la~ 397 (568)
..++.+||+||++. +.+.+|+.+++.+.....+... .++++.++++.+++.+. ...++++.+||||||||++|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 4566899999877554444322 23678899999999631 1468999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999999999999999986 4 38999999999999999999999999999999999998865
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=375.54 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=192.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 358999999999973 4699999999999999999999999999999999999863 69999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++. |+.||+.+....++.. ...++.+.++++.+++.. .+..++++.+||||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 223457889999999988875 9999998765443322 223455677888888731 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE---------CCEEEe
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQC 463 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~---------~G~l~~ 463 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|+++.
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987668999999999999999999999998 899999
Q ss_pred ecCHHHHHH
Q 008362 464 IGNPKELKA 472 (568)
Q Consensus 464 ~g~~~~l~~ 472 (568)
.|+++++..
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 999999864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-46 Score=408.72 Aligned_cols=215 Identities=26% Similarity=0.451 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~ 322 (568)
++++++||+|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999988542 2222
Q ss_pred -hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 -r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++.+++.+|++||+.+.... .++.+++++++++.++|. +..++++++||||||||++|||||+.
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999875321 234456788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999986 4689999999999999999999999999999999998765
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=370.53 Aligned_cols=222 Identities=26% Similarity=0.458 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~-- 317 (568)
+++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999973 569999999999999999999999999999999999864 489999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++. |++||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 234567889999999999985 9999998764443322 2345677888999998842 1246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999877789999999999999999999999999999999999998543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=382.86 Aligned_cols=225 Identities=27% Similarity=0.443 Sum_probs=195.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
..+|+++|++++|.+. .+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~----~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999631 3569999999999999999999999999999999999986 579999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh-HHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~-~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
....+|+.+|||||++.+++ .|++||+.+.....+...++ .++.+.++++.++|.+ ++..++++.+|||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 23456889999999999886 69999999765444433332 2345678888888742 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++||||++.+|+++||||||+|||+.+++.+.+.|++..+++|||++||+++++..+||||++|++|++++.|+++++.
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998777899999999999999999999999999999999999986
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 4
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=368.34 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=180.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEECCeeCCCcHHHhhcceEEEcCCCC--CCCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL--LWETL 339 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~--l~~~l 339 (568)
+++|+||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... +..++.+||+||++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999988542 223368999999984 56778
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
|++||+.+.....+....+.++++.++++.+++.+. +..++++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 999999876554443334455678999999999620 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 419 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 419 ~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+++.+++.|++++ .|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999863 38999999999999999999999999999999999998864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=369.40 Aligned_cols=220 Identities=26% Similarity=0.476 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRP---DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCC---CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46899999997421 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+....+ ..++..+ .+.+.++.+ ++. ...++++.+||||||||++||+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccc--eeeccCCccCCHHHHHHHHHHH
Confidence 8999999998887 59999998753221 1111111 122333333 443 3567888999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++ .|||+++|++|+++..|+.+++....
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999999999999998767899999999999997 79999999999999999998886543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=373.67 Aligned_cols=227 Identities=24% Similarity=0.354 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCC---CCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---
Q 008362 245 AIISDNLRKIYPGR---DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~---~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--- 318 (568)
+|+++||+|.|++. .++.++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 68999999999731 000125799999999999999999999999999999999999999999999999987532
Q ss_pred -HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 319 -MDRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 -~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
....++.+||+||++ .+++..|+.|++.+... ..+....+..++++++++.+++.. ...++++.+||||||||++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh-hHhhCCCccCChHHHHHHH
Confidence 134577899999997 46778999999876433 223334444567899999999952 3678999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.+.++|+++. + |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999988753
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=360.93 Aligned_cols=201 Identities=29% Similarity=0.376 Sum_probs=180.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999998654455678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+++|++|++.+++.+|+.||+.+....++. +..++++++++.+|+. +..++++++||||||||++||+|++.+|+
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLA--GFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987655432 2346788999999996 36899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+++|||||+|||+.+++.++++|++. ++|+|||++||+++++++..+|++.+
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999986 46899999999999999977888666
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=366.57 Aligned_cols=212 Identities=25% Similarity=0.367 Sum_probs=183.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++|+++||+|.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 47999999999973 469999999999999999999999999999999999999999999999998854 33446
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+++. |++||+.+....++.. ...++++++++.+++.+ ...++++.+||||||||++|||||+.+
T Consensus 80 ~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 80 RQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred HhccEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 6789999999998875 9999998765444321 22456788999999952 367899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEE-CCEEEeecC
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV-DGSLQCIGN 466 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~-~G~l~~~g~ 466 (568)
|+++||||||+|||+.+++.+.++|++. + .|+|||++||++++++ .|||+++|+ ++..+.+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999986 3 4899999999999997 599999995 454455554
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=371.47 Aligned_cols=223 Identities=21% Similarity=0.358 Sum_probs=193.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCC-
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIR- 316 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~- 316 (568)
...|+++|++|+|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 346999999999973 4699999999999999999999999999999999999875 7999999998763
Q ss_pred --C--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhH
Q 008362 317 --T--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGM 389 (568)
Q Consensus 317 --~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~ 389 (568)
. .....++.+||+||++.+++. |++||+.+.....+.... ..++++.++++.+++.+ .+..++++.+|||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHH
Confidence 1 233567789999999999986 999999876544444332 23467788888888731 135678999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|++++.|+.++
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999999999999999999999999988
Q ss_pred HHH
Q 008362 470 LKA 472 (568)
Q Consensus 470 l~~ 472 (568)
+..
T Consensus 247 ~~~ 249 (265)
T PRK14252 247 IFI 249 (265)
T ss_pred HHh
Confidence 864
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=415.22 Aligned_cols=228 Identities=21% Similarity=0.339 Sum_probs=198.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC------
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR------ 316 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~------ 316 (568)
.++|+++||++.|+... +.+++++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCC--CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 34799999999996321 1257999999999999999999999999999999999999999999999997541
Q ss_pred ----C-cH---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCC
Q 008362 317 ----T-DM---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAG 383 (568)
Q Consensus 317 ----~-~~---~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 383 (568)
. .. .+.| +.|||+||++ .+++.+||+||+.+..+.+ +.+.++.++++.++++.+||.+ ....++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 11 1233 4799999997 6889999999999876653 5555666778999999999952 125789999
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+|||||||||+||+||+.+|++|||||||+|||+.++++++++++++. + |+|||++|||++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999999999999999863 4 89999999999999999999999999999
Q ss_pred EeecCHHHHHH
Q 008362 462 QCIGNPKELKA 472 (568)
Q Consensus 462 ~~~g~~~~l~~ 472 (568)
+..|+++++..
T Consensus 248 ~~~g~~~~~~~ 258 (623)
T PRK10261 248 VETGSVEQIFH 258 (623)
T ss_pred cccCCHHHhhc
Confidence 99999988754
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=363.23 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=185.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++|+++.|++.. +.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 78999999997421 125799999999999999999999999999999999999999999999999988531 124
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|+.||+.+...... ...++..+++.++++.+++. +..++++.+||||||||+++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG--DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999998765442 34445567789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.+|+++||||||+|||+.+++.+.++|++.. +++|||++||+++.. .+||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999853 489999999999864 68999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=394.41 Aligned_cols=237 Identities=24% Similarity=0.388 Sum_probs=210.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----ceEEEECCeeCCC--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----SGTAYVQGLDIRT-- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~----~G~i~i~G~~i~~-- 317 (568)
+.++++||++.|...++ ...||+||||++.+||++||+|.+||||||+.++|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~--~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCc--ceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 37999999999986522 357999999999999999999999999999999999999987 8999999998743
Q ss_pred --cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 318 --DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 --~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
...++| +.|+|+||++ .|.|-+|+.+.+.-..++++ .++++.++++.++|+.++|.+....++++++|||||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 223344 5799999996 57777999999988777765 45778889999999999998633335799999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|+.||+||+.+|++||+||||++||+..+.++.++|+++. .|.++|++|||++.+.++||||++|.+|++++.|++++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999863 59999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEE
Q 008362 470 LKARYGGSYVFTM 482 (568)
Q Consensus 470 l~~~~~~~~~l~~ 482 (568)
+.+++.+.|+-.+
T Consensus 242 i~~~p~hpYT~~L 254 (539)
T COG1123 242 ILSNPQHPYTRGL 254 (539)
T ss_pred HHhccCCcccHHH
Confidence 9999999997554
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=364.21 Aligned_cols=206 Identities=25% Similarity=0.446 Sum_probs=176.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++|.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999631 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc-----------CCCCChhHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ-----------AGKYSGGMKRRL 393 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~~LSgG~kqrl 393 (568)
.+||+||++.+++ .|+.||+.+..... ..+++.++++.+++.+ ..++. +.+||||||||+
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAPLA------DDERILRAAELAGVTD--FVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCCCC------CHHHHHHHHHHcCcHH--HHHhccccccceecCCCccCCHHHHHHH
Confidence 8999999998887 69999997643211 1235567788888752 44443 469999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||++.+|+++||||||+|||+.+++.+++.|++..+++|||++||+++++ ++|||+++|++|+++..|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999876569999999999987 589999999999997654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=366.84 Aligned_cols=220 Identities=20% Similarity=0.286 Sum_probs=188.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~~ 320 (568)
.+++++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 37999999999973 4699999999999999999999999999999999998 589999999999988542 22
Q ss_pred Hhhc-ceEEEcCCCCCCCCCCHHHHHHHHhhhc----CC---CchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHH
Q 008362 321 RIYT-SMGVCPQEDLLWETLTGREHLLFYGRLK----NL---KGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKR 391 (568)
Q Consensus 321 ~~r~-~ig~~~Q~~~l~~~lTv~e~l~~~~~l~----~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kq 391 (568)
..++ .++|+||++.+++.+|+.+++.+..... +. ...+..+++.++++.+++.+ ...++++. +|||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHHHH
Confidence 2222 5889999999999999999998754321 11 11233456788999999962 35678887 59999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~ 469 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+ |||+++|++|+++..|+++.
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999999986 4589999999999999887 99999999999999999874
Q ss_pred H
Q 008362 470 L 470 (568)
Q Consensus 470 l 470 (568)
+
T Consensus 239 ~ 239 (252)
T CHL00131 239 A 239 (252)
T ss_pred h
Confidence 4
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=367.03 Aligned_cols=198 Identities=32% Similarity=0.488 Sum_probs=175.4
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..... ..+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999999999998854221 2489999999999999999998
Q ss_pred HHhh--hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 008362 347 FYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424 (568)
Q Consensus 347 ~~~~--l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~ 424 (568)
+... ..+...++.++++.++++.+++. +..++++++||||||||++|||||+.+|+++||||||+|||+.+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 7532 22333344556788999999996 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 425 NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 425 ~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+.|++. + .|+|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999885 4 489999999999999999999999999999988876544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=375.16 Aligned_cols=224 Identities=24% Similarity=0.427 Sum_probs=192.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCC
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 316 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~ 316 (568)
...+|+++||++.|++ +.+|+++||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457999999999973 469999999999999999999999999999999999986 68999999999885
Q ss_pred C---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc------------CCCc-hhHHHHHHHHHHHcCCCC--CCcc
Q 008362 317 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK------------NLKG-PALTQAVEESLKSVNLFH--GGVA 378 (568)
Q Consensus 317 ~---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~------------~~~~-~~~~~~~~~~l~~~~L~~--~~~~ 378 (568)
. .....++.+||+||++.+++. |++||+.+..... +... ...++++.++++.+++.+ .+..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 234567889999999988884 9999999754322 1111 223566888999998841 1356
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE-EEEE
Q 008362 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL-GIFV 457 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri-~il~ 457 (568)
++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++.+++|||++||+++++..+|||+ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 889999999999999999999999999999999999999999999999999766799999999999999999997 5679
Q ss_pred CCEEEeecCHHHHHH
Q 008362 458 DGSLQCIGNPKELKA 472 (568)
Q Consensus 458 ~G~l~~~g~~~~l~~ 472 (568)
+|++++.|+++++.+
T Consensus 275 ~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 275 GGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999988754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=358.50 Aligned_cols=202 Identities=23% Similarity=0.272 Sum_probs=181.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++++++|++|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhh
Confidence 47999999999973 4699999999999999999999999999999999999999999999999988642 335
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.++|++|++.+++.+|++||+.+....++. ...+.++++++.+++. +..++++.+||||||||+++|||++.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 6799999999999999999999887655442 2345678899999996 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++++|||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999875 5689999999999999999999999864
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=371.10 Aligned_cols=218 Identities=21% Similarity=0.382 Sum_probs=185.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..++++|++|+|++ ++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 36999999999963 2569999999999999999999999999999999999999999999999998742 1123
Q ss_pred cceEEEcCCCCCC--CCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLW--ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 324 ~~ig~~~Q~~~l~--~~lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
+.+||+||++.+. ...+++|++.+... ..+....+.+++++++++.+||. +..++++.+||||||||++|||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHH
Confidence 4699999997652 23478888865311 11112233455678899999996 3789999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
||+.+|++++|||||+|||+.+++.+.++|++.+ +|+|||++||+++++..+|||++++ +|+++..|+++++.
T Consensus 156 aL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999864 5899999999999999999999777 89999999988763
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=372.17 Aligned_cols=213 Identities=23% Similarity=0.445 Sum_probs=188.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.. ....+|
T Consensus 2 ~i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 38899999999631 2469999999999999999999999999999999999997 78999999999854 455678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRR 392 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-----------LSgG~kqr 392 (568)
+.++||||++.+|+. |++||+..+.. .+ .+++.++++.+||. ++.++.+.. ||||||||
T Consensus 77 ~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~--~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 77 KAFGVIPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLK--SVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred hhEEEECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCH--HHHHhCcccccceecCCCCCCCHHHHHH
Confidence 899999999999985 99999975421 11 24577888899996 367777766 99999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||++.+|++++|||||+|||+.+++.+.+.|++..+++|||++||+++++.. ||||++|++|+++..|+++++.+
T Consensus 147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999999999999999999987779999999999999875 99999999999999999999977
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=367.16 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=184.8
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ 325 (568)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|+++.. .....++.
T Consensus 2 ~~~~l~~~----------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred cccccchh----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhh
Confidence 46777763 179999999999999999999999999999999999864 9999999999854 33455677
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC----
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---- 401 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~---- 401 (568)
+||+||++.+++.+|++||+.+.... +.+.++..++++++++.++|. +..++++++||||||||++||+||+.
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLD--DKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 99999998888889999999876322 223344466789999999996 47899999999999999999999997
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 ---NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ---~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 779999999999999999999999999864 6899999999999999999999999999999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=401.61 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=191.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 47999999999973 469999999999999999999999999999999999999999999999999853 2234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh--hcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR--LKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.++.+||+||++.+++.+|++||+.+... ..+ ....+.++++.++++.+++. +..++++.+||||||||++||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHHH
Confidence 56789999999999999999999987532 122 23344566789999999996 36789999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999986 4689999999999999999999999999999877653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=360.02 Aligned_cols=201 Identities=29% Similarity=0.415 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
+.++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------- 88 (224)
T cd03220 23 LGILGRKGEVGE------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------- 88 (224)
T ss_pred hhhhhhhhhcCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------
Confidence 678899999973 679999999999999999999999999999999999999999999999987531
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
..+...+++.+|++||+.+.....+....+.++++.++++.+++. +..++++++||||||||++|||||+.+|++
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG--DFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 111234456789999999876655544445556788899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++|++|++++.|
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999986 45899999999999999999999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=360.05 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=178.8
Q ss_pred eEEEEeEEEEcCCCCCCC-ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC--Ce--eCCC-c
Q 008362 245 AIISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GL--DIRT-D 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~-~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~--G~--~i~~-~ 318 (568)
+++++|++|.|+++.+.+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 478999999996321001 2469999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred HH---Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 319 MD---RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 ~~---~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
.. +. ++.+||+||++.+++.+|++||+.+.....+...++..+++.++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-RLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhhCCcccCCHHHHHHHH
Confidence 11 22 4579999999999999999999987654444444455667889999999963 2458899999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il 456 (568)
|||||+.+|++++|||||+|||+.+++.+.+.|++.+ +|+|||++||++++++.+|||++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999864 5899999999999999999999875
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=402.27 Aligned_cols=229 Identities=29% Similarity=0.444 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC-Cee---CCC-
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---IRT- 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~-G~~---i~~- 317 (568)
.++++++||++.|++.. .+.+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 45799999999996310 012569999999999999999999999999999999999999999999996 643 221
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---CcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~---~~~~~~~~~LSgG~kq 391 (568)
.....++++||+||++.+++.+|++||+.+...+ +.+.++.++++.++++.++|.+. +..++++.+|||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 1123456799999999999999999999875433 22333345678899999999631 2578999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|++++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999986 34 8999999999999999999999999999999999988
Q ss_pred HHHh
Q 008362 470 LKAR 473 (568)
Q Consensus 470 l~~~ 473 (568)
+.++
T Consensus 515 ~~~~ 518 (520)
T TIGR03269 515 IVEE 518 (520)
T ss_pred HHhh
Confidence 7654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=362.10 Aligned_cols=216 Identities=23% Similarity=0.455 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999963 2469999999999999999999999999999999999999999999999998854 3445677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+.... .+..+..+ .+.+.++.+ ++. ...++++.+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYD--TIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999999886 6999999875321 11111111 122333333 333 3467788999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+.++|++.++|+|||++||+.+++.. |||+++|++|+++..|+.+++..
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999987559999999999999976 99999999999999999988765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=403.80 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=193.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEEC------------
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQ------------ 311 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~------------ 311 (568)
|+++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999963 56999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeeCC-------C-c---HHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 008362 312 -----------GLDIR-------T-D---MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368 (568)
Q Consensus 312 -----------G~~i~-------~-~---~~~~r~~ig~~~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~ 368 (568)
|.++. . . ....|+.+||+||+ +.+++.+|++||+.+.....+.+.++.++++.++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33221 0 0 12346789999997 688899999999998665555555556678999999
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHH
Q 008362 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEA 446 (568)
Q Consensus 369 ~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~ 446 (568)
.+||. +..++++++||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++|||++++
T Consensus 155 ~~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 155 MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HcCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 99996 4789999999999999999999999999999999999999999999999999986 4 489999999999999
Q ss_pred HHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 447 EALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 447 ~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
..+|||+++|++|+++..|+++++..++
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999999999999999999998876653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=401.16 Aligned_cols=217 Identities=23% Similarity=0.441 Sum_probs=190.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCCc-H-HH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++||+|.|++ +++++|+||++++||++||+||||||||||+|+|+|+.+| ++|+|.++|+++... . ..
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 789999999973 5699999999999999999999999999999999999987 799999999998642 2 23
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.++.+||+||++.+++.+|++||+.+..... + ...++..++++++++.+++.+ ...++++++|||||||||+|||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA-DNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC-CcccCchhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998764332 1 223445567889999999963 2236789999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999986 468999999999999999999999999999999988754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=401.21 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=190.2
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHhhcc
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTS 325 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~r~~ 325 (568)
++|++|.|++ +++++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++.
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999973 5699999999999999999999999999999999999999999999999998532 2345678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+||+||++.+++.+||+||+.+... .++. +.++..++++++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID--IDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987432 2221 2334456788999999996 368999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999986 4689999999999999999999999999999999987664
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=387.73 Aligned_cols=217 Identities=25% Similarity=0.405 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~ 320 (568)
.+.++++|++|+||+ .+||+|+||++++|||+||+|.||||||||+|+|+|.++|++|+|.++|+.+.. ..+
T Consensus 6 ~~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 347999999999984 689999999999999999999999999999999999999999999999998853 344
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.....|+.++|+..|.|+|||.||+.+...... +.+++.++++.++|+.+++.. + .+.++++||.||||.|+||
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~-~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-D-PDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-C-hhhhhhhCCHHHHHHHHHH
Confidence 455789999999999999999999987544332 456788899999999999963 3 8999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||+..+++++|||||||.|++...+.+.+++++++ +|.+||++||.|+|+.++||||.||.||+.++.++.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999975 799999999999999999999999999999998873
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=359.64 Aligned_cols=208 Identities=20% Similarity=0.392 Sum_probs=178.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 3 IEFKNVSLRYRPN----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEEEecCCC----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 7899999999742 2469999999999999999999999999999999999999999999999998753 3445678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
.+||+||++.+++ .|++||+.+... .. .+++.+.++.+++.+ +...++++.+||||||||++|
T Consensus 79 ~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~l 150 (221)
T cd03244 79 RISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150 (221)
T ss_pred hEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHH
Confidence 8999999998887 599999975422 11 234455555555531 012357899999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||++++++. |||+++|++|+++..|+
T Consensus 151 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999987668999999999999986 99999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=352.96 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=169.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~~ 321 (568)
.+.++|++|.|+... .++.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 478999999998642 24679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.++|+||++.+++.+|++||+.+..... .++++.+||||||||++|||||+.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999998753210 356788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEE-EcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil-~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+|+++||||||+|||+.+++.++++++++ ++ +.|+|+ ++|+.+++..+||++++|++|+++..|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999986 33 566555 566679999999999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=354.28 Aligned_cols=197 Identities=27% Similarity=0.389 Sum_probs=177.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|+++.......+++
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999973 56999999999999999999999999999999999999999999999999876544556788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.++.... ..++++++++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLN--GFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCCh--hhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998864211 245678899999996 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+||||||+|||+.+++.+++.|++. ++|+|+|++||+.++....|+|++.+
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999886 46899999999999999999999776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=363.37 Aligned_cols=217 Identities=22% Similarity=0.337 Sum_probs=191.5
Q ss_pred eEEEEeEEEEcCCCC--------------CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 245 AIISDNLRKIYPGRD--------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~--------------~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
.|+++||+|+|.... ....+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 588999999986531 113467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 311 QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 311 ~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
+|. +++++|...+.+.+|+.||+.+.....+.+.++..+.++++++.+++. +..++++++||||||
T Consensus 84 ~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 84 NGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG--EFIYQPVKKYSSGMR 149 (264)
T ss_pred CCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHHH
Confidence 984 357788877888899999998765555555555566678889999996 478999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||++||+|++.+|+++||||||+|||+.+++.+++.+.+. ++|+|||++||+++++..+|||+++|++|++.+.|++++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999886 468999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 008362 470 LKARYG 475 (568)
Q Consensus 470 l~~~~~ 475 (568)
+..++.
T Consensus 230 ~~~~~~ 235 (264)
T PRK13546 230 VLPKYE 235 (264)
T ss_pred HHHHhH
Confidence 877643
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=353.49 Aligned_cols=202 Identities=22% Similarity=0.393 Sum_probs=174.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...+.
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCC----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999998753 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+|||||++.+++. |++||+.+.. ... .+++.+.++ + ++++.+||||||||+++|||++.+
T Consensus 81 ~~~i~~v~q~~~~~~~-tv~~~l~~~~---~~~----~~~~~~~l~---~------~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 81 RSSLTIIPQDPTLFSG-TIRSNLDPFD---EYS----DEEIYGALR---V------SEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HhhEEEEecCCcccCc-cHHHHhcccC---CCC----HHHHHHHhh---c------cCCCCcCCHHHHHHHHHHHHHhhC
Confidence 7889999999988874 9999997532 111 122334333 2 467899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+++||||||+|||+.+++.++++|++..+|+|+|++||+++++.. |||+++|++|++.+.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987679999999999999976 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=333.93 Aligned_cols=215 Identities=24% Similarity=0.383 Sum_probs=195.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----H
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~ 319 (568)
..|++++++|.-+... ....+|++|+|.|++||-+||+||+|||||||+-+++|+..|++|+|++.|+++..- .
T Consensus 5 ~ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 5 NIIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ceeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 3689999999998643 357899999999999999999999999999999999999999999999999998642 2
Q ss_pred HHhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.++| +++|+|||...|.|+||..||+.....++|-+..+..+...++|+.+||. +..+.++++||||+||||+||||
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg--~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG--KRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc--cccccCccccCchHHHHHHHHHH
Confidence 3344 68999999999999999999999999999876677778899999999997 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++..|++++.||||.+||...-+++.+++-.+ ..|.|.+++|||...+.+ |||.+-|.+|+++.
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 99999999999999999999999999999765 359999999999999887 99999999999975
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=339.84 Aligned_cols=222 Identities=27% Similarity=0.422 Sum_probs=201.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
++.+++++.+|++. ...+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|+|.++|..+..+-.
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga---- 74 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA---- 74 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----
Confidence 57789999999863 2569999999999999999999999999999999999999999999999999865432
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.-|+|||++.|+|-+|+.||+.|..+++|+++.+..+.+.+.+..+||. +..++++-+||||||||+.|||||+.+|+
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~--~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE--GAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc--cccccceEeecchHHHHHHHHHHhhcCcc
Confidence 2399999999999999999999999999999999899999999999997 47799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHHhcCCc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKARYGGS 477 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~~~~~~ 477 (568)
+++||||+++||.-.|+++.+++.++ + .|+.++++|||++|+.-+++|+++|+. ||++..-+++. .++|..|
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df-~rR~aag 228 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDF-ARRYAAG 228 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCH-HHHhhcC
Confidence 99999999999999999999999884 4 599999999999999999999999985 78988877763 3444433
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=403.37 Aligned_cols=228 Identities=22% Similarity=0.368 Sum_probs=195.6
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++..+ .+++.+++|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 357999999999963110 012569999999999999999999999999999999999984 89999999998853
Q ss_pred c-H---HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 318 D-M---DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 318 ~-~---~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
. . ...++++||+||++ .+++.+|+.||+.+....++ .+.++.++++.++++.++|.+ +..++++++|||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~ 430 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQ 430 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-HHHhcCCccCCHHH
Confidence 1 1 12467899999996 48889999999988654332 333445567889999999952 36799999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|++
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999986 33 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++.+
T Consensus 511 ~~~~~ 515 (529)
T PRK15134 511 ERVFA 515 (529)
T ss_pred HHHhc
Confidence 98854
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=360.94 Aligned_cols=220 Identities=20% Similarity=0.301 Sum_probs=185.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCC-cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~-~~~~ 321 (568)
+++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. ....
T Consensus 1 ~i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 4789999999973 46999999999999999999999999999999999995 6999999999998754 2222
Q ss_pred -hhcceEEEcCCCCCCCCCCHHHHHHHHh-hhc---C---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHH
Q 008362 322 -IYTSMGVCPQEDLLWETLTGREHLLFYG-RLK---N---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRR 392 (568)
Q Consensus 322 -~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~---~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqr 392 (568)
.++.++|++|++.+++.+|+.+++.... .+. . ....+..+.++++++.+++.+ +..++++. +||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHHHH
Confidence 3457999999999888888777765421 111 1 111233556788899999953 35677775 899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l 470 (568)
++||||++.+|++++|||||+|||+.+++.+.+.|++++ +|+|||++||++++++.+ ||++++|++|+++..|+++.+
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999998864 589999999999999988 899999999999999998865
Q ss_pred H
Q 008362 471 K 471 (568)
Q Consensus 471 ~ 471 (568)
.
T Consensus 234 ~ 234 (248)
T PRK09580 234 K 234 (248)
T ss_pred H
Confidence 4
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=361.23 Aligned_cols=210 Identities=20% Similarity=0.384 Sum_probs=179.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 321 (568)
..+++++|+++.|+++. ++.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....
T Consensus 9 ~~~l~~~~l~~~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred CceEEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 35799999999997421 2469999999999999999999999999999999999999999999999998753 3344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~-----~~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
.++.++|+||++.+++ .|++||+.+..... ...+. ...++++++.+ |+. +..++++.+||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYD--TEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHH
Confidence 5678999999998887 59999998643211 11111 11246778888 775 3678899999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
|||||+.+|+++||||||+|||+.+++.+++.+++..+++|||++||++++++. |||+++|++|++
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999999987667999999999999975 999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=400.53 Aligned_cols=224 Identities=21% Similarity=0.392 Sum_probs=192.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCeeCCCc--H
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTD--M 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~i~~~--~ 319 (568)
..+++++||+|.|+... ++.+++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++... .
T Consensus 257 ~~~l~~~~l~~~~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 257 EVILEVRNLTAWDPVNP---HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred CceEEEecCcccccccc---ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 34799999999995211 2469999999999999999999999999999999999998 5999999999988532 2
Q ss_pred HHhhcceEEEcCCC---CCCCCCCHHHHHHHHh--hhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 320 DRIYTSMGVCPQED---LLWETLTGREHLLFYG--RLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~--~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
+..++.+||+||++ .+++.+|+.||+.+.. ...+ .+.++.+++++++++.+++.. +..++++++|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-CCcccccccCCHHHHH
Confidence 34567899999985 5788899999998743 1221 123334567899999999952 3679999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..|+++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999999986 4699999999999999999999999999999999987664
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=399.92 Aligned_cols=227 Identities=19% Similarity=0.337 Sum_probs=194.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCCc
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~~ 318 (568)
++++++|+++.|++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 3799999999996311 125799999999999999999999999999999999999986 799999999998542
Q ss_pred -H---HHhh-cceEEEcCCCC--CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhH
Q 008362 319 -M---DRIY-TSMGVCPQEDL--LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 389 (568)
Q Consensus 319 -~---~~~r-~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~ 389 (568)
. ...| +.+||+||++. +++.+|++|++.+.... .+.+..+..++++++++.+||.+. +..++++++|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1 1233 57999999974 67778999998865433 244555566789999999999631 13589999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||++|||||+.+|+++||||||+||||.+++.++++|+++ ++ |+|||++||+++++..+||||++|++|+++..|++
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999986 34 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++..
T Consensus 242 ~~~~~ 246 (529)
T PRK15134 242 ATLFS 246 (529)
T ss_pred HHHhh
Confidence 88743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=420.96 Aligned_cols=227 Identities=22% Similarity=0.372 Sum_probs=193.2
Q ss_pred eEEEEeEEEEcCCCCC-------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeC
Q 008362 245 AIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDI 315 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~-------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i 315 (568)
.+..+||+...+.... ..++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988753211 1235799999999999999999999999999999999999763 789999999886
Q ss_pred CCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccC-----CCCCh
Q 008362 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQA-----GKYSG 387 (568)
Q Consensus 316 ~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~~LSg 387 (568)
.. ...++.+|||+|++.+++.+||+||+.+.+.++. .+.++..+.++++++.++|.+ .+|+.+ +.|||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~--~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN--LKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh--HhCCccCCCCCCCcCH
Confidence 42 3456789999999999999999999999876542 233445567899999999973 678876 58999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEEC-CEEEee
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCI 464 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~-G~l~~~ 464 (568)
||||||+||+||+.+|++++|||||+|||+.++..+++.|+++ ++|+|||+|||+++ ++..+|||+++|++ |++++.
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999986 46999999999998 57789999999996 899999
Q ss_pred cCH----HHHHHhcC
Q 008362 465 GNP----KELKARYG 475 (568)
Q Consensus 465 g~~----~~l~~~~~ 475 (568)
|++ +++.+.|.
T Consensus 1103 G~~~~~~~~~~~yF~ 1117 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFE 1117 (1470)
T ss_pred CCcccccccHHHHHH
Confidence 996 35555443
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=361.20 Aligned_cols=202 Identities=25% Similarity=0.437 Sum_probs=178.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 37999999999973 4699999999999999999999999999999999999999999999987 2
Q ss_pred cceEEEcCCCCCCCCC--CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETL--TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~l--Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
..+||+||++.+++.+ |+.+++.+.. +. ..+++.++++.+++. +..++++.+||||||||++||+||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAG--HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCCh--HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 4699999998887764 7888775421 11 134578899999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|+ |++++.|+++++.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999999999999986 34 8999999999999999999999996 5799999998874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=347.11 Aligned_cols=188 Identities=31% Similarity=0.543 Sum_probs=166.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCCcHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++|++|+|++..+...+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 488999999997411011256999999999999999999999999999999999999 9999999999998864 256
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.++||||++.+++.+|++||+.+..+.. +||||||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999997642110 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeec
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g 465 (568)
|++++|||||+|||+.+++.++++|++.+ +|+|||++||+++ ++..+|||+++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999864 5999999999996 788899999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=343.64 Aligned_cols=178 Identities=27% Similarity=0.509 Sum_probs=161.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++++|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.......++.
T Consensus 1 i~~~~~~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQ----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCC----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 4689999999742 136999999999999999999999999999999999999999999999999874333456778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++ .|++||+ +.+||||||||++||||++.+|++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998886 6999987 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+++.|++..+++|||++||++++++ .|||+++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999998767899999999999997 59999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=408.08 Aligned_cols=218 Identities=24% Similarity=0.455 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +...+
T Consensus 470 g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 470 GEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 469999999999863 2469999999999999999999999999999999999999999999999999965 67889
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|||++|++.||.. |++||+.+...- ...+++.++++..|..+ +........+||||||||+
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~------~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALGNPE------ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 9999999999999997 999999985321 11234444444444321 1234556678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+++|+|+|||||||+||+.+.+.+.+.|.+..+|+|+|++||+...+. .||||++|++|+++.+|+.+++.+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999886 5999999999999999999999987
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=397.23 Aligned_cols=215 Identities=20% Similarity=0.417 Sum_probs=187.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
.+++++|++|.|+ .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++... ...
T Consensus 264 ~~l~~~~l~~~~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 4799999999763 289999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCC---CCCCCCCCHHHHHHHHhhhc--------CC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 322 IYTSMGVCPQE---DLLWETLTGREHLLFYGRLK--------NL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 322 ~r~~ig~~~Q~---~~l~~~lTv~e~l~~~~~l~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
.++.+||+||+ ..+++.+|++||+.+....+ +. ..++.+++++++++.+++.. +..++++++|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-HSVNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC-CCccCccccCChHH
Confidence 56789999998 46889999999998743211 11 12233456789999999952 36899999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999999986 5699999999999999999999999999999987754
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=340.87 Aligned_cols=172 Identities=44% Similarity=0.818 Sum_probs=159.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886433456788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|+.||+. ||||||||++|||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEEEecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999974 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++|||||+|||+.+++.++++|++. ++|.|+|++||+++++..+|||+++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999986 4589999999999999999999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=351.30 Aligned_cols=198 Identities=27% Similarity=0.384 Sum_probs=176.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAE 73 (207)
T ss_pred EEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHh
Confidence 5899999999973 469999999999999999999999999999999999999999999999998743 2 2677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||++|++.+++.+|++||+.+.....+.. .+++.++++.+||. +..++++++||||||||++||||++.+|+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLA--PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCH--HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999998888999999998865544321 24578899999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++||||||+|||+.+++.+++.|++. ++|+|||++||++++++. |+++-+..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 99999999999999999999999985 569999999999999986 88877643
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=361.31 Aligned_cols=219 Identities=20% Similarity=0.305 Sum_probs=184.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|+++.|++. ++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....
T Consensus 18 ~~i~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCVRYENN----LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEEEeCCC----CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999998854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
++.+||+||++.+++. |++||+..... .......+ .+.+.++.+ ++. ...++++.+||||||||++|
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~--~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLD--AVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccC--cEeccCCCcCCHHHHHHHHH
Confidence 7889999999988875 99999864211 01111111 133444444 454 35677889999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||+.+|+++||||||+|||+.+++.+++++++..+++|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999999999999987779999999999999986 999999999999999999988653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=396.79 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=190.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCeeCCC--cHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~~i~~--~~~ 320 (568)
.+++++|+++.|++. +++.+++|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|.++|+++.. ...
T Consensus 256 ~~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCccccccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 479999999999421 024699999999999999999999999999999999999985 89999999998853 224
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 321 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 321 ~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--l~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..++++||+||+. .+++.+|++||+.+... .. +....+.+++++++++.+++.+ ...++++++||||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-ASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-CCccCccccCCHHHHHH
Confidence 5678899999995 58899999999987431 21 1222334567889999999952 35799999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
++|||||+.+|+++||||||+|||+.+++.++++++++ ++|+|||++|||++++..+|||+++|++|++++.++..
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999886 46999999999999999999999999999999877553
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=348.15 Aligned_cols=196 Identities=28% Similarity=0.396 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 468999999973 57999999999999999999999999999999999999999999999999886544455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|+.||+.++....+ .+ ++++.++++.+++. +..++++++||||||||++||||++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999988765443 11 34678899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
++|||||+|||+.+++.+++.|++. ++|+|||++||+..++ .|+|+..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 9999999999999999999999985 5689999999998654 4788754
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=342.25 Aligned_cols=173 Identities=32% Similarity=0.573 Sum_probs=159.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---HHHh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI 322 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~~ 322 (568)
++++|+++.|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 3456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.++|+||++.+++.+|++||+.+. ||||||||++|||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999998753 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
|++++|||||+|||+.++..++++|++. ++ |+|+|++||++++++.+||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999986 44 7999999999999999999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=393.96 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=186.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+|+++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 6999999999973 459999999999999999999999999999999999999999999999987743 334456
Q ss_pred cceEEEcCCCCC--C-C-----CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 324 TSMGVCPQEDLL--W-E-----TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 324 ~~ig~~~Q~~~l--~-~-----~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
+.+||+||++.+ + + .+|++|++.+. .+.+++++++++.++|. +..++++++||||||||++|
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGIT--ALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCH--hhhhCCcccCCHHHHHHHHH
Confidence 679999998643 1 1 47888887542 12346788999999996 47899999999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999986 45899999999999999999999999999999999988764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=341.76 Aligned_cols=174 Identities=24% Similarity=0.475 Sum_probs=159.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
++++++|++|+| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 3 ~~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 3 PVLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred cEEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH
Confidence 369999999987 79999999999999999999999999999999999999999999999998643 234
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED---LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 ~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.++.++|+||++ .+++.+|++||+.+... ||||||||++||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHH
Confidence 577899999984 58888999999987421 99999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++.+|+++||||||+|||+.+++.+++.+++. ++|+|||++||+++++..+||++++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999986 4589999999999999999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=374.05 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--CcHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~~ 321 (568)
+.++++|++|+|++ ..|.+||||+|++|||.||+|.||||||||+|||.|+++|++|+|+++|+.+. .+.+.
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46999999999983 78999999999999999999999999999999999999999999999999874 45677
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++..||++.||+.|+|.+||.||+.+...- ...+.++.+++++++.++.||+- ..++++.+||-|+||||.|-+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v--dp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV--DPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC--CccceeecCCcchhHHHHHHHH
Confidence 888999999999999999999999987642 12456678889999999999974 5799999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|..+|++|||||||+-|-|...+++++.++++ ++|+|||++||-++|+.++|||+.||.+|+++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999997 579999999999999999999999999999765443
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=325.42 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=201.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC--CC-----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RT----- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i--~~----- 317 (568)
.|+++|+++.||. .++|.||+|+.++||.+.|+||+|||||||+|.|.=+..|.+|+..|.|... ++
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 4899999999984 6799999999999999999999999999999999999999999999988643 22
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
...++|+++|+++|...|||.|||.|||.- ..+..|+++++.+.++.++|+++.|. +++|+.+-.|||||+||++||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~--~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK--PYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--cccccCceecccchhhhHHHH
Confidence 234678999999999999999999999865 56778999999999999999999997 599999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|||+.+|+++++||||++|||+-..++.++|+++. .|.|-+++||..+.+...+.|++-|++|++++.|+....
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999975 599999999999999999999999999999999997654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=341.51 Aligned_cols=220 Identities=25% Similarity=0.447 Sum_probs=203.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
||+++|++|+|+ ++.+++++|++|++|.+++++||||||||||+.+++.+.++++|+|+++|.++.. +.+.+.
T Consensus 1 MI~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 588999999998 4789999999999999999999999999999999999999999999999999964 566778
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHh--hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~--~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
+.+++.-|++.+-..+||+|-+.|+. .-+|...++.++.++++++.++|+ +..+++..+||||||||.-+|+.+++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~--~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE--DLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc--chHHHhHHhcccchhhhhhhheeeec
Confidence 88999999999999999999988742 235666778888999999999997 58999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+.++||||.++||......+++.++++ .+ |+||+++-||++.|..++|+|+-|++|+++..|+++++.+
T Consensus 153 dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999996 44 9999999999999999999999999999999999999753
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=380.20 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=188.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++||++.|+++ ..+.+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~---~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG---EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------- 88 (549)
T ss_pred cceeEEEEEEEecCCC---ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-------
Confidence 3479999999999752 135699999999999999999999999999999999999999999999999752
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++++...+.+.+|++||+.+.....+.+.++..+++.++++.+++. +..++++++||||||||++|||||+.+
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~--~~ld~~~~~LSGGQrQRVaLArAL~~~ 161 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG--KFIYQPVKTYSSGMKSRLGFAISVHIN 161 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 1223445677799999998866555555555566788899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|++++.|+++++...+
T Consensus 162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999999999999999986 46899999999999999999999999999999999999887654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=400.20 Aligned_cols=215 Identities=23% Similarity=0.416 Sum_probs=185.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||++.|.+ ++++|+|+||++++||.+||+||||||||||+++|+|++ |++|+|.++|+|+.. +.+.+|
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 5999999976642 356999999999999999999999999999999999999 999999999999965 567789
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||||||++.+|+. |++||+.++. ...+ +++++++++..++.+ +........+||||||||++
T Consensus 423 ~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 423 KHLSWVGQNPQLPHG-TLRDNVLLGN--PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hheEEecCCCcCCCc-CHHHHhhcCC--CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 999999999999997 9999999852 1122 244555555555421 12334456689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||++.+|+++|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.++
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhc
Confidence 999999999999999999999999999999999988889999999999988865 999999999999999999999765
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=335.35 Aligned_cols=222 Identities=26% Similarity=0.379 Sum_probs=203.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC-eeCCCc--HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDIRTD--MD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G-~~i~~~--~~ 320 (568)
..+.++||+.+|++ ..||+|+||++.+||.-+|+|||||||||++..|+|..+|+.|+++++| .|+... .+
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 46899999999985 6799999999999999999999999999999999999999999999999 888653 34
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..|..||--||.|..|+.+||+|||.+..+. ......+.+++++++|+..||. +.+++.++.||-||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~--~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG--DERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc--hhhhhhhhhhccchhhh
Confidence 4677899999999999999999999986433 2223345567899999999997 48999999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|.|++-++++|++|+||||++||-.....+.-++++.++++++|+++.|||+.+.++|+||.+|+.|.+.|.|+.+++.+
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 236 d 236 (249)
T COG4674 236 D 236 (249)
T ss_pred C
Confidence 4
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=402.22 Aligned_cols=218 Identities=24% Similarity=0.416 Sum_probs=191.7
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceEEEECCeeCCCcHHHhhc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++|++|.|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. ..++
T Consensus 70 ~~~~l~~~~~------~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~ 140 (659)
T PLN03211 70 KISDETRQIQ------ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILK 140 (659)
T ss_pred ccccccccCC------CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhcc
Confidence 3566777775 357999999999999999999999999999999999999885 9999999998742 3456
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcc-----cccCCCCChhHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVA-----DKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~~LSgG~kqrl~la 396 (568)
++||++|++.+++.+||+||+.+.+.++. .+.++.+++++++++.+||.+ .+ ++.+++||||||||++||
T Consensus 141 ~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK--CENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred ceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh--hcCceeCCCCCCCcChhhhhHHHHH
Confidence 79999999999999999999999776542 233445567899999999963 44 456778999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+||+.+|++++|||||+|||+.+++.+.+.|+++. +|+|||++||+++ ++.++||++++|++|+++..|+++++...+
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999864 6999999999998 688999999999999999999999998766
Q ss_pred C
Q 008362 475 G 475 (568)
Q Consensus 475 ~ 475 (568)
.
T Consensus 299 ~ 299 (659)
T PLN03211 299 E 299 (659)
T ss_pred H
Confidence 4
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=341.42 Aligned_cols=185 Identities=27% Similarity=0.442 Sum_probs=164.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCCcHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++|+++.|++.. .++.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG--GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNF 77 (192)
T ss_pred EEEEeeeEEEecCCC--CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHh
Confidence 589999999997421 1256999999999999999999999999999999999986 489999999999875 455
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.++|++|++.+++.+|++||+.+....+ +||||||||+++|||++.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------cCCHHHhHHHHHHHHHhcC
Confidence 678999999999999999999998642100 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHHhCCEEEEEEC-CEEEeec
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIG 465 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~-e~~~l~dri~il~~-G~l~~~g 465 (568)
|++++|||||+|||+.+++.+++.+++.+ +|+|||++||+++ ++...|||+++|++ |+++..|
T Consensus 127 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 127 PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999864 5899999999998 57889999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=387.93 Aligned_cols=223 Identities=25% Similarity=0.456 Sum_probs=192.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||++.|+.++ +.++++|+||+|++||++||+||||+||||+.++|-.++.|++|+|.+||+|+++ +...+
T Consensus 464 G~IeF~~VsFaYP~Rp---~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP---DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCCC---CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 4699999999999753 6789999999999999999999999999999999999999999999999999976 66778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHH-----HHHHHHcCCCC--CCcccccCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV-----EESLKSVNLFH--GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~l 395 (568)
|++||+|-|+|.||.. |++||+.+... ..+.+++...+ ++.+.. +++ +..-..+..+||||||||++|
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHh--CccccccccCCccccccchHHHHHHH
Confidence 9999999999999997 99999998654 33333332222 222222 222 123455666899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||||+.||+||||||.||+||.++...+.+.|.+..+|+|||++.|.+..++. ||+|+++++|++++.|+.+||.++.+
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCcc
Confidence 99999999999999999999999999999999998888999999999999986 99999999999999999999988653
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=344.34 Aligned_cols=196 Identities=22% Similarity=0.295 Sum_probs=173.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|+|++ +++++|+||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.......++
T Consensus 1 ml~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEEEeCC------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999988654456678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+++.+|++||+.+..... . ....+.++++.+++. +..++++.+||||||||++||||++.+|+
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLE--HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCc--hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999989999999998754321 1 134678899999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~ 454 (568)
++||||||+|||+.+++.+++.|++. ++|+|||++||+.+.+.. ||.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 99999999999999999999999986 468999999999988865 87643
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=380.21 Aligned_cols=216 Identities=26% Similarity=0.460 Sum_probs=189.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++.+|+++.|++ .+++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+.++ +...+|+
T Consensus 321 i~~~~l~~~y~~-----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 321 ISLENLSFRYPD-----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeecceEEecCC-----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 445599999985 2489999999999999999999999999999999999999999999999999876 5678999
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------CcccccCCCCChhHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--------GVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~--------~~~~~~~~~LSgG~kqrl~la 396 (568)
++++++|++.+|+. |++||+.++.. +..++++.++++..++.+- .........|||||+|||++|
T Consensus 396 ~i~~v~Q~p~lf~g-TireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 QISWVSQNPYLFAG-TIRENILLARP------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HeeeeCCCCccccc-cHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 99999999999998 99999998632 2234567777887777520 112233445999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+.+++++++||||++||.++.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.++-
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQ 545 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcC
Confidence 9999999999999999999999999999999999889999999999999876 9999999999999999999997653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=336.07 Aligned_cols=171 Identities=32% Similarity=0.591 Sum_probs=156.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 4689999999742 2469999999999999999999999999999999999999999999999998854 3445678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.++|++|++.+++. |++||+ ||||||||++|||||+.+|+
T Consensus 77 ~i~~~~q~~~~~~~-tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 77 HVGYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred heEEECCCCccccC-cHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 89999999988885 999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++||||||+|||+.+++.+++.+++.+ +|+|||++||++++++ .|||+++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 999999999999999999999999864 5899999999999985 7999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=342.70 Aligned_cols=186 Identities=25% Similarity=0.408 Sum_probs=164.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-H-HH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++... . ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGG------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeCC------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 468999999973 4699999999999999999999999999999999999 589999999999998652 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.++|+||++.+++.+|+++++ ++...+||||||||+++|||++.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH---------------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 345699999999999988988876 01225799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHH-hCCEEEEEECCEEEeecCHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~-l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|++++|||||+|||+.+++.++++|++.+ +++|||++||++++++. +|||+++|++|++.+.|+.+ +.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 999999999999999999999999999864 58999999999999998 79999999999999999554 44
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=402.93 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=187.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||+|+.. +.+.+|
T Consensus 451 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 451 AIEVDRVTFRYRPD----GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred eEEEEEEEEEcCCC----CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 59999999999642 3579999999999999999999999999999999999999999999999999975 677889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+++|||||++.+|++ |++||+.++.. .+ ++++.++++..++.+ +........+||||||||++
T Consensus 527 ~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 527 RQLGVVLQNGRLMSG-SIFENIAGGAP---LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred hccEEEccCCccCcc-cHHHHHhcCCC---CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 999999999999987 99999997522 12 345677777777642 01223345679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||++.+|+++|||||||+||+.+++++.+.|++. ++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999876 5899999999998865 999999999999999999999765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=394.86 Aligned_cols=217 Identities=26% Similarity=0.458 Sum_probs=192.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.+
T Consensus 337 ~~i~~~~v~f~y~~~----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred CeEEEEEEEEECCCC----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999875 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc----------ccCCCCChhHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD----------KQAGKYSGGMKRR 392 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~~LSgG~kqr 392 (568)
|+++||+||++.+|+. |++||+.++.. +..++++.++++.+++.+ ..+ ....+||||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~--~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEK--LLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHH--HHcCccccCchhcCCCCCCCHHHHHH
Confidence 8999999999999986 99999987531 123456788888888852 333 2566799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||++.+|++++|||||++||+.+++.+.+.+.+..+++|+|++||+++.+.. ||||++|++|++++.|+.+++.+
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988789999999999999875 99999999999999999999976
Q ss_pred hc
Q 008362 473 RY 474 (568)
Q Consensus 473 ~~ 474 (568)
+.
T Consensus 563 ~~ 564 (574)
T PRK11160 563 QQ 564 (574)
T ss_pred cC
Confidence 54
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=340.24 Aligned_cols=177 Identities=30% Similarity=0.579 Sum_probs=160.9
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ 325 (568)
+++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 46899999973 469999999999999999999999999999999999999999999999999854 34455677
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+|| +++.+++. +..++++.+||||||||++||||++.+|++
T Consensus 75 i~~~~q----------------------------------~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 75 IAYVPQ----------------------------------ALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HhHHHH----------------------------------HHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999 67788886 367889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+.++|++.+ + |+|||++||+++++..+|||+++|++|++...|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999864 4 899999999999999999999999999987643
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=342.16 Aligned_cols=180 Identities=28% Similarity=0.497 Sum_probs=158.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHHhhcceEEEcCCC--CCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQED--LLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~~r~~ig~~~Q~~--~l~~~ 338 (568)
+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.+||+||++ .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA- 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-
Confidence 569999999999999999999999999999999999999999999999998842 2234567899999997 3554
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
.|++||+.+.....+.+.++..++++++++.++|. +..++++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 69999999865444444455566789999999996 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCceEEEEcCCHHHH
Q 008362 419 SRNNLWNVVKRA-KQGRAIILTTHSMEEA 446 (568)
Q Consensus 419 ~r~~i~~~l~~~-~~g~tiil~tH~~~e~ 446 (568)
+++.++++|++. ++|+|||++||+++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999986 4689999999998764
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=334.82 Aligned_cols=170 Identities=29% Similarity=0.619 Sum_probs=155.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++|+|+++ +..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 4689999999742 1369999999999999999999999999999999999999999999999998753 3345577
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++ .|++||+ ||||||||++||||++.+|+
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 8999999998887 5999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++||||||+|||+.+++.+++++++.++++|||++||++++++. ||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999987668999999999999988 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=404.38 Aligned_cols=217 Identities=23% Similarity=0.393 Sum_probs=187.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.|+.. +.+.+
T Consensus 476 ~~I~~~~vsf~y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 476 GYVELRNITFGYSPL----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CeEEEEEEEEecCCC----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 369999999999742 3579999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.++.. . ..++++.++++..++.+ +........+||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~--~----~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--T----IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC--C----CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 1 12345566666666531 1123345567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++++.+.+++ .++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999976 58999999999998875 999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 702 ~ 702 (710)
T TIGR03796 702 G 702 (710)
T ss_pred C
Confidence 3
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=387.85 Aligned_cols=215 Identities=25% Similarity=0.415 Sum_probs=187.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
+.++++|+++ .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .+.
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4789999974 269999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--l~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
.++++||+||++ .+++.+|+.||+.+... .. + .+.++.+++++++++.+++.. +..++++++||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-PSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-CCccCchhhCCHHHHHH
Confidence 567899999996 58889999999987421 11 1 222344567889999999952 36899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..|+++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999999887654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=394.72 Aligned_cols=219 Identities=21% Similarity=0.394 Sum_probs=188.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++. ++++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 341 ~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGK----EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCC----CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 59999999999742 3579999999999999999999999999999999999999999999999999865 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+.+||+||++.+|+. |++||+.++. +.+..+++++++++.+++.+ +........+||||||||++
T Consensus 417 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hhceEEccCceeecc-hHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 999999999999986 9999998742 11112345666666666431 01223344679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||||+.+|++++||||||+||+.+.+.+.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999998878999999999998776 59999999999999999999997753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=401.29 Aligned_cols=220 Identities=24% Similarity=0.440 Sum_probs=190.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +.+.+
T Consensus 462 ~~I~~~~vsf~Y~~~----~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.+... .. .++++.++++..++.+ +........+||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP--YA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC--CC----CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999999997 99999987421 11 2345566666665531 1223445568999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++.+.+.+++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999998878999999999999875 6999999999999999999999765
Q ss_pred cC
Q 008362 474 YG 475 (568)
Q Consensus 474 ~~ 475 (568)
-.
T Consensus 690 ~~ 691 (694)
T TIGR03375 690 LR 691 (694)
T ss_pred hh
Confidence 43
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=332.00 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=193.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+|+++||+.+-.+ +..++++||++++||+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ...+..
T Consensus 1 mi~a~nls~~~~G------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEeec------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 5889999999874 679999999999999999999999999999999999999999999999999865 445556
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++-+++||+..+-...||+|-+.++..-.+...+ +..+.++++|...++. .++.+...+|||||||||.+||.|++
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~--~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--GLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh--hhhccchhhcCchHHHHHHHHHHHHH
Confidence 7789999998875556999999986554432222 4555688999999997 48999999999999999999999964
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 ------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ------~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++++++||||||.||...+..+.++.++. ++|..|+.+-||++.+..+||||++|++||+++.|+|++..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45689999999999999999999999996 67999999999999999999999999999999999998864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=404.29 Aligned_cols=221 Identities=29% Similarity=0.529 Sum_probs=192.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+.++ +..+|+|+||+|++||+++|+|||||||||++++|.+++.|++|+|+++|.|++. +.+.+
T Consensus 349 g~ief~nV~FsYPsRp---dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP---DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred cceEEEEEEecCCCCC---cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 4699999999999753 5789999999999999999999999999999999999999999999999999976 67788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-------~--~~~~~~~~~~LSgG~kqrl 393 (568)
|++||.|.|+|.||.. |++||+.+.. + +..+++++++.+..+.. + +.....+..+||||||||+
T Consensus 426 r~~iglV~QePvlF~~-tI~eNI~~G~-----~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRI 498 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFAT-TIRENIRYGK-----P-DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRI 498 (1228)
T ss_pred HhhcCeeeechhhhcc-cHHHHHhcCC-----C-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHH
Confidence 9999999999999885 9999999742 1 12233444444433321 0 1233444556999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+++++.+.+.|.+..+|+|-|+++|++..+.. +|+|++|++|++++.|+++||.+.
T Consensus 499 AIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 499 AIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988 999999999999999999999877
Q ss_pred cC
Q 008362 474 YG 475 (568)
Q Consensus 474 ~~ 475 (568)
-|
T Consensus 578 ~G 579 (1228)
T KOG0055|consen 578 GG 579 (1228)
T ss_pred cc
Confidence 53
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=393.33 Aligned_cols=216 Identities=19% Similarity=0.331 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|++ ++++++|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +.+.+
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 35999999999973 2469999999999999999999999999999999999999999999999999965 56788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|||+||++.+|++ |++||+.++. ..+ ++++.++++.+|+.+ +........+||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999998 9999999853 122 345667777776541 0122344567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|++++||||||+||+.+.+.+.+.|++..+++|+|++||+++... .||+|++|++|++++.|+++++.++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999998876 4999999999999999999999765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=386.22 Aligned_cols=216 Identities=21% Similarity=0.390 Sum_probs=186.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
..++++|++. +.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.. ....
T Consensus 256 ~~l~~~~~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 325 (501)
T PRK11288 256 VRLRLDGLKG----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325 (501)
T ss_pred cEEEEecccc----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHH
Confidence 3588899872 138999999999999999999999999999999999999999999999998853 2334
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhhhc----C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQED---LLWETLTGREHLLFYGRLK----N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~----~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
.++.+||+||++ .+++.+|+.||+.+..... + .+..+.+++++++++.+++.+ +..++++.+||||||||
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQK 404 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc-CCccCccccCCHHHHHH
Confidence 567899999986 4889999999998643211 1 112233457889999999942 36899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|+||+||+.+|+++||||||+|||+.++++++++|+++ ++|.|||++|||+++++.+|||+++|++|++++.|++++.
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999999887653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=365.31 Aligned_cols=189 Identities=29% Similarity=0.506 Sum_probs=171.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH
Q 008362 282 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 361 (568)
Q Consensus 282 LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~ 361 (568)
|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..++++||+||++.+++.+|++||+.+..+.++.+.++.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999999999999999985432 23578999999999999999999999876665555555567
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEE
Q 008362 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILT 439 (568)
Q Consensus 362 ~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~ 439 (568)
+++++++.++|. +..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++
T Consensus 80 ~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 80 RVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 889999999996 4789999999999999999999999999999999999999999999999999986 33 8999999
Q ss_pred cCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 440 THSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 440 tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+++++..+|||+++|++|+++..|+++++.++
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=400.07 Aligned_cols=219 Identities=24% Similarity=0.460 Sum_probs=186.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+++. ++++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.. +.+.+
T Consensus 477 ~~I~~~nVsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP---DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3599999999997431 3579999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|+|+||++.+|+. |++||+.++.. ..+ ++++.++++..++.+ +........+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 8999999999999986 99999987521 111 345666777766531 0123344567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+.+.+.+ ....+++|+|++||+++.++. ||+|++|++|++++.|+++++.++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999999999998 333468999999999998865 999999999999999999999876
Q ss_pred cC
Q 008362 474 YG 475 (568)
Q Consensus 474 ~~ 475 (568)
.+
T Consensus 704 ~~ 705 (711)
T TIGR00958 704 QG 705 (711)
T ss_pred CC
Confidence 44
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=374.31 Aligned_cols=218 Identities=26% Similarity=0.452 Sum_probs=194.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++||+++|++. +.++|+|+||++++||-++|+|++||||||++++|+|.++|++|+|.++|.++.. +.+++|
T Consensus 336 ~l~~~~vsF~y~~~----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccceeecCCC----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 69999999999863 3579999999999999999999999999999999999999999999999999975 445688
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+.+++++|...+|.+ |+++||.+.. ++..++++.++++.+||++ ....+.....||||||||++
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 999999999999998 9999999852 2234567788888888853 01344556789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+|++|.+++||||||.||||...+++.+.+.+..+|||+|++||++..++. ||||++|++|++++.|+++++..+.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLANN 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhccc
Confidence 999999999999999999999999999999999988889999999999999986 9999999999999999999997743
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=343.92 Aligned_cols=194 Identities=32% Similarity=0.510 Sum_probs=169.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCC--CCCHHHHHHHHh
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE--TLTGREHLLFYG 349 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~--~lTv~e~l~~~~ 349 (568)
|++++||++||+|+||||||||+++|+|+.+|++|+|.++|+++. ..++++||+||++.++. .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578899999999999999999999999999999999999998763 34678999999987643 479999998742
Q ss_pred hh----cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 350 RL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 350 ~l----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
.. .+....+.++++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLT--ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1112223446788999999996 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 426 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.|++++ +|+|||++||+++++..+|||++++ +|+++..|+++++.+
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 999864 6999999999999999999999999 899999999888744
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=383.90 Aligned_cols=216 Identities=20% Similarity=0.374 Sum_probs=185.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-H
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-D 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~ 320 (568)
..+++++|+++ .+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... . .
T Consensus 266 ~~~l~~~~l~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 266 APVLTVEDLTG-----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred CceEEEeCCCC-----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 34799999983 159999999999999999999999999999999999999999999999988542 2 2
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 321 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 321 ~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
..++.+||+||++ .+++.+|+.||+..... .. .....+.+++++++++.+++.. +..++++++|||||||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-CCccCccccCCcHHHHHHH
Confidence 3456899999984 58889999999864311 11 1112233456889999999952 3689999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|||||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999987654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=381.69 Aligned_cols=216 Identities=20% Similarity=0.369 Sum_probs=184.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~ 320 (568)
..+|+++|+++.| +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .+
T Consensus 248 ~~~i~~~~l~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 248 EVILEVRNLTSLR--------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred CcEEEEeCccccc--------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 3479999999974 2499999999999999999999999999999999999999999999999988542 23
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHH-----HHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 321 RIYTSMGVCPQED---LLWETLTGREHL-----LFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 321 ~~r~~ig~~~Q~~---~l~~~lTv~e~l-----~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
..++.+||+||++ .+++++|+.+|. .+.....+. +..+.++.+.++++.+++.+ +..++++.+|||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-PGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-CCcccccccCCcHHHH
Confidence 4567799999985 478889888773 322222222 23344567888999999952 3579999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|++||||++.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..++.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 999999999999999999999999999999999999886 4699999999999999999999999999999976654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=398.24 Aligned_cols=218 Identities=21% Similarity=0.376 Sum_probs=187.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+. ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.|+.. +.+.+
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 35999999999963 2569999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.++.. ...+ ++++.++++..++.+ +........+||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999998522 1122 234555555555421 1223455678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++.+.+.|++. +|+|+|++||+++.+. .||||++|++|++++.|+.+++.++
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999875 5899999999999875 5999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 699 ~ 699 (708)
T TIGR01193 699 N 699 (708)
T ss_pred C
Confidence 3
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=387.54 Aligned_cols=218 Identities=26% Similarity=0.512 Sum_probs=188.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|+++.|++ ++++++|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.|++. +.+.+|
T Consensus 328 ~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 328 SIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred eEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4999999999974 3679999999999999999999999999999999999999999999999999976 677889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
++||++||++.||.. |++||+.++..- .+.++..+.++ +.++.+ |++ .........||||||||++||
T Consensus 403 ~~I~~V~Qd~~LF~~-TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~d--t~vge~G~~LSgGQrQrlaiA 477 (567)
T COG1132 403 KRIGIVSQDPLLFSG-TIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYD--TIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HhccEEcccceeecc-cHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCccccc--ceecCCCccCCHHHHHHHHHH
Confidence 999999999999995 999999985321 22233322222 223333 232 234455568999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||++.+|++++||||||+||+.+.+.+.+.+.+..+|||+++++|.++.+.. ||+|++|++|++++.|++++|.++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999999987788999999999999988 999999999999999999999876
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=382.94 Aligned_cols=220 Identities=28% Similarity=0.511 Sum_probs=187.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. ++++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+..
T Consensus 315 ~~i~~~~v~~~y~~~----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999865 45678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
|+.+||+||++.+|+. |++||+.++.. ..+.++..+ ..++.++.+ |++ ...++...+||||||||++|
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYD--TVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc--cccCCCcCCCCHHHHHHHHH
Confidence 8999999999999987 99999986431 122222221 123444444 443 34567788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||++.+|+++||||||+|||+.+++.+.+.+++.. +|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999999874 6899999999999875 6999999999999999999988653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=344.85 Aligned_cols=199 Identities=27% Similarity=0.452 Sum_probs=179.5
Q ss_pred CeEEEEeEEEEcCCCCC--CC-ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH
Q 008362 244 HAIISDNLRKIYPGRDG--NP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~--~~-~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~ 320 (568)
..++++||+|.|..+.+ +. ...|++||||+|++||++||+|.||||||||-|+|+|+++||+|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46999999999975321 11 248999999999999999999999999999999999999999999999999864321
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++..+++.++|+.+|+.. +..++++++|||||+||++|||||+
T Consensus 82 -----------------------------------~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -----------------------------------KEERRERVLELLEKVGLPE-EFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -----------------------------------hhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchhhhhHHHHHHHh
Confidence 3445678999999999974 7899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~ 478 (568)
.+|+++++|||+|+||...+.++.+++++++ .|.|.+++|||+..+..+||||++|..|++++.|+.+++.....+.|
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY 205 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence 9999999999999999999999999999864 49999999999999999999999999999999999999998777766
Q ss_pred E
Q 008362 479 V 479 (568)
Q Consensus 479 ~ 479 (568)
+
T Consensus 206 T 206 (268)
T COG4608 206 T 206 (268)
T ss_pred H
Confidence 5
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=386.45 Aligned_cols=219 Identities=21% Similarity=0.357 Sum_probs=185.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++++|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+..|
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999974 2468999999999999999999999999999999999999999999999999865 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+.+||+||++.+++. |++||+.++.. ..+.++..+..+ +.+..+ |++ ...++...+||||||||++||
T Consensus 409 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~--t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 409 KSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred hheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccc--chhcCCCCCCCHHHHHHHHHH
Confidence 999999999999975 99999987521 122222222211 122222 232 245567788999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+.+|+++||||||+|||+.+++.+++.|++..+++|+|++||+++++.. ||||++|++|++++.|+.+++.++.
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999999988789999999999999965 9999999999999999999997754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=382.04 Aligned_cols=208 Identities=22% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++|++|+|++ +++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 1 ml~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------E 64 (530)
T ss_pred CEEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------C
Confidence 4789999999973 56999999999999999999999999999999999999999999999873 3
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-h----------cCCC---------------------chhHHHHHHHHHHHcCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGR-L----------KNLK---------------------GPALTQAVEESLKSVNL 372 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-l----------~~~~---------------------~~~~~~~~~~~l~~~~L 372 (568)
.+||+||++.+++.+|++||+.+... . .+.+ ..+.++++.++++.+|+
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999986321 0 0000 01234568889999999
Q ss_pred CCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 373 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 373 ~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
.+ ...++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+.++|++ .|.|||++|||++++..+|||
T Consensus 145 ~~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 145 PE-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred Ch-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcce
Confidence 63 234578999999999999999999999999999999999999999999999974 489999999999999999999
Q ss_pred EEEEECCEE-EeecCHHHHH
Q 008362 453 LGIFVDGSL-QCIGNPKELK 471 (568)
Q Consensus 453 i~il~~G~l-~~~g~~~~l~ 471 (568)
+++|++|++ .+.|++++..
T Consensus 222 i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 999999999 4789887653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=366.43 Aligned_cols=215 Identities=24% Similarity=0.471 Sum_probs=191.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|+. ++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|+|||.|+.. ..+.+
T Consensus 350 ~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHh
Confidence 35999999999984 3569999999999999999999999999999999999999 99999999999975 67789
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+.|||+||+..||++ |+.+|+.++. .. ...+++.++.++.|+.+ ......+...|||||||||
T Consensus 424 R~~Ig~VPQd~~LFnd-TIl~NI~YGn-~s-----as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFND-TILYNIKYGN-PS-----ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hhheeEeCCcccccch-hHHHHhhcCC-CC-----cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 9999999999999998 9999999742 21 22355666777777753 1124556668999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||++.||+++++|||||.||.++.+++.+.+.+...|+|+|++-|+++.+.. ||+|+++++|++++.|+.+++..
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999999997789999999999999987 99999999999999999999977
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=323.66 Aligned_cols=159 Identities=30% Similarity=0.542 Sum_probs=147.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HHhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~~r 323 (568)
++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . +..+
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 468999999973 4699999999999999999999999999999999999999999999999998643 2 3456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+|| ||||||||+++|||++.+|
T Consensus 75 ~~i~~~~q-----------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 75 AGIAMVYQ-----------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred cCeEEEEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 78999999 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++++|||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999986 468999999999999999999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=394.18 Aligned_cols=219 Identities=26% Similarity=0.478 Sum_probs=188.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++.. +.+.+
T Consensus 454 ~~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 454 GAITFENIRFRYAPD----SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.+... ..+ ++++.++++..++.+ +....+...+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 112 234444444444321 1234556778999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++||||||+|||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 9999999999999999999999999999999999988789999999999999875 999999999999999999999765
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 682 ~ 682 (694)
T TIGR01846 682 Q 682 (694)
T ss_pred C
Confidence 3
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=387.25 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=186.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++ ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999973 2459999999999999999999999999999999999999999999999999965 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++|+|+||++.+|++ |++||+.++. ...+ ++++.++++.+++.+ +........+||||||||++
T Consensus 409 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 409 RNIAVVFQDAGLFNR-SIEDNIRVGR--PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred hheEEEecCcccccc-cHHHHHhcCC--CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 999999999999986 9999998742 1122 234555555555421 11233445679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+.+|++++||||||+||+.+++.+.+.|++..+++|+|++||+.+.+. .||||++|++|++++.|+.+++.++
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999999999999988877999999999998875 5999999999999999999999765
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=336.68 Aligned_cols=193 Identities=22% Similarity=0.390 Sum_probs=159.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++||+|+|+++.+ ..+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------S 67 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------E
Confidence 468999999974200 003699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC---------CCCcccccCCCCChhHHHHHHHH
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF---------HGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~---------~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+||+||++.+++ .|++||+.+.... ..+ +..+.++.+++. .+...++++.+||||||||++||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF---DEE----RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc---CHH----HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 999999999885 6999999875332 111 122222222221 01245677899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~-l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
||++.+|++++|||||+|||+.+++.+.+. +++. ++|+|||++||+++++.. |||+++|++|+
T Consensus 140 ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999984 5655 458999999999999998 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=384.39 Aligned_cols=218 Identities=18% Similarity=0.372 Sum_probs=187.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|+.. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+|
T Consensus 313 ~I~~~~v~~~y~~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQT----DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCC----CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 59999999999742 3569999999999999999999999999999999999999999999999999864 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+.+||+||++.+|+. |++||+.++.. ..+ +++++++++..++.+ +...+....+||||||||++
T Consensus 389 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 389 SRLAVVSQTPFLFSD-TVANNIALGRP--DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred hheEEEccCCeeccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 999999999999986 99999987421 112 234555566555431 12334556789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||++.+|+++||||||+|||+.+++.+++.|++..+|+|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 462 lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999998878999999999998886 49999999999999999999997654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=379.82 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=183.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 47999999999973 46999999999999999999999999999999999999999999999873
Q ss_pred cceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
+.+||+||++. +++.+|++||+.+... . ...+++++++++.+++.. +..++++++||||||||++||+|++.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCCh-hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999864 6677999999875321 1 122456888999999942 36899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHHhc
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKARY 474 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~~ 474 (568)
+|+++||||||+|||+.+++.+++.|++. +.|||++|||++++..+|||+++|++|+++ +.|+++++.+..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999886 359999999999999999999999999998 889998887653
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=381.21 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=180.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++|+++||+|.|++ ++++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------- 69 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 47999999999972 256999999999999999999999999999999999999999999998751
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCc----------------------hhHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKG----------------------PALTQAVEESL 367 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~-------------~~~~----------------------~~~~~~~~~~l 367 (568)
..+||+||++.+++.+|+.||+.+... ++ +... .+..+++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999986421 10 1110 01245678899
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 368 ~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
+.+|+. ..++++++|||||||||+||+||+.+|+++||||||+|||+.+++.+.++|++.. .|||++||+++++.
T Consensus 150 ~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~ 224 (556)
T PRK11819 150 DALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLD 224 (556)
T ss_pred HhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 999994 3689999999999999999999999999999999999999999999999998864 59999999999999
Q ss_pred HhCCEEEEEECCEEE-eecCHHHH
Q 008362 448 ALCDRLGIFVDGSLQ-CIGNPKEL 470 (568)
Q Consensus 448 ~l~dri~il~~G~l~-~~g~~~~l 470 (568)
.+||||++|++|+++ ..|+.++.
T Consensus 225 ~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeCCEEEEecCCHHHH
Confidence 999999999999986 77887764
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=338.07 Aligned_cols=200 Identities=21% Similarity=0.310 Sum_probs=165.3
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHH
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR 321 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~ 321 (568)
.+.|+.+.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 57899999974 25699999999999999999999999999999999999999999999999887431 123
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 392 (568)
.|+.+||+||++.++ ..|++||+.+.... .. ++..++++.+++.+ ++..++++.+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF---NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC---CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 457899999999888 47999999875321 11 12234444455421 112457889999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN--VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~--~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++||||++.+|+++||||||+|||+.+++.+++ +++..+ +|+|||++||+++++. .||++++|++|+
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999998 566554 5899999999999986 599999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=384.29 Aligned_cols=219 Identities=23% Similarity=0.467 Sum_probs=187.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++.. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +...+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred ceEEEEEEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3599999999997421 2569999999999999999999999999999999999999999999999999865 55678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|++ |++||+.++.. . ..++++.++++.+++.+ +........+||||||||+
T Consensus 413 ~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 413 RARMALVPQDPVLFAA-SVMENIRYGRP-----D-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred HHhceEEccCCccccc-cHHHHHhcCCC-----C-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 8899999999999987 99999987421 1 11345666666666531 0122345567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++|||++.+|++++||||||+||+.+++.+.+.+++..+++|+|++||+++... .|||++.|++|++++.|+++++.++
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999999999999998877999999999998875 5999999999999999999998765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=337.30 Aligned_cols=193 Identities=21% Similarity=0.332 Sum_probs=166.0
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE-ECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~-i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|. ++|..+. +| |.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~---~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LG---ANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cc---cccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 7775321 22 4567889999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
|+.+....++.+.++.. +.+.+..++. +..++++++||||||||+++|||++.+|+++||||||+++|+.+++.+
T Consensus 69 nl~~~~~~~~~~~~~~~---~~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 69 NARMMASLYGLDGDEFS---HFCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHHcCCCHHHHH---HHHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 99998776654433322 2334556775 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 424 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 424 ~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++.+.+..+++++|++||++++++.+||++++|++|+++..|+.++.++.+
T Consensus 144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 194 (213)
T PRK15177 144 QAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALF 194 (213)
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHH
Confidence 998865444578999999999999999999999999999999999987654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=383.60 Aligned_cols=223 Identities=25% Similarity=0.387 Sum_probs=198.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 321 (568)
++++++|++|+|++.. +.+.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|++.++|+++... .++
T Consensus 3 ~~l~~~nl~~~y~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCC--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 4799999999996321 125699999999999999999999999999999999999999999999999998652 222
Q ss_pred --h-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 --I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 --~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
. ++.+||+||++.+++.+|+.||+.+.....+...++.++++.++++.++|. +..++++++||||||||++||||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhcCCcccCCHHHHHHHHHHHH
Confidence 2 568999999999999999999999865555555556667889999999997 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|+.+|++++|||||+|||+.+++.+.+++++++ +|+|+|++||+++.++ .|||+++|++|+++..|++++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999864 6999999999999986 59999999999999999998764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=347.03 Aligned_cols=234 Identities=26% Similarity=0.430 Sum_probs=210.6
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
...++.++++..|.-++| .....|++++||++++||..||+|.+|||||||=.+|.++++++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 346899999999975433 12357999999999999999999999999999999999999876 999999999963
Q ss_pred ----cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 318 ----DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 318 ----~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
.+..+|+++-+|||+| .|-|.|||.|.+.-+..+++ .+..+..+++.++|+++||++ .-++++++++||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-~~r~RYPhEFSGGQ 431 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-ATRNRYPHEFSGGQ 431 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-hHhhcCCcccCcch
Confidence 3456789999999997 58999999999998887764 567788889999999999986 68999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||++||||++-+|++++||||||+||..-+.++.++++++ +.|.+-+++|||+..+..+||+|++|.+|++++.|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 99999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HHHHHhcCCcE
Q 008362 468 KELKARYGGSY 478 (568)
Q Consensus 468 ~~l~~~~~~~~ 478 (568)
+++.+.....|
T Consensus 512 ~~if~~P~~~Y 522 (534)
T COG4172 512 EAVFANPQHEY 522 (534)
T ss_pred HHHhcCCCcHH
Confidence 99988765544
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=330.98 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=166.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|+|++ +.++ ++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.... ++
T Consensus 1 ~l~~~~l~~~~~~------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KP 70 (195)
T ss_pred CeEEEEeeEEECC------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---hh
Confidence 3789999999963 3455 599999999999999999999999999999999999999999999875321 35
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.++|++|++.+++.+|++||+.+.....+ ..+++.++++.+++. +..++++++||||||||+++|||++.+|+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 68999999888888999999988654432 134677888999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRL 453 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri 453 (568)
+++|||||+|||+.+++.+++++++. ++|+|||++||++++++. ||.+
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999864 568999999999999876 7765
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=339.55 Aligned_cols=198 Identities=24% Similarity=0.440 Sum_probs=177.8
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHHhhcceEEEcCCCCCCCCCCHH
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
=+++|+.+...++||.|++|||||||+|||+|+.+|++|.|.+||.-+... ...-+++|||+||+..|||.+||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 367889888789999999999999999999999999999999999876432 223468899999999999999999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
.||.|.... . .....+++.+.+|+++ ..++++.+|||||||||+|+|||+..|++++||||.|.||..-+++
T Consensus 95 gNL~YG~~~-~-----~~~~fd~iv~lLGI~h--LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 95 GNLRYGMWK-S-----MRAQFDQLVALLGIEH--LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred cchhhhhcc-c-----chHhHHHHHHHhCcHH--HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 999985321 1 3456788899999975 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 423 LWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 423 i~~~l~~~~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+...++++.+ +..|+.+||+++|+.++||||++|++|++.+.|..+++.++
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999999753 78999999999999999999999999999999999998654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=382.96 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=187.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++||+++|++. ++++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 330 ~i~~~~v~f~y~~~----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTFRYPGR----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred eEEEEEEEEEcCCC----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 59999999999642 2569999999999999999999999999999999999999999999999999864 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++++||||++.+|+. |++||+.++. -+ +..++++.++++.+++.+ +.........||||||||++
T Consensus 406 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~~----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 406 RQVALVSQDVVLFND-TIANNIAYGR-TE----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred hhceEEccCcccccc-cHHHHHhcCC-CC----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 999999999999987 9999998752 11 122345666777776631 01122334579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||++.+|++++||||||+||+.+++.+.+.|++..+++|+|++||+.+... .||+|++|++|+++..|+.+++.++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999999999998878899999999997764 6999999999999999999998654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=383.07 Aligned_cols=209 Identities=29% Similarity=0.491 Sum_probs=188.6
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. ...++.+|||||++.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999999885 8999999998753 45678899999999999999
Q ss_pred CHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC------CCChhHHHHHHHHHHHcCCCCEEEEeC
Q 008362 340 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG------KYSGGMKRRLSVAISLIGNPKVVYMDE 410 (568)
Q Consensus 340 Tv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~------~LSgG~kqrl~la~Al~~~p~lllLDE 410 (568)
||+||+.|.++++. .+.++.+++++++++.+||.+ .+|++++ .||||||||++||+||+.+|++++|||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 99999999887753 234556678999999999974 6788776 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 411 PSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 411 PtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||+|||+.++..+++.+++. ++|+|||+++|++. ++..+|||+++|++|+++..|+++++++.+.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 99999999999999999986 45999999999995 8889999999999999999999999987664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=374.42 Aligned_cols=216 Identities=23% Similarity=0.301 Sum_probs=179.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCeeCCC--cH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DM 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~~i~~--~~ 319 (568)
.++++++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++.. ..
T Consensus 258 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 457999999999973 4699999999999999999999999999999999998876 79999999987632 22
Q ss_pred HHhhcceEEEcCCCCCCCC--CCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWET--LTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~--lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
...++++||+||++.++.. .|+++++.+... ..+...++.+++++++++.++|.+ +..++++++|||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-hhccCchhhCCHHHHHHH
Confidence 3456789999998765442 467666643211 111112334567889999999962 267999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-ceEEEEcCCHHHHHH-hCCEEEEEECCEEEeec
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g-~tiil~tH~~~e~~~-l~dri~il~~G~l~~~g 465 (568)
+||+||+.+|+++||||||+|||+.+++.++++|+++ +++ .|||++|||++++.. +|||+++|++|+++..-
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999986 455 579999999999987 69999999999987654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=374.81 Aligned_cols=207 Identities=25% Similarity=0.311 Sum_probs=178.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+++++||+|+|++ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------G 67 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------C
Confidence 47999999999962 24699999999999999999999999999999999999999999999875 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCchh----------------------HHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKGPA----------------------LTQAVEESL 367 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~-------------~~~~~~----------------------~~~~~~~~l 367 (568)
..+||+||++.+++.+|++||+.+... .+ +.+..+ ..+++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 469999999999999999999987421 10 111111 124566778
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 368 ~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
+.+++. ..++++++||||||||++|||||+.+|+++||||||++||+.+++.+.+.|++.. .|||++||+++++.
T Consensus 148 ~~~~l~---~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~ 222 (552)
T TIGR03719 148 DALRCP---PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLD 222 (552)
T ss_pred hhCCCC---cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 888884 3688999999999999999999999999999999999999999999999998763 59999999999999
Q ss_pred HhCCEEEEEECCEEE-eecCHHHH
Q 008362 448 ALCDRLGIFVDGSLQ-CIGNPKEL 470 (568)
Q Consensus 448 ~l~dri~il~~G~l~-~~g~~~~l 470 (568)
.+|||+++|++|+++ +.|+.++.
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999976 67888764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=313.85 Aligned_cols=201 Identities=26% Similarity=0.429 Sum_probs=183.3
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
+.++|+++||++.+||..+|.||+|||||||+|+++-+.+||+|++++.|+++++ ..+..|++++||.|.+.||++ ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 3579999999999999999999999999999999999999999999999999976 678899999999999999998 99
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
++|+.|.-+++.... .+....++|+++++.+ ...++++.+||||||||++++|-|.-.|++|+||||||+||+.+++
T Consensus 94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~-~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr 170 (223)
T COG4619 94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170 (223)
T ss_pred hhccccchHHhccCC--ChHHHHHHHHHcCCch-hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHH
Confidence 999999888875332 3467788999999986 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 422 NLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 422 ~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
.+-++|.++ .++++++.+|||-+++.+.+|+++-+..|++ |..+++
T Consensus 171 ~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~---~~~~e~ 218 (223)
T COG4619 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218 (223)
T ss_pred HHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc---cccccc
Confidence 999999885 3689999999999999999999999999965 444443
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=318.76 Aligned_cols=164 Identities=27% Similarity=0.385 Sum_probs=148.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++++|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~ 65 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------ED 65 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ce
Confidence 468999999963 246999999999999999999999999999999999999999999999873 57
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.++ ..|++||+.+. ++.+||||||||+++|||++.+|++
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998776 57999998752 3468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++|||||+|||+.+++.+.+++++. ++|+|++||+++.+ .+|||+++|++|.
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9999999999999999999999876 68999999999876 5899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=341.46 Aligned_cols=202 Identities=21% Similarity=0.331 Sum_probs=168.3
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
....|+++|+++. + +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~-~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV-G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------- 98 (282)
T ss_pred CCCeEEEEEEEEe-c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------
Confidence 3457999999985 2 3599999999999999999999999999999999999999999999988
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 392 (568)
.++|+||++.+++. |++||+.+.... .. .++.+.++.+++.+ ....++++.+||||||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~---~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSY---DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhccccc---CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 28999999988885 999999864321 11 11222233333310 012345678999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++|||||+.+|+++||||||+|||+.+++.+.+.+ ++.++++|||++||+++++. .|||+++|++|+++..|+++++.
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999865 55666899999999999985 79999999999999999999886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 247 ~ 247 (282)
T cd03291 247 S 247 (282)
T ss_pred h
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=373.82 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=180.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------- 386 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------
Confidence 357999999999973 5699999999999999999999999999999999999999999999853 2
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
..+||+||++ .+++.+|++||+.+.....+.... ....+++++.+++.+ ...++++++||||||||++||+|++.
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1599999996 788899999999886543332222 223557899999952 35799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC-CEEE-eecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~-G~l~-~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|++.. + |||++|||+++++.+|||+++|++ |++. ..|+.++..+
T Consensus 463 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 463 GGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999999874 4 899999999999999999999996 7876 5788777654
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=337.48 Aligned_cols=190 Identities=25% Similarity=0.336 Sum_probs=161.8
Q ss_pred ceeeeeEEEEe-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 265 VAVNGLSLALP-----SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 265 ~al~~isl~i~-----~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
..++|++|+++ +||++||+||||||||||+++|+|+.+|++|+|.++|. .++|+||+...+..+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCC
Confidence 36777777776 79999999999999999999999999999999999984 589999998877789
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~ 419 (568)
|++|++.+.....+ . .....+++++.+++. +..++++++||||||||++||+||+.+|+++||||||++||+.+
T Consensus 77 tv~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 77 TVRDLLSSITKDFY--T--HPYFKTEIAKPLQIE--QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred CHHHHHHHHhhhcc--c--cHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999976533221 1 123467889999996 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEE--eecCHHHHH
Q 008362 420 RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIGNPKELK 471 (568)
Q Consensus 420 r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~--~~g~~~~l~ 471 (568)
++.+.++|++. + .|+|||++||+++++..+|||+++|+++... ..+++..++
T Consensus 151 ~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 151 RLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999986 3 4899999999999999999999999765332 445555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.49 Aligned_cols=209 Identities=24% Similarity=0.342 Sum_probs=180.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|++++ +
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------- 384 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------
Confidence 357999999999973 5699999999999999999999999999999999999999999999844 2
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
..+||+||++ .+++.+|+.||+.+.....+.... ..+++++++.+++.. ...++++++|||||||||+||+||+.
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 1599999986 588889999999886543333221 234567899999952 25689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC-CEEE-eecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~-G~l~-~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|++.. + |||++|||++++..+|||+++|++ |++. ..|+.++.++
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999874 3 899999999999999999999997 5876 5677766544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=386.77 Aligned_cols=223 Identities=27% Similarity=0.495 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||++.|+.+ ++.++++|+||++++||.+||+||+||||||.+.+|-..+.|++|.|.|||+|+++ +.+.+|
T Consensus 987 ~I~~~~V~F~YPsR---P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCC---CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 59999999999975 46889999999999999999999999999999999999999999999999999976 778899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCC-------CC--CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNL-------FH--GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L-------~~--~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||.|.|+|.||.. |++||+.++ ..+ .+ .+++.++++..+. ++ +.....+..+||||||||++
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYG-SEE-VS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhcc-CCC-CC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 999999999999996 999999986 222 33 3445555555543 22 12344556689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||++.||+||||||.||+||.++.+.+.+.|.+...|||.|++.|.+..+.. ||.|+++++|++++.|+.++|.++-
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999975 9999999999999999999999865
Q ss_pred CCcE
Q 008362 475 GGSY 478 (568)
Q Consensus 475 ~~~~ 478 (568)
|.-|
T Consensus 1216 G~Y~ 1219 (1228)
T KOG0055|consen 1216 GIYF 1219 (1228)
T ss_pred CchH
Confidence 5443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=409.11 Aligned_cols=218 Identities=18% Similarity=0.349 Sum_probs=191.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +.+.+|
T Consensus 1234 ~I~f~nVsf~Y~~~----~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG----LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred cEEEEEEEEEECCC----CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 59999999999632 2569999999999999999999999999999999999999999999999999975 567889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++++|+||++.+|++ |++|||.++. .. .++++.++++..++.+ +........+||||||||++
T Consensus 1310 ~~i~iVpQdp~LF~g-TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSG-TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred hhcEEECCCCeeeCc-cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 999999999999997 9999998642 11 2345667777776632 01233445689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||||+.+|+|+|||||||+||+++.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++.
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999988789999999999999986 9999999999999999999998754
Q ss_pred C
Q 008362 475 G 475 (568)
Q Consensus 475 ~ 475 (568)
+
T Consensus 1461 ~ 1461 (1495)
T PLN03232 1461 T 1461 (1495)
T ss_pred C
Confidence 3
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=322.03 Aligned_cols=199 Identities=27% Similarity=0.431 Sum_probs=183.5
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcC-CCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-EDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q-~~~l~~~lTv 341 (568)
.+.||+||||++++||.+||+|+||||||||+|+|+|.++||+|+|.++|+-- .... .-.+-|.+|+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~------------~li~lg~Gf~pelTG 106 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA------------PLIELGAGFDPELTG 106 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe------------hhhhcccCCCcccch
Confidence 57899999999999999999999999999999999999999999999999531 1111 1234567999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
+||+.+.+.+.|.++++.++.++++.+.-+|. ++.|+|++++|.||+-||++|.|...+|++||+||-.+--|+.-++
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG--~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELG--DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH--HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 99999999999999999999999999999996 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 422 NLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 422 ~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+-.+.+.+. ++++|||++|||++.+.++|||++.|++|+++..|++++..+.|.
T Consensus 185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 999999987 678999999999999999999999999999999999999987764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=407.81 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=191.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +.+.+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 359999999999642 2469999999999999999999999999999999999999999999999999976 67789
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||++||++.||+. |++|||..+. . ..++++.++++..++.+ +........+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---C----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999997 9999998642 1 12345667777766531 0122334568999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998789999999999999986 999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 1463 ~ 1463 (1622)
T PLN03130 1463 E 1463 (1622)
T ss_pred C
Confidence 3
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=403.29 Aligned_cols=218 Identities=22% Similarity=0.372 Sum_probs=187.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---------------------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--------------------- 303 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--------------------- 303 (568)
.|+++||+++|+++. ++++|+|+||+|++||++||+|||||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~---~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP---NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCCC---CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 599999999997532 35799999999999999999999999999999999999998
Q ss_pred ---------------------------------CceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 304 ---------------------------------TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 304 ---------------------------------~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
++|+|+++|.|+.. +.+.+|++||||||++.||+. |++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 69999999999975 667889999999999999975 9999999852
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r 420 (568)
. . ..+++++++++..++.+ +........+||||||||++|||||+.+|+|||||||||+||+.+.
T Consensus 1321 ~--~----at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E--D----ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C--C----CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1 1 12345666666666531 1122344567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC----CEEE-eecCHHHHHHh
Q 008362 421 NNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD----GSLQ-CIGNPKELKAR 473 (568)
Q Consensus 421 ~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~----G~l~-~~g~~~~l~~~ 473 (568)
+.+.+.|.+.. +++|+|++||+++.+.. ||+|++|++ |+++ +.|+.++|.++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhc
Confidence 99999999873 69999999999998875 999999999 9955 89999999763
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.06 Aligned_cols=202 Identities=21% Similarity=0.331 Sum_probs=171.5
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE-----------ECCeeCCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 317 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~-----------i~G~~i~~ 317 (568)
.||+|+|++ .+.+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 4 ~~~~~~y~~-----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGP-----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecC-----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 578999973 236999999 4999999999999999999999999999999999996 78888754
Q ss_pred cHHHhh---cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 318 DMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 318 ~~~~~r---~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
...+.+ ..+++++|+..+++. ++.+++.... ...+.++.+.++++.+|+. +..++++.+||||||||++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELR--HVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 322222 247999999888884 8888887642 1233456788999999996 3689999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+|||++.+|++++|||||+|||+.+++.+.+++++++ +++|||++||+++++..+||++++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999999864 5899999999999999999999999 46665433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=368.57 Aligned_cols=200 Identities=26% Similarity=0.485 Sum_probs=173.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++. ++++++|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 320 ~i~~~~v~f~y~~~----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCC----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 59999999999742 2469999999999999999999999999999999999999999999999999965 557789
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+++|||||++.+|+. |++||+.++.. .. .++++.++++..++.+ +........+||||||||++
T Consensus 396 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIRLARP--DA----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred hheEEEcCCCcccCc-CHHHHHhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999999986 99999987531 11 1345667777776642 11233456789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+|||++.+|++++||||||+||+.+.+.+.+.+++..+++|+|++||+++.+. .||||++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999999999998878999999999999985 59999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=370.07 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=179.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 457999999999973 56999999999999999999999999999999999999999999998741
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 323 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 323 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++||++|+. .+.+..|+.+++.-. ......+++.++|+.+++.. +..++++++|||||||||+||+||+
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2599999974 456667888876421 11223467889999999952 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~ 472 (568)
.+|++|||||||+|||+.+++.+.+.|+++ +| |||++|||+++++.+|||+++|++|+++ +.|+.++..+
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999987 34 9999999999999999999999999997 7899988743
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=335.99 Aligned_cols=237 Identities=24% Similarity=0.356 Sum_probs=208.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.+.+.++||+..|+..+ ....|+++|||++++||.+||+|.+|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 4 ~~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 35799999999997543 357899999999999999999999999999999999999864 37899999999843
Q ss_pred ----cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCC-CCcccccCCCCChh
Q 008362 318 ----DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGG 388 (568)
Q Consensus 318 ----~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~LSgG 388 (568)
....+| .+|+++||+| .|.|-.|+...+.-..++ +|.++++.++++.++|+.+|+.+ +...+.++++||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 233444 3799999998 588888998888776665 47788889999999999999974 23468899999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|||||.||+||+.+|++||.||||++||..-+.+|.++|++++ -|.+++++|||+..+.++||||+||.+|++++.|+
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 9999999999999999999999999999999999999999864 49999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEE
Q 008362 467 PKELKARYGGSYVFT 481 (568)
Q Consensus 467 ~~~l~~~~~~~~~l~ 481 (568)
.+.+.....+.|+-.
T Consensus 242 t~~lF~~PqHpYTr~ 256 (534)
T COG4172 242 TETLFAAPQHPYTRK 256 (534)
T ss_pred HHHHhhCCCChHHHH
Confidence 999998887777643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=400.47 Aligned_cols=217 Identities=18% Similarity=0.312 Sum_probs=190.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+++ ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ..+.+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 369999999999742 2469999999999999999999999999999999999999999999999999976 66789
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||++||++.||++ |++|||..+. ..+ ++++.++++.+++.+ +........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999998 9999997432 112 345677777777641 0122334457999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+++.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999886 999999999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=398.47 Aligned_cols=216 Identities=21% Similarity=0.386 Sum_probs=189.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +.+.+|
T Consensus 1308 ~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred eEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 59999999999742 2459999999999999999999999999999999999999999999999999976 667899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Cccc----ccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVAD----KQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~----~~~~~LSgG~kqrl~ 394 (568)
++|||+||++.||+. |++|||..+. +..++++.++++.+++.+. +-.| ....+||||||||++
T Consensus 1384 ~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred hcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 999999999999997 9999996431 1123568888888887520 0122 334579999999999
Q ss_pred HHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~-p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+++ |++||||||||+||+.+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999995 9999999999999999999999999988789999999999998875 999999999999999999999764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=364.08 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=174.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+.+|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------- 399 (590)
T ss_pred ceEEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------
Confidence 357999999999963 25999999999999999999999999999999999999999999885
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
.++||+||+..+++.+||+|++.+..... . ....++++++.++|. +..++++.+|||||||||+||+||+.+
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLE--RLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCH--HHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 14899999988888999999998753211 1 123568899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|+++||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+|||+++|+ |++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999986 3 48999999999999999999999996 57776665
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=365.20 Aligned_cols=187 Identities=27% Similarity=0.507 Sum_probs=162.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||+++|++ ++++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.|+..-.+.+|+
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHh
Confidence 5999999999974 24599999999999999999999999999999999999999999999999999655667889
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
++||+||++.+|++ |++||+.++. ++..++++.++++..++.+ +........+||||||||++|
T Consensus 409 ~i~~V~Q~~~lF~~-TI~eNI~~g~------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 409 RISVFAQDAHLFDT-TVRDNLRLGR------PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred heEEEccCcccccc-cHHHHHhccC------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 99999999999997 9999999852 1122456777777777642 011223445799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
|||++.+|+++|||||||+||+.+.+.+.+.+++..+++|+|++||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999888899999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=363.20 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=174.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++++|++ ++++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+.+|
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 5999999999973 2469999999999999999999999999999999999999999999999999865 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc-----cCCCCChhHHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK-----QAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~~LSgG~kqrl~la~A 398 (568)
++++|+||++.+|+. |++|| + ....++++++.++.+++.+ ..+. ...+||||||||++||||
T Consensus 397 ~~i~~v~q~~~lf~~-ti~~n--------~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQ-LLGPE--------G--KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHH-hhccc--------c--CchHHHHHHHHHHHcCCch--hhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999986 88887 1 1223456788889998863 2221 145899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
++.+|+++||||||++||+.+++.+++.+.+. + +|+|+|++||+++.+. .||||++|++|++++.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998764 3 5899999999997765 6999999999999876
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=310.26 Aligned_cols=221 Identities=25% Similarity=0.349 Sum_probs=186.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh-
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r- 323 (568)
++.++|++|.|.+... .+++|++++|++|++|+++.++|.||||||||+++|+|-++||+|+|.|+|.|+...+..-|
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 4677899998875322 36789999999999999999999999999999999999999999999999999976443333
Q ss_pred cceEEEcCCC--CCCCCCCHHHHHHHHhhh---cCCCc---hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 324 TSMGVCPQED--LLWETLTGREHLLFYGRL---KNLKG---PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 324 ~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l---~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
..++-|+|+| ..++.||++||+.+...- +|+.. ...++...+.++.+++.-++..+.+++-|||||||-+++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4578899997 578999999999985432 23332 233444556667666543457899999999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
++|-++.|++++|||-|++|||.....+.+.-.+. +.+.|.+|+||+|+.|-.+.+|.++|++|+|+.+-+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999998885 357899999999999999999999999999987654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=395.78 Aligned_cols=210 Identities=22% Similarity=0.400 Sum_probs=176.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE-CCeeCCC-cHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDIRT-DMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i-~G~~i~~-~~~~~ 322 (568)
.|+++||++.|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|+++.. +...+
T Consensus 382 ~I~~~nVsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK---DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCCC---CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 599999999997431 357999999999999999999999999999999999999999999999 5688854 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhh-cCC-----------------------------------------------
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KNL----------------------------------------------- 354 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l-~~~----------------------------------------------- 354 (568)
|++|||+||++.+|+. |++||+.+.... ++.
T Consensus 459 r~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 8999999999999985 999999985310 000
Q ss_pred ---CchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 355 ---KGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 355 ---~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
.....++++.++++.+++.+ +...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 00112356777777777642 011356788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 423 LWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 423 i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
+.+.|++.+ +|+|+|++||+++.++ .||||++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 999999874 5899999999999985 79999999986
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=302.12 Aligned_cols=228 Identities=25% Similarity=0.345 Sum_probs=202.5
Q ss_pred eEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~---~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
.++++||+|.|..+.+ +....|++.|||++++|+..|++|.||||||||.|||+|+++||+|+|.+||+.+....-.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 5789999999875432 2346799999999999999999999999999999999999999999999999998653333
Q ss_pred hh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.| ++|-++||++ .+.|.+.+.+.|....++. .+..++..+++.+.|+.+||-+ ++++-+++.||-||||||++||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P-dhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc-cccccchhhcCchhHHHHHHHH
Confidence 33 6799999997 5788888888888877664 3556677788999999999986 7999999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+-+|+++|.||..++||...|.++.++..++ +.|.+.|.++.++..+..++|.|++|++|++++.|++.++...
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 999999999999999999999999999998875 4599999999999999999999999999999999999998753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=366.82 Aligned_cols=207 Identities=21% Similarity=0.288 Sum_probs=178.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++||+|.|++ +++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 357999999999973 56999999999999999999999999999999999999999999998 5432
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.+||++|+. .+++.+||.||+.+........ ....++.++++.+++.. +..++++++|||||||||+||+||+.
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHP-KRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCH-HHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 599999985 6889999999998753211111 12346788899999952 35789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE-CCEEEe-ecCHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-DGSLQC-IGNPKEL 470 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~-~G~l~~-~g~~~~l 470 (568)
+|++|||||||+|||+.+++.+.+++++. +.|||++|||++++..+|||+++|+ +|++.. .|+.++.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999876 4599999999999999999999998 899866 5666665
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=361.90 Aligned_cols=207 Identities=18% Similarity=0.278 Sum_probs=176.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|++..+ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.+
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 35999999999974211 12369999999999999999999999999999999999999999999999999965 45678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc------CCCCChhHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ------AGKYSGGMKRRLSVA 396 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~~~LSgG~kqrl~la 396 (568)
|+.++|++|++.+|++ |+++|.. ++..++++.++++.+++.+ ..++. ..+||||||||++||
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~--~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIAD--KVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCch--hhcccccccCCcccCCHHHHHHHHHH
Confidence 8999999999999986 8888841 1233566888999999863 33222 367999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~-~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||++.+|+++||||||++||+.+++.+.+.+. .. .+|+|+|++||+++.++ .||+|++|++|++++.
T Consensus 483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998664 44 46899999999998775 6999999999999865
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=298.53 Aligned_cols=144 Identities=31% Similarity=0.500 Sum_probs=136.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|. +.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~ 64 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VK 64 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EE
Confidence 468999999973 46999999999999999999999999999999999999999999999984 46
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+|| ||+||+||++|||||+.+|++
T Consensus 65 i~~~~~-----------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEcc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++|||||+|||+.+++.+++.++++ ++|||++||+++++..+|||+++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4799999999999999999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=361.80 Aligned_cols=205 Identities=20% Similarity=0.285 Sum_probs=169.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------- 64 (638)
T ss_pred CEEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------
Confidence 4889999999974 579999999999999999999999999999999999999999999998842
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHH-----------------------Hhhhc----CCCchhHHHHHHHHHHHcCCCCCCc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLF-----------------------YGRLK----NLKGPALTQAVEESLKSVNLFHGGV 377 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~-----------------------~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~ 377 (568)
.+||++|++..+. .|+.+++.- +..+. .....+.+.+++++++.+|+.+ +.
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~ 142 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQ 142 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hh
Confidence 3677777543322 354443321 11111 1111234567889999999962 36
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
.++++++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++. +.|||++|||++++..+|||+++|+
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999876 4699999999999999999999999
Q ss_pred CCEEE-eecCHHH
Q 008362 458 DGSLQ-CIGNPKE 469 (568)
Q Consensus 458 ~G~l~-~~g~~~~ 469 (568)
+|++. ..|+.+.
T Consensus 221 ~G~i~~~~g~~~~ 233 (638)
T PRK10636 221 QQSLFEYTGNYSS 233 (638)
T ss_pred CCEEEEecCCHHH
Confidence 99996 4676554
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=315.21 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=188.4
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cH-
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM- 319 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~- 319 (568)
..+.|+++|++.+|++ +++|+|+|++|++||-.+|+||||||||||+++++|..+|++|.+.+.|+...+ +.
T Consensus 28 ~~~li~l~~v~v~r~g------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEECC------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 3457999999999984 789999999999999999999999999999999999999999999999998853 33
Q ss_pred HHhhcceEEEcC--CCCCCCCCCHHHHHHH--Hhhh--cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 320 DRIYTSMGVCPQ--EDLLWETLTGREHLLF--YGRL--KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 320 ~~~r~~ig~~~Q--~~~l~~~lTv~e~l~~--~~~l--~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
.++|++||+|.- +..+.+..+|+|-+.- ++.+ +. ...++..+++..+++.+|+.+ .++++.++||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHH
Confidence 789999999974 3445566788886642 2221 11 234556678999999999974 8999999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~---~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+-|||||+.+|+++|||||++|||..+|..+.+.+.+.. .+.++|++||+.+|+-...+++..+++|+++..|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999998852 37899999999999999999999999999998773
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=388.68 Aligned_cols=211 Identities=19% Similarity=0.267 Sum_probs=183.5
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC----CCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 338 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~----~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~ 338 (568)
++++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999986 5799999999998754334456779999999999999
Q ss_pred CCHHHHHHHHhhhcC-------CCchhHHHH-HHHHHHHcCCCCCCccccc-----CCCCChhHHHHHHHHHHHcCCCCE
Q 008362 339 LTGREHLLFYGRLKN-------LKGPALTQA-VEESLKSVNLFHGGVADKQ-----AGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 339 lTv~e~l~~~~~l~~-------~~~~~~~~~-~~~~l~~~~L~~~~~~~~~-----~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+|++.|.++++. .++++..++ ++++++.+||.+ .+|++ ++.|||||||||+||+||+.+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH--TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc--ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999877652 222332333 467899999974 55554 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH-HHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~-~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
++|||||+|||+.++..+.+.|+++ + .|+|||+++|+. +++.+++||+++|++|+++..|+++++++.|.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~ 303 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFE 303 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHH
Confidence 9999999999999999999999986 3 489999999996 78999999999999999999999999877653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=360.03 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=175.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++++++|+++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 57999999999963 24699999999999999999999999999999999999999999999865 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHh-h-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYG-R-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~-~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++||+||++ .+.+++.++..+.. . ..+. .++++.++++.+++.+ +..++++.+|||||||||+||+|++.
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~-~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCCh-HHhcCCccccCHHHHHHHHHHHHHhc
Confidence 4699999985 34456666644322 1 1121 2356788999999962 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~ 473 (568)
+|++|||||||+|||+.+++.+.+.+.+. +| |||++|||++++..+|||+++|++|+++ ..|+.++.++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999888765 34 9999999999999999999999999998 67888876543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=388.65 Aligned_cols=216 Identities=22% Similarity=0.363 Sum_probs=188.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|++. .+.+|+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.++|.|+.. ..+.+
T Consensus 1216 g~I~f~nVs~~Y~~~----~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CeEEEEEEEEEeCCC----CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 369999999999742 3579999999999999999999999999999999999997 79999999999975 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Ccccc----cCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVADK----QAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~~----~~~~LSgG~kqrl 393 (568)
|++++|+||++.+|+. |++|||..+. +..++++.++++.++|.+. +-.|. ...+||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999997 9999996532 1124567888888887420 01222 2347999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|||++||.++.+.. ||||++|++|++++.|+|++|.++
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988789999999999998876 999999999999999999999753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=336.43 Aligned_cols=224 Identities=23% Similarity=0.420 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|.. ++++|+||||++.+|+.+||+||+||||||++|+|-.+...++|.|.++|+||+. ....+
T Consensus 536 G~i~fsnvtF~Y~p-----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP-----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred CeEEEEEeEEecCC-----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 46999999999974 5789999999999999999999999999999999999999999999999999975 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHH---HHHcCCCCCCcccc----cCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES---LKSVNLFHGGVADK----QAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~---l~~~~L~~~~~~~~----~~~~LSgG~kqrl~l 395 (568)
|++||++|||..||++ |+..|+++. +... +.++..+.++.+ =+.+++.+ -.+. +.-.|||||||||+|
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIrya-k~~A-sneevyaAAkAA~IHdrIl~fPe--gY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYA-KPSA-SNEEVYAAAKAAQIHDRILQFPE--GYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeec-CCCC-ChHHHHHHHHHhhHHHHHhcCch--hhhhhhhhcccccCCcchhhHHH
Confidence 9999999999999998 999999963 3321 222222221111 01234432 2233 344699999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||+++.+|.+++|||.||+||....|.+...+.+...|||-|++.|.+..+-. ||.|.++++|+|++.|..+||.++-|
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhccC
Confidence 99999999999999999999999999999999999899999999999999875 99999999999999999999988865
Q ss_pred CcE
Q 008362 476 GSY 478 (568)
Q Consensus 476 ~~~ 478 (568)
..|
T Consensus 765 G~Y 767 (790)
T KOG0056|consen 765 GAY 767 (790)
T ss_pred CcH
Confidence 544
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=353.45 Aligned_cols=203 Identities=22% Similarity=0.249 Sum_probs=167.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------- 66 (635)
T ss_pred EEEEeeEEEEeCC------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------
Confidence 6999999999973 569999999999999999999999999999999999999999999998731
Q ss_pred ceEEEcCCCCCCCCCCHHHH------------------------------HHHHhhhc----CCCchhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREH------------------------------LLFYGRLK----NLKGPALTQAVEESLKSV 370 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~------------------------------l~~~~~l~----~~~~~~~~~~~~~~l~~~ 370 (568)
.+++++|.+......++.++ +..+..+. .....+.++++.++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 25666665432222344443 22222111 111123456788999999
Q ss_pred CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhC
Q 008362 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 371 ~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~ 450 (568)
|+. .++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+.+.|++++ .|||++|||+++++.+|
T Consensus 147 gl~----~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~ 220 (635)
T PRK11147 147 GLD----PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMA 220 (635)
T ss_pred CCC----CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhc
Confidence 994 378999999999999999999999999999999999999999999999998874 59999999999999999
Q ss_pred CEEEEEECCEEEe-ecCHHH
Q 008362 451 DRLGIFVDGSLQC-IGNPKE 469 (568)
Q Consensus 451 dri~il~~G~l~~-~g~~~~ 469 (568)
|||++|++|+++. .|+.++
T Consensus 221 d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 221 TRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CeEEEEECCEEEEecCCHHH
Confidence 9999999999974 577654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=297.58 Aligned_cols=224 Identities=23% Similarity=0.373 Sum_probs=197.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCC--cH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT--DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~--~~ 319 (568)
.+++++||+..-.+ ++.+|++|||+|++||+.+|+||||||||||.++|+|.- ++|+|+|.++|+|+.. ..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHh
Confidence 36899999999863 158999999999999999999999999999999999974 7899999999999965 45
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSV 395 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl~l 395 (568)
+++|..|...+|.|.=+|..|+.+.|....+.+... ..+..+++++.++.+++.+ ++++|.+. .+|||+|+|..|
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHH
Confidence 678889999999999999999999999766543211 2466788999999999985 68899886 699999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+++.+|++.|||||-||||..+-+.+-+.+++++ +|++++++||+-+.++.+ .|++.+|.+|++++.|.+ ++..+
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 999999999999999999999999999999999975 699999999998887765 399999999999999999 66544
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
+
T Consensus 235 l 235 (251)
T COG0396 235 L 235 (251)
T ss_pred H
Confidence 3
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=300.78 Aligned_cols=146 Identities=27% Similarity=0.373 Sum_probs=133.5
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 328 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~ 328 (568)
.||+|.|++ +.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|
T Consensus 4 ~~l~~~~~~------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~ 65 (177)
T cd03222 4 PDCVKRYGV------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVY 65 (177)
T ss_pred CCeEEEECC------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEE
Confidence 589999973 5688884 9999999999999999999999999999999999999999853 789
Q ss_pred EcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 008362 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408 (568)
Q Consensus 329 ~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllL 408 (568)
+||+.. ||||||||+++|||++.+|++++|
T Consensus 66 ~~q~~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 66 KPQYID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EcccCC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998642 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEE
Q 008362 409 DEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462 (568)
Q Consensus 409 DEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~ 462 (568)
||||+|||+.+++.+.+.+++. ++ ++|||++||++++++.+|||+++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999886 45 499999999999999999999999877543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=352.34 Aligned_cols=226 Identities=31% Similarity=0.476 Sum_probs=201.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p---~~G~i~i~G~~i~~~~~~ 321 (568)
.+..+|++..-.+..+ ..+++|+|||.++++||+.|++||+|||||||+++|+|-... .+|+|.+||+.. ..+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhh
Confidence 4677888877764322 357899999999999999999999999999999999998874 799999999654 3456
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHHHHHHcCCCCCCcccccCC-----CCChhHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEESLKSVNLFHGGVADKQAG-----KYSGGMKRRL 393 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----~LSgG~kqrl 393 (568)
.++..||+.|+|.+++.+||+|++.+.+.++-. +.++.+++++++++.+||. +.+|+.++ .+||||||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~--~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE--KCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh--hhccceecCCCCCccccchhhHH
Confidence 788899999999999999999999999988732 4577889999999999997 47888887 5999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++|.-|+.||++++|||||+|||..+..++.+.|+++ ++|+|||+|=|... ++-.+.|++++|.+|+.+..|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 9999999999999999999999999999999999995 56999999999985 888899999999999999999999887
Q ss_pred HhcC
Q 008362 472 ARYG 475 (568)
Q Consensus 472 ~~~~ 475 (568)
+-+.
T Consensus 260 ~ff~ 263 (613)
T KOG0061|consen 260 EFFS 263 (613)
T ss_pred HHHH
Confidence 6553
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=382.59 Aligned_cols=209 Identities=21% Similarity=0.295 Sum_probs=182.8
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
++.+|+|+|+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.... .|+.+||++|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence 467999999999999999999999999999999999999998 999999999875321 267899999999999999
Q ss_pred CHHHHHHHHhhhcCCC----------chhH------------------------HHHHHHHHHHcCCCCCCcc-----cc
Q 008362 340 TGREHLLFYGRLKNLK----------GPAL------------------------TQAVEESLKSVNLFHGGVA-----DK 380 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~----------~~~~------------------------~~~~~~~l~~~~L~~~~~~-----~~ 380 (568)
||+|++.|.+++++.. .++. +..++++++.+||++ .+ |+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~--~~~t~vg~~ 332 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI--CKDTIVGDE 332 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc--ccCceeCCc
Confidence 9999999988766421 1110 113567899999963 33 66
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH-HHHHHhCCEEEEEE
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFV 457 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~-~e~~~l~dri~il~ 457 (568)
.++.|||||||||+||++|+++|++++|||||+|||+.++.++.+.|++. + .|+|||+++|+. +++..+||+|++|+
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 77899999999999999999999999999999999999999999999986 4 489999999996 68999999999999
Q ss_pred CCEEEeecCHHHHHHhcC
Q 008362 458 DGSLQCIGNPKELKARYG 475 (568)
Q Consensus 458 ~G~l~~~g~~~~l~~~~~ 475 (568)
+|+++..|+.+++++.|.
T Consensus 413 ~G~ivy~G~~~~~~~yF~ 430 (1470)
T PLN03140 413 EGQIVYQGPRDHILEFFE 430 (1470)
T ss_pred CceEEEeCCHHHHHHHHH
Confidence 999999999999987653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=353.66 Aligned_cols=193 Identities=23% Similarity=0.345 Sum_probs=164.8
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE-----------ECCeeCCCc
Q 008362 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRTD 318 (568)
Q Consensus 250 ~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~-----------i~G~~i~~~ 318 (568)
+++++||+ +..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++...
T Consensus 78 ~~~~~yg~-----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV-----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC-----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 37889974 346999999 9999999999999999999999999999999999997 899887543
Q ss_pred HHHh---hcceEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 319 MDRI---YTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 319 ~~~~---r~~ig~~~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..+. +..+++.+|.....+. .||+|++... +..++++++++.++|. ...++++++||||||||
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLE--NILDRDISELSGGELQR 220 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHH
Confidence 2222 2346776775444333 2999998742 2345788999999996 37899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
++||+||+.+|+++||||||++||+.+++.+++.|+++.+|+|||++||++++++.+|||+.+|.++
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999998644999999999999999999999999863
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=354.31 Aligned_cols=193 Identities=20% Similarity=0.330 Sum_probs=165.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++ |
T Consensus 450 ~~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------K 514 (659)
T ss_pred CeEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------C
Confidence 46999999999963 24699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCccccc---------CCCCChhHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGMKRRL 393 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~~LSgG~kqrl 393 (568)
+++||+||++.+++. |++||+.+.....+.. ....++++.++++.+++.+ ..+++ .++||||||||+
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH--ILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH--HHhhcCCcccccccccCCCHHHHHHH
Confidence 679999999999987 9999998754322211 1112456788899999863 44443 379999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
+||||++.+|+++||||||+|||+.+++.+.+.+++. |+|+|++||+++++ ..|||+++|+
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 9999999999999999999999999999999998763 89999999999987 5699999996
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=325.95 Aligned_cols=226 Identities=27% Similarity=0.482 Sum_probs=186.6
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMD 320 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~ 320 (568)
....+.+++++..=++. ++++|+|+||++.+||.+||+||+|||||||.|+|.|..+|++|.|++||.|++. +.+
T Consensus 331 P~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 331 PQGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred CCceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHH
Confidence 34579999999866542 4789999999999999999999999999999999999999999999999999965 677
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHH-----HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~-----~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
..-++|||.||+-.||+. |+.||+.=+.. ..+.+++- ..+++++-.+--..+.....-...||||||||+++
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaL 483 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIAL 483 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHH
Confidence 788999999999999998 99999964421 11111111 12344443332211122233445799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||-++|.+++||||-|+||....+.+.+.|...| +|.|+|++||...... .+|+|.+|++|++...|+.+|+.++.
T Consensus 484 ARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999875 7999999999998775 59999999999999999999988765
Q ss_pred C
Q 008362 475 G 475 (568)
Q Consensus 475 ~ 475 (568)
.
T Consensus 563 ~ 563 (580)
T COG4618 563 L 563 (580)
T ss_pred c
Confidence 4
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=289.48 Aligned_cols=154 Identities=38% Similarity=0.709 Sum_probs=142.8
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcce
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 326 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~i 326 (568)
++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 6899999963 469999999999999999999999999999999999999999999999998754 244567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEE
Q 008362 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 406 (568)
Q Consensus 327 g~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ll 406 (568)
+|+|| ||||||||+++|+|++.+|+++
T Consensus 76 ~~~~q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 76 GYVPQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred EEEee-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
+|||||+|||+.++..+++.+++.+ +++|++++||++++++.+||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999864 47999999999999999999999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=284.56 Aligned_cols=225 Identities=26% Similarity=0.413 Sum_probs=185.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-----CCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-----i~~ 317 (568)
.+.+++++|+|.|++ ....+||||++++||+.||+|.+|||||||++||+|-+.|++|+|.+.-.+ +..
T Consensus 4 ~PLL~V~~lsk~Yg~------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGP------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCC------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 357999999999985 357999999999999999999999999999999999999999999886532 211
Q ss_pred cHH-----HhhcceEEEcCCCC--CCCCCC----HHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCC
Q 008362 318 DMD-----RIYTSMGVCPQEDL--LWETLT----GREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385 (568)
Q Consensus 318 ~~~-----~~r~~ig~~~Q~~~--l~~~lT----v~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~L 385 (568)
..+ -.|..=|++.|+|. |-...+ +.|-+.- ..+-+ .++++...++|+++++.. +..|..+.++
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~-~RiDD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDL-DRIDDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCc-ccccCccccc
Confidence 111 12445699999863 333333 3333322 22322 356778889999999985 6789999999
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 386 SgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
|||||||+.|||-|+..|+++++||||.|||...+.++.++++.+ .+ |.+++++|||+..+.-++||..+|.+|++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999999999999999999999999986 34 8999999999999999999999999999999
Q ss_pred ecCHHHHHHhcCCcE
Q 008362 464 IGNPKELKARYGGSY 478 (568)
Q Consensus 464 ~g~~~~l~~~~~~~~ 478 (568)
.|-.+.+.......|
T Consensus 233 ~GLTDrvLDDP~hPY 247 (258)
T COG4107 233 SGLTDRVLDDPHHPY 247 (258)
T ss_pred cccccccccCCCCch
Confidence 998887766554444
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=289.96 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=136.1
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+++|++|+||++++||+++|+||||||||||+|++. +++|++.++|..... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc----ccccEEEEhH-----------
Confidence 467999999999999999999999999999999985 479999998863211 1345888887
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVVYMDEPSTGLDPASR 420 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~--p~lllLDEPtsgLD~~~r 420 (568)
.++++.++|.. ...++++.+||||||||+++|+|++.+ |+++||||||+|||+.++
T Consensus 68 ---------------------~~~l~~~~L~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 68 ---------------------LQFLIDVGLGY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred ---------------------HHHHHHcCCCc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 24678888862 237899999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 421 NNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 421 ~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+.+.+.+++.. +|+|||++||++++++ .|||+++|.+|+-
T Consensus 126 ~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 126 NQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 99999999864 6999999999999985 7999999977543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=366.19 Aligned_cols=208 Identities=22% Similarity=0.385 Sum_probs=173.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++|+++.|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699 (1522)
T ss_pred cEEEEEeEEEcCCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------
Confidence 69999999999742 35699999999999999999999999999999999999999999999987
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH--HHHHHcCCCC---CCcccccCCCCChhHHHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--ESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~--~~l~~~~L~~---~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
++|||||++.+++ .|++||+.++... ..++.++.++ .+.+.++..+ +...+++..+||||||||++||||+
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999886 5999999985321 1122111111 1122222211 1235677889999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR---AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~---~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
..+|++++|||||++||+..++.+++.+.+ ..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHhc
Confidence 999999999999999999999999999864 3468999999999999876 999999999999999999998754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=282.09 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=170.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++.+||+-.-+ +...+.++||++.+||.+-|.||||||||||+|+|+|+.+|++|+|+++|..+...++..++
T Consensus 2 ~L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 2 MLEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred cchhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHH
Confidence 355677776655 46799999999999999999999999999999999999999999999999999887777778
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+-|+--.+.+-+.||++|||.|+.++.+-. ....+.++++.+||. +..|.++++||.|||||++|||-.+..++
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~--g~~dlp~~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLA--GLEDLPVGQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcc--cccccchhhcchhHHHHHHHHHHHcCCCC
Confidence 8888888899999999999999999987741 235688899999997 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-hcCCceEEEEcCCHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEA 446 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~-~~~g~tiil~tH~~~e~ 446 (568)
+.|||||+++||+.++..+-.++.. ..+|--||++||..--+
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 9999999999999999999999987 46789999999985443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=343.84 Aligned_cols=217 Identities=20% Similarity=0.253 Sum_probs=168.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCceEEEECCeeCCC--
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYVQGLDIRT-- 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~---~p~~G~i~i~G~~i~~-- 317 (568)
..+|+++|++|.|++ +.+|+|+||+|.+||++||+||||||||||+|+|+|.. .|++|+|.+.++++..
T Consensus 175 ~~~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 346999999999973 46999999999999999999999999999999999964 6889999865544211
Q ss_pred --c--------H---HHhhcceEEEcCCCCCCCCCCHHHH-----------------HH-HHhhhcCCCchhHHHHHHHH
Q 008362 318 --D--------M---DRIYTSMGVCPQEDLLWETLTGREH-----------------LL-FYGRLKNLKGPALTQAVEES 366 (568)
Q Consensus 318 --~--------~---~~~r~~ig~~~Q~~~l~~~lTv~e~-----------------l~-~~~~l~~~~~~~~~~~~~~~ 366 (568)
. . ...++.+++++|++.+... ++.++ +. ...++........+.++.++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~ 327 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASI 327 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 0 0 1123447888876443221 11111 11 01111111122445678888
Q ss_pred HHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q 008362 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 367 l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~ 446 (568)
++.+|+.+ +..++++.+||||||||++||+||+.+|+++||||||++||+.+++.+.+.|++. +.|||++|||++++
T Consensus 328 L~~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l 404 (718)
T PLN03073 328 LAGLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFL 404 (718)
T ss_pred HHHCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 99999863 3578999999999999999999999999999999999999999999999999876 68999999999999
Q ss_pred HHhCCEEEEEECCEEE-eecCHHH
Q 008362 447 EALCDRLGIFVDGSLQ-CIGNPKE 469 (568)
Q Consensus 447 ~~l~dri~il~~G~l~-~~g~~~~ 469 (568)
..+|||+++|++|++. ..|+.++
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999999996 5676543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=364.10 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=173.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++|+++.|+++. ++++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. .+|+
T Consensus 614 ~I~~~~vsF~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDSKT---SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRG 679 (1495)
T ss_pred cEEEEeeEEEcCCCC---CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecC
Confidence 599999999997421 35799999999999999999999999999999999999999998763 2467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
+|+||||++.+|+. |++||+.|+.. . .+++.+++++.++|.+ +.....+..+||||||||++|
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~---~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD---F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc---c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 89999999999986 99999998632 1 1345666666666531 112334456799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||+..+|+++|||||||+||+...+++.+. ++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHhc
Confidence 9999999999999999999999999988765 555567999999999998875 5999999999999999999998754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=362.58 Aligned_cols=193 Identities=21% Similarity=0.358 Sum_probs=161.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +++||||++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4689999999999999999999999999999999999999999999988 38999999999986 9999
Q ss_pred HHHHHhhhcCCCchhHHHH-----HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 344 HLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
|+.|+... ..+..++. +++.++.+...+......+..+||||||||++||||++.+|+++||||||+|||+.
T Consensus 506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99985322 11111111 12223333221112345678899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 419 SRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 419 ~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.++.+++. +.+..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 583 ~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 583 TEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999985 5666679999999999999875 999999999999999999998753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=363.40 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=174.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eEEEECCeeCCCcHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-G~i~i~G~~i~~~~~~~r 323 (568)
.|+++|+++.|+.+. ++++|+|+||++++||.++|+||+|||||||+++|.|.++|++ |+|.+ |
T Consensus 614 ~I~~~nvsf~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~ 678 (1622)
T PLN03130 614 AISIKNGYFSWDSKA---ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------R 678 (1622)
T ss_pred ceEEEeeEEEccCCC---CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------c
Confidence 599999999997421 3569999999999999999999999999999999999999999 89974 4
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++|+||||++.+++. |++||+.|+... .+++.+++++.++|.+ +.....+..+||||||||++
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~~-------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSPF-------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCcc-------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 579999999999986 999999986321 2345666777666532 11233455679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~-~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||+..+|+++|||||||+||+...+++.+ +++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999888765 5665667999999999998876 5999999999999999999998754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=323.00 Aligned_cols=201 Identities=27% Similarity=0.373 Sum_probs=173.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++|+++.|+ .+..++|+||++.+|+++||+|+||||||||||+|+|...|++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYG------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeC------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 3699999999997 368999999999999999999999999999999999999999999987642
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hcC-----------------------------CCchhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR-LKN-----------------------------LKGPALTQAVEESLKSVNLF 373 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~-----------------------------~~~~~~~~~~~~~l~~~~L~ 373 (568)
-++||++|++.+.+..||.+.+.-... +.. ...-+.+.++..++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 248999999999999999997764321 000 00112245677888889987
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE
Q 008362 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 453 (568)
Q Consensus 374 ~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri 453 (568)
+ . ++++++||||||+|++||+||..+|++|+|||||++||..+...+-+.|++.+ | |+|++|||-+..+.+|++|
T Consensus 146 ~--~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 146 D--E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred c--c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhhe
Confidence 4 3 99999999999999999999999999999999999999999999999998654 4 9999999999999999999
Q ss_pred EEEECCEEEeec
Q 008362 454 GIFVDGSLQCIG 465 (568)
Q Consensus 454 ~il~~G~l~~~g 465 (568)
+-+++|++...+
T Consensus 221 ~~ld~g~l~~y~ 232 (530)
T COG0488 221 LELDRGKLTPYK 232 (530)
T ss_pred EEecCCceeEec
Confidence 999999887654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.01 Aligned_cols=220 Identities=25% Similarity=0.379 Sum_probs=188.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEECCeeCCCcHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p~~G~i~i~G~~i~~~~~~ 321 (568)
+....+|+.+.-..++ .+++.|+|||=-+.||-.+||+|+|||||||||++|+|=.. -.+|+|.|+|.+... +.
T Consensus 786 ~V~~w~dl~~~~~~qG--~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~t 861 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG--GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ET 861 (1391)
T ss_pred ceEEEEeCCccccccc--cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hh
Confidence 3455677766554322 35789999999999999999999999999999999999643 357999999998653 45
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCC----CChhHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGK----YSGGMKRRLS 394 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~----LSgG~kqrl~ 394 (568)
.+|.+|||-|+|...+.+||+|-|.|.+.+|. ++.++..+.++++++.++|+ +++|.-++. ||.+|||||.
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~--~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK--EYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch--hhhhhhccCCCCCCCHHHhceee
Confidence 67889999999998899999999999998873 34455567899999999997 488888887 9999999999
Q ss_pred HHHHHcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEEC-CEEEeecCHHH
Q 008362 395 VAISLIGNP-KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIGNPKE 469 (568)
Q Consensus 395 la~Al~~~p-~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~-G~l~~~g~~~~ 469 (568)
||.-|+.+| .||+|||||||||..+.-.+.+.++++ +.|+||+.|-|... ++-+..||+++|++ |+.+..|++.+
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999 999999999999999999999999996 67999999999986 55556899999985 69999999754
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=263.85 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=173.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~ 321 (568)
++.++|++.+-++ .-.|-|+|++|.+|||+.|+||+|||||||+.-+.|.+.+. +|++.++++++..- ..
T Consensus 2 ~l~l~nvsl~l~g------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l-Pa 74 (213)
T COG4136 2 MLCLKNVSLRLPG------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML-PA 74 (213)
T ss_pred ceeeeeeeecCCC------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc-ch
Confidence 4778999987764 46899999999999999999999999999999999998875 89999999998653 34
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHH--hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFY--GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~--~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++++|+.+|++.|||.++|.+|+.|. ..+|| +..++.++.+|++.||. +..++.+.+||||||-|+++-|+|
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG---~aRr~~a~aAL~~~gL~--g~f~~dP~tlSGGQrARvaL~R~L 149 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLD--GAFHQDPATLSGGQRARVALLRAL 149 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCccccc---HHHHhhHHHHHHHhccc--hhhhcChhhcCcchHHHHHHHHHH
Confidence 578999999999999999999999874 34444 45567788999999997 588999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+..|+.++||||+|.||..-|.++.+..-. .+ .|...+++|||.+.+. ...||+-|
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 999999999999999999999999998754 54 5999999999999988 35565544
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=268.88 Aligned_cols=214 Identities=21% Similarity=0.303 Sum_probs=187.4
Q ss_pred CeEEEEeEEEEcCCCCC-CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee----CCC-
Q 008362 244 HAIISDNLRKIYPGRDG-NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD----IRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~-~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~----i~~- 317 (568)
..+.++|++|+|--+.. .-.-++++|+||+++.|||++|=||+||||||++|+|-|.+.|++|+|.+.-.. +..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 35889999999953321 124579999999999999999999999999999999999999999999996432 211
Q ss_pred cH---HHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 318 DM---DRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 ~~---~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
.+ -++ |+.|||+.|+-...|..+..|-+.-...-+|.+.+..+.++..+|.++++.+ ..++-.+.++|||+|||+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe-rLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE-RLWSLAPATFSGGEQQRV 161 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-HHhcCCCcccCCchheeh
Confidence 11 223 4579999999888899999998888887889999999999999999999985 688999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
.|||.++.|=++++|||||+.||..+|+.+.++|++.| +|.+++=+-||-+.=+..|||+..|..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999875 699999999999988999999988754
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=301.54 Aligned_cols=216 Identities=23% Similarity=0.440 Sum_probs=185.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.+...|+++.|.+ ++++|+++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|++. ..+.+|
T Consensus 262 ~v~F~~V~F~y~~-----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR 336 (497)
T COG5265 262 AVAFINVSFAYDP-----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336 (497)
T ss_pred eEEEEEEEeeccc-----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHH
Confidence 5889999999975 5789999999999999999999999999999999999999999999999999975 446689
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccccCC----CCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQAG----KYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~~----~LSgG~kqrl~ 394 (568)
+.||.+||+..||.+ |...|+.+...- .+ .+++..+.+...+.+ .+-.+..++ .|||||||||+
T Consensus 337 ~aIg~VPQDtvLFND-ti~yni~ygr~~--at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 337 RAIGIVPQDTVLFND-TIAYNIKYGRPD--AT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred HHhCcCcccceehhh-hHHHHHhccCcc--cc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 999999999999998 999999874211 11 223333333333210 012334444 69999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||+++.+|++++|||.||+||....+++...|++..+|+|-+++.|.+..+.. ||.|++|++|++++.|+.++|.++
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999876 999999999999999999999887
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=284.12 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=140.3
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCceEEEEC-C------ee---CCC-cHHHhh-cceEEE
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQ-G------LD---IRT-DMDRIY-TSMGVC 329 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~~p~~G~i~i~-G------~~---i~~-~~~~~r-~~ig~~ 329 (568)
+..+|+|+||+|++||++||+||||||||||+ ..+.+ +|++.+. + .. +.. +..+.+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 44431 3332211 0 00 100 111111 234455
Q ss_pred cCCCC--CCCCCCHH---HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC-
Q 008362 330 PQEDL--LWETLTGR---EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP- 403 (568)
Q Consensus 330 ~Q~~~--l~~~lTv~---e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p- 403 (568)
+|++. +.+..++. |...+...+. ......++ .+.++.+++.+ ...++++.+||||||||+++|+||+.+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 55543 33444544 3333322221 12222333 56899999963 2579999999999999999999999998
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeec
Q 008362 404 -KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIG 465 (568)
Q Consensus 404 -~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g 465 (568)
+++||||||+|||+.+++.+.+.++++ ++|.|||++||++++++ +|||+++| ++|+++++|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 599999999999999999999999986 46999999999999985 89999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=335.55 Aligned_cols=221 Identities=21% Similarity=0.389 Sum_probs=193.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 321 (568)
...|+++|++.+|... -..+|+||||+|++||-+||+|+.|||||||+++|-++..|++|+|.|||.|+.+ ...+
T Consensus 1136 ~G~I~f~~~~~RYrp~----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred CCeEEEEEeEEEeCCC----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHH
Confidence 3469999999999753 3579999999999999999999999999999999999999999999999999976 7789
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccc----cCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADK----QAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~----~~~~LSgG~kqr 392 (568)
+|++++++||+|.||.+ |+|.||.=+... .++++-++||+++|.+ ....|. -..++|-||||.
T Consensus 1212 LRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred HHhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 99999999999999998 999999754322 2456677777776632 011233 335799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+||||+.++||++|||+||++|+++-..+.+.|++.=+++|||.+-|.++.+.. ||||+||++|++++.|+|++|.+
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999999999999987789999999999999987 99999999999999999999987
Q ss_pred hcCC
Q 008362 473 RYGG 476 (568)
Q Consensus 473 ~~~~ 476 (568)
+.+.
T Consensus 1363 ~~~S 1366 (1381)
T KOG0054|consen 1363 DKDS 1366 (1381)
T ss_pred CCcc
Confidence 6443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=346.81 Aligned_cols=190 Identities=24% Similarity=0.405 Sum_probs=159.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++||||||++.+++ .|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHHH
Confidence 569999999999999999999999999999999999999999999753 46999999999886 59999
Q ss_pred HHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 008362 344 HLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD 416 (568)
|+.++... ..+...+ .+++.++.+ |+. ...+++..+||||||||++||||++.+|+++||||||++||
T Consensus 740 nI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 740 NILFFDEE---DAARLADAVRVSQLEADLAQLGGGLE--TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred HHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccch--HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 99985321 1111111 223344444 553 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 417 PASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 417 ~~~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+..++.+++. +....+|+|+|++||+++.+. .||||++|++|++.+.|+.+++.+
T Consensus 815 ~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 815 AHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 9999988874 344446899999999999986 599999999999999999999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=292.50 Aligned_cols=213 Identities=22% Similarity=0.404 Sum_probs=187.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--CcHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~ 320 (568)
.+.++++|++.. ..++|+||++++|||+||-|-=|||+|-+++.|.|..++++|+|.++|+++. +..+
T Consensus 261 ~~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 261 EPVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred CcEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 346778888642 2589999999999999999999999999999999999999999999999874 3456
Q ss_pred HhhcceEEEcCC---CCCCCCCCHHHHHHHHhhhcC------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 321 RIYTSMGVCPQE---DLLWETLTGREHLLFYGRLKN------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 321 ~~r~~ig~~~Q~---~~l~~~lTv~e~l~~~~~l~~------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
.++..|+|||.+ ..++..+++.+|+.+. .++. ++.+..++.++++.+.+++.. .-.+.++++||||+||
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~-~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehH-hhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhh
Confidence 788899999986 5789999999999886 2322 344556677889999999864 4568999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+.|||.|..+|++|||||||.|+|..++.++.++|+++ ++|++||++|-+|+|+..+||||++|++|+++..-+.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999986 6899999999999999999999999999999875443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=298.15 Aligned_cols=205 Identities=25% Similarity=0.323 Sum_probs=178.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|++|.|++ .+.+++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------- 384 (530)
T ss_pred CeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------
Confidence 467999999999974 267999999999999999999999999999999999999999999986531
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
-++||.+|+. .+.++.|+.|++.-... ...+..+...|..+++.. +...++++.||||||.||.+|+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCCh-HHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 3589999986 45578899999875421 111578899999999985 67799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEee-cCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~-g~~~~l~~ 472 (568)
+|.+|||||||+.||..++..+-+.|.... -|||++|||-+.++.+|++++.+.+ ++... |+.++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999988764 5999999999999999999999998 66555 77766554
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=252.99 Aligned_cols=132 Identities=35% Similarity=0.652 Sum_probs=118.5
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. .....++.++|++|++.+++.+|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999976 455678899999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccC----CCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA----GKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~----~~LSgG~kqrl~la~Al~~~p~lllLDEPts 413 (568)
...++++++++.+++.+ ..++.+ .+||||||||++||+|++.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------ccccccccccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456788888888752 344444 9999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=272.84 Aligned_cols=196 Identities=20% Similarity=0.278 Sum_probs=157.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh--------CC--CCCCc-----------eEEEECCeeCCCc----
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI--------GI--TRTTS-----------GTAYVQGLDIRTD---- 318 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~--------Gl--~~p~~-----------G~i~i~G~~i~~~---- 318 (568)
...|+|+|++|+.|+.+++.|++|||||||++.+. +. ..|.. --|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998652 11 11221 1467777666321
Q ss_pred H-------HHhhc----------------ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 008362 319 M-------DRIYT----------------SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375 (568)
Q Consensus 319 ~-------~~~r~----------------~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~ 375 (568)
+ +.+|+ .++|..++...+..||+.|++.|+..+++ .+++.++++.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~- 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGY- 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCch-
Confidence 1 12222 24555566556678999999999876642 245678999999962
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCC
Q 008362 376 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 376 ~~~~~~~~~LSgG~kqrl~la~Al~~~---p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~d 451 (568)
...++++.+||||||||++||+||+.+ |++++|||||+|||+..++.+++.++++. +|.|||++||++++++ .||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD 239 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CAD 239 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 247899999999999999999999996 79999999999999999999999999864 6999999999999986 699
Q ss_pred EEEEE------ECCEEEeecCH
Q 008362 452 RLGIF------VDGSLQCIGNP 467 (568)
Q Consensus 452 ri~il------~~G~l~~~g~~ 467 (568)
+++.| ++|++++.|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-32 Score=266.55 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=137.6
Q ss_pred ee-eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---------eEEEECCeeCCCcHHHhhcceEEEcCCCCC
Q 008362 266 AV-NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---------GTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335 (568)
Q Consensus 266 al-~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~---------G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l 335 (568)
-+ +++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|+++... ..++++|++||++..
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~ 87 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDG 87 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCC
Confidence 35 6789999999 999999999999999999999987653 4677778776432 235789999999876
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCC
Q 008362 336 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEP 411 (568)
Q Consensus 336 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEP 411 (568)
+ + +.. ..++++++++. . +..++++.+||||||||+++|+|++ .+|++++||||
T Consensus 88 ~----------~-----~~~---~~~~~~~~l~~---~--~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 88 R----------Y-----SII---SQGDVSEIIEA---P--GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred c----------e-----eEE---ehhhHHHHHhC---C--CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 6 1 110 12456677776 2 3678999999999999999999987 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 412 STGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
|+|||+.+++.+++.|+++.++.|||++||++++++ .|||++.|..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999999999999999999876899999999999875 7999998864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=312.71 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=179.7
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
....++++|.++...+. ...+.|+||||+|++|+.+|++|+-|||||+|+.+|.|..+..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~---~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE---SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC---CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 34579999999998752 1345999999999999999999999999999999999999999999999984
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 392 (568)
++||||.+.+++. |++||+.|+..+ .+++.++.++.+.|.+ ......+.-+||||||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 8999999999987 999999986433 2456666777776642 123455666899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+++|||+-.++++++||.|.|++|....+.+.+- |+..-++||+|++||.++.... ||.|++|++|++...|+.+|+.
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHH
Confidence 9999999999999999999999999998888775 5456789999999999988875 9999999999999999999998
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
+.
T Consensus 731 ~~ 732 (1381)
T KOG0054|consen 731 KS 732 (1381)
T ss_pred hc
Confidence 54
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-33 Score=273.76 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=149.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh-
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r- 323 (568)
.|+++|.. .|++ +.+++++++ +++||+|||||||||++++|+ +++|.+.. ..|
T Consensus 5 ~l~l~nfk-~~~~------~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG------EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQ 58 (212)
T ss_pred EEEEECcc-cCCC------CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----Hhhh
Confidence 37778876 7763 569999987 899999999999999999997 44555432 223
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHH--HHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--------~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
+++|+++|+..+++.+|+.|++.++... +|...++... ...++++.++|. +..++++.+||+|||||+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~--~~~~~~~~~lS~G~~~r~ 136 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP--KKSWKNISNLSGGEKTLS 136 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc--cccccchhhcCHHHHHHH
Confidence 5799999999999999999998887654 3332221111 125666778886 467889999999999999
Q ss_pred HHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 394 SVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 394 ~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++|+|++. +|++++|||||+||||.+++.+++.+++.+++.|+|++||+ +++..+|||+++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR-NNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc-HHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998778899999999 567789999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=268.86 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=145.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------CCCCCCce---
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------GITRTTSG--- 306 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------------Gl~~p~~G--- 306 (568)
|+++|- |.|+ ++.++++++ |++++|+||||||||||+++|+ +++.+++|
T Consensus 4 i~~~nf-ksy~------~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~ 71 (243)
T cd03272 4 VIIQGF-KSYK------DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV 71 (243)
T ss_pred EEEeCc-cCcc------cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC
Confidence 445554 3464 356888886 8999999999999999999998 55666666
Q ss_pred -----EEEECCeeC----CCcHHHhhcceEEEcCCCCCCC-CCCHHHHHHHHhhhcCCCchhHH--HHHHHHHHHcCCCC
Q 008362 307 -----TAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALT--QAVEESLKSVNLFH 374 (568)
Q Consensus 307 -----~i~i~G~~i----~~~~~~~r~~ig~~~Q~~~l~~-~lTv~e~l~~~~~l~~~~~~~~~--~~~~~~l~~~~L~~ 374 (568)
++.+++.+- ......+++.+|++||+..+++ ..|..|...+.... ++...... ....+..+.+++.
T Consensus 72 ~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~- 149 (243)
T cd03272 72 MSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMK- 149 (243)
T ss_pred ceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcc-
Confidence 666666321 1222346778999999988887 46877766655443 54332100 0011233334554
Q ss_pred CCcccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhC
Q 008362 375 GGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 375 ~~~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~ 450 (568)
+..++++.+||||||||++||+|++ .+|+++++||||+||||.+++.+++.+++..++++||++||+. ++..+|
T Consensus 150 -~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~~~~ 227 (243)
T cd03272 150 -QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELLEVA 227 (243)
T ss_pred -ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHhhC
Confidence 3578899999999999999999996 3689999999999999999999999999876688888888885 577899
Q ss_pred CEEEEEE
Q 008362 451 DRLGIFV 457 (568)
Q Consensus 451 dri~il~ 457 (568)
||+++|.
T Consensus 228 d~i~~l~ 234 (243)
T cd03272 228 DKFYGVK 234 (243)
T ss_pred CEEEEEE
Confidence 9999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=262.20 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=142.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCe-eCCCc--H-HHhhcceEEEcCCC---------CCCCCCCHH
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGL-DIRTD--M-DRIYTSMGVCPQED---------LLWETLTGR 342 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~-~i~~~--~-~~~r~~ig~~~Q~~---------~l~~~lTv~ 342 (568)
..+++|+||||||||||+++|+|++.|+ .|+++..|. ++... . ...+.++++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999887 468888776 43211 1 11235799999985 356678999
Q ss_pred HHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC------------------CcccccCCCCChhHHHHHHHHHHHc--
Q 008362 343 EHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG------------------GVADKQAGKYSGGMKRRLSVAISLI-- 400 (568)
Q Consensus 343 e~l~~~~~l~~-~-~~~~~~~~~~~~l~~~~L~~~------------------~~~~~~~~~LSgG~kqrl~la~Al~-- 400 (568)
+++......+. . ..+...+++.++|+.+++..+ +..++++.+||||||||+++|+|++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88865432211 1 123345788999999998521 2456889999999999999999998
Q ss_pred --CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 401 --GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 401 --~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
.+|+++++||||+|||+..++.+++.|++..+|.+||++||+ .++...|||++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 578999999999999999999999999988779999999999 55566799997654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=261.27 Aligned_cols=221 Identities=22% Similarity=0.374 Sum_probs=193.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC-C--CcH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-R--TDM 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i-~--~~~ 319 (568)
...++++||+..=.. ...++++|||+|.+|||+||.|-.|-|.+.|+.+|+|+.+|.+|+|.++|+|+ . +..
T Consensus 255 ~~vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 568999999987542 25799999999999999999999999999999999999999999999999997 2 233
Q ss_pred HHhhcceEEEcCCC---CCCCCCCHHHHHHHHhhhc------C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 320 DRIYTSMGVCPQED---LLWETLTGREHLLFYGRLK------N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~------~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
+..+..+||+|++. .+-+++|+.||+.+...-+ + +...+.++...+++++++.-. .-...++++||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 44456899999975 6888999999998854321 2 455778888999999999863 34677899999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
+||+-+||-|..+|++|++.+||-|||..+.+.+.+.|.+. ++|++|+++|-++||+..+||||++|.+|+++...+++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 99999999999999999999999999999999999999886 56999999999999999999999999999999888776
Q ss_pred H
Q 008362 469 E 469 (568)
Q Consensus 469 ~ 469 (568)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-30 Score=253.97 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=140.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEe-CCcEEEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECC-eeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQG-LDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~-~Gei~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G-~~i~~~~~~ 321 (568)
.|+++|.. .|.+ -++++|+.. +|++++|+|||||||||++++|++ +.-+..+....+. .+.. ....
T Consensus 5 ~i~l~nf~-~y~~---------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE---------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGE 73 (213)
T ss_pred EEEEECCc-CcCC---------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCC
Confidence 47888888 6642 156667654 589999999999999999999996 4444445444331 0110 1122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.+..+++.+|++.. ..++.++. +.+.++..+.+ .++..++. ++.++++.+||||||||+++|+|++.
T Consensus 74 ~~~~v~~~f~~~~~--~~~~~r~~-------gl~~~~~~~~~--~l~~g~l~--~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 74 DTAEVSFTFQLGGK--KYRVERSR-------GLDYDQFTRIV--LLPQGEFD--RFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred ccEEEEEEEEECCe--EEEEEEec-------CCCHHHHHHhh--hhhhcchH--HHhcCCccccCHHHHHHHHHHHHHHh
Confidence 34569999998632 11222211 33333222211 23444454 46789999999999999999999984
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 402 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 402 ----------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
+|++++|||||+|||+.+++.+.+.+++++ +++|||++||++++++.+||++.+|++|.
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 679999999999999999999999998875 48999999999999999999999999985
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-30 Score=237.41 Aligned_cols=209 Identities=21% Similarity=0.319 Sum_probs=176.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|+...- -|-.+|.++..||+.-++||||||||||+-.++|++ |-+|+|.++|.++.. ...++.
T Consensus 3 l~qln~v~~~t----------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLA 71 (248)
T COG4138 3 LMQLNDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELA 71 (248)
T ss_pred eeeeccccccc----------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHH
Confidence 45666665432 467789999999999999999999999999999988 569999999999854 334455
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-- 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~-- 401 (568)
++-+|..|...-...|.|.+++.++- +.++....++++...++|+ ++..+.+++|||||.|||-+|...+.
T Consensus 72 rhRAYLsQqq~p~f~mpV~~YL~L~q-----P~~~~a~~i~~i~~~L~l~--DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 72 RHRAYLSQQQTPPFAMPVWHYLTLHQ-----PDKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHHHHHhhccCCcchhhhhhhhhhcC-----chHHHHHHHHHHHhhhccc--chhhhhhhhcCcccceeeEEeEEEEEec
Confidence 56688888776555688998887752 4456667888999999997 48999999999999999999987653
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 -----~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
..+++++|||.++||...+..+-.+|.+. .+|.+|||++||++-..+-+|++..++.|++...|..+++.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 34799999999999999988888888886 67999999999999999999999999999999999988753
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=240.58 Aligned_cols=164 Identities=24% Similarity=0.280 Sum_probs=129.2
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHH----hCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCC-----CCCCCCCH
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMM----IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTG 341 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l----~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~-----~l~~~lTv 341 (568)
++++.+| +++|+||||||||||+++| .|..+|++|.+..+...+.. ...+..+++++|++ .+...+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 4566677 9999999999999999999 49999988877622222222 13456799999987 34455678
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH------HHHHHHHcCCCCEEEEeCCCCCC
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR------LSVAISLIGNPKVVYMDEPSTGL 415 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr------l~la~Al~~~p~lllLDEPtsgL 415 (568)
.|++.+. + +.++++. .++++++||+||||| +++|+|++.+|+++++||||++|
T Consensus 94 ~~~~~~~------~----~~~~~~~-----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 94 LENVIFC------H----QGESNWP-----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred hhceeee------c----hHHHHHH-----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 8887542 1 1122222 267789999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 416 DPASRN-NLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 416 D~~~r~-~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
|+..++ .+.+++++.+ + |++||++||+++.++ .||+++.|.+.
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 999999 9999998864 4 899999999999875 69999988653
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=273.55 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=112.5
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---CEEEEeCCCCCC
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGL 415 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~lllLDEPtsgL 415 (568)
||+.|++.|+..+++. .+..+.++.+||.. ...++++.+||||||||+.||++|+.+| +++||||||+||
T Consensus 792 ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~-l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 792 MTVEEALEFFEAIPKI------ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred CcHHHHHHHHHhchhh------hHHHHHHHHCCCCc-ccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 7999999998766432 23467899999963 2468999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 416 DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 416 D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
|+..++.++++|+++ ++|.|||++||+++++. .||+++.| ++|++++.|+++++.+.
T Consensus 865 D~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 999999999999986 46999999999999986 69999999 79999999999998764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=282.35 Aligned_cols=213 Identities=20% Similarity=0.287 Sum_probs=160.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCce----E----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSG----T---- 307 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~---------~l~Gl~~p~~G----~---- 307 (568)
.++++|++. ..|+|+|++|++||++||.|+||||||||++ .|.|...+..+ .
T Consensus 600 ~L~l~~~~~-----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKATK-----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEecccc-----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 467777641 2699999999999999999999999999999 66775433111 1
Q ss_pred EEECCeeCCCc-----------HHHhh---------cce-----EEEcCC------------------------------
Q 008362 308 AYVQGLDIRTD-----------MDRIY---------TSM-----GVCPQE------------------------------ 332 (568)
Q Consensus 308 i~i~G~~i~~~-----------~~~~r---------~~i-----g~~~Q~------------------------------ 332 (568)
|.|+-..+... .+.+| +.. .+.++.
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 22332222110 01222 111 112221
Q ss_pred --------CCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHc
Q 008362 333 --------DLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 333 --------~~l~~~lTv~e~l~~~~~l---~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
...|..+||.|+|.+...- .....++..+++ ++++.+||.+ . .++++.+||||||||++||+||+
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~--l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDY--LPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcc--hhhcCccccCCHHHHHHHHHHHHHh
Confidence 0256788999999885431 122334555666 5889999963 4 69999999999999999999997
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEE------CCEEEeecCHHHH
Q 008362 401 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNPKEL 470 (568)
Q Consensus 401 ---~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~------~G~l~~~g~~~~l 470 (568)
.+|+++||||||+|||+.+++.++++|+++ ++|.|||++||+++++ ..|||+++|. +|++++.|+++++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 699999999999999999999999999986 4699999999999999 7899999996 7999999999998
Q ss_pred HH
Q 008362 471 KA 472 (568)
Q Consensus 471 ~~ 472 (568)
..
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 65
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=245.89 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=168.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|.. +.--|..||++|++||++-|+|.|||||||+++.|+|+++|++|+|++||+++.. +.++.
T Consensus 321 ~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 321 KTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred cceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHH
Confidence 46999999999974 2256899999999999999999999999999999999999999999999999965 67788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-Ccccc--cCCCCChhHHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADK--QAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~--~~~~LSgG~kqrl~la~Al 399 (568)
|+-++-++-|..||+.+-..| .+...+.++..|+++.+.++ ...|. ..-.||.|||+|+++-.|+
T Consensus 396 R~LfSavFsDyhLF~~ll~~e------------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPE------------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCc------------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 888888888888877532222 11234567777877777531 12233 2347999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+-+.+|+++||=-+.-||.-||.+.+.+.- ++ +||||+.+|||-.-- ..|||+.-|++|++++.-
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 999999999999999999999999998764 55 699999999995543 469999999999997653
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=224.28 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=185.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEECCeeCCC-cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRT-DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~~G~i~i~G~~i~~-~~ 319 (568)
.+.++||+..+....| ...|++++|+++.+|||-||+|.+|||||-..|.|+|..+- |.....+++.|+-. .+
T Consensus 3 LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 4667888888865433 46799999999999999999999999999999999998753 55667777777633 22
Q ss_pred HH----hhcceEEEcCCC--CCCCCCCHHHHHHHH--h-hhcCCCch---hHHHHHHHHHHHcCCCC-CCcccccCCCCC
Q 008362 320 DR----IYTSMGVCPQED--LLWETLTGREHLLFY--G-RLKNLKGP---ALTQAVEESLKSVNLFH-GGVADKQAGKYS 386 (568)
Q Consensus 320 ~~----~r~~ig~~~Q~~--~l~~~lTv~e~l~~~--~-~l~~~~~~---~~~~~~~~~l~~~~L~~-~~~~~~~~~~LS 386 (568)
.+ +-+.|+++||++ .|.|.-++...|.-. . ..+|.-.+ -.++++-++|.++|+.+ ++....++.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22 234688999997 455654544333211 0 11221111 13467788999999963 234567899999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
-|+-|||.||+|++.+|+++|.||||+.+||..+.+++.++.++. +|.||++++||+..+.+.|||+-+|.-|+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999864 589999999999999999999999999999999
Q ss_pred cCHHHHHHhcCCcEE
Q 008362 465 GNPKELKARYGGSYV 479 (568)
Q Consensus 465 g~~~~l~~~~~~~~~ 479 (568)
+..+++.+...+.|+
T Consensus 241 a~~e~l~~~PhHPYT 255 (330)
T COG4170 241 APSEELVTMPHHPYT 255 (330)
T ss_pred cchhHHhcCCCCchH
Confidence 999999887666664
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=248.39 Aligned_cols=220 Identities=20% Similarity=0.327 Sum_probs=163.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE--CCeeCCCcH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV--QGLDIRTDM 319 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i--~G~~i~~~~ 319 (568)
....+++.|+++.|.+ +..++|++|++.+|+-+||+|+|||||||+|++|+|-..|..-++-+ ..+++....
T Consensus 72 ~s~dvk~~sls~s~~g------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccccceeeeeeeccCC------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 3457999999999974 68999999999999999999999999999999999998886655433 223322111
Q ss_pred -HH----------hhcceEEEcCCCCCC-CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 320 -DR----------IYTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 320 -~~----------~r~~ig~~~Q~~~l~-~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
.. .++++-|.-.+-... ++---.+-...+.++.....+..+.++.++|..+|... +..++.+.+|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~-~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS-EMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH-hHHHHHhhccCc
Confidence 11 111111111110000 11011112222333333445556667777888887764 678999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEE-EeecC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-QCIGN 466 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l-~~~g~ 466 (568)
|+|+|+++||||..+|++|+|||||+|||+.++..+-+.|.+..++ ++++++|+-+.+..+|..|+-|.++++ ...|+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCC
Confidence 9999999999999999999999999999999999999999887655 999999999999999999999999995 45566
Q ss_pred HHH
Q 008362 467 PKE 469 (568)
Q Consensus 467 ~~~ 469 (568)
.+.
T Consensus 304 ydq 306 (614)
T KOG0927|consen 304 YDQ 306 (614)
T ss_pred HHH
Confidence 544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=250.76 Aligned_cols=207 Identities=18% Similarity=0.273 Sum_probs=170.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.+.+.++|+++.|.+ +..+.++++|.++.++.++++||||||||||+|+++|.+.|+.|.|.-.-+.
T Consensus 387 ~pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-------- 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-------- 453 (614)
T ss_pred CCeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc--------
Confidence 467999999999974 2369999999999999999999999999999999999999999998654332
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 323 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 323 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+++--|+- .+.-+.++.|++.=- . ++....+.+..++.++||+. +..+.+.++||+|||+||.+|++++
T Consensus 454 --~~~~y~Qh~~e~ldl~~s~le~~~~~--~---~~~~~~e~~r~ilgrfgLtg-d~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 454 --KLPRYNQHLAEQLDLDKSSLEFMMPK--F---PDEKELEEMRSILGRFGLTG-DAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred --cchhhhhhhHhhcCcchhHHHHHHHh--c---cccchHHHHHHHHHHhCCCc-cccccchhhcccccchhHHHHHHHh
Confidence 244445542 344456777765421 1 22334577899999999983 6788999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEE-EeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-QCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l-~~~g~~~~l~~ 472 (568)
..|.+|+|||||+|||..+...+.+.|.+.. -+||++|||+..+.+++++|.+..+|++ ...|+...-+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 9999999999999999999999999887654 4699999999999999999999998865 45677765544
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=225.32 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=128.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.++++++++.+| +.+|+|||||||||++..|......+.. ....|..+.. ........|++.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 567888898887 8899999999999999998754332221 1111321110 001113458899998776651
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPAS 419 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al----~~~p~lllLDEPtsgLD~~~ 419 (568)
. ......+.++++++. . +..++++++||+|||||++||+|+ +.+|++++|||||+|||+..
T Consensus 84 ------~----~~~~~~~~~~~~l~~---~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 ------P----LCVLSQDMARSFLTS---N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred ------c----CCHHHHHHHHHHhcc---c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 1 111123567777776 3 368899999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHh-cC---CceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 420 RNNLWNVVKRA-KQ---GRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 420 r~~i~~~l~~~-~~---g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++.+.+.|++. ++ +.||+++||+++++..+ |||.||..++
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 99999999885 32 36999999999999985 9999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=258.36 Aligned_cols=125 Identities=24% Similarity=0.359 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC---CCCEEEEeCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---NPKVVYMDEPSTG 414 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~---~p~lllLDEPtsg 414 (568)
+||+.|.+.|+..++++ .+..++++.+||.. ...++++.+|||||+||+.||++|+. +|+++||||||+|
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~-l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCc-hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 47888888888765432 13457889999962 24689999999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHH
Q 008362 415 LDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKEL 470 (568)
Q Consensus 415 LD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l 470 (568)
||+..++.+++.|+++. +|.|||++||+++++. .||++++| ++|+++..|+++++
T Consensus 862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999874 6999999999999986 69999999 79999999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-26 Score=226.60 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=131.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-C-CCcH----
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-I-RTDM---- 319 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-i-~~~~---- 319 (568)
|+++|. |.|.+ .. +++..++ +++|+|||||||||++++|+++..++.|++...+.+ + ....
T Consensus 4 i~l~nf-~~~~~------~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~ 70 (247)
T cd03275 4 LELENF-KSYKG------RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKP 70 (247)
T ss_pred EEEECc-cccCC------Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccC
Confidence 677776 66642 11 2333344 999999999999999999999998888887655421 1 1110
Q ss_pred --HHhhcceEEEcCCCCC--CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------------------
Q 008362 320 --DRIYTSMGVCPQEDLL--WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-------------------- 375 (568)
Q Consensus 320 --~~~r~~ig~~~Q~~~l--~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-------------------- 375 (568)
....-.+.+..|++.. +. .++.+....+ .+.+ .....+.++++++.+|+...
T Consensus 71 ~~~~~~v~~~f~~~~~~~~~~~-~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 71 DSNSAYVTAVYEDDDGEEKTFR-RIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCceEEEEEEEEcCCCcEEEEE-EEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 1122234444444321 11 1111111100 1122 11223456788888888420
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhC
Q 008362 376 GVADKQAGKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 376 ~~~~~~~~~LSgG~kqrl~la~Al~~~----p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~ 450 (568)
...++++.+||||||||++||+|++.+ |+++||||||+|||+..++.+.+.|++.. +|.+||++||+.+.. ..|
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~ 225 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKA 225 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhC
Confidence 122455689999999999999999864 99999999999999999999999999875 489999999997765 579
Q ss_pred CEEEEEEC
Q 008362 451 DRLGIFVD 458 (568)
Q Consensus 451 dri~il~~ 458 (568)
||+++|..
T Consensus 226 d~i~~~~~ 233 (247)
T cd03275 226 DALVGVYR 233 (247)
T ss_pred CeEEEEEe
Confidence 99998874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=228.11 Aligned_cols=188 Identities=26% Similarity=0.341 Sum_probs=151.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..++-.+++|.||+. .|+==.=+++.||++|++||||-||||+.++|+|.++|++|. ..+
T Consensus 341 ~lv~y~~~~k~~g~F-------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~--------- 400 (591)
T COG1245 341 TLVEYPDLKKTYGDF-------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED--------- 400 (591)
T ss_pred eeeecchheeecCce-------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------
Confidence 356677888888742 333334467788999999999999999999999999999998 222
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
-+++|=||.-.--.+.||++.|.-..+-. ..... --.++++-++|+ +..++++.+||||+.|||+||.||..++
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLE--DLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchH--HHHhcccccCCchhHHHHHHHHHhcccc
Confidence 24889999754445679999876533221 11111 234567778886 4889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
++.+||||++-||.+.|-.+-+.|++. ..++|.+++.||+-.++-++||+++.+
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999999999984 468999999999999999999998875
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=235.86 Aligned_cols=190 Identities=25% Similarity=0.339 Sum_probs=158.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...|+++||+..-+. .+..|+++++++++||-+-|.||||||||||+|+|+|+-|--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 468999999999875 35799999999999999999999999999999999999999999886541
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc------cCCCCChhHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 396 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~~LSgG~kqrl~la 396 (568)
-..+-|+||.|.+... |.+|-+.++...... .++++.++|.++||.+ ..++ =-..||+||||||++|
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~----~d~~l~~vL~~vgL~~--L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPDF----SDAELVAVLHKVGLGD--LAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCCC----ChHHHHHHHHHcCcHH--HHHHHhccCcHhhhcChhHHHHHHHH
Confidence 1346799999998887 999999876443222 2456788899999863 3222 2346999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
|.++++|++++|||.|++||+.+...+.+++++.-.+.|||-++|.-.. ..+.++.+-
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl-~~~h~~~l~ 585 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL-WNFHSRQLE 585 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh-HHHHhhhee
Confidence 9999999999999999999999999999999987789999999998644 455555433
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=202.22 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=167.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH--
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-- 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~-- 320 (568)
..+|+++|++++|.. ..+++-|+|++++.|...-|+|.||||||||+|+|+|-.-.-.|.|.+.|.+.-.+..
T Consensus 11 ~~aievsgl~f~y~~-----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV-----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEeccc-----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 357999999999985 3589999999999999999999999999999999999776677999999988632110
Q ss_pred ----------HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 321 ----------RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 321 ----------~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
++++..++-- +-.+-.++++++.+ |. ..|... ++-+++++.+++. ..=+.+.+|-|||
T Consensus 86 ~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fg--V~g~dp----~Rre~LI~iLDId----l~WRmHkvSDGqr 153 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FG--VGGDDP----ERREKLIDILDID----LRWRMHKVSDGQR 153 (291)
T ss_pred ccCceeEecccccccccccc-cccccccccHHHHH-hh--ccCCCh----hHhhhhhhheecc----ceEEEeeccccch
Confidence 1222222222 22233456775533 32 223222 4556777777774 3346678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
|||.|++.|+..=++++|||-|-.||..+|..+.+.+++. .+|.||+..||-.+-.+....+++-|++|+++..-..+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999999874 46999999999999999999999999999999855555
Q ss_pred HHH
Q 008362 469 ELK 471 (568)
Q Consensus 469 ~l~ 471 (568)
.++
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 544
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=227.24 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=172.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCcc-ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEK-VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~-~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~ 320 (568)
..+.+++.++++.|.. +. +...+++++++.-+-.+.+|+||+||||++|++.|-..|++|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-------- 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--------
Confidence 3467999999999974 23 799999999999999999999999999999999999999999987664
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
|.+++|-.|+.+=+-++.+-+--.+.....|. .++++++.+..+||+. +.+.+.+.+||||||-||++|.+..
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g-~la~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG-ELALQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc-hhhhccccccCCcchhHHHHHHHhc
Confidence 56799999987655555565543333333444 3466788899999984 7888889999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe-ecCH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC-IGNP 467 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~-~g~~ 467 (568)
.+|.+|+|||||+.||..+-..+-+.|+... -.||++|||.+.+..+|+.+.+.++|++.- .|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999888888777654 459999999999999999999999999875 3444
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=227.20 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=152.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.-|.+.+.+..||+ +..|++-++++..|.-+||+||||+|||||||+|+. |.|.....+ +++|
T Consensus 79 ~Di~~~~fdLa~G~------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----qE~~ 141 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----QEVR 141 (582)
T ss_pred cceeeeeeeeeecc------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----hhee
Confidence 35888999999984 679999999999999999999999999999999997 555433321 1111
Q ss_pred cceEEEcC-CCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q-~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
. -+++- ...+-.++++.+.+.--..+ ... +..+...++|..+|.++ +...+++++||||.|-|+++||||..
T Consensus 142 g--~~t~~~~~~l~~D~~~~dfl~~e~~l---~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 142 G--DDTEALQSVLESDTERLDFLAEEKEL---LAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred c--cchHHHhhhhhccHHHHHHHHhhhhh---hccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHhc
Confidence 0 01111 12344454444444322111 111 22333444899999985 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe-ecCHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC-IGNPKE 469 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~-~g~~~~ 469 (568)
+|++|+|||||+.||..+...+-+.|+..+ .|+|++|||-......|..|+-+++-|+-. .|+.++
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999999999888765 899999999999999999999888877643 465544
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=245.29 Aligned_cols=210 Identities=24% Similarity=0.350 Sum_probs=179.2
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p---~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
...+++|+|.-+++|+.+-++||.|||||||++.++|-+.- ..|+|..||++...... ++.++|++|+|..++.|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 35799999999999999999999999999999999997543 35699999999865443 67899999999999999
Q ss_pred CHHHHHHHHhhhcCCC-------chhH-HHHHHHHHHHcCCCCCCcccc-----cCCCCChhHHHHHHHHHHHcCCCCEE
Q 008362 340 TGREHLLFYGRLKNLK-------GPAL-TQAVEESLKSVNLFHGGVADK-----QAGKYSGGMKRRLSVAISLIGNPKVV 406 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~-------~~~~-~~~~~~~l~~~~L~~~~~~~~-----~~~~LSgG~kqrl~la~Al~~~p~ll 406 (568)
||+|.|.|.++.++.. +++. ....+.+++.+||.+ .+|. ..+..|||||+||++|-+++++|+++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~--~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH--CADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh--hccceecccccccccCcccceeeeeeeeecCccee
Confidence 9999999999988641 1111 114678999999975 4444 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCH-HHHHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~-~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
+.||+|.|||..+.-++.+.|++.. .+.|.+++-|.. +++-.+-|.|++|.+|+++..|+.++.+.-|..
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~ 355 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFED 355 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHh
Confidence 9999999999999999999999863 377777776665 588889999999999999999999999876643
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=203.08 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=112.5
Q ss_pred eeeeeEEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 266 AVNGLSLALPSGE-CFGMLGPNGAGKTTFISMMI--------GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 266 al~~isl~i~~Ge-i~~LlG~NGaGKTTll~~l~--------Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
.+-++|+++.+|+ +++|.||||+|||||+|+|+ |...|....+ .++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------~~~~~~~~---- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------SLPVFENI---- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------cCcCccEE----
Confidence 4567899999995 89999999999999999998 4444421110 12333332
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD 416 (568)
+..++.. +..++..+++|+||||++.+++++ .+|+++++|||++|+|
T Consensus 76 ------------------------------~~~lg~~--~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 76 ------------------------------FADIGDE--QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred ------------------------------EEecCch--hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 1112222 234566789999999999999884 8999999999999999
Q ss_pred HHHHHHHHH-HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 417 PASRNNLWN-VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 417 ~~~r~~i~~-~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+..++.++. ++++++ .|.++|++||+ .+...+|||+..|.+|++...+
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEEEec
Confidence 999999975 566654 58999999998 5677899999999999998763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=209.28 Aligned_cols=202 Identities=24% Similarity=0.317 Sum_probs=158.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.+.+-++||++.|++ .++.+++++|.|.-...++|+||||.|||||+++|.|-+.|+.|+.+-+ -
T Consensus 584 PPvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------h 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------H 648 (807)
T ss_pred CCeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------c
Confidence 356889999999975 4789999999999999999999999999999999999999999986422 2
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc-ccCCCCChhHHHHHHHHHHH
Q 008362 323 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 323 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~~~LSgG~kqrl~la~Al 399 (568)
|-+||+.-|+. .|-..-|..|.|. +...++. +.+.+.|-.+||.. +++ -++..||||||-||++|---
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLq---r~FNlpy----q~ARK~LG~fGL~s--HAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQ---RKFNLPY----QEARKQLGTFGLAS--HAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHH---HhcCCCh----HHHHHHhhhhhhhh--ccceEeeeecCCcchHHHHHHHHh
Confidence 44699988875 3444556666554 3344443 34667788899963 444 47899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKEL 470 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l 470 (568)
++.|+||||||||++||..+...+-+.|++++. .||++|||-..+.+..-.+.++.+-.|- -.|..++-
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 999999999999999999999999999988754 5899999976665554455565554332 23444443
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=198.55 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=73.2
Q ss_pred cccccCCCCChhHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-C-ceEEEEcCCHHHHHHh
Q 008362 377 VADKQAGKYSGGMKRRLSVAIS----LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-G-RAIILTTHSMEEAEAL 449 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~A----l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g-~tiil~tH~~~e~~~l 449 (568)
+.+..+.+||||||||+.+|++ ++.+|+++++||||+|||+..++.+++.+.+. ++ | .|+|++||++.+....
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 4577889999999999887754 45899999999999999999999999999885 44 5 5899999999888888
Q ss_pred CC--EEEEEECCE
Q 008362 450 CD--RLGIFVDGS 460 (568)
Q Consensus 450 ~d--ri~il~~G~ 460 (568)
|| ++++|++|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 87 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-22 Score=206.28 Aligned_cols=171 Identities=25% Similarity=0.388 Sum_probs=131.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-------------CCCcHHHhh-c--ceEEEcCCC----
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-------------IRTDMDRIY-T--SMGVCPQED---- 333 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-------------i~~~~~~~r-~--~ig~~~Q~~---- 333 (568)
..+|+++||+||||-||||.+|+|+|.+.|.=|+- ++.+ +.+-..++. . ++..=||.-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 46899999999999999999999999999987763 2211 000000111 0 122233321
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 008362 334 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413 (568)
Q Consensus 334 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts 413 (568)
..+.. ||.|-|.- .+.+...+++.++++|. +..++.+++||||+.||++||.|++.+++++++|||||
T Consensus 175 k~~KG-~v~elLk~---------~de~g~~devve~l~L~--nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 175 KVVKG-KVGELLKK---------VDERGKFDEVVERLGLE--NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred HHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcch--hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 11222 44444431 11123567889999997 48999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 414 GLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 414 gLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
-||...|-...++|+++. .+++||++.||+.-.+.++|-|.|+..
T Consensus 243 yLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 243 YLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred cccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999975 489999999999999999999999863
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=204.66 Aligned_cols=201 Identities=21% Similarity=0.254 Sum_probs=157.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
+.+|++++|+..-++. +..+++|+||+|++|+-+-|.||||||||+|+|+++|+-+-++|++.-....-
T Consensus 431 Dn~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~------- 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG------- 499 (659)
T ss_pred cceEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------
Confidence 4689999999988752 35789999999999999999999999999999999999999999997554221
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCC----CCcccc-----cCCCCChhHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFH----GGVADK-----QAGKYSGGMKRR 392 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~-----~~~~LSgG~kqr 392 (568)
-+.+-|+||.|..-.. |.||.+.++.. .....+...++++.+.|+.++|.| .+-.|. =...||+|||||
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 1457899999987666 99999988622 111112223456777777777753 001121 123699999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++.||-+.++|++-||||-||++|......+.+.+++ .|.|.|-++|.-..- ..=|.+.-|+.
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHH-hhhhEEEEecC
Confidence 9999999999999999999999999999999888765 489999999997654 45677766653
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-22 Score=194.66 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=119.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceE-EEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig-~~~Q~~~l~~~lTv~ 342 (568)
+.+.+|++++.++|++++|.||||+||||++++++= ..+..++| ++|.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe-----
Confidence 468999999999999999999999999999999981 12334556 6666543222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--cCCCCEEEEeCC---CCCCCH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 417 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al--~~~p~lllLDEP---tsgLD~ 417 (568)
.++++++.+++. +...+.+|.||++++.+++++ +.+|+++||||| |+++|+
T Consensus 72 -------------------~~~~il~~~~l~-----d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~ 127 (222)
T cd03285 72 -------------------IVDCILARVGAS-----DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDG 127 (222)
T ss_pred -------------------ccceeEeeeccc-----cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHH
Confidence 123455666764 233678999999999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 418 ASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 418 ~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
.++.. .+++.+ +.|.++|++||+ .++..+||++..+++|++...++
T Consensus 128 ~~~~~--~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 128 FGLAW--AIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHH--HHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 98853 333433 348899999996 78888999999999999988765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=197.18 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccCCCCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 380 KQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
+...+|||||+||+++|++++. +|+++++||||+|||+..++.+.+.+++..++.|+|++||+++.+ .+||++++
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~ 244 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFL 244 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEE
Confidence 3444599999999999987654 999999999999999999999999999877789999999999865 68999999
Q ss_pred EECCE
Q 008362 456 FVDGS 460 (568)
Q Consensus 456 l~~G~ 460 (568)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=188.18 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=109.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+.+|++++. |++++|+||||||||||+|+|+|... +...|.++... .+.+|.+.+|+.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~--------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS--------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC--------ccCcccceEEEeccchh
Confidence 45788887776 79999999999999999999988543 22355554221 36677788999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
++.+.... ...+ .+++.++++.+++ .+|+++++|||++|+|+..+..+
T Consensus 79 ~l~~~~s~---~~~e-~~~~~~iL~~~~~----------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 79 DLRDGISY---FYAE-LRRLKEIVEKAKK----------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred ccccccCh---HHHH-HHHHHHHHHhccC----------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 99774321 1222 2456677765531 79999999999999999999876
Q ss_pred H-HHHHHh-cCCceEEEEcCCHHHHHHh--CCEEEEE
Q 008362 424 W-NVVKRA-KQGRAIILTTHSMEEAEAL--CDRLGIF 456 (568)
Q Consensus 424 ~-~~l~~~-~~g~tiil~tH~~~e~~~l--~dri~il 456 (568)
. .+++++ ++|.++|++||+++++..+ .+++..+
T Consensus 127 ~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 4 567765 4589999999999999876 4555443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=190.96 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=158.9
Q ss_pred CeEEEEeEEEEcCCC--------------------CCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---
Q 008362 244 HAIISDNLRKIYPGR--------------------DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--- 300 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~--------------------~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--- 300 (568)
..+.++|++|.|.+. .......+++|+||++++|++++++|++||||||+++||.|.
T Consensus 356 ~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~ 435 (593)
T COG2401 356 GPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG 435 (593)
T ss_pred CccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhc
Confidence 457888888887531 001245689999999999999999999999999999999994
Q ss_pred -----CCCCceEEEECCeeCCCcHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC
Q 008362 301 -----TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 374 (568)
Q Consensus 301 -----~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~ 374 (568)
++|++|.|.+--..+ -..+|-.. .-|..-|+.||+.- . ++ + .....++|+..|+.+
T Consensus 436 ~~ee~y~p~sg~v~vp~nt~----------~a~iPge~Ep~f~~~tilehl~s---~---tG-D-~~~AveILnraGlsD 497 (593)
T COG2401 436 RGEEKYRPDSGKVEVPKNTV----------SALIPGEYEPEFGEVTILEHLRS---K---TG-D-LNAAVEILNRAGLSD 497 (593)
T ss_pred ccccccCCCCCceeccccch----------hhccCcccccccCchhHHHHHhh---c---cC-c-hhHHHHHHHhhccch
Confidence 679999987643221 12445432 22346688888752 1 11 1 234567899999987
Q ss_pred CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHh-CC
Q 008362 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEAL-CD 451 (568)
Q Consensus 375 ~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l-~d 451 (568)
.-...++.++||.|||.|+.||.++..+|.+++.||-.|.||+.+...+..-|.++. .|.|++++||+.|...+| -|
T Consensus 498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 555677889999999999999999999999999999999999999999999999863 499999999999999999 78
Q ss_pred EEEEEECCEE
Q 008362 452 RLGIFVDGSL 461 (568)
Q Consensus 452 ri~il~~G~l 461 (568)
+++...-|+.
T Consensus 578 ~li~vgYg~v 587 (593)
T COG2401 578 TLILVGYGKV 587 (593)
T ss_pred eeEEeecccc
Confidence 8888776654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=176.39 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 385 YSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 385 LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
||||||||+++|++++ .+|+++++|||++|||+..++.+.+.+++. ++|+++|++||+++.+. .|||++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 799999999999999999999999999886 45799999999998775 7999998875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-20 Score=172.82 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=102.8
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEE-EcCCCCCCCCCCHHHHHH
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHLL 346 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~-~~Q~~~l~~~lTv~e~l~ 346 (568)
...+..+.++.+..|+|||||||||+++.+....-..+|.+... .+. +.|+ +|+...-+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~---------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL---------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE----------
Confidence 44455666667999999999999999999887665555544331 110 1111 22221111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHH
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~ 422 (568)
+. ...+||+||+||+++|++|.. +|+++++|||++|+|+..++.
T Consensus 72 -------------------------i~-------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 -------------------------IF-------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred -------------------------eh-------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 10 001299999999999999986 789999999999999999999
Q ss_pred HHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 423 LWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 423 i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
+.+.+.+. +++.++|++||+.+.++ .+||++.|..
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 99999875 45899999999999987 5899999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-20 Score=181.52 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=105.0
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
-.++++.+|++++|.|||||||||++++|++.. .+..|... . .-+..++++.|. +.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~---------~~~~~i~~~dqi---~~---------- 77 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-P---------AESASIPLVDRI---FT---------- 77 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-c---------ccccccCCcCEE---EE----------
Confidence 345555689999999999999999999999543 22222110 0 001123332221 11
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH-HH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NV 426 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~-~~ 426 (568)
.++.. +......+.+|+++|| ++.+.+++.+|+++|+||||+|+||..+..+. .+
T Consensus 78 ---------------------~~~~~--d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 78 ---------------------RIGAE--DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred ---------------------EecCc--ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 11111 1223445567777765 77778889999999999999999999988775 45
Q ss_pred HHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 427 VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 427 l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
++.+ +.+.++|++||+++.++ .|+++..+.+|++...++..+
T Consensus 134 l~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 134 LEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 6655 45899999999987776 688999999999998886633
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-19 Score=178.13 Aligned_cols=190 Identities=21% Similarity=0.315 Sum_probs=121.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----------------c-----------------------e
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----------------S-----------------------G 306 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~----------------~-----------------------G 306 (568)
.+++.++++.+| +.+|+|||||||||++.+|.-+.... . |
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~ 89 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGG 89 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCC
Confidence 456777888776 78999999999999998876443211 0 0
Q ss_pred --EEEECCeeCCCcHHHh---hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh---HHHHHHHHHHHc-----CCC
Q 008362 307 --TAYVQGLDIRTDMDRI---YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA---LTQAVEESLKSV-----NLF 373 (568)
Q Consensus 307 --~i~i~G~~i~~~~~~~---r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~---~~~~~~~~l~~~-----~L~ 373 (568)
.+++||..+.. ..++ ...+.+.|++..|.. .+..++..|.-.+-+...++ ..++.+++++.. |-.
T Consensus 90 ~~~~~ing~~~~~-l~~l~~~l~~i~~~~~~~~l~~-~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 90 GRKARLNGIKVRR-LSDLLGVLNAVWFAPEDLELVK-GSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred ceEEEECCeeccC-HHHHhCcCcEEEEecchhhhhc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22233333321 1222 223555666555553 25556666543332211111 111222222211 111
Q ss_pred CCCc-----ccccCCCCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 008362 374 HGGV-----ADKQAGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 439 (568)
Q Consensus 374 ~~~~-----~~~~~~~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~ 439 (568)
.++. .......+|+||||++++|++|+ ++|+++++||||++||+..++.+++.+++.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 0000 12235568999999999999985 8999999999999999999999999997653 57788
Q ss_pred cCCHHHHHHhC---CEEEEEECCEE
Q 008362 440 THSMEEAEALC---DRLGIFVDGSL 461 (568)
Q Consensus 440 tH~~~e~~~l~---dri~il~~G~l 461 (568)
+|+.+++..+| ++++.+++|++
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 88888888888 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=175.66 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=109.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+.+|+++++++|++++|.||||+||||++++++|+. ++.++|. |- +.....+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~-~v-pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGC-FV-PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCC-Cc-chhhcCccChh
Confidence 56999999999999999999999999999999999873 2334442 11 34445556666
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
++. ..++.. +..++..+++|+||+|+ +.+.+++.+|++++||||++|+||..+..+
T Consensus 74 ~I~---------------------~~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 74 RLL---------------------SRLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred hee---------------------EecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 652 223332 24567788999999975 566778999999999999999999876665
Q ss_pred -HHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 424 -WNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 424 -~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
+.+++.+ +.|.++|++||+.+.++.+++
T Consensus 130 ~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 130 SLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 4556665 469999999999999988774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=205.31 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHhhhcCCCch----------hHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHcCCC--
Q 008362 337 ETLTGREHLLFYGRLKNLKGP----------ALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP-- 403 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~----------~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~la~Al~~~p-- 403 (568)
-.+||.|.+.|...+ +.+.+ ++.++++ .|+.+||.+ . .++++.+|||||||||.||+||..+|
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~--l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDY--LTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCC--CCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 358899998886554 22221 3344554 688899963 4 69999999999999999999999997
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+++||||||+||||..++.++++|++++ +|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 511 ~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 511 VLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred cEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999975 5999999999999987 59999999 9999999999999854
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=189.48 Aligned_cols=179 Identities=23% Similarity=0.362 Sum_probs=138.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|.++|+-..-+. ...++..+||+|++|--.-|.||||||||+|+|+|.|+-|...|...+-- +.
T Consensus 481 gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~----------~~ 545 (728)
T KOG0064|consen 481 GIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR----------PN 545 (728)
T ss_pred ceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC----------Cc
Confidence 4888888887764 35689999999999999999999999999999999999988777654321 24
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-----hcCCCchhHHHHHHHHHHHcCCCCCCcccccC---------CCCChhHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLKSVNLFHGGVADKQA---------GKYSGGMK 390 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---------~~LSgG~k 390 (568)
+|-|+||.|..- .=|.+|.+.++-. -+|.+. +..+.+|+.+.|++ ...+.. ..||||+|
T Consensus 546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~--i~qr~~g~da~~dWkd~LsgGek 618 (728)
T KOG0064|consen 546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEH--ILQREGGWDAVRDWKDVLSGGEK 618 (728)
T ss_pred ceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHH--HHHhccChhhhccHHhhccchHH
Confidence 599999998654 3366666655321 234443 34556666666642 222222 25999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
||+.+||.+-++|+..+|||.||++.+.....+.+..++ -|.+.|-+||......
T Consensus 619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk 673 (728)
T KOG0064|consen 619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHH
Confidence 999999999999999999999999999999999887654 4899999999986543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=205.38 Aligned_cols=199 Identities=19% Similarity=0.232 Sum_probs=150.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh----------CCCCCCceEEEECCeeCCC----c-------HHHhhc
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------GITRTTSGTAYVQGLDIRT----D-------MDRIYT 324 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------Gl~~p~~G~i~i~G~~i~~----~-------~~~~r~ 324 (568)
=|+|++.+|+-|..+++-|.+|||||||++-.. |.. .-+--|.|+-.+|.. . .+.+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997433 322 223347777665521 1 112221
Q ss_pred c----------------------eEEEcC---------CCCCC--------------------------------CCCCH
Q 008362 325 S----------------------MGVCPQ---------EDLLW--------------------------------ETLTG 341 (568)
Q Consensus 325 ~----------------------ig~~~Q---------~~~l~--------------------------------~~lTv 341 (568)
- =|-||. +-.+. -+|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0 111221 00111 14788
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPA 418 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~---p~lllLDEPtsgLD~~ 418 (568)
.|-+.|+... +.+ .+.-+.|..+||.. -...++..+|||||.||+-||.-|..+ +.+++|||||+||++.
T Consensus 1664 ~ea~~~F~~~-----~~i-~~~L~~L~~vGLgY-l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~ 1736 (1809)
T PRK00635 1664 EEVAETFPFL-----KKI-QKPLQALIDNGLGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQ 1736 (1809)
T ss_pred HHHHHHhhcc-----HHH-HHHHHHHHHcCCCe-eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHH
Confidence 8888877432 222 34456788999973 356899999999999999999999865 7899999999999999
Q ss_pred HHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 419 SRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 419 ~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
..+.+.++++++ ..|.|||++.||++.+.. ||.|+=| ..|++++.|+|+++.+.
T Consensus 1737 d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1737 QKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 999999999997 579999999999999987 9999988 45799999999999763
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=201.34 Aligned_cols=132 Identities=27% Similarity=0.364 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHhhhcCCCc---------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CEE
Q 008362 338 TLTGREHLLFYGRLKNLKG---------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVV 406 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~---------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~ll 406 (568)
.||+.|.+.|...+.-... +++.+++ +.+..+||.. -..++++.+|||||+||+.||+||+.+| +++
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~-l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDY-LTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 6899999888876531110 1222233 2467788852 1268999999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
||||||+||||..++.++++|++++ +|.|||+++|+++++. .|||+++| ++|+++..|+++++..
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999974 6999999999999987 89999999 8999999999999853
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-20 Score=189.01 Aligned_cols=215 Identities=20% Similarity=0.315 Sum_probs=161.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCC-cH--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRT-DM-- 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~-~~-- 319 (568)
-|.++|.+.+-.+ +..+.|-||.|-.|..+||+||||-|||||++-|+. +--|..=++.++.+.+.. ..
T Consensus 264 DIKiEnF~ISA~G------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 4788888777653 568999999999999999999999999999999986 333445566666666521 10
Q ss_pred -H----HhhcceEEEcCCC-----CCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 320 -D----RIYTSMGVCPQED-----LLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 320 -~----~~r~~ig~~~Q~~-----~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
+ .-.++..++-... .--.+.|+.|-+.- +..++.+.....+.++.++|.-+|.+. +..+++...+|||
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk-EMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK-EMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh-hHhcCCccccCCc
Confidence 0 0011122211111 11134677777754 445655444455667889999999985 6789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEee-cCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~-g~~ 467 (568)
.|-|+++||||..+|-+|.|||||+.||-.+.-.+-+.|+.. .+|.+++|||-...+..|..|+-+++-++... |+.
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999998877776666544 37999999999999999999999999888653 444
Q ss_pred H
Q 008362 468 K 468 (568)
Q Consensus 468 ~ 468 (568)
.
T Consensus 495 ~ 495 (807)
T KOG0066|consen 495 T 495 (807)
T ss_pred H
Confidence 3
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=183.50 Aligned_cols=128 Identities=24% Similarity=0.362 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---CEEEEeCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTG 414 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~lllLDEPtsg 414 (568)
+|||.|-..|+.... .+. +.-+.|..+||.- -...+++.+|||||.||+-||.-|.... -+.||||||+|
T Consensus 783 ~MTveEA~~FF~~~p-----~I~-rkLqtL~dVGLgY-i~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 783 DMTVEEALEFFEAIP-----KIA-RKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred hccHHHHHHHHhcch-----HHH-HHHHHHHHcCcce-EecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 578888888886542 233 3345677899963 3468999999999999999999999887 89999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 415 LDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 415 LD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
|-..-.+++.+.|.++ .+|.|||++.|+|+.+.. ||.|+=| ..|++++.|+|+++.+.
T Consensus 856 LH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 9999999999999996 579999999999998864 9999877 56899999999999863
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=168.74 Aligned_cols=141 Identities=19% Similarity=0.222 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~ 355 (568)
.-++++||||||||||+++|+|+++|++|++.++|+++.. ...++.+.++++||++ +.+.++|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence 5789999999999999999999999999999999999853 3445666788899965 4455666554210
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCce
Q 008362 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 435 (568)
Q Consensus 356 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~t 435 (568)
.+ |+ ..+++| .+|+++++|||++ ++.+..+++..++|.+
T Consensus 183 -------~~-----------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~ 221 (270)
T TIGR02858 183 -------AE-----------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVS 221 (270)
T ss_pred -------HH-----------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCE
Confidence 00 11 223333 5999999999974 3445555555567999
Q ss_pred EEEEcCCHHH--H-----------HHhCCEEEEEECCEEEeecCHHHH
Q 008362 436 IILTTHSMEE--A-----------EALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 436 iil~tH~~~e--~-----------~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+|+|||+.+. + ..++||+++|++|+ ..|+++++
T Consensus 222 vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 222 IIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 9999997655 4 35689999999887 66776554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=165.34 Aligned_cols=176 Identities=30% Similarity=0.395 Sum_probs=140.1
Q ss_pred cceeeeeEEEEeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 008362 264 KVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~G-----ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~ 338 (568)
+.-+-+..|.|..| |+...+|.||.||||+++|++|.++|++|. ++. .-+++|=||.-.--..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccccCcccc
Confidence 45677888888887 578999999999999999999999998863 111 1247888887544334
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
-||++.+.- .++.. -...+-+.+.++-+.++ +..|+.+.+||||++||+++|.+|=..+++.+.|||++-||.+
T Consensus 417 ~tvR~ll~~--kIr~a--y~~pqF~~dvmkpL~ie--~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSe 490 (592)
T KOG0063|consen 417 GTVRQLLHT--KIRDA--YMHPQFVNDVMKPLQIE--NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSE 490 (592)
T ss_pred chHHHHHHH--HhHhh--hcCHHHHHhhhhhhhHH--HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChH
Confidence 588876543 22211 11134456667777775 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 419 SRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 419 ~r~~i~~~l~~--~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
.|...-..+++ +..++|-.++.||.-.+.-++||+++..
T Consensus 491 QRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 491 QRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 99999999988 3678999999999999999999998764
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=162.12 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=105.8
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+.+|++++..+ ++++|.||||+||||++|++++..-. |+ .|..+. ..+.+++++.| +++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----cccceecceee---EeccCCchh
Confidence 4589999999987 99999999999999999999875422 11 122221 11245677654 566777777
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh--hHHHHHHHHHHHcCCCCEEEEeCC---CCCCCHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG--GMKRRLSVAISLIGNPKVVYMDEP---STGLDPA 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg--G~kqrl~la~Al~~~p~lllLDEP---tsgLD~~ 418 (568)
++.... |. .+.++++-+.+.+.+|++++|||| |+++|+.
T Consensus 85 ~ls~g~------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~ 128 (216)
T cd03284 85 DLAGGR------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGL 128 (216)
T ss_pred hhccCc------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Confidence 665320 11 112233333334679999999999 8888876
Q ss_pred HHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 419 SRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 419 ~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+. .+.+++.+ +. +.++|++||+. +...++|++..+.+|++...++.+++
T Consensus 129 ~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 129 SI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 53 33344443 33 78999999997 55668999888899999887776554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-15 Score=155.67 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=69.3
Q ss_pred CCCCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhC--
Q 008362 382 AGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC-- 450 (568)
Q Consensus 382 ~~~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~-- 450 (568)
...+|.||||++++|++|+ ++|++++||||+++||+..++.+++.+.+. +..+++|||+++.+..++
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 3579999999999999985 899999999999999999999999988753 458999999998887775
Q ss_pred CEEEEEECCEE
Q 008362 451 DRLGIFVDGSL 461 (568)
Q Consensus 451 dri~il~~G~l 461 (568)
+++..|++|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 57999999987
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-16 Score=153.65 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=66.2
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCceEEEEcCCHH
Q 008362 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSME 444 (568)
Q Consensus 368 ~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i-~~~l~~~-~-~g~tiil~tH~~~ 444 (568)
..++.. +..++..+++|+|++|...+.+ .+.+|+++++|||++|+||..+..+ +.+++.. + .+.++|++||+++
T Consensus 47 ~~~~~~--d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 47 TRIGAS--DSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEeCCC--CchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 344443 3567788899999987444443 3469999999999999999988776 4556654 3 3889999999995
Q ss_pred HHHHhCCEEEEEECCEEEe
Q 008362 445 EAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 445 e~~~l~dri~il~~G~l~~ 463 (568)
+..+||+---+.++++..
T Consensus 124 -l~~~~~~~~~v~~~~~~~ 141 (185)
T smart00534 124 -LTKLADEHPGVRNLHMSA 141 (185)
T ss_pred -HHHHhhcCccceEEEEEE
Confidence 667888644445555443
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=150.57 Aligned_cols=176 Identities=20% Similarity=0.306 Sum_probs=119.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---------cHHHhhcceEEEcCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---------DMDRIYTSMGVCPQEDL 334 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---------~~~~~r~~ig~~~Q~~~ 334 (568)
..+++++ +.+.+||+++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.. ....+++.++++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5699999 9999999999999999999999999999999999999996654321 22335678999987643
Q ss_pred CCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHH-HHHHHHHHHcCCCCEEEEeCC
Q 008362 335 LWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMK-RRLSVAISLIGNPKVVYMDEP 411 (568)
Q Consensus 335 l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~k-qrl~la~Al~~~p~lllLDEP 411 (568)
++.+...- +.. -.+.+.+..-|-. . =--..+++- -|- |-++++ +++|+ .
T Consensus 225 -----~~~~r~~~~~~a----------~~iAEyfr~~g~~---V-ll~~Dsltr~A~A~rEisl~---~ge~P------~ 276 (438)
T PRK07721 225 -----PALMRIKGAYTA----------TAIAEYFRDQGLN---V-MLMMDSVTRVAMAQREIGLA---VGEPP------T 276 (438)
T ss_pred -----CHHHHHHHHHHH----------HHHHHHHHHCCCc---E-EEEEeChHHHHHHHHHHHHh---cCCCC------c
Confidence 22222221 110 1122222222311 0 000111110 000 111111 22322 3
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 412 STGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~~---~g~-----tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|+|+||.....++++++++. +|. ||++.+|||++ .+||++..|.+|+++..++..+-
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence 78999999999999999864 475 99999999995 78999999999999999988663
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=139.79 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=92.6
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC-CCCCH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTG 341 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~-~~lTv 341 (568)
.+=+|++++=..+.+++|.||||+||||++|.+.. .+ +..|...... ...++|..|...-+ +..++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeeeeeeeCCccCh
Confidence 35566665422237999999999999999999984 33 5566544321 13467777753211 11122
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
.+++ + ++ .-+-||+++|++++.+|+++++|||++|+|+....
T Consensus 86 ~~~~---------------------------S----------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 86 SSGQ---------------------------S----------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred hhcc---------------------------c----------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 1111 0 00 23458999999999999999999999999997654
Q ss_pred H-HHHHHHHh-cC---CceEEEEcCCHHHHHHhC
Q 008362 422 N-LWNVVKRA-KQ---GRAIILTTHSMEEAEALC 450 (568)
Q Consensus 422 ~-i~~~l~~~-~~---g~tiil~tH~~~e~~~l~ 450 (568)
. ++.+++++ ++ +.++|++||+.+.++.+.
T Consensus 128 ~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 128 GLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 4 46677775 33 358999999999988753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-15 Score=167.78 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=94.5
Q ss_pred eEEEEeCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCceEEEECCeeCCCcHHHhhcceEEEcCCCC-CCCCCCHHHHHH
Q 008362 270 LSLALPSG-ECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHLL 346 (568)
Q Consensus 270 isl~i~~G-ei~~LlG~NGaGKTTll~~l~Gl-~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~-l~~~lTv~e~l~ 346 (568)
+|+++.++ ++++|.||||+||||++|+++|. +.+..| .++|.+.. .++ ..+++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------CCccCCcccccc---chhhee
Confidence 78888877 99999999999999999999986 333333 14444321 111 111110
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH-HH
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WN 425 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i-~~ 425 (568)
..+ +.. +......+++|+||+|+..+++++ .+|+++|+|||++|+||.....+ +.
T Consensus 371 --~~i-------------------~~~--~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~a 426 (771)
T TIGR01069 371 --ADI-------------------GDE--QSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAIS 426 (771)
T ss_pred --eec-------------------ChH--hHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHH
Confidence 111 000 112345678999999999998886 79999999999999999999999 56
Q ss_pred HHHHh-cCCceEEEEcCCHHHHH
Q 008362 426 VVKRA-KQGRAIILTTHSMEEAE 447 (568)
Q Consensus 426 ~l~~~-~~g~tiil~tH~~~e~~ 447 (568)
++..+ +.|.++|++||+.+...
T Consensus 427 iLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 427 ILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHhcCCEEEEECChHHHHH
Confidence 67665 46899999999987654
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-14 Score=142.92 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=100.3
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC--CCCceEEEECCeeCCC---cHHHhhcceEEEcCCCCCC-----
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT--RTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQEDLLW----- 336 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~--~p~~G~i~i~G~~i~~---~~~~~r~~ig~~~Q~~~l~----- 336 (568)
++..+.+.+ .++.|+||||+||||++.+|. .+- +..+....-...-+.. ........+...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 566777765 599999999999999999993 222 1211111000000000 0011122344444332211
Q ss_pred CCCCHHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----cCCCCEEEE
Q 008362 337 ETLTGREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYM 408 (568)
Q Consensus 337 ~~lTv~e~l~~~----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al----~~~p~lllL 408 (568)
+...+...+.-- ..+.+ .....+.+.+.++..++.. ..||||||.+++||.-| ...+++++|
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~--~~~~~~~~~~~l~~~~i~~--------~~lSgGEk~~~~Lal~lA~~~~~~~p~~il 164 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKING--KKVRLKDLEELLPEVGISP--------EFLSGGEKSLVALALLLALQRYKPSPFLIL 164 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETT--EEE-HHHHHHHHHCTTTTT--------TGS-HHHHHHHHHHHHHHHHTCS--SEEEE
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccc--------cccccccccccccccccccccccccccccc
Confidence 000000000000 00111 1122355667777777642 19999999999998654 467899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 409 DEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 409 DEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
|||.++||+..++.++++|++..++.-+|++||+-+..+ .||+.+.+
T Consensus 165 DEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 165 DEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp ESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999999999999999877788999999976655 58887654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=141.93 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHH-HHHhCCCCC-----------------CceEEEECCeeCCCcHHHhhcceEEEcCCCCC--CCC
Q 008362 279 CFGMLGPNGAGKTTFI-SMMIGITRT-----------------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL--WET 338 (568)
Q Consensus 279 i~~LlG~NGaGKTTll-~~l~Gl~~p-----------------~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l--~~~ 338 (568)
-++++|+||||||||+ +.++|..++ +.|.+.+++.|.......-....+|..+.+.. .-+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 4789999999999999 689998764 46888888888743211100112233333211 111
Q ss_pred CC---HHHHHHHH-hh-----------hcC--CC--chhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHH
Q 008362 339 LT---GREHLLFY-GR-----------LKN--LK--GPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAI 397 (568)
Q Consensus 339 lT---v~e~l~~~-~~-----------l~~--~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG--~kqrl~la~ 397 (568)
+| ..+++..+ .. +-+ .. ..+......+..+..++. +. ..+..||+ +++++.||+
T Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~--e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 91 VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YY--DISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EE--EEeCCCCCCHHHHHHHHHH
Confidence 12 11111110 00 001 00 111111122333333331 22 33444554 889999999
Q ss_pred HHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 008362 398 SLIGNPKVVYMDEPS-----TGLDPASRNNLWNVVKRAK 431 (568)
Q Consensus 398 Al~~~p~lllLDEPt-----sgLD~~~r~~i~~~l~~~~ 431 (568)
+++.+|+++++|||| +||||..++.+.+.+++++
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999998864
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-14 Score=146.34 Aligned_cols=180 Identities=21% Similarity=0.274 Sum_probs=126.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc--ceEEEcC---CCCCCCCCCHHHHHHHHh
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT--SMGVCPQ---EDLLWETLTGREHLLFYG 349 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~--~ig~~~Q---~~~l~~~lTv~e~l~~~~ 349 (568)
.+|++.|++|.||-||||-+++++|-.+|.-|.-- ++-+=.+.....|. --+| +| ++.+-.-....+-..++.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~y-ftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNY-FTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhh-hhhhccccccCcCChHHHHHHHH
Confidence 48999999999999999999999999999877521 11110000000000 0011 11 111111111111122222
Q ss_pred hhcCC-----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 008362 350 RLKNL-----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424 (568)
Q Consensus 350 ~l~~~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~ 424 (568)
..+|. .....++..+++++.++|. ...++.+.+||||+-||.++|++.+.+.++.++|||++-||...|..-.
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~--~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLN--NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHh--hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 22221 1122233556777788886 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 425 NVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 425 ~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
..|+.+ ..++=||++.||++..+.++|-+.++..
T Consensus 254 ~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999985 6799999999999999999999999863
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-14 Score=123.66 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=63.6
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH-HhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~-~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+|++++|++++||+++|+||||||||||++++. +|++.++|.|+..... ..++.++++||+ +++. |++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHH
Confidence 46999999999999999999999999999999986 8999999999865333 345567788877 5553 999
Q ss_pred HHHHH
Q 008362 343 EHLLF 347 (568)
Q Consensus 343 e~l~~ 347 (568)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=127.82 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=91.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+.+|+++++.+|++++|.||||+||||++++++| .+.+..|..... +. -.+++..| ++-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~---------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS---------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc---------eEEeccce---EEEEecCc
Confidence 458999999999999999999999999999999999 677888875432 21 12333222 11111112
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
|.+.- +. ++++ .+-++++-+..-+.+|+++|+|||.+|.|+.....
T Consensus 85 d~~~~-----~~----------------------------StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 85 DSIQH-----GM----------------------------STFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ccccc-----cc----------------------------chHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 22210 00 0011 11122222223356899999999999999887777
Q ss_pred H-HHHHHHh-cC-CceEEEEcCCHHHHHH
Q 008362 423 L-WNVVKRA-KQ-GRAIILTTHSMEEAEA 448 (568)
Q Consensus 423 i-~~~l~~~-~~-g~tiil~tH~~~e~~~ 448 (568)
+ +.+++.+ +. +.++|++||+.+.++.
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 4 6667664 33 8899999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-13 Score=148.33 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=71.4
Q ss_pred CCCChhHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 383 GKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 383 ~~LSgG~kqrl~la~Al~~~----p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
..|||||+||+++|++++.. |+++|+||||+|||+..+..+.+.|+++.++++||++||+++.+. .|||+++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 36899999999999999985 699999999999999999999999999877999999999999885 7999999998
Q ss_pred CE
Q 008362 459 GS 460 (568)
Q Consensus 459 G~ 460 (568)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-13 Score=151.37 Aligned_cols=148 Identities=21% Similarity=0.301 Sum_probs=103.7
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceE-EEcCCCCCCCCCCHHHHHH
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig-~~~Q~~~l~~~lTv~e~l~ 346 (568)
+|+++. ..+.++.|.|||++||||++|.++... +..++| +||-... ..+.+.+++.
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~i~ 375 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKEIF 375 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccceEE
Confidence 444443 345789999999999999999995321 112233 4454321 0122222221
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN- 425 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~- 425 (568)
. .+|-. +...+..+++|+||+|++.+++++ .+|+++|+|||++|+||..+..+..
T Consensus 376 --~-------------------~ig~~--~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~a 431 (782)
T PRK00409 376 --A-------------------DIGDE--QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAIS 431 (782)
T ss_pred --E-------------------ecCCc--cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHH
Confidence 1 12222 235567789999999999999998 8999999999999999999998865
Q ss_pred HHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 426 VVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 426 ~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++..+ ..|.++|++||+.+.+...+++..++ ++.+..
T Consensus 432 ile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 432 ILEYLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 55555 46899999999999988888877665 455544
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=139.22 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=126.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+.++.+.+++.|.. ...++|++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 129 ~~~~r~~i~~~l~T-----GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFET-----GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCC-----CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35777888888863 25689985 99999999999999999999999999999999988776555321
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 400 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--- 400 (568)
.++.|.+...... -++.. ...=....+.|.|+|+|+..+.+.+
T Consensus 195 ---------------~ev~e~~~~~l~~------------------~gl~~-tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 ---------------REVKDFIRKELGE------------------EGMRK-SVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ---------------ccHHHHHHHHhhh------------------cccce-eEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3566654421111 11211 1122455778999999999999988
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 401 ----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 401 ----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+++-++++|+||...|+. +++...+.+.. .|.+..+.||.. ++++|.....+|.+.+.++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch----hHHHHhccCCCcceEEEEE
Confidence 999999999999999996 88888777653 588999989853 4455555567788766554
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-13 Score=157.95 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=77.3
Q ss_pred cccccCCCCChhHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIG----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE 445 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~----------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e 445 (568)
..++++++|||||++|+++|+||+. +|+++|+||||+|||+.++..+++.|.++. .|++|++|||++++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 5678899999999999999999984 799999999999999999999999999864 68999999999999
Q ss_pred HHHhCCEEEEEECC
Q 008362 446 AEALCDRLGIFVDG 459 (568)
Q Consensus 446 ~~~l~dri~il~~G 459 (568)
.+.+||||.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 99999999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=147.15 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=72.0
Q ss_pred cccCCCCChhHHHHHHHHHHHc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 379 DKQAGKYSGGMKRRLSVAISLI----------GNPKVVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~----------~~p~lllLDEPt-sgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
+..+.+||||||||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ +|.+||++||+.+..+
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~ 541 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQ 541 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchh
Confidence 4467899999999999999987 699999999998 789999999999999988 7899999999977664
Q ss_pred HhCCEEEEEEC-CEE
Q 008362 448 ALCDRLGIFVD-GSL 461 (568)
Q Consensus 448 ~l~dri~il~~-G~l 461 (568)
.|||+++|.+ |+.
T Consensus 542 -~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 -KFDRHLKMEKVGRF 555 (562)
T ss_pred -hhhcEEEEEEECCe
Confidence 6999999986 543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=125.46 Aligned_cols=148 Identities=23% Similarity=0.292 Sum_probs=90.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF-ISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTl-l~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+.+++|.+.+++ .+++|+++.+.|+|||||||+ ++++.++.++....+++...
T Consensus 7 ~~~~~~ld~~l~g---------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e---------- 61 (230)
T PRK08533 7 ELSRDELHKRLGG---------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ---------- 61 (230)
T ss_pred EEEEeeeehhhCC---------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----------
Confidence 3667888888863 278999999999999999999 79999887654333333211
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 400 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--- 400 (568)
.|..+.+....++ |.. +++....=.+. ..+-. ..+|+++.++-.+.+.+-
T Consensus 62 ---------------~~~~~~~~~~~~~-g~~-------~~~~~~~~~l~---~~~~~-~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 62 ---------------LTTTEFIKQMMSL-GYD-------INKKLISGKLL---YIPVY-PLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred ---------------CCHHHHHHHHHHh-CCc-------hHHHhhcCcEE---EEEec-ccccChHHHHHHHHHHHHHHH
Confidence 2344444433222 211 11111110110 11111 235666554433333322
Q ss_pred -CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHh-cCCceEEEEcCCHHH
Q 008362 401 -GNPKVVYMDEPSTGL----DPASRNNLWNVVKRA-KQGRAIILTTHSMEE 445 (568)
Q Consensus 401 -~~p~lllLDEPtsgL----D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e 445 (568)
.+|+++++||||+++ |+..++.+++.++++ ++|.|++++ |++.+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 379999999999999 888899999999886 457766665 55543
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-13 Score=127.14 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=66.7
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDE--PtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
..+....+||+++.+..+++..+.+|+++++|| |+.++|+..++.+.+++ +.|+++|+++|+ ..+...+|||..
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~-~~~~~~~~~i~~ 147 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHR-RSVHPFVQEIKS 147 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECc-hhhHHHHHHHhc
Confidence 345666799999999999999999999999999 55566665554444444 468999999999 455678999999
Q ss_pred EECCEEEee
Q 008362 456 FVDGSLQCI 464 (568)
Q Consensus 456 l~~G~l~~~ 464 (568)
+.+|++...
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999998665
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=120.57 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=91.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+-+|++|+.++|++++|.||||+||||+++++++..-.. .|. .+... +..++ -.+.++..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~----~~~i~---~~~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAK----SMRLS---LVDRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCcc----ccEec---cccEEEEecCcc
Confidence 46899999999999999999999999999999999863321 121 11000 01111 122333333333
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
|++... . +++. .+-++++-....+.+|+++++|||.+|+||.....
T Consensus 84 d~~~~~-----~----------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 84 DDIMKG-----E----------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred cccccC-----c----------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 333210 0 0111 12233333333456899999999999999999988
Q ss_pred HHHH-HHHh-cC-CceEEEEcCCHHHHHHhC
Q 008362 423 LWNV-VKRA-KQ-GRAIILTTHSMEEAEALC 450 (568)
Q Consensus 423 i~~~-l~~~-~~-g~tiil~tH~~~e~~~l~ 450 (568)
+... ++.+ +. +.++|++||+++.+..++
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 8887 5554 33 899999999999998876
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-12 Score=141.31 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 384 KYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
.+||||+||++||++++. +|+++|+|||++|||+..+..+.+.++++.++.+||++||++..+ .+||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999996 689999999999999999999999999987789999999999877 689999999875
Q ss_pred E
Q 008362 460 S 460 (568)
Q Consensus 460 ~ 460 (568)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-12 Score=129.18 Aligned_cols=176 Identities=15% Similarity=0.192 Sum_probs=112.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--EEC--CeeCCCcHHHhhcce---EEEcCCCCCCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQ--GLDIRTDMDRIYTSM---GVCPQEDLLWET 338 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i--~i~--G~~i~~~~~~~r~~i---g~~~Q~~~l~~~ 338 (568)
|+|.+ +.+.+||..+|+||+|+|||||++.+.+......+++ .+. |.. ..+..++.+.+ -++-+.+.
T Consensus 6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~~---- 79 (249)
T cd01128 6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFDE---- 79 (249)
T ss_pred heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCCC----
Confidence 44443 5788999999999999999999999999887764333 322 211 11223333322 23333332
Q ss_pred CCHHHHHHHH-------h--hhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--------HHHHHHHH
Q 008362 339 LTGREHLLFY-------G--RLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--------KRRLSVAI 397 (568)
Q Consensus 339 lTv~e~l~~~-------~--~l~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~--------kqrl~la~ 397 (568)
+..+..... . +-.|.. -++. .+..+..+.+.+ .....+|||+ +||+++||
T Consensus 80 -~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~-------~~G~~~sgG~~~~~~~~~~q~~~~Ar 150 (249)
T cd01128 80 -PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVP-------PSGKILSGGVDANALHKPKRFFGAAR 150 (249)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhccc-------cCCCCCCCCcChhhhhhhHHHHHHhc
Confidence 222222111 0 111211 0111 122233333333 2334479999 99999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNN-LWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~-i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++..+++|.+| ||+.+|+.+... +. +...+ .+.|.|+.||.+.+.. ..|.|.+|+.|+.
T Consensus 151 ~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr 211 (249)
T cd01128 151 NIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTR 211 (249)
T ss_pred CCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCc
Confidence 99999999999 999999755544 43 44454 5899999999999876 5899999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-11 Score=114.96 Aligned_cols=82 Identities=16% Similarity=0.048 Sum_probs=70.0
Q ss_pred cccccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHh-cCCceEEEEcCCHHH-
Q 008362 377 VADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLD---PASRNNLWNVVKRA-KQGRAIILTTHSMEE- 445 (568)
Q Consensus 377 ~~~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD---~~~r~~i~~~l~~~-~~g~tiil~tH~~~e- 445 (568)
..+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.++++.+ +.|.|+|+++|+.+.
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~ 143 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 567888899999998 5666666778999999999999999 88888899988876 469999999998875
Q ss_pred --------HHHhCCEEEEEEC
Q 008362 446 --------AEALCDRLGIFVD 458 (568)
Q Consensus 446 --------~~~l~dri~il~~ 458 (568)
++.+||.++.|+.
T Consensus 144 ~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 144 GTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CcccCcCceeEeeeEEEEEEE
Confidence 6788999988873
|
A related protein is found in archaea. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=120.68 Aligned_cols=66 Identities=29% Similarity=0.394 Sum_probs=54.4
Q ss_pred cCCCCChhHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEcCCHHHH
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEA 446 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p---~lllLDEPtsgLD~~~r~~i~~~l~~~~~-g~tiil~tH~~~e~ 446 (568)
+...+|.|+||.+.++.++...+ .++++|||-++|+|..++.+.+.+++..+ +.-||+|||+...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45667999999999988888776 89999999999999999999999988655 88999999997643
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=143.86 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=74.8
Q ss_pred ccccCCCCChhHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIG--------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~--------~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
.++++.+|||||++|++||+||+. +|+++|+||||+|||+.+++.+++.|..+ +.|++|+++||..+.+++
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 458899999999999999999995 89999999999999999999999999987 469999999999999999
Q ss_pred hCCEEEEEEC
Q 008362 449 LCDRLGIFVD 458 (568)
Q Consensus 449 l~dri~il~~ 458 (568)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9888888765
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-11 Score=142.52 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=69.1
Q ss_pred cccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 379 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 379 ~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
++++..|||||+| |+++|++++++|+++|+||||+|||+..+..+.++|... ..+.+||++||+++. ...||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 4678899999999 555666888999999999999999999999999999885 457899999999875 56899
Q ss_pred EEEEEEC
Q 008362 452 RLGIFVD 458 (568)
Q Consensus 452 ri~il~~ 458 (568)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999983
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=130.41 Aligned_cols=150 Identities=20% Similarity=0.311 Sum_probs=106.0
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 344 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 344 (568)
.++++.+..+++|++++|+||||+||||++..|++.+.+..|. ++++++.++. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHH
Confidence 3567777788899999999999999999999999987666653 2478888876 35789999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH-HHHHHHHHcCCC-----CEEEEeCCCCCCCHH
Q 008362 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLIGNP-----KVVYMDEPSTGLDPA 418 (568)
Q Consensus 345 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq-rl~la~Al~~~p-----~lllLDEPtsgLD~~ 418 (568)
|.+++++.|++.....+..+...+..++.+ +....+.+...+++. .+.-..+++.++ .+++||.++.+
T Consensus 305 Lr~~AeilGVpv~~~~~~~Dl~~aL~~L~d--~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~---- 378 (484)
T PRK06995 305 LRIYGKILGVPVHAVKDAADLRLALSELRN--KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG---- 378 (484)
T ss_pred HHHHHHHhCCCeeccCCchhHHHHHHhccC--CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH----
Confidence 999999988765444444555556677753 556777875444432 234455555555 68999999887
Q ss_pred HHHHHHHHHHHhc-CCceEEEEcC
Q 008362 419 SRNNLWNVVKRAK-QGRAIILTTH 441 (568)
Q Consensus 419 ~r~~i~~~l~~~~-~g~tiil~tH 441 (568)
..+.+.++..+ .+.+=++.|+
T Consensus 379 --~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 --DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred --HHHHHHHHHhccCCCCEEEEeC
Confidence 44555665554 3554444454
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=145.28 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=65.8
Q ss_pred cccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cCCceEEEEcCCHHHH
Q 008362 379 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQGRAIILTTHSMEEA 446 (568)
Q Consensus 379 ~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~------~~g~tiil~tH~~~e~ 446 (568)
....+.||||||| |++||+|++.+|++++|||||+|||+.++..+.+.|..+ ..|.+||++||+++++
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 4455799999999 999999999999999999999999999999999988764 1378999999999999
Q ss_pred HHhCC
Q 008362 447 EALCD 451 (568)
Q Consensus 447 ~~l~d 451 (568)
..+|.
T Consensus 1274 ~~~~~ 1278 (1311)
T TIGR00606 1274 ELLGR 1278 (1311)
T ss_pred HHHhh
Confidence 99874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=126.99 Aligned_cols=134 Identities=25% Similarity=0.369 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHhhhcCCCchh---HHHHHH------HHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--CCEE
Q 008362 338 TLTGREHLLFYGRLKNLKGPA---LTQAVE------ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVV 406 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~---~~~~~~------~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~--p~ll 406 (568)
.|++.|.+.|+..+. ++.++ .++.+. ..|..+||.. --.++.+.+|||||.||+-+|.-+=.+ -=++
T Consensus 428 ~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~Y-LtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 428 EMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGY-LTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCc-ccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 577888888877665 22211 111111 2355678853 236899999999999999999988655 2478
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHhc
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKARY 474 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~~-g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~~ 474 (568)
+||||+.||-+.--.++.+.|+++++ |.|+|++.||-+.+. .||+|+=| +.|++++.|+++++++..
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 99999999999999999999999864 999999999987765 59999876 678999999999987643
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-10 Score=128.07 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=64.3
Q ss_pred HcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHH---------HhCCEEEEEECCEEEeecCH
Q 008362 399 LIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAE---------ALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 399 l~~~p~lllLDEPtsgL-D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~---------~l~dri~il~~G~l~~~g~~ 467 (568)
+.++|+++++|||+.+| ||..++.+.+.++.. ++|.+++++||+++++. ..|++.++|.+|++...|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36899999999999999 799999999999986 56899999999999986 57999999999998777754
Q ss_pred HHHHHhcC
Q 008362 468 KELKARYG 475 (568)
Q Consensus 468 ~~l~~~~~ 475 (568)
+ ..+.+|
T Consensus 729 ~-~~~~~g 735 (818)
T PRK13830 729 E-FYERIG 735 (818)
T ss_pred H-HHHHcC
Confidence 3 334343
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-11 Score=143.56 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=71.5
Q ss_pred cccccCCCCChhHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al----~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
..+.++..||||||||++||+++ +.+|+++||||||+|||+..+..+.++|..+.++.+||++||+++.+ .+||+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~ 1160 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQ 1160 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhh
Confidence 45678899999999999999998 46789999999999999999999999999876678999999999987 46999
Q ss_pred EEEEE
Q 008362 453 LGIFV 457 (568)
Q Consensus 453 i~il~ 457 (568)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 87654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=137.99 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=68.0
Q ss_pred ccCCCCChhHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hcC--C-ceEEEEcCCHHHHHHh
Q 008362 380 KQAGKYSGGMKRRLSV------AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQ--G-RAIILTTHSMEEAEAL 449 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~l------a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~~--g-~tiil~tH~~~e~~~l 449 (568)
.++..||||||+|+++ |++++.+|++++|||||+|||+..+..+.+++.. .++ + .+||++||+++.+ ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999875 5899999999999999999999999999999975 332 3 4899999999987 57
Q ss_pred CCEEEEEE
Q 008362 450 CDRLGIFV 457 (568)
Q Consensus 450 ~dri~il~ 457 (568)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-11 Score=122.04 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=98.5
Q ss_pred eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 270 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
+++.++.|+.+++.||+||||||++++|+|+++|..|.+.+.. ...-....+..+++..+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~--------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGG--------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCC---------------
Confidence 6688999999999999999999999999999999988887753 11100000111221111000
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
. . +++....-.++.+|-.+|+++++|||.+ .+.+++++.
T Consensus 200 ------------------------------~--~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a 238 (308)
T TIGR02788 200 ------------------------------Q--G--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRA 238 (308)
T ss_pred ------------------------------C--C--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHH
Confidence 0 0 0011112245566778999999999996 456777777
Q ss_pred hcCCc-eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 430 AKQGR-AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 430 ~~~g~-tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
...|. +++.|+|..+.. ...||+..|..|++.+.|.+.+..
T Consensus 239 ~~~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 239 VNTGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HhcCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 66654 679999999854 459999999999999888877654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=105.48 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=84.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
++.|.|+||+||||+++.+++...+..|.+.+.+.+..... . .+.+. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--~-------------------~~~~~---~~~------ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--L-------------------TERLI---GES------ 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--H-------------------HHHHh---hhh------
Confidence 36899999999999999999988776666654443221110 0 01100 000
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCC----------CCCCHHHHHHHHHHHH
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS----------TGLDPASRNNLWNVVK 428 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPt----------sgLD~~~r~~i~~~l~ 428 (568)
.....+.. ..........+.+..++...+++...+|+++++|||+ ++.|+..++.+.+++.
T Consensus 51 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 51 ----LKGALDNL-----IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ----hccccccE-----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00000111 1222333344566677888999999999999999999 4566666788888877
Q ss_pred Hhc-CCceEEEEcCCHHHHHH
Q 008362 429 RAK-QGRAIILTTHSMEEAEA 448 (568)
Q Consensus 429 ~~~-~g~tiil~tH~~~e~~~ 448 (568)
..+ .+.|+++++|.....+.
T Consensus 122 ~~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 122 RARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHhcCCceEEEEEecCCcccc
Confidence 765 48999999998765433
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-11 Score=126.77 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=48.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRT 317 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~ 317 (568)
..||++||+++++||+++|+||||||||||++ .|+.+|++| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 36899999999999999999999999999999 788888888 79999999864
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.00 E-value=8e-10 Score=133.93 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=71.6
Q ss_pred cccccCCCCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
...+.+.+||||||+++++|++++. +|++++||||++|||+..+..+.++|.+..++..+|++||+.... .+||+
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-Hhcce
Confidence 3456678999999999999999984 789999999999999999999999999887778899999998755 68999
Q ss_pred EEEEEC
Q 008362 453 LGIFVD 458 (568)
Q Consensus 453 i~il~~ 458 (568)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=105.69 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=88.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
.+++|.++.+.|++|+||||+...++ +..+ ..+.+. |+..+ -+..+.+.-..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~------------------y~~~e------~~~~~~~~~~~~- 74 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVY------------------VITTE------NTSKSYLKQMES- 74 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEE------------------EEEcC------CCHHHHHHHHHH-
Confidence 68899999999999999999998774 2222 222332 22221 122222221111
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCCEEEEeCCCCC---CCHHHHHHHHHH
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTG---LDPASRNNLWNV 426 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~--~p~lllLDEPtsg---LD~~~r~~i~~~ 426 (568)
.|..-.+ ...+..+....+ .-......|.++++.+..++..+. +|+++++||||+. .|+...+++.+.
T Consensus 75 ~g~~~~~--~~~~g~l~i~~~-----~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~ 147 (234)
T PRK06067 75 VKIDISD--FFLWGYLRIFPL-----NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTE 147 (234)
T ss_pred CCCChhH--HHhCCCceEEec-----cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHH
Confidence 1111100 000000111111 112234557789999999999997 9999999999964 455555555555
Q ss_pred HHHh-cCCceEEEEcCCHHH-------HHHhCCEEEEEE
Q 008362 427 VKRA-KQGRAIILTTHSMEE-------AEALCDRLGIFV 457 (568)
Q Consensus 427 l~~~-~~g~tiil~tH~~~e-------~~~l~dri~il~ 457 (568)
++.+ ++|.|+++++|...+ ++.++|-++.|+
T Consensus 148 l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 148 AKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 6554 468999999998765 344555555554
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-10 Score=112.40 Aligned_cols=165 Identities=21% Similarity=0.239 Sum_probs=86.1
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 266 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 266 al~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~--Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
-||++ .=.+++|+++.|.|++|+||||+...++ ++ .+..+.+++..........+..+..|+.+|+....+.+.+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence 45553 3478999999999999999999987554 44 45566677776433222222234566655542222222222
Q ss_pred HHHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 343 EHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 343 e~l~~----~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
|.+.. ...+.+.+.++...++.++++..+.. ..++++-.+..+++|||+ .
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~vvIDsl~~l~~~~~~-----~ 140 (229)
T TIGR03881 87 DALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYG---------------------HARLVIDSMSAFWLDKPA-----M 140 (229)
T ss_pred EccccccccccccccCCHHHHHHHHHHHHHhhccC---------------------ceEEEecCchhhhccChH-----H
Confidence 21100 00011122223333333333332221 022333344444445542 2
Q ss_pred HHHHHHHHHHHhc-CCceEEEEcCCHH--------HHHHhCCEEEEEE
Q 008362 419 SRNNLWNVVKRAK-QGRAIILTTHSME--------EAEALCDRLGIFV 457 (568)
Q Consensus 419 ~r~~i~~~l~~~~-~g~tiil~tH~~~--------e~~~l~dri~il~ 457 (568)
.|+.++++.+.++ .|.|+++++|... .++.+||.|+.|+
T Consensus 141 ~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 141 ARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 3444555555444 5999999999654 3566788888776
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-11 Score=131.48 Aligned_cols=160 Identities=21% Similarity=0.256 Sum_probs=106.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMM--IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l--~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
.+++|.++.|.|++||||||+..-. .|..++.+.-+++...+-..+..+..+++|+-.|+..-- +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~------g~l~~--- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE------GKLFI--- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc------CceEE---
Confidence 6889999999999999999999765 566665666777776532222222234556544421100 01110
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA--ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la--~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~ 428 (568)
+.. ... ......++.+++. +..++...++|+|++|||.|+ .++...|+.. +..|+.++++++
T Consensus 88 ~~~-~~~---~~~~~~~~~~~l~--~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~ 151 (484)
T TIGR02655 88 LDA-SPD---PEGQDVVGGFDLS--ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVA 151 (484)
T ss_pred Eec-Cch---hccccccccCCHH--HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHH
Confidence 000 000 0111234556664 367888889999999999999 6666655444 578899999998
Q ss_pred Hhc-CCceEEEEcCCHHH--------H-HHhCCEEEEEE
Q 008362 429 RAK-QGRAIILTTHSMEE--------A-EALCDRLGIFV 457 (568)
Q Consensus 429 ~~~-~g~tiil~tH~~~e--------~-~~l~dri~il~ 457 (568)
.++ .|+|+|++||++++ + +.+||.|+.|+
T Consensus 152 ~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 152 RLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 864 69999999999875 2 67899999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=109.52 Aligned_cols=178 Identities=19% Similarity=0.282 Sum_probs=115.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---HHH------hhcceEEEcCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR------IYTSMGVCPQEDL 334 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~------~r~~ig~~~Q~~~ 334 (568)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.+...|++-+.- .+. .++.+-++.+.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 5699999 99999999999999999999999999999999998877766543221 111 1222333333321
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHHHHHHHHHHHcCCCCEEEEeCC--
Q 008362 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMKRRLSVAISLIGNPKVVYMDEP-- 411 (568)
Q Consensus 335 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~kqrl~la~Al~~~p~lllLDEP-- 411 (568)
++.+...-. ..--.+.+.+...|-. .--...+++- -|-+| .++ +.+.||
T Consensus 230 -----~p~~r~~~~---------~~a~t~AE~frd~G~~----Vll~~DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 230 -----SPLLRLKGA---------YVATAIAEYFRDQGKD----VLLLMDSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred -----CHHHHHHHH---------HHHHHHHHHHHHCCCC----EEEEEeChHHHHHHHH-HHH---------HhcCCCCc
Confidence 233322210 0111233334333421 1111122221 11111 111 234564
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCc-------eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 412 STGLDPASRNNLWNVVKRAK-QGR-------AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~~-~g~-------tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.|.||.....+.+++.+.. .+. ||++.+||+. +.+||++..+.+|+++......+...
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~~~~ 348 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQRGH 348 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhhCCc
Confidence 56999999999999999864 456 8999999984 56899999999999999998877543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-09 Score=116.25 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=70.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE---EECCeeCCCcH-------HHhhcceEEEcCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---YVQGLDIRTDM-------DRIYTSMGVCPQED 333 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i---~i~G~~i~~~~-------~~~r~~ig~~~Q~~ 333 (568)
..|++++ +++.+||+++|+|+||+|||||+++|+|+.+|+.+.+ -.+|.++..-. ...|..++++||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5799999 9999999999999999999999999999999986433 33443432211 11345799999999
Q ss_pred CCCCCCCHHHHHHHHhhhc
Q 008362 334 LLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 334 ~l~~~lTv~e~l~~~~~l~ 352 (568)
..+..+++.+++...+...
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999998877654
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-09 Score=125.11 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=67.3
Q ss_pred cCCCCChhHHH------HHHHHHHHcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCc-eEEEEcCCHHHH
Q 008362 381 QAGKYSGGMKR------RLSVAISLIGN-----P-KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGR-AIILTTHSMEEA 446 (568)
Q Consensus 381 ~~~~LSgG~kq------rl~la~Al~~~-----p-~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~-tiil~tH~~~e~ 446 (568)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|..+. .|. +||++||+++.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 88999898853 2 6799999999999999999999998864 454 899999999988
Q ss_pred HHhCCEEEEEECC
Q 008362 447 EALCDRLGIFVDG 459 (568)
Q Consensus 447 ~~l~dri~il~~G 459 (568)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 69999999754
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-09 Score=103.48 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
++||.||||||||||.++|.+++ ..|.+.+.+ +++. +..++..+.........+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~------------------~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS------------------QDSY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE------------------eccc-ccccccccHHHhccCCCCCCCcc
Confidence 58999999999999999999988 334443333 3321 11122222222111111212222
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
..+...+.++.+... +..+.+..++|.|++++..+ .+.+++++|+|+|..+.++.
T Consensus 60 ~~~~~~~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 223444566666553 35678888999999876655 57889999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-09 Score=109.59 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHHcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 384 KYSGGMKRRLSVAISLIG---------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~---------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
.+|.||||++.+|++|+. +|++++||||+++||+..|+.+++.|.+. |..+++|||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 699999999999999999 99999999999999999999999999754 679999999998655
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-08 Score=109.49 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=70.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC---eeCCC---
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---LDIRT--- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G---~~i~~--- 317 (568)
+.++.+++++.|.. ...+++.++ .+.+||+++|+||||+|||||+++|+|+.+|+.|.+.+.| .++..
T Consensus 138 ~~~~r~~v~~~l~T-----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~ 211 (450)
T PRK06002 138 PAMTRARVETGLRT-----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLE 211 (450)
T ss_pred CCeEeecceEEcCC-----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhH
Confidence 46899999999974 367999996 9999999999999999999999999999999999998864 55532
Q ss_pred -cHHHh-hcceEEEcCCCC
Q 008362 318 -DMDRI-YTSMGVCPQEDL 334 (568)
Q Consensus 318 -~~~~~-r~~ig~~~Q~~~ 334 (568)
..... ++.+++++|.+.
T Consensus 212 ~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 212 DTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHhhCCeEEEEEcCCC
Confidence 11222 357999999864
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=98.67 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=44.0
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
++++||..+|+++++|||. |++. +...++....|..++.|+|..+.++ ..||+..|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLET---IRLALTAAETGHLVMSTLHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEEEEecCCcHHH-HHhHHHhhc
Confidence 4788999999999999996 5554 3444444567999999999998765 579987664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-09 Score=100.79 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=61.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCC--CCCCCCCCHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE--DLLWETLTGRE 343 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~--~~l~~~lTv~e 343 (568)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+|+.|.+.+.+..-... ..+..++++.|. +...+..|..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 34445567889999999999999999999999999999999999977432211 122345665554 34566778888
Q ss_pred HHHHHhhh
Q 008362 344 HLLFYGRL 351 (568)
Q Consensus 344 ~l~~~~~l 351 (568)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88765543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=83.51 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=82.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~ 354 (568)
++..+.|.||+|+||||+++.|+....... +-+.++...........+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887655 5566655433221111101
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH------HHH
Q 008362 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN------VVK 428 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~------~l~ 428 (568)
. ...........+++..+..+++|--.+|+++++||+..-.+......... ...
T Consensus 51 ------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 51 ------------------L--IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred ------------------h--hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0 12233444677788888888888887899999999999999988877654 122
Q ss_pred H-hcCCceEEEEcCC
Q 008362 429 R-AKQGRAIILTTHS 442 (568)
Q Consensus 429 ~-~~~g~tiil~tH~ 442 (568)
. ...+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 2 3457889999984
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=88.98 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=64.2
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
+..+.....|-|+-=---+.+.+- +--+.+||||-++|.|.-+-++...|+++ +.|.-+|++||+.=....=.-+|.-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~ 200 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYE 200 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEE
Confidence 345566778999977666666654 56799999999999999999999999986 5699999999997655433456666
Q ss_pred EECCE
Q 008362 456 FVDGS 460 (568)
Q Consensus 456 l~~G~ 460 (568)
++.+.
T Consensus 201 ~~~~g 205 (233)
T COG3910 201 ISESG 205 (233)
T ss_pred EecCC
Confidence 66554
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-07 Score=104.94 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=49.3
Q ss_pred HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgL-D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
+++++.++|+++++|||+.+| ||..++.+.+.++.. +.|.+++++||+++++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 799999999999886 568999999999998875
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.6e-08 Score=101.73 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=63.2
Q ss_pred CCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEE
Q 008362 384 KYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~ 454 (568)
.+|+||||++.+|+.|+ ++|++++||||+++||+..++.+++.+.... .++|-+|+ ....||++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceEE
Confidence 58999999999999999 9999999999999999999999999886532 34444443 345799999
Q ss_pred EEECCEEEeec
Q 008362 455 IFVDGSLQCIG 465 (568)
Q Consensus 455 il~~G~l~~~g 465 (568)
.+.+|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999875443
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.5e-08 Score=102.89 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=108.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECC---eeCCCcH-HHh---hcceEEE-----c
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQG---LDIRTDM-DRI---YTSMGVC-----P 330 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G---~~i~~~~-~~~---r~~ig~~-----~ 330 (568)
..|+|++ +.+.+||.++|+|+||+|||||+++|+|+.++ +.|.+.+.| .++..-. +.+ ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5699998 99999999999999999999999999999854 446676644 5553211 111 1234555 8
Q ss_pred CCCC--CCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCC---CCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 331 QEDL--LWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLF---HGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 331 Q~~~--l~~~lTv~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~---~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
|++. +.+.+ +...+.-+.+.+|.. ..+...+..+++++++|. .......+++.+|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~--------------- 294 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST--------------- 294 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH---------------
Confidence 8762 44444 444454444445533 245667888999999993 11345666666553
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh---cCC-----ceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA---KQG-----RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~---~~g-----~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
+-.++.+. .+| -||++..+|+++. ++|.+.-+-||+++-.-...+
T Consensus 295 --------------------l~~llERag~~~~GSITai~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~la~ 347 (442)
T PRK06315 295 --------------------LPKLLERSGASDKGTITAFYTVLVAGDDMNEP--VADEVKSILDGHIVLSNALAQ 347 (442)
T ss_pred --------------------hHHHHHHhcCCCCcceeeeEEEEecCCCCCcc--cHHHhhhhcceEEEEeccHHH
Confidence 11222221 123 2677777888754 688888888999988765544
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=116.36 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=57.1
Q ss_pred cccccCCCCChhHHHHHH----HHHH--------HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 377 VADKQAGKYSGGMKRRLS----VAIS--------LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~----la~A--------l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
..++.++.||||||||++ +|++ +..+|++++|||||+|+|+..++.+++++.++ |.++|+|||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 456668999999999996 4644 55899999999999999999999999999887 78899999975
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=92.12 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=38.2
Q ss_pred HcCCCCEEEEeCCCC------CCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHH
Q 008362 399 LIGNPKVVYMDEPST------GLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEE 445 (568)
Q Consensus 399 l~~~p~lllLDEPts------gLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e 445 (568)
...+|+++++| |++ ..|+..++.+.+.+.++ + .|.+||+++|....
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 35899999999 765 47999999999998875 3 48999999998654
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-08 Score=92.56 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
+||+++++|+|||||||++++|+|++.| +.++|.++.......+...|+.+|+...++..++.++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999887 588998875432222223566666654444444444443
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=109.22 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=67.5
Q ss_pred cccCCCCChhHHHHHHHHHHH------cCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh
Q 008362 379 DKQAGKYSGGMKRRLSVAISL------IGN--PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL 449 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al------~~~--p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l 449 (568)
-+++.+||||++-.++||.|| .++ -+.++|||||..||+..++.+.++|..+. .+++|+++||+-+..+ .
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-R 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-h
Confidence 378899999999977776665 466 69999999999999999999999999874 5899999999976665 5
Q ss_pred CCEEEEEECC
Q 008362 450 CDRLGIFVDG 459 (568)
Q Consensus 450 ~dri~il~~G 459 (568)
+|+++.+...
T Consensus 889 ~~~~i~V~k~ 898 (908)
T COG0419 889 ADVRIRVKKD 898 (908)
T ss_pred CCeEEEEEec
Confidence 8887777643
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.6e-08 Score=97.92 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~--p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.++||.||||||||||.++|.+++. |++|+|.+-+.|-.......++..|+. |.....+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 5999999999999999999999988 788998886666433333344456654 7667778899999888877765
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-07 Score=103.96 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=94.4
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE-EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 266 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 266 al~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~-i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
-||.+ .=.+.+|+++.|.|++|+|||||+..++.......+. +++.+++...+.....+++|+..+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~------------ 149 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP------------ 149 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH------------
Confidence 35554 2379999999999999999999999887765554444 566765432111111122332111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCC--------
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL-------- 415 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgL-------- 415 (568)
++.+.. ... .+++++ .+ --.+|+++++|.-++=.
T Consensus 150 ~l~~~~------e~~----~~~I~~--------------------------~i--~~~~~~~vVIDSIq~l~~~~~~~~~ 191 (454)
T TIGR00416 150 NLYVLS------ETN----WEQICA--------------------------NI--EEENPQACVIDSIQTLYSPDISSAP 191 (454)
T ss_pred HeEEcC------CCC----HHHHHH--------------------------HH--HhcCCcEEEEecchhhcccccccCC
Confidence 111100 000 011110 00 11478999999754311
Q ss_pred -CHHHHHHHHHHHHH-hc-CCceEEEEcCCHHH--------HHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 416 -DPASRNNLWNVVKR-AK-QGRAIILTTHSMEE--------AEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 416 -D~~~r~~i~~~l~~-~~-~g~tiil~tH~~~e--------~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
++...+++...|.+ .+ .|.|+++++|...+ ++.+||.|+.|+.++.........+|++++.
T Consensus 192 g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~ 263 (454)
T TIGR00416 192 GSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGA 263 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCC
Confidence 12233444444444 34 59999999997765 6889999999987765444556667888774
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-06 Score=98.87 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=45.4
Q ss_pred HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLD-PASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD-~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
.+.++|+++++|||..+|| |..++.+.+.++.. +.|.+++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4678999999999999999 99999999999886 568999999999988654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-07 Score=102.19 Aligned_cols=110 Identities=24% Similarity=0.335 Sum_probs=76.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--------EEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSG--------TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--------~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
..+.+.|+||||+||||+.+++.+..++..| -+.++|.++..+...+ ++-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHhc
Confidence 4567999999999999999999998876544 3666665442211111 01111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l 427 (568)
.. ..+...+...+.++.+|+. +..+..+.++||| +|+||| +..||+..+..+.+.+
T Consensus 234 -g~----~~~~~~~~a~~~l~~~gl~--~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 234 -GS----VHDPIYQGARRDLAETGVP--EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred -CC----ccHHHHHHHHHHHHHcCCC--chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 00 1112223455567888886 3678889999999 999999 7999999999999998
Q ss_pred HH
Q 008362 428 KR 429 (568)
Q Consensus 428 ~~ 429 (568)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 65
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.4e-07 Score=104.30 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=90.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.+-+|+++. +.+.+..|.|||++||||++|.++-.. -+.-| .+||=... .+.+.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G--------------------~~VPa~~a---~i~~~d 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG--------------------SFVPAESA---RIGIVD 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC--------------------Cceeccce---EecccC
Confidence 466788888 778899999999999999999986421 11111 12332211 011111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCCEEEEeCC---CCCCCHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEP---STGLDPA 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~--~p~lllLDEP---tsgLD~~ 418 (568)
.+ +-++|- .|.....+|.-|.....++.+|-. +++++|+||| |+.+|..
T Consensus 652 ~I---------------------~triga-----~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 652 RI---------------------FTRIGA-----SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred ee---------------------eeccCc-----ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 11 111221 233444567666666666666554 8999999999 8888843
Q ss_pred HHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 419 SRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 419 ~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
...|.+++.+. . +.++|++||+ .++..++++.--+.+..+.+
T Consensus 706 --aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~~~~v~n~~m~~ 749 (854)
T PRK05399 706 --SIAWAVAEYLHDKIGAKTLFATHY-HELTELEEKLPGVKNVHVAV 749 (854)
T ss_pred --HHHHHHHHHHHhcCCceEEEEech-HHHHHHhhhcCCeEEEEEEE
Confidence 45677776653 3 5899999999 55666787643334444433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-07 Score=109.44 Aligned_cols=144 Identities=18% Similarity=0.247 Sum_probs=86.1
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
=++++.++++++||+|++|+|||||++.+.+. ....+|.+++++..+...... +-.+... + .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~------~~~~~~~--~-----~~~~~ 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEI------YSSANPD--D-----YNMKL 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhh------ccccccc--c-----cchhH
Confidence 35677889999999999999999999999554 445689999876433211100 0011100 0 01111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l 427 (568)
. ..++.+.++++..++. +..+ ++.|+|+ .+++-+|+||+- |. ...|+.+
T Consensus 266 ~---------l~~~~l~~il~~~~~~--------~~~~-~~~~~~L------~~krvLLVLDdv----~~---~~~l~~L 314 (1153)
T PLN03210 266 H---------LQRAFLSEILDKKDIK--------IYHL-GAMEERL------KHRKVLIFIDDL----DD---QDVLDAL 314 (1153)
T ss_pred H---------HHHHHHHHHhCCCCcc--------cCCH-HHHHHHH------hCCeEEEEEeCC----CC---HHHHHHH
Confidence 0 0112334444444432 1222 5666663 466778888984 32 3456666
Q ss_pred HHh----cCCceEEEEcCCHHHHHHh-CCEEEEE
Q 008362 428 KRA----KQGRAIILTTHSMEEAEAL-CDRLGIF 456 (568)
Q Consensus 428 ~~~----~~g~tiil~tH~~~e~~~l-~dri~il 456 (568)
... ..|.+||+|||+.+.+... +|+++-+
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 542 3588999999999988765 6776655
|
syringae 6; Provisional |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.47 E-value=7e-08 Score=89.13 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 360 ~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A-----l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
..++.+.++..+..- -....++..+|++++++...... ....++++ |+|++|+...+++++.|.+
T Consensus 99 ~~~~~~~l~~~~~~v-i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 99 DLEMLDWLEELGIPF-LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred HHHHHHHHHHcCCCE-EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence 344556666666431 12445577789998887765554 24556666 9999999999999999875
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=92.89 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE----EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~----i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
+..++||.||||||||||.++|++++++++|. +.+++... ....+...|++++.+ ..+.+++.+...+...+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---DNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---CHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999998 44444322 223344568887744 34567888877776665
Q ss_pred c
Q 008362 352 K 352 (568)
Q Consensus 352 ~ 352 (568)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 4
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-07 Score=91.38 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH--HHHHHcC-CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 008362 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS--VAISLIG-NPKVVYMDEPSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 361 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~--la~Al~~-~p~lllLDEPtsgLD~~~r~~i~~~l~~~ 430 (568)
.++.+.++..++.- -..-.++..+|+|++|++. ++..+-. +++++ |+|++|+.+.+++.+.|.++
T Consensus 125 ~~i~~~l~~~~~~~-iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 125 LQMIEWLKEYGIPV-LIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHHHcCCcE-EEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 34555666666531 2445677889999999877 5555533 34443 99999999999999999874
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-07 Score=88.44 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++|++++|+||+|||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-06 Score=88.95 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=75.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
..++.++.+.||+||||||+++.+.+.++ +..|.|...+.++... .....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~---~~~~~~~i~q~-------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV---HRNKRSLINQR-------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh---ccCccceEEcc--------------------
Confidence 35688999999999999999999998665 4456665443222100 00000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~ 432 (568)
.++.. ..+ -.-++++||-.+|+++++||+. |+.+.... ++....
T Consensus 176 ----------------evg~~--------~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~aa~t 219 (343)
T TIGR01420 176 ----------------EVGLD--------TLS------FANALRAALREDPDVILIGEMR---DLETVELA---LTAAET 219 (343)
T ss_pred ----------------ccCCC--------CcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HHHHHc
Confidence 01110 000 1223667888999999999997 88776543 334567
Q ss_pred CceEEEEcCCHHHHHHhCCEEEEE
Q 008362 433 GRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 433 g~tiil~tH~~~e~~~l~dri~il 456 (568)
|.+++.|.|..+... ..+|+.-|
T Consensus 220 Gh~v~~T~Ha~~~~~-~~~Rl~~~ 242 (343)
T TIGR01420 220 GHLVFGTLHTNSAAQ-TIERIIDV 242 (343)
T ss_pred CCcEEEEEcCCCHHH-HHHHHHHh
Confidence 999999999976654 45776544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6e-07 Score=93.56 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=55.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-------HHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-------MDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-------~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|.... ....+..+++++|.....+..++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999889999998887431 1123566899998755555445556554
|
|
| >PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-07 Score=97.26 Aligned_cols=150 Identities=21% Similarity=0.415 Sum_probs=0.0
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 008362 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASV 81 (568)
Q Consensus 2 m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~~ 81 (568)
|+++|++++.||++++++.++++++..++++++ +++...++..++..+++++++|+++.+++++++|.+|++++.|..
T Consensus 194 l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~ 271 (344)
T PF12698_consen 194 LLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAIS 271 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 679999999999999988887766555444332 333222333466667788999999999999999999999988875
Q ss_pred HHHhHHh-hhhHHHHHHHHhhccCCCcchhhhhhhcccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCCccchHHH
Q 008362 82 IGYICVF-GTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEV 160 (568)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 160 (568)
++.++.+ ..+....+ +. .. ..+..+..+..++|.+.+..++..+.. +. |.. ....
T Consensus 272 ~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~i~~~~P~~~~~~~~~~~~~-----------~~-~~~-------~~~~ 327 (344)
T PF12698_consen 272 VASIIILLLSFLSGGF-FP--LS--SLPSFLQWISSFLPFYWFIQGLRNIIY-----------GD-WSE-------IWIS 327 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-Hh--HH--hhHHHHHHHHHHhhHHHHHHHHHHHHH-----------hc-HHH-------HHHH
Confidence 5544433 22111111 11 11 122333345668899988777765531 11 111 2245
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008362 161 LIIMFVEWLLLLGIAYY 177 (568)
Q Consensus 161 ~~~~~~~~~l~~~l~~y 177 (568)
++++++.+++|+++++|
T Consensus 328 ~~~l~~~~~v~~~l~~~ 344 (344)
T PF12698_consen 328 LIILLLFAVVYLLLAIL 344 (344)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77788889999998876
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=85.92 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCC---------HHHHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDE-----PSTGLDPASRNNLWNVVKRAK-QGRAIILTTHS---------MEEAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDE-----PtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~---------~~e~~~l~dri~il~ 457 (568)
.+++.+++|= |+.+.|+..++.+.++++.++ .|.|+++++|. +..++.+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 3688899993 344556667788888888864 59999999995 344788999999994
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=94.15 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=58.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eEEEECCeeCCCcHHH-----hhcceEEEcCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDR-----IYTSMGVCPQED 333 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~---G~i~i~G~~i~~~~~~-----~r~~ig~~~Q~~ 333 (568)
..+++++ +.+.+||+++|+|+||+|||||+++|++...++. |.|...|.++..-.++ .++++++++...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 5799999 9999999999999999999999999999999987 9999999987542222 235778887654
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.3e-07 Score=92.27 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=61.6
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhhc-ceEEEcCCCCC---C-CC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYT-SMGVCPQEDLL---W-ET 338 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r~-~ig~~~Q~~~l---~-~~ 338 (568)
++.+...+. +++++++|+||+|||||+|.|.|...++.|++.. .|...+.....++. ..|++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444454 5899999999999999999999999999999976 45444433333332 36899998876 3 46
Q ss_pred CCHHHHHHHHhhh
Q 008362 339 LTGREHLLFYGRL 351 (568)
Q Consensus 339 lTv~e~l~~~~~l 351 (568)
++..|...++..+
T Consensus 231 ~~~~~~~~~f~~~ 243 (287)
T cd01854 231 IDPEELAHYFPEF 243 (287)
T ss_pred CCHHHHHHHhHHH
Confidence 8888888776544
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-06 Score=74.03 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=40.1
Q ss_pred ccccCCCCChhHHH-HHHHHH------HHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 378 ADKQAGKYSGGMKR-RLSVAI------SLIG------NPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 378 ~~~~~~~LSgG~kq-rl~la~------Al~~------~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
..+..+++|||||| .+.+|. .+-. .|++++||||+++||+..++.+.+++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35788999999995 333333 3333 3799999999999999999999999864
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-07 Score=89.85 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
++|+++||.||||||||||++.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=91.46 Aligned_cols=73 Identities=19% Similarity=0.419 Sum_probs=54.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
..++++.++.+++|++++|+||||+|||||+..|++......|. ++++++..+.. .....|
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------------~~V~lit~D~~---R~ga~E 184 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------------SKVALLTTDSY---RIGGHE 184 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------------CeEEEEecccc---cccHHH
Confidence 34677888889999999999999999999999999854222221 34677776543 236788
Q ss_pred HHHHHhhhcCCC
Q 008362 344 HLLFYGRLKNLK 355 (568)
Q Consensus 344 ~l~~~~~l~~~~ 355 (568)
++..|++..|.+
T Consensus 185 qL~~~a~~~gv~ 196 (374)
T PRK14722 185 QLRIFGKILGVP 196 (374)
T ss_pred HHHHHHHHcCCc
Confidence 998887766543
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.4e-06 Score=95.22 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=52.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
++++.++.+++|++++++||||+||||++..|++.+....|. ++++++..+.. .....|.+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------------kkV~lit~Dt~---RigA~eQL 234 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----------------DQLALLTTDSF---RIGALEQL 234 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------------CeEEEecCccc---chHHHHHH
Confidence 567778888889999999999999999999999987654441 23566655531 23467888
Q ss_pred HHHhhhcCCC
Q 008362 346 LFYGRLKNLK 355 (568)
Q Consensus 346 ~~~~~l~~~~ 355 (568)
..++...+++
T Consensus 235 ~~~a~~~gvp 244 (767)
T PRK14723 235 RIYGRILGVP 244 (767)
T ss_pred HHHHHhCCCC
Confidence 8887776653
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=93.92 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=57.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~ 314 (568)
+.++.+++++.+.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~t-----Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMT-----GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCC-----Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 35778888888853 36799999 9999999999999999999999999999999999988877764
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-06 Score=89.29 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=99.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH------hhcceEEEcCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR------IYTSMGVCPQEDL 334 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~------~r~~ig~~~Q~~~ 334 (568)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+..-|++-+. -.+. +.+.+-++.+.+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d- 134 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSD- 134 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCC-
Confidence 5799999 9999999999999999999999999999999999988887754322 1111 122344444433
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCC--C
Q 008362 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP--S 412 (568)
Q Consensus 335 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEP--t 412 (568)
.++.++..-.. . .- .+.+.+...|-+ . ---..+++ | .|+|+-- =-+.+.|| .
T Consensus 135 ----~~~~~r~~~~~-~-------a~-~~AEyfr~~g~~---V-ll~~Dslt-----r--~a~A~re--i~~~~ge~p~~ 188 (326)
T cd01136 135 ----ESPLLRVKAAY-T-------AT-AIAEYFRDQGKD---V-LLLMDSLT-----R--FAMAQRE--IGLAAGEPPTT 188 (326)
T ss_pred ----CCHHHHHHHHH-H-------HH-HHHHHHHHcCCC---e-EEEeccch-----H--HHHHHHH--HHHhcCCCCCc
Confidence 24444443210 0 00 112222222321 0 00111111 1 2222100 01224454 6
Q ss_pred CCCCHHHHHHHHHHHHHhc---CC-ceEEEEcC----CHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 413 TGLDPASRNNLWNVVKRAK---QG-RAIILTTH----SMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 413 sgLD~~~r~~i~~~l~~~~---~g-~tiil~tH----~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
.|.+|..-..+-+++.+.. .| .|.+-+-. ||+ +.++|.+.-+-||+++..-...+
T Consensus 189 ~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~--dpi~~~~~~~~dg~ivL~r~la~ 251 (326)
T cd01136 189 KGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN--EPIADAVRSILDGHIVLSRALAA 251 (326)
T ss_pred CCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCC--cchHHhhhhccceEEEEcCcHHH
Confidence 7888888888888887642 34 45554332 222 34566666777888887655443
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=83.58 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQE 332 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~ 332 (568)
|++++|+|||||||||++++|++...| .+.+.+..+... ....+..+++.+|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998876 577777766432 12233445555554
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-06 Score=90.44 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=62.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
-++.+.-.+++|++++++|+||+|||||++.|+|...|+.|+|.++|..... ...++.+++++|...+++. .+..++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555566678999999999999999999999999999999999998754321 1234679999998888764 556565
Q ss_pred HHH
Q 008362 346 LFY 348 (568)
Q Consensus 346 ~~~ 348 (568)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 553
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-06 Score=90.92 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-EECCee
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLD 314 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-~i~G~~ 314 (568)
.+.+|+++.|.|++|+|||||+..++.......|.+ ++.+++
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 689999999999999999999999987766554555 455543
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-06 Score=82.85 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH--HHHhCCEEEEEECC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE--AEALCDRLGIFVDG 459 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e--~~~l~dri~il~~G 459 (568)
|+-+|..||.++..+|+.+..+| +.+||..++++++.+.+.. +|.+|++.+|.+.+ ...+||++++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 88899999999999999988877 8999999999999998764 46899999999976 77889999887654
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.4e-06 Score=90.66 Aligned_cols=64 Identities=23% Similarity=0.495 Sum_probs=44.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN 353 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~ 353 (568)
+++|++++|+||||+|||||++.|+|...-..| ...+|++..+.. .....|.+..++++.|
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------------~~~v~~i~~d~~---rigalEQL~~~a~ilG 248 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------------ADKVALLTTDSY---RIGGHEQLRIYGKLLG 248 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecCCc---chhHHHHHHHHHHHcC
Confidence 468999999999999999999999985311111 012455555442 2367788888888777
Q ss_pred CCc
Q 008362 354 LKG 356 (568)
Q Consensus 354 ~~~ 356 (568)
++.
T Consensus 249 vp~ 251 (420)
T PRK14721 249 VSV 251 (420)
T ss_pred Cce
Confidence 653
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-06 Score=95.01 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=57.1
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
..|+++.||+ +.+++++++.+..|+.++++||||+||||+++.|.|+++|.+|+..+++..+.
T Consensus 187 ~~d~~~v~Gq------~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQ------EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECc------HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 4588999973 56999999999999999999999999999999999999999999999886653
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-05 Score=72.47 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCceEEEEcCCHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK------QGRAIILTTHSME 444 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~------~g~tiil~tH~~~ 444 (568)
++......+...++.++++||.-.. ++.....+.+.+.... .+..+|++|++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555666677788999999998765 6667778888887742 4778999998765
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 568 | ||||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-27 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-24 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-22 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-22 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-21 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-20 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-20 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-20 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-20 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-20 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-20 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-19 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-19 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-19 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-18 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-18 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 8e-18 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-17 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-16 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-16 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-15 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-15 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-14 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-14 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-13 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-13 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 8e-13 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-13 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-12 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-12 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-12 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-11 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-11 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-11 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-11 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-11 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-11 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-10 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-09 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-09 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 7e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-08 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-08 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-08 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-08 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 5e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-04 |
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 1e-88
Identities = 68/236 (28%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
A++ +LRK +K + G+S + GE FG++GPNGAGKTT + ++ + + +
Sbjct: 15 AVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
SG V G ++ + + + P+E + + G E+L F + + VE
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+ + L G + YS GM R+L +A +L+ NP++ +DEP++GLD + +
Sbjct: 129 RATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 425 NVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
++K+ +++G I++++H+M E E LCDR+ + +G++ G +ELK RY +
Sbjct: 187 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 242
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 8e-67
Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 22/225 (9%)
Query: 239 EPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298
+ +L Y +K + +++ + G GPNG GKTT + +
Sbjct: 4 HHHHGSKLEIRDLSVGY-------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56
Query: 299 GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358
+ G G+ I +I P+E ++ ++ ++L L +K
Sbjct: 57 TYLKPLKGEIIYNGVPITKVKGKI----FFLPEEIIVPRKISVEDYLKAVASLYGVKV-- 110
Query: 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
+ ++L+SV + K+ G+ S G RR+ +A +L+ N ++ +D+P +D
Sbjct: 111 NKNEIMDALESVEVLD---LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167
Query: 419 SRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
S++ + + ++G II + + CD S
Sbjct: 168 SKHKVLKSILEILKEKGIVIISSREELSY----CDVNENLHKYST 208
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 6e-42
Identities = 56/257 (21%), Positives = 110/257 (42%), Gaps = 21/257 (8%)
Query: 227 TQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 285
+ L P SH +I D + ++ G+ + +S + G+ + + G
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQLDQIGRMKQGK------TILKKISWQIAKGDKWILYGL 55
Query: 286 NGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIYTSMGVCPQE--DLLWETLT 340
NGAGKTT ++++ TSGT + G + + +G + E
Sbjct: 56 NGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGER 115
Query: 341 GREHLL--FYGRLKNLK--GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396
+ ++ + + + + + LK V + A + G S G K+R+ +A
Sbjct: 116 VIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA--KAQQYIGYLSTGEKQRVMIA 173
Query: 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGR--AIILTTHSMEEAEALCDRL 453
+L+G P+V+ +DEP+ GLD +R +L +++ + A+I TH +EE A ++
Sbjct: 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKI 233
Query: 454 GIFVDGSLQCIGNPKEL 470
+ DG G +++
Sbjct: 234 LLLKDGQSIQQGAVEDI 250
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-40
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
Query: 245 AIISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
I N+ I+ G P EK A+ +SL + GEC + G G+GK+T + ++ G+
Sbjct: 2 RIEVVNVSHIFH--RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 304 TSGTAYVQGLDIRTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA-LT 360
TSG G I ++G+ Q ED + + + F +KN
Sbjct: 60 TSGDVLYDGER--KKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAF-A-VKNFYPDRDPV 114
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
V+++++ V L D+ SGG KRR+++A ++ P ++ +DEP GLD +
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 421 NNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+L +V++ G+ +IL +H +E DR+ + G G E
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-40
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 20/238 (8%)
Query: 243 SHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
I+ + L Y DG A+ G+++ + GE +LG NG GK+T GI
Sbjct: 4 EDYILKVEELNYNYS--DGTH---ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58
Query: 302 RTTSGTAYVQGLDIRTD---MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKG 356
+ +SG I + ++ S+G+ Q ++ L+ + + + F G N+K
Sbjct: 59 KPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSF-G-AVNMKL 115
Query: 357 PA--LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414
P + + V+ +LK + H + DK S G K+R+++A L+ PKV+ +DEP+ G
Sbjct: 116 PEDEIRKRVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 415 LDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
LDP + + ++ + G II+ TH ++ CD + + +G + GNPKE+
Sbjct: 174 LDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-38
Identities = 58/272 (21%), Positives = 111/272 (40%), Gaps = 23/272 (8%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ G E+ ++ ++L + GE +LGPNG+GKTT + + G+ SG
Sbjct: 5 KNVGITLSG--KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SGNI 60
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
++ G+++ + P+ + T+ + + Y LK L E LK
Sbjct: 61 FINGMEV-RKIRNYIRYSTNLPEAYEIGVTV--NDIVYLYEELKGLDR----DLFLEMLK 113
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
++ L + ++ K S G + +++L P++V +DEP +D A R+ + +K
Sbjct: 114 ALKLGEE-ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFVDGS-LQCIGNPKEL------KARYGGSYVFT 481
+ G+ IL TH ++ + F+ G+ LQ + EL + + +
Sbjct: 173 --EYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVL 230
Query: 482 MTTSADHEEEVESMAKRLSP--GANKIYQISG 511
+ + N+IY I G
Sbjct: 231 DIMDKKVSIVKGDLGMKFGALGSLNRIYGIIG 262
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 8e-30
Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 24/232 (10%)
Query: 230 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 289
+ ++ +L E + + + + GE G+LGPNG G
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIG 306
Query: 290 KTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ---EDLLWETLTGREHLL 346
KTTF +++G G+ + + RI+ + Q E+ + L+
Sbjct: 307 KTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSS--- 363
Query: 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 406
EE K +NL + + SGG ++L +A +L +
Sbjct: 364 --------------WFFEEVTKRLNLHR--LLESNVNDLSGGELQKLYIAATLAKEADLY 407
Query: 407 YMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIF 456
+D+PS+ LD R + +KR ++ + H + + + DR+ +F
Sbjct: 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 55/281 (19%), Positives = 102/281 (36%), Gaps = 31/281 (11%)
Query: 264 KVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIGITRTTSGT-----------AYVQ 311
L P + G+LG NG GKTT + ++ G G +
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFR 70
Query: 312 GLDIRTDMDRIYTS----MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
G +I +Y++ + + + L G + + L +E
Sbjct: 71 GKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEI-------LTKIDERGKKDEVK 123
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
+ +N+ + + +K A SGG +RL VA SL+ V D+PS+ LD R N+ +
Sbjct: 124 ELLNMTN--LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + + +I+ H + + L D + I S K AR G +
Sbjct: 182 RELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVG------INNFLK 235
Query: 488 HEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVF 528
E+M R + ++S + K +++ + +
Sbjct: 236 GYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKII 276
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 32/245 (13%)
Query: 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR 302
+ A+ +NL Y L+ L G+ +LG NG GK+T + +++GI R
Sbjct: 2 NKALSVENLGFYYQAE-----NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56
Query: 303 TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF--YGRLKNLKGPALT 360
G +Y S+G PQ + + +L + P
Sbjct: 57 PIQGKI------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104
Query: 361 --QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418
Q ++L +NL H +A ++ SGG ++ + +A ++ K++ +DEP++ LD A
Sbjct: 105 DYQVAMQALDYLNLTH--LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 419 SRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE------L 470
+++ + +++ Q ++ TTH + A+ ++ + ++ G + L
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKT-LLLNKQNFKFGETRNILTSENL 221
Query: 471 KARYG 475
A +
Sbjct: 222 TALFH 226
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 9e-29
Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 20/232 (8%)
Query: 230 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 289
E ++ + + S + YP +N E M+G NG G
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTG 390
Query: 290 KTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349
KTT I ++ G + G + L++ +I L ++ + G+
Sbjct: 391 KTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIAPKFP-GTVRQLFFKKIRGQ------- 441
Query: 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409
P Q + +K + + + D++ SGG +R+++ ++L + +D
Sbjct: 442 ----FLNP---QFQTDVVKPLRIDD--IIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492
Query: 410 EPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
EPS LD R V++R + + H A L D++ +F
Sbjct: 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 33/265 (12%)
Query: 244 HAIISDNLRKIYPGR-----DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298
AI NL N K+ G+ G++G NG GK+T + ++
Sbjct: 68 DAIQIINLPTNLEAHVTHRYSANSFKLHR---LPTPRPGQVLGLVGTNGIGKSTALKILA 124
Query: 299 GITRTTSG-----------TAYVQGLDIRTDMDRIYT---SMGVCPQE-DLLWETLTGRE 343
G + G Y +G +++ ++ + PQ D + + G
Sbjct: 125 GKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKG-- 182
Query: 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403
+ G L L+ + V+ +K + L + V + K SGG +R ++ +S +
Sbjct: 183 PVQKVGELLKLRMEKSPEDVKRYIKILQLEN--VLKRDIEKLSGGELQRFAIGMSCVQEA 240
Query: 404 KVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRL-----GIFV 457
V DEPS+ LD R N +++ + +I H + + L D + V
Sbjct: 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
Query: 458 DGSLQCIGNPKELKARYGGSYVFTM 482
G + + +E + ++
Sbjct: 301 YGVVTLPASVREGINIFLDGHIPAE 325
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 59/277 (21%), Positives = 98/277 (35%), Gaps = 30/277 (10%)
Query: 191 LYFLQNF---------KKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPG 241
L L + F KP R F+ D R R ++
Sbjct: 288 LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDE-NVRFRPYEIRFTKL 346
Query: 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
+ + YP + + + GE G++GPNG GKTTF+ M+ G+
Sbjct: 347 SERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406
Query: 302 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 361
T G + D+ Y PQ T E L K
Sbjct: 407 EPTEGK-------VEWDLTVAYK-----PQYIKAEYEGTVYELLSKIDSSKLNSN----F 450
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
E LK + + + D+ SGG +R+++A +L+ + + +DEPS LD R
Sbjct: 451 YKTELLKPLGIID--LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508
Query: 422 NLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIF 456
+ ++ K + ++ H + + + DRL +F
Sbjct: 509 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR------TTSGTAYVQGLD-- 314
V + G G++GPNG GKTT + ++ G S ++
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 315 -IRTDMDRIYT-SMGVCPQE---DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
++ +R+ + + DLL + + G+ L LK EE +K
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL-------LKKVDEVGKFEEVVKE 215
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
+ L + V D++ + SGG +R+++A +L+ + DEPS+ LD R + V++R
Sbjct: 216 LELEN--VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 430 -AKQGRAIILTTH 441
A +G+A+++ H
Sbjct: 274 LANEGKAVLVVEH 286
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-26
Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 34/236 (14%)
Query: 230 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 289
R R ++ I YP + + + GE G++GPNG G
Sbjct: 265 RFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 290 KTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY----TSMGVCPQ---EDLLWETLTGR 342
KTTF+ M+ G+ T G I D+ Y + +LL + +
Sbjct: 325 KTTFVKMLAGVEEPTEGK-------IEWDLTVAYKPQYIKA--DYEGTVYELLSKIDASK 375
Query: 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402
+ E LK + + + D++ + SGG +R+++A +L+ +
Sbjct: 376 LN--------------SNFYKTELLKPLGIID--LYDREVNELSGGELQRVAIAATLLRD 419
Query: 403 PKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIF 456
+ +DEPS LD R + ++ K + ++ H + + + DRL +F
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 5e-20
Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 25/218 (11%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT------R 302
+ L + R G V + G G++GPNG GK+T + ++ G
Sbjct: 21 EQLEEDCVHRYG--VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78
Query: 303 TTSGTAYVQGL---DIRTDMDRIYT-SMGVCPQE---DLLWETLTGREHLLFYGRLKNLK 355
S ++ +++ +++ + + DL+ + + G+ L LK
Sbjct: 79 NDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL-------LK 131
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
T +EE +K++ L + V +++ SGG +R+++A +L+ N + DEPS+ L
Sbjct: 132 KADETGKLEEVVKALELEN--VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Query: 416 DPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDR 452
D R N ++R +++G+++++ H + + L D
Sbjct: 190 DIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI 227
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIY 323
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI + +
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL- 79
Query: 324 TSMGVCP--QEDLLWETLTGREHLL--FYGRLKNLKGPAL-----------TQAVEESLK 368
G+ Q + +T E+LL ++ + + L+
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ L H + D++AG+ SGG + + + +L+ NPK++ MDEP G+ P ++++N V
Sbjct: 140 FLKLSH--LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 429 RAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
K +G ++ H ++ D L + +G + G +E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 21/218 (9%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 321
E + LS + +GE ++GPNGAGK+T ++ M G+T G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLE-AWSAT 69
Query: 322 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVAD 379
+ Q+ L + T+ + + ++ L
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-YLTLHQH-----DKTRTELLNDVAGALALDD--KLG 121
Query: 380 KQAGKYSGGMKRRLSVAISL-------IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK 431
+ + SGG +R+ +A + +++ +DEP LD A ++ L ++ ++
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 432 QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
QG AI++++H + R + G + G +E
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 69/303 (22%), Positives = 133/303 (43%), Gaps = 28/303 (9%)
Query: 225 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 284
++ H I N+ K++ A+N +SL +P+G+ +G++G
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIG 61
Query: 285 PNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLT 340
+GAGK+T I + + R T G+ V G ++ +++ + +G+ Q L + T
Sbjct: 62 ASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121
Query: 341 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVA 396
++ L N + + V E L V L DK Y SGG K+R+++A
Sbjct: 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----GDK-HDSYPSNLSGGQKQRVAIA 175
Query: 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLG 454
+L NPKV+ D+ ++ LDPA+ ++ ++K + G I+L TH M+ + +CD +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 235
Query: 455 IFVDGSL-------QCIGNPKELKARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIY 507
+ +G L + +PK A+ ++ + E+ E + +
Sbjct: 236 VISNGELIEQDTVSEVFSHPKTPLAQ---KFIQSTLHLDIPEDYQERLQAEPFTDCVPML 292
Query: 508 QIS 510
++
Sbjct: 293 RLE 295
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
I + KIYPG +V G+S + GE G+LGP+G+GKTT + ++ G+ R T
Sbjct: 14 TIEFVGVEKIYPG-----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 305 SGTAYVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 361
G ++ G + TD+ R ++G+ Q L++ +T +++ F R K + +
Sbjct: 69 KGDVWIGGKRV-TDLPPQKR---NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
V E L+ + L A++ + SGG ++R+++A +L P+V+ DEP +D R
Sbjct: 125 RVRELLRFMRL--ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 422 NLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
L V++ G + TH EEA + DR+ + +G+++ G P+E+
Sbjct: 183 ELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 8e-23
Identities = 60/227 (26%), Positives = 118/227 (51%), Gaps = 21/227 (9%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
++L + + + +++ LSL + SGE F +LGP GAGKT F+ ++ G SG
Sbjct: 5 ESLSRKW-------KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 309 YVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
+ G D+ TD+ + Q L+ + +++L F G ++ +K + V +
Sbjct: 58 LLDGKDV-TDLSPEKH---DIAFVYQNYSLFPHMNVKKNLEF-G-MR-MKKIKDPKRVLD 110
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
+ + + + + D+ SGG ++R+++A +L+ NPK++ +DEP + LDP ++ N
Sbjct: 111 TARDLKI--EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 426 VVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++ + ++ TH EA + DR+ + +DG L +G P+E+
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 51/199 (25%), Positives = 104/199 (52%), Gaps = 13/199 (6%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---DRIYTSMGVCPQED 333
+ +LGP GAGK+ F+ ++ GI + G + G DI T + R +G PQ+
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERR---GIGFVPQDY 79
Query: 334 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393
L+ L+ ++ + G L+N++ + V E + + + + D++ + SGG ++R+
Sbjct: 80 ALFPHLSVYRNIAY-G-LRNVERVERDRRVREMAEKLGI--AHLLDRKPARLSGGERQRV 135
Query: 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCD 451
++A +L+ P+++ +DEP + +D ++ L ++ ++ I+ TH + EA L D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 452 RLGIFVDGSLQCIGNPKEL 470
+ + ++G + G KEL
Sbjct: 196 EVAVMLNGRIVEKGKLKEL 214
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 3e-22
Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 17/229 (7%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+L K + +N +SL+L GE ++G +G GKTT + + G + SG
Sbjct: 8 GHLSKSFQNT------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 309 YVQGLDIRTDMDRIYT---SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA--LTQAV 363
+ G I + + +G QE +L+ LT ++ + G L N KG Q +
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY-G-LGNGKGRTAQERQRI 119
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
E L+ + +A + + SGG ++R ++A +L +P+++ +DEP + LD R +
Sbjct: 120 EAMLELTGI--SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 424 WNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ G++ + +H EEA DR+ + G + +P EL
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-19
Identities = 59/233 (25%), Positives = 121/233 (51%), Gaps = 22/233 (9%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K++ VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ ++G
Sbjct: 7 KNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQE-DL--------LWETLTGREHLLFYGRLKNLKGPAL 359
Y + ++ V P++ + L+ LT E++ F + +
Sbjct: 63 YFDDRLV-ASNGKLI----VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+ VEE K +++ V + + SG ++R+++A +L+ +P ++ +DEP + LD
Sbjct: 118 RKRVEEVAKILDI--HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 420 RNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
R++ +VK + G +++ +H + A+ DR+G+ V G L +G P++L
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 4e-15
Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 46/251 (18%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K Y + G A+ ++L + GE ++GP+G+GK+T ++++ + + T G
Sbjct: 5 KNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDL----------------LWETLTGREHL---LFYG 349
Y+ + D+D ++L L LT E++ L +
Sbjct: 63 YIDNIKT-NDLDD----------DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111
Query: 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKV 405
+ G + E LK + ++ A SGG ++R+++A +L NP +
Sbjct: 112 YRGAMSGEERRKRALECLKMA-----ELEERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 406 VYMDEPSTG-LDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
+ D+P T LD + + ++K+ + G+ +++ TH + A +R+ DG ++
Sbjct: 167 ILADQP-TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
Query: 463 CIGNPKELKAR 473
+ R
Sbjct: 225 REEKLRGFDDR 235
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 5e-15
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 324
A+ G+ L +P G+ ++G NGAGKTT +S + G+ R G G DI I
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI-N 79
Query: 325 SMGVC--PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLF--HGGVAD 379
MG+ P+ ++ LT E+L+ + K + ++ L+ + +LF
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDK-----EGIKRDLEWIFSLFPRLKERLK 134
Query: 380 KQAGKYSGG---MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRA 435
+ G SGG M L++ +L+ PK++ MDEPS GL P + ++ V+++ ++G
Sbjct: 135 QLGGTLSGGEQQM---LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
I+L + A + + G + G EL
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 45/237 (18%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+ ++N++K+ R + G+SL++ GE ++G +G+GK+T + ++ + T
Sbjct: 5 LRAENIKKVI--RGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 306 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE--------HLLFYGR---LKNL 354
G +++G ++ + E L L R+ +L+ L+N+
Sbjct: 59 GKVFLEGKEV-DYTN-----------EKELSL-LRNRKLGFVFQFHYLI--PELTALENV 103
Query: 355 KGPAL---------TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405
P L + E L + L G ++ + SGG ++R+++A +L P +
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGL--GDKLSRKPYELSGGEQQRVAIARALANEPIL 161
Query: 406 VYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
++ DEP+ LD A+ + ++ + + G +I++ TH E A L R DG +
Sbjct: 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKV 217
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 45/247 (18%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
YP P + GL+ L G+ ++GPNG+GK+T ++ + T G +
Sbjct: 26 YPNH---PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL---LQNLYQPTGGKVLLD 79
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
G + D ++T + QE LL+ + RE++ YG + +
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGL----TRTPTMEEITAVAMES 133
Query: 371 N-------LFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
G V + + SGG ++ +++A +LI P+++ +D ++ LD ++
Sbjct: 134 GAHDFISGFPQGYDTEVGET-GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 421 NNLWNVVKRA------KQGRAIILTTH---SMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
V+R R ++L T E A + +GS+ G +L
Sbjct: 193 ----LRVQRLLYESPEWASRTVLLITQQLSLAERA----HHILFLKEGSVCEQGTHLQLM 244
Query: 472 ARYGGSY 478
R GG Y
Sbjct: 245 ER-GGCY 250
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 57/257 (22%), Positives = 123/257 (47%), Gaps = 33/257 (12%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
YP R P + GLSL + G+ ++G +G GK+T + + + R +G+ ++
Sbjct: 1040 YPTR---PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQL---LERFYDPMAGSVFLD 1093
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKS 369
G +I+ ++ + +G+ QE +L++ + E++ YG ++ + + K
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIA-YGD----NSRVVSYEEIVRAAKE 1147
Query: 370 VNLFHGGVA------DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
N+ H + + + G + SGG K+R+++A +L+ P ++ +DE ++ LD S
Sbjct: 1148 ANI-HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
+ + +A++GR I+ H + + D + + +G ++ G ++L A+ G Y
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ-KGIY- 1263
Query: 480 FTMTT--SADHEEEVES 494
F+M + + V
Sbjct: 1264 FSMVSVQAGAKRSYVHH 1280
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 4e-14
Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 32/239 (13%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
YP R E + GL+L + SG+ ++G +G GK+T + + + R G +
Sbjct: 397 YPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL---MQRLYDPLDGMVSID 450
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKS 369
G DIRT ++ + +GV QE +L+ T T E++ YGR +T +E+++K
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIR-YGR------EDVTMDEIEKAVKE 502
Query: 370 VNL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
N F V ++ + SGG K+R+++A +L+ NPK++ +DE ++ LD S
Sbjct: 503 ANAYDFIMKLPHQFDTLVGER-GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + +A++GR I+ H + D + F G + GN EL G Y
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHRLSTVR-NADVIAGFDGGVIVEQGNHDELMRE-KGIY 618
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 65/257 (25%), Positives = 127/257 (49%), Gaps = 28/257 (10%)
Query: 227 TQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 285
L+ +I L+K + G+ E + G+++ + GE ++GP
Sbjct: 5 HHHHHHSSGLVPRGSHMLQMIDVHQLKKSF----GSLE--VLKGINVHIREGEVVVVIGP 58
Query: 286 NGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIYTSMGVCPQEDLLWETLTGR 342
+G+GK+TF+ + + G + G+++ T+++++ +G+ Q L+ +T
Sbjct: 59 SGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118
Query: 343 EHLLFYGRLKNLKGP---ALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSV 395
++ +K K P A +A+E L V G+ D +A Y SGG +R+++
Sbjct: 119 NNITL-APMKVRKWPREKAEAKAMEL-LDKV-----GLKD-KAHAYPDSLSGGQAQRVAI 170
Query: 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLG 454
A +L PK++ DEP++ LDP + +V+K+ A +G +++ TH M A + DR+
Sbjct: 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRV- 229
Query: 455 IFVD-GSLQCIGNPKEL 470
+F+D G + G P++L
Sbjct: 230 LFMDGGYIIEEGKPEDL 246
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-14
Identities = 61/253 (24%), Positives = 121/253 (47%), Gaps = 38/253 (15%)
Query: 242 TSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
S + +L K Y G E + G+SL +G+ ++G +G+GK+TF+ + +
Sbjct: 2 MSENKLHVIDLHKRY----GGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55
Query: 301 TRTTSGTAYVQGLDIR--------------TDMDRIYTSMGVCPQEDLLWETLTGREHLL 346
+ + G V G +I + + T + + Q LW +T E+++
Sbjct: 56 EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM 115
Query: 347 FYGRLKNLKGP---ALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISL 399
++ L A +A + L V G+ ++ GKY SGG ++R+S+A +L
Sbjct: 116 E-APIQVLGLSKHDARERA-LKYLAKV-----GIDERAQGKYPVHLSGGQQQRVSIARAL 168
Query: 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVD 458
P V+ DEP++ LDP + ++++ A++G+ +++ TH M A + + IF+
Sbjct: 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV-IFLH 227
Query: 459 -GSLQCIGNPKEL 470
G ++ G+P+++
Sbjct: 228 QGKIEEEGDPEQV 240
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 38/231 (16%)
Query: 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMDRIY 323
+ ++L++ GE G++G +G+GK+T + I R +G + G D+ D + +
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKL---IQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKSVNLFHGGVADKQA 382
+GV Q+++L + +++ P ++ V + K H +++ +
Sbjct: 83 RQVGVVLQDNVLLNR-SIIDNIS-LAN------PGMSVEKVIYAAKLAGA-HDFISELRE 133
Query: 383 G----------KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432
G SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 433 GRAIILTTHSMEEAEAL-----CDRLGIFVDGSLQCIGNPKELKARYGGSY 478
GR +I+ H L DR+ + G + G KEL + Y
Sbjct: 194 GRTVIIIAHR------LSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 238
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 2e-13
Identities = 50/332 (15%), Positives = 105/332 (31%), Gaps = 43/332 (12%)
Query: 148 ADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRK 207
D+S + + E+L V + + Y Q + +
Sbjct: 341 GDVSTTLQVVNELLKDETVAPRFKIVVEYIAAI---GADLIDERIIDQQAWFTHITPYMT 397
Query: 208 PSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAV 267
L + +K + + E + + Y + +
Sbjct: 398 IFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKIL------L 451
Query: 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 327
N L L +G+ GPNG GK+T + + V G + + +Y
Sbjct: 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQVDGFPTQEECRTVY---- 499
Query: 328 VCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 386
+ D + + + G +A+++ L F + S
Sbjct: 500 -VEHDIDGTHSDTSVLDFV-------FESGVGTKEAIKDKLIEFG-FTDEMIAMPISALS 550
Query: 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446
GG K +L++A +++ N ++ +DEP+ LD + L N + I +H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISHDSVFL 608
Query: 447 EALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ +C+ + + L+ +Y G++
Sbjct: 609 DNVCEYIINYEGLKLR----------KYKGNF 630
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 18/149 (12%)
Query: 331 QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390
++ E R P + +EE + L V+ + SGG K
Sbjct: 854 HSKMVAEVDMKEALASGQFR------PLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQK 907
Query: 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450
+L +A P ++ +DEP+ LD S L +K + +I+ THS E + L
Sbjct: 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE--GGVIIITHSAEFTKNLT 965
Query: 451 DRLGIFVDGSLQCIGNPKELKARYGGSYV 479
+ + DG + G ++V
Sbjct: 966 EEVWAVKDGRMT----------PSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 38/216 (17%), Positives = 64/216 (29%), Gaps = 44/216 (20%)
Query: 227 TQERERVEQLLLEPGTSHAIIS--------DNLRKIYPGRDGNPEKVAVNGLSLALPSGE 278
+E EPG + + N+ YPG K + ++
Sbjct: 645 ELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPG----TSKPQITDINFQCSLSS 700
Query: 279 CFGMLGPNGAGKTTFISMMIGITRTTSGT---------AYV-QGLDIRTDMDRIYTSMGV 328
++GPNGAGK+T I+++ G TSG AY+ Q + T
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKT---- 756
Query: 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388
P E + W TG + + + + A + K G
Sbjct: 757 -PSEYIQWRFQTGEDRETMDRANRQI-----------------NENDAEAMNKIFKIEGT 798
Query: 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+R + Y G + ++ W
Sbjct: 799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERW 834
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 259 DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIR 316
+ ++ +PSG ++G G+GK+T + + R G + G ++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL---LYRFYDAEGDIKIGGKNVN 84
Query: 317 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375
+ + I + +G+ PQ+ +L+ T + ++L YG+L A + V ++ KS L +
Sbjct: 85 KYNRNSIRSIIGIVPQDTILFNE-TIKYNIL-YGKLD-----ATDEEVIKATKSAQL-YD 136
Query: 376 GVA------DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
+ D G K SGG ++R+++A L+ +PK+V DE ++ LD +
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 426 VVKRAKQGRAIILTTH 441
V+ ++ R +I+ H
Sbjct: 197 AVEDLRKNRTLIIIAH 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 1e-12
Identities = 75/524 (14%), Positives = 149/524 (28%), Gaps = 167/524 (31%)
Query: 149 DLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFL-------------- 194
D D ++ K +L +D I+ S A L
Sbjct: 34 DCKDVQDMPKSILS------------KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 195 -------QNFK---KKSRSSFRKPSLGRQ-----------DSKVFVSMEKPDVTQERERV 233
N+K ++ R+PS+ + D++VF K +V+ R+
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVS----RL 134
Query: 234 EQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF 293
+ L + L ++ P + V + G+L G+GKT
Sbjct: 135 QPYL--------KLRQALLELRPA-----KNVLI------------DGVL---GSGKTWV 166
Query: 294 ISMMIGITRTTSGTAYVQGLDIRTDMD-RIY-TSMGVCPQEDLLWETLTGREHLL---FY 348
+ ++ MD +I+ ++ C + + E L + + +
Sbjct: 167 ALDV------------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 349 GRLKNLKGPAL-TQAVEESLKSVNLFHG-----------GVADKQAGK-YSGGMK----- 390
R + L +++ L+ L V + +A ++ K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 391 RRLSVAISLIGN-PKVVYMDEPSTGLDPA-SRNNLWNVV--------KRAKQG--RAIIL 438
R V L + +D S L P ++ L + + R + +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 439 TTHSMEEAEA--------LCDRLGIFVDGSLQCIGNPKELKARYGGSYVF------TMTT 484
S+ + A CD+L ++ SL + P E + + VF
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 485 -----SADHEEEVESMAKRLSP-------GANKIYQISGTQKFELPKQEVRVSDVFQA-V 531
+ +V + +L I EL + + ++ V
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIV 450
Query: 532 EEAKSRFTVFAWGLADTTLEDVF-------IKVARHAQAFEDLP 568
+ T + L L+ F +K H +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 55/424 (12%), Positives = 101/424 (23%), Gaps = 177/424 (41%)
Query: 193 FLQNFKK----KSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQ------LLLEPGT 242
F F K K + E + ++ V LL
Sbjct: 25 FEDAFVDNFDCKDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 243 S--HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300
+ + LR Y F+ I
Sbjct: 77 EMVQKFVEEVLRINYK------------------------------------FLMSPIKT 100
Query: 301 -TRTTSG--TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 357
R S Y++ D + ++++ V + + R+ LL L+ K
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKL---RQALL---ELRPAKNV 153
Query: 358 ALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRLSV-AISLIGNPKV-------VY 407
+ G G +GK + A+ + + KV ++
Sbjct: 154 LI--------------DGVLG-----SGK---------TWVALDVCLSYKVQCKMDFKIF 185
Query: 408 ------MDEPSTGLDPASRNNLW-----NVVKRAKQGRAIILTTHSMEEA--EALCDR-- 452
+ P T L+ L N R+ I L HS++ L +
Sbjct: 186 WLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 453 ---LGIFVDGSLQCIGNPKELKARYGGSYVF-----TMTTSADHEEEVESMAKRLSPGAN 504
L + ++ + N K A F + T+ +
Sbjct: 244 ENCLLVLLN-----VQNAKAWNA-------FNLSCKILLTTRFKQ--------------- 276
Query: 505 KIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAF 564
V+D A + L ++ + +K
Sbjct: 277 -------------------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RP 315
Query: 565 EDLP 568
+DLP
Sbjct: 316 QDLP 319
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 44/192 (22%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319
+ + +S + G+ ++GP+GAGK+T + ++ +SG + G DI
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA- 378
+ + +GV PQ+ +L+ T +++ YGR+ A VE + ++ + H +
Sbjct: 124 ASLRSHIGVVPQDTVLFND-TIADNIR-YGRVT-----AGNDEVEAAAQAAGI-HDAIMA 175
Query: 379 -----DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
Q G K SGG K+R+++A +++ P ++ +DE ++ LD ++ + + +
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
Query: 430 AKQGRAIILTTH 441
R I+ H
Sbjct: 236 VCANRTTIVVAH 247
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 24/173 (13%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT 317
+ + + +S GP+G GK+T S+ + R T+G + G I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSL---LERFYQPTAGEITIDGQPIDN 68
Query: 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
++ + +G Q+ + T RE+L YG +G + + + L
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAG-TIRENLT-YGL----EGDYTDEDLWQVLDLAFA-RSF 121
Query: 377 VADKQAG----------KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
V + K SGG ++RL++A + + NPK++ +DE + LD S
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 37/237 (15%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ K + A+N ++L + GE +LGP+G+GK+T + + GI + TSG
Sbjct: 7 ENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 309 YVQGLDIRTDM---DR----------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355
Y D+ T++ DR +Y M V +++ F L+
Sbjct: 61 YFDEKDV-TELPPKDRNVGLVFQNWALYPHMTV-------------YKNIAFPLELRKAP 106
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
+ + V E K +++ + ++ + SGG ++R+++A +L+ P+V+ +DEP + L
Sbjct: 107 REEIDKKVREVAKMLHIDK--LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNL 164
Query: 416 DPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
D R + +KR ++ G + TH EA A+ DR+ + +G + +G P E+
Sbjct: 165 DALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 27/235 (11%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
++ K++ AV +SL + GE +LGP+G GKTT + M+ G+ + G
Sbjct: 7 VDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQE-DL--------LWETLTGREHLLFYGRLKNLKGPAL 359
Y+ + + V P++ D+ L+ +T +++ F +L+ + +
Sbjct: 61 YIGD----KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI--SLIGNPKVVYMDEPSTGLDP 417
Q V E + + L + +++ + SGG ++R VA+ +++ P+V MDEP + LD
Sbjct: 117 DQRVREVAELLGLTE--LLNRKPRELSGGQRQR--VALGRAIVRKPQVFLMDEPLSNLDA 172
Query: 418 ASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
R + +K+ ++ G I TH EA + DR+ + G LQ +G+P E+
Sbjct: 173 KLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 37/237 (15%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+NL K + AVN L+L + GE +LGP+G GKTT + M+ G+ T G
Sbjct: 15 ENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 309 YVQGLDIRTDM---DR----------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355
Y D+ T + DR ++ M V E++ F ++K
Sbjct: 69 YFGDRDV-TYLPPKDRNISMVFQSYAVWPHMTV-------------YENIAFPLKIKKFP 114
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
+ + V + + + + + ++ + SGG ++R++VA +++ P V+ MDEP + L
Sbjct: 115 KDEIDKRVRWAAELLQIEE--LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
Query: 416 DPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
D R + +K+ +Q I TH EA + DR+ + G L IG+P E+
Sbjct: 173 DAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 51/298 (17%), Positives = 97/298 (32%), Gaps = 56/298 (18%)
Query: 219 VSMEKPDVTQERERVEQLLLEP---GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALP 275
V ME +VT E L E ++ S+ + + ++ +
Sbjct: 5 VVME--NVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
G+ + G GAGKT+ + M++G + G G + C Q
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFCSQNS-- 108
Query: 336 W-ETLTGREHLLF-------YGR----------LKNLKGPALTQAVEESLKSVNLFHGGV 377
W T +E+++ Y + E + L
Sbjct: 109 WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE---GGITL----- 160
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVKRAKQGRAI 436
SGG + R+S+A ++ + + +D P LD + ++ + V + +
Sbjct: 161 --------SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHEEEVES 494
IL T ME + D++ I +GS G EL+ + + ++
Sbjct: 213 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSAE 268
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 41/239 (17%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
NL+K + AV+G+S + GE +LGP+G GKTT + M+ GI + TSG
Sbjct: 7 VNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 309 YVQGLDIRTDM---DR----------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355
Y + + D+ R +Y M V E++ F R + +
Sbjct: 61 YFDDVLV-NDIPPKYREVGMVFQNYALYPHMTV-------------FENIAFPLRARRIS 106
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI--SLIGNPKVVYMDEPST 413
+ + V E + + + + + D++ + SGG ++R VA+ +L+ PKV+ DEP +
Sbjct: 107 KDEVEKRVVEIARKLLIDN--LLDRKPTQLSGGQQQR--VALARALVKQPKVLLFDEPLS 162
Query: 414 GLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
LD R + +K +Q G + TH EA + R+ +F G L G P E+
Sbjct: 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 54/251 (21%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+ +NG++ ++P G ++G G GK++ +S ++ G ++G
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------- 66
Query: 323 YTSMGVCPQEDLLW-ETLTGREHLLF--------YGR----------LKNLKGPALTQAV 363
S+ PQ+ W + + RE++LF Y L+ L T+
Sbjct: 67 --SVAYVPQQA--WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG 122
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
E K VNL SGG K+R+S+A ++ N + D+P + +D ++
Sbjct: 123 E---KGVNL-------------SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 424 WNVV---KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 480
+ V K + + IL THSM D + + G + +G+ +EL AR G++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKISEMGSYQELLAR-DGAFAE 224
Query: 481 TMTTSADHEEE 491
+ T A H
Sbjct: 225 FLRTYASHHHH 235
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 51/231 (22%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+ ++ + G+ + G GAGKT+ + M++G + G G
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69
Query: 323 YTSMGVCPQEDLLW-ETLTGREHLLF--------YGR----------LKNLKGPALTQAV 363
+ C Q W T +E+++F Y +
Sbjct: 70 --RISFCSQFS--WIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
E + L SGG + R+S+A ++ + + +D P LD + +
Sbjct: 126 E---GGITL-------------SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 424 W-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+ + V + + IL T ME + D++ I +GS G EL+
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNL 219
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 4e-09
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 42/238 (17%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
Y ++G++ ++ G +LG G+GK+T +++ I R G V
Sbjct: 351 YFE----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL---IPRLIDPERGRVEVD 403
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTG--REHLLFYGRLKNLKGPALTQAVEESLK 368
LD+RT + + + PQE +L +G +E+L +G + A + E+ K
Sbjct: 404 ELDVRTVKLKDLRGHISAVPQETVL---FSGTIKENLK-WG-----REDATDDEIVEAAK 454
Query: 369 S------VNLFHGGVADK--QAGK-YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+ G + + G+ +SGG K+RLS+A +L+ PKV+ +D+ ++ +DP +
Sbjct: 455 IAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514
Query: 420 RNNLWNVVKRAKQGRAIILTTH---SMEEAEALCDRLGIFV--DGSLQCIGNPKELKA 472
+ + +KR +G + T + A D+ I V +G + G KEL
Sbjct: 515 EKRILDGLKRYTKGCTTFIITQKIPTALLA----DK--ILVLHEGKVAGFGTHKELLE 566
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 69/347 (19%), Positives = 124/347 (35%), Gaps = 48/347 (13%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
+ +L Y +G + +S ++ G+ G+LG G+GK+T +S + + T
Sbjct: 19 QMTVKDLTAKY--TEGGN--AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NT 73
Query: 305 SGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNL--KGP 357
G + G+ + + + GV PQ+ +F G KNL
Sbjct: 74 EGEIQIDGVSWDSITLEQWRK---AFGVIPQK-----------VFIFSGTFRKNLDPNAA 119
Query: 358 ALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRRLSVAISLIGNPKVV 406
Q + + V L V ++ GK S G K+ + +A S++ K++
Sbjct: 120 HSDQEIWKVADEVGL--RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177
Query: 407 YMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCI 464
+DEPS LDP + + +K+A +IL + EA CD+ V + ++
Sbjct: 178 LLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQ--FLVIEENKVRQY 234
Query: 465 GNPKELKARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRV 524
+ EL +V S + + Q+ LP + V
Sbjct: 235 DSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDV 294
Query: 525 SDVFQAVEEAKSRFTVFAWGLADTTLED---VFIKVARHAQAFEDLP 568
V + + +AD LE V ++ Q +P
Sbjct: 295 Q-VGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIP 340
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDM 319
E + ++L++ GE +G +G GK+T I++ I R TSG + G +I+ D
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINL---IPRFYDVTSGQILIDGHNIK-DF 408
Query: 320 DRIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--- 374
+G+ Q+++L+ T +E++L GR A + V E+ K N
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKENIL-LGRPT-----ATDEEVVEAAKMANAHDFIM 461
Query: 375 ---GG---VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
G ++ K SGG K+RLS+A + NP ++ +DE ++ LD
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 39/210 (18%)
Query: 222 EKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFG 281
EK + + +R + N+ YPGR E A+ ++L +P+G+
Sbjct: 327 EKDEGKRVIDRAT---------GDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVA 373
Query: 282 MLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWE 337
++G +G+GK+T S+ ITR G + G D+R + + + + Q L+
Sbjct: 374 LVGRSGSGKSTIASL---ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 338 TLTGREHLLFYGRLKNLKGPALTQA-VEESLKSVNL----------FHGGVADKQAGKYS 386
T ++ Y R + ++ +EE+ + + + S
Sbjct: 431 D-TVANNIA-YARTE-----EYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLS 482
Query: 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
GG ++R+++A +L+ + ++ +DE ++ LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG------MKRR 392
G + K + EE+ + + G ++ SGG + R
Sbjct: 13 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGK-ERPLTFLSGGERIALGLAFR 71
Query: 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME 444
L++++ L G ++ +DEP+ LD R L +++R + +IL +H E
Sbjct: 72 LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 311
Y G+ EK A++ +S ++P G+ ++G +G+GK+T ++ TR SG+ +
Sbjct: 351 YQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL---FTRFYDVDSGSICLD 403
Query: 312 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
G D+R + + + Q L+ T ++ Y +G + +E++ +
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIA-YAA----EGEYTREQIEQAARQA 457
Query: 371 NL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
+ + + SGG ++R+++A +L+ + V+ +DE ++ LD
Sbjct: 458 HAMEFIENMPQGLDTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 25/164 (15%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT 317
+ +K + ++ + G+ ++GP G+GKTT +++ + R G V G+DIR
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL---LMRFYDVDRGQILVDGIDIR- 420
Query: 318 DMDR--IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH- 374
+ R + +S+G+ Q+ +L+ T T +E+L YG A + ++E+ K + H
Sbjct: 421 KIKRSSLRSSIGIVLQDTILFST-TVKENLK-YGNPG-----ATDEEIKEAAKLTHSDHF 473
Query: 375 -----GG---VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE 410
G V S G ++ L++ + + NPK++ +DE
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE 517
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 386 SGGMKRRLSVAISL------IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIIL 438
SGG + L +A L G ++ +DEP+ LD R L +++R K+ +IL
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 439 TTHSMEEAEA 448
+H E +A
Sbjct: 310 VSHDEELKDA 319
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 36/201 (17%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMD 320
+ + G++L +P GE ++GPNGAGK+T ++ G G + G +I ++
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI-LELS 73
Query: 321 ---R----IYTSM-------GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
R ++ + GV + L L + + + V+++
Sbjct: 74 PDERARKGLFLAFQYPVEVPGV-TIANFLRLALQAK-------LGREVGVAEFWTKVKKA 125
Query: 367 LKSVNLFHGGVADKQAGKY-----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLD-PASR 420
L+ ++ + +Y SGG K+R + L+ P +DE +GLD A +
Sbjct: 126 LELLDW-----DESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 421 NNLWNVVKRAKQGRAIILTTH 441
V ++ TH
Sbjct: 181 VVARGVNAMRGPNFGALVITH 201
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 51/244 (20%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K + ++L + GE +GP+G GK+T + M+ G+ TSG
Sbjct: 7 QNVTKAWGEVV------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 309 YVQGLDIRTDM---DR----------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355
++ + D +R +Y + V E++ F +L K
Sbjct: 61 FIGEKRM-NDTPPAERGVGMVFQSYALYPHLSV-------------AENMSFGLKLAGAK 106
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI--SLIGNPKVVYMDEPST 413
+ Q V + + + L H + D++ SGG ++R VAI +L+ P V +DEP +
Sbjct: 107 KEVINQRVNQVAEVLQLAH--LLDRKPKALSGGQRQR--VAIGRTLVAEPSVFLLDEPLS 162
Query: 414 GLDPASRNNLWNVVKRA-------KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466
LD A R V R + GR +I TH EA L D++ + G + +G
Sbjct: 163 NLDAALR-----VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 467 PKEL 470
P EL
Sbjct: 218 PLEL 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.98 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.95 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.94 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.94 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.94 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.92 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.91 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.9 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.9 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.89 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.89 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.89 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.88 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.88 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.88 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.88 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.88 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.87 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.87 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.87 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.87 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.85 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.84 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.83 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.82 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.82 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.82 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.81 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.81 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.81 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.8 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.8 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.8 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.79 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.78 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.77 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.77 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.76 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.76 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.76 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.74 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.74 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.73 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.73 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.7 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.7 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.7 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.66 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.66 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.65 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.65 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.65 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.64 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.64 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.63 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.63 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.61 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.61 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.6 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.58 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.57 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.57 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.56 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.53 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.53 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.51 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.49 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.48 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.47 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.45 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.43 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.41 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.41 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.4 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.4 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.36 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.35 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.31 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.29 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.27 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.25 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.24 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.24 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.21 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.2 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.16 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.03 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.03 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.02 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.99 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.99 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.97 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.97 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.96 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.83 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.78 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.75 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.71 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.65 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.58 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.56 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.56 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.54 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.53 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.53 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.52 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.51 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.49 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.46 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.46 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.44 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.44 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.43 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.42 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.38 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.27 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.27 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.27 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.12 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.11 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.07 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.06 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.04 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 98.03 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.0 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.99 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.96 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.95 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.94 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.9 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.88 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.86 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.78 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.77 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.75 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.75 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.68 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.68 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.64 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.62 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.6 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.55 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.54 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.49 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.45 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.44 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.41 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.41 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.35 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.32 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.3 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.28 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.28 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.25 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.23 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.21 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.2 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.19 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.17 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.14 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.05 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.05 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.05 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.03 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.02 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.99 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.92 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.91 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.89 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.87 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.85 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.8 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.79 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.76 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.65 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.62 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.61 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.59 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.58 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.49 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.45 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.38 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.34 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.33 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.32 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.31 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.28 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.19 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.04 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.0 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.93 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.93 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.92 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.91 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.91 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.82 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.82 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.81 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.73 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.69 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.63 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.63 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.63 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.55 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.55 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.51 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.5 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.48 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.47 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.41 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.39 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.37 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.26 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.21 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.18 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.12 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.11 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.1 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.09 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.08 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.08 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.06 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.05 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.99 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.95 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.93 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.9 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.87 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.87 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.84 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.84 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.83 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.81 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.8 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.79 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.77 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.71 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.71 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.68 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.65 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.65 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.64 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.57 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.55 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.54 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.53 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.48 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.47 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.47 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.46 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.46 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.46 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.41 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.4 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.38 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 94.32 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.32 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.3 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.24 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.24 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.24 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.23 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.23 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.23 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.23 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.22 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.21 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.21 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.17 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.16 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.16 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.14 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.13 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.08 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.08 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.08 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.04 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.03 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.02 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 93.99 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.97 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 93.97 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 93.96 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 93.95 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 93.95 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 93.94 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 93.9 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.89 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.88 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.86 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 93.86 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 93.85 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 93.84 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 93.81 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 93.8 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 93.8 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 93.8 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 93.79 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.78 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 93.78 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.77 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.76 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 93.74 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 93.74 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 93.71 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 93.63 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.62 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 93.6 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 93.58 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 93.57 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 93.55 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 93.52 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 93.52 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.5 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.46 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.45 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.44 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.42 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 93.42 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.42 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.42 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.41 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.41 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.41 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.35 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 93.34 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.32 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.32 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.29 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.29 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.26 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 93.24 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.23 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.22 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.21 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.17 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.17 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.14 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.13 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.12 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.12 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.1 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.09 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.04 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.03 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.03 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.02 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.02 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.0 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 92.99 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 92.96 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 92.95 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 92.94 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.93 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 92.93 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 92.92 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 92.85 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 92.84 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 92.83 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.82 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 92.8 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 92.79 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 92.74 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 92.66 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 92.64 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 92.64 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 92.62 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 92.6 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 92.58 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 92.58 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 92.51 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 92.45 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.44 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.4 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.36 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 92.3 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 92.29 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.24 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 92.24 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.15 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 92.07 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.07 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 92.04 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 92.02 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 91.96 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.93 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.86 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 91.85 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 91.81 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 91.8 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 91.79 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 91.77 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 91.73 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 91.71 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.68 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 91.65 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 91.58 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.56 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 91.55 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.43 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.41 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 91.39 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 91.36 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.34 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 91.25 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.24 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.18 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 91.1 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 90.88 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 90.87 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 90.79 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 90.79 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 90.54 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 90.52 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 90.45 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.22 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 90.16 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 89.42 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 89.76 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 89.7 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 89.63 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 89.6 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 89.44 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 89.29 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 89.14 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 89.13 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 89.05 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 88.91 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=468.87 Aligned_cols=227 Identities=28% Similarity=0.439 Sum_probs=208.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 318 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---- 318 (568)
.++|+++||+|+|++.. ..+.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 22 ~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CceEEEEeEEEEeCCCC--CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 45899999999997421 235799999999999999999999999999999999999999999999999999642
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
..+.|++|||+||++.+++.+||+||+.+.....+.+.++.+++++++|+.+||. +.+++++++|||||||||+||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG--DKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--GGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHH
Confidence 2345789999999999999999999999988888877778888999999999996 48999999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+.+|++|||||||+||||.+++.++++|++++ .|+|||++||||+++..+||||++|++|++++.|+++++...
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999863 499999999999999999999999999999999999998654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-56 Score=462.90 Aligned_cols=221 Identities=25% Similarity=0.403 Sum_probs=203.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 4 ~l~i~~ls~~y~~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 6999999999973 679999999999999999999999999999999999999999999999999832 2233
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.+++|||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS--ELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999987777777777788999999999997 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|++|||||||+|||+..|+++++.+++. + .|+|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999988764 3 599999999999999999999999999999999999998764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-55 Score=441.91 Aligned_cols=224 Identities=30% Similarity=0.538 Sum_probs=205.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++|+++||+|.|++ +.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......
T Consensus 13 ~~~l~i~~l~~~y~~------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCeEEEEEEEEEECC------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 457999999999963 57999999999999999999999999999999999999999999999999986555567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+++.+||+||+.++...++.+.++.+++++++++.++|. +..++++++||||||||++|||||+.+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999999987666655555567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|+++||||||+||||.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++++.|+++++.+.+
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 237 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999864 6999999999999999999999999999999999999997654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-55 Score=441.52 Aligned_cols=222 Identities=24% Similarity=0.428 Sum_probs=202.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC---CcHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~---~~~~ 320 (568)
.+|+++||+|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. ....
T Consensus 23 ~~l~i~~l~~~y~~------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 23 QMIDVHQLKKSFGS------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96 (263)
T ss_dssp CSEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHH
T ss_pred heEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHH
Confidence 36999999999973 57999999999999999999999999999999999999999999999999984 2334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
..|+++||+||++.+++.+||+||+.++. ...+.+.++.+++++++++.++|. +..++++.+||||||||++|||||
T Consensus 97 ~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK--DKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999864 455555555667899999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++.+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999986 4699999999999999999999999999999999999998754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=447.47 Aligned_cols=222 Identities=26% Similarity=0.416 Sum_probs=202.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~ 320 (568)
++|+++||+|+|++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...
T Consensus 6 ~~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 47999999999974 2459999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+.|++|||+||++. .+..+||+||+.+.....+.+.++.+++++++++.++|. +..++++.+|||||||||+|||||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHHHHHHHHHHHH
Confidence 56789999999862 333689999999988777777777788999999999996 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|++|||||||+||||.+++.++++|++++ +|+|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999864 49999999999999999999999999999999999999865
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-55 Score=441.02 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=201.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
++|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccc
Confidence 36999999999973 579999999999999999999999999999999999999999999999999851
Q ss_pred -----c---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCCh
Q 008362 318 -----D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSG 387 (568)
Q Consensus 318 -----~---~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSg 387 (568)
. ....|+.+||+||++.+++.+||+||+.+.. ..++.+.++.+++++++++.+||. +. .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC--HHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhcCCcccCCH
Confidence 1 1345678999999999999999999999854 455555555667899999999996 47 8999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|||||++|||||+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 008362 467 PKELKAR 473 (568)
Q Consensus 467 ~~~l~~~ 473 (568)
++++.+.
T Consensus 237 ~~~~~~~ 243 (262)
T 1b0u_A 237 PEQVFGN 243 (262)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=461.78 Aligned_cols=220 Identities=27% Similarity=0.451 Sum_probs=205.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||+|+|++ +.||+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 3 ~l~~~~l~~~yg~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AER 75 (381)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGS
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHC
Confidence 5899999999973 679999999999999999999999999999999999999999999999999865322 347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.|||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999998888888888888999999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999986 44 99999999999999999999999999999999999998654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=431.85 Aligned_cols=223 Identities=23% Similarity=0.411 Sum_probs=193.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH---
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD--- 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~--- 320 (568)
+|+++||+|+|++.. ..+.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~y~~~~--~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCC--cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH
Confidence 488999999997421 124699999999999999999999999999999999999999999999999998642 21
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+. |+.+||+||++.+++.+||+||+.+....+ +.+.++..+++.++++.+++.+ ...++++.+||||||||++||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 22 356999999999999999999999876544 3445566778899999999963 235999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|||+.+|+++||||||+||||.+++.++++|+++ ++ |+|||++|||++.+ .+|||+++|++|+++..++++++.
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999986 34 99999999999966 689999999999999999887764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=426.18 Aligned_cols=214 Identities=22% Similarity=0.356 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H---
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M--- 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~--- 319 (568)
++++++||+|.|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~~l~~~~l~~~y~~------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (224)
T 2pcj_A 3 EILRAENIKKVIRG------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76 (224)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHH
T ss_pred cEEEEEeEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 36999999999973 5799999999999999999999999999999999999999999999999998542 2
Q ss_pred HHhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
...| +++||+||++.+++.+||+||+.+....++.+.++.+++++++++.++|. +..++++++||||||||++||||
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG--DKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 1233 67999999999999999999999877666655555667899999999997 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++ .+|||+++|++|++++.|+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999986 4699999999999998 7899999999999999885
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=452.42 Aligned_cols=222 Identities=28% Similarity=0.477 Sum_probs=204.6
Q ss_pred CCeEEEEeEEEEc-CCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 243 SHAIISDNLRKIY-PGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 243 ~~~i~~~~l~k~y-~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
..+|+++||+|+| + ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 12 ~~~l~~~~l~~~y~g------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P 84 (355)
T ss_dssp CEEEEEEEEEECCTT------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G
T ss_pred CceEEEEEEEEEEcC------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h
Confidence 3579999999999 5 256999999999999999999999999999999999999999999999999986422 3
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999987777776667778899999999996 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999986 33 99999999999999999999999999999999999998653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-54 Score=451.32 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=203.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PKDR 75 (362)
T ss_dssp CEEEEEEEEESSS------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-HhHC
Confidence 5899999999963 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID--KLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999987777766667778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+.+++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=452.84 Aligned_cols=220 Identities=29% Similarity=0.468 Sum_probs=201.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYR 75 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhC
Confidence 5899999999973 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID--NLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999977666655555567899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+.+++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=435.15 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=197.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
++++++||+|+|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 6 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 79 (257)
T 1g6h_A 6 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79 (257)
T ss_dssp EEEEEEEEEEEETT------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred cEEEEeeeEEEECC------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999973 5799999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh--cC-----------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRL--KN-----------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--~~-----------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.++.+||+||++.+++.+||+||+.+.... .+ .+.++.+++++++++.+||. +..++++++||||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG 157 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS--HLYDRKAGELSGG 157 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc--hhhCCCchhCCHH
Confidence 567899999999999999999999986543 23 23345567889999999996 4789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||++|||||+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HH
Q 008362 468 KE 469 (568)
Q Consensus 468 ~~ 469 (568)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-54 Score=426.87 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=196.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 321 (568)
++++++||+|+|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 5 ~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEEEECC------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 47999999999973 5799999999999999999999999999999999999999999999999998642 222
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+||+||+.++.. ...+.++.+++++++++.++ +. +..++++++||||||||++|||||+
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLK--ERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHH--TTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHh--hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 35669999999999999999999998642 22234455677889999995 86 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+||||.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999864 69999999999999999999999999999999999988753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=432.26 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=198.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.
T Consensus 10 ~~l~~~~l~~~~~~------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEEEeCC------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 57999999999973 679999999999999999999999999999999999999999999999999865 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC-
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG- 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~- 401 (568)
++.+||+||++.+++.+||+||+.+..... ..++.+++++++++.+++. +..++++++||||||||++|||||+.
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCL--ALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCS--TTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred hheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 778999999999988899999999875543 3345567899999999997 48899999999999999999999999
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 -----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|++|||||||+||||.+++.++++|++++ + |+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999863 3 689999999999999999999999999999999998874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-54 Score=451.56 Aligned_cols=221 Identities=26% Similarity=0.444 Sum_probs=203.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 319 (568)
+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 5899999999973 5799999999999999999999999999999999999999999999999988531 1
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
...+++|||+||++.+|+.+||+||+.|+.+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCCcccCCHHHHHHHHHHHHH
Confidence 223578999999999999999999999988777776667778899999999996 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999986 33 99999999999999999999999999999999999998654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-54 Score=452.42 Aligned_cols=221 Identities=27% Similarity=0.506 Sum_probs=202.9
Q ss_pred eEEEEeEEEEcCCCCCCCccc--eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----
Q 008362 245 AIISDNLRKIYPGRDGNPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~--al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---- 318 (568)
+|+++||+|+|++ ++ +|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 5899999999963 56 99999999999999999999999999999999999999999999999988531
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
....++++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+||||
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHH
Confidence 2234678999999999999999999999987776666666778899999999996 48999999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+.+|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999986 33 99999999999999999999999999999999999998653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-54 Score=450.74 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=195.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 11 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 83 (372)
T 1v43_A 11 EVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDR 83 (372)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGG
T ss_pred eEEEEEEEEEECC------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhC
Confidence 5999999999973 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999977666666666778899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 34 99999999999999999999999999999999999998653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=446.27 Aligned_cols=216 Identities=29% Similarity=0.510 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|+ ++ +++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ml~~~~l~~~y~------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWK------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH 72 (348)
T ss_dssp CEEEEEEEEECS------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHH
T ss_pred CEEEEEEEEEEC------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-hhhC
Confidence 478999999996 35 999999999999999999999999999999999999999999999999986422 3467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.+ ++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIE--HLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCT--TTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999998766654433 6789999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+.+++.|+++ + .|+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 3 499999999999999999999999999999999999998653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=425.59 Aligned_cols=215 Identities=22% Similarity=0.389 Sum_probs=193.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|++ +++|+||++++ |++||+||||||||||+|+|+|+++|++|+|.++|+++... ...++
T Consensus 1 ml~~~~l~~~y~~--------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN--------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERR 70 (240)
T ss_dssp CCEEEEEEEEETT--------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTS
T ss_pred CEEEEEEEEEeCC--------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhC
Confidence 3789999999962 59999999999 99999999999999999999999999999999999998542 23467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+++.+||+||+.+....++. ...+++++++++.+||. +..++++++||||||||++|||||+.+|+
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIA--HLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCT--TTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999986544332 22356789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+||||.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|+++++.+.
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=424.77 Aligned_cols=225 Identities=25% Similarity=0.383 Sum_probs=197.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|+... ...+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..|+
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT-PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTS-TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGG
T ss_pred EEEEEEEEEEecCCC-ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhhh
Confidence 589999999996210 0015699999999999999999999999999999999999999999999999998542 5678
Q ss_pred ceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC--CCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 325 SMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 325 ~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++||+||++ .+++.+||+||+.++.... .+.++.+++++++++.+||. + ..++++++||||||||++|||||+.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDS--FKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHH--HTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcc--cccCChhhCCHHHHHHHHHHHHHHc
Confidence 899999995 4666789999999865433 33334456789999999995 4 7899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..|+++++.+...
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHSC
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCcc
Confidence 99999999999999999999999999986 469999999999999999999999999999999999999876543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=426.25 Aligned_cols=220 Identities=24% Similarity=0.333 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--C-cHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--T-DMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~-~~~ 320 (568)
++|+++||+|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. . ...
T Consensus 20 ~~l~~~~l~~~y~~------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred ceEEEEeEEEEECC------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 47999999999973 57999999999999999999999999999999999999999999999999885 3 345
Q ss_pred HhhcceEEEcCCCCC--CCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 321 RIYTSMGVCPQEDLL--WETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l--~~~lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
..++++||+||++.+ .+.+||+||+.+... +.+...++..++++++++.+||. +..++++.+|||||||||+
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS--AKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHH
Confidence 567889999998754 335799999987431 12222344567789999999996 4789999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceE--EEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAI--ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~ti--il~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|| |++|||++++..+|||+++|++|++++.|+++++.
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999864 48999 99999999999999999999999999999998874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=415.95 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=193.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-H
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~ 319 (568)
.++|+++||+|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|+++... .
T Consensus 18 ~~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp --CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CceEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 457999999999963 5799999999999999999999999999999999999 479999999999998542 2
Q ss_pred HH-hhcceEEEcCCCCCCCCCCHHHHHHHHhh-h---cC---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHH
Q 008362 320 DR-IYTSMGVCPQEDLLWETLTGREHLLFYGR-L---KN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMK 390 (568)
Q Consensus 320 ~~-~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l---~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~k 390 (568)
.. .++.+||+||++.+++.+|+.||+.+... . .+ .+.++..++++++++.+||.+ +..++++. +||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-TTTTSBTTTTCCHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHH
Confidence 22 24569999999999999999999987531 1 12 233444568899999999952 36788887 5999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++|||+++++.+ |||+++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999874 589999999999999887 9999999999999999998
Q ss_pred HHHHh
Q 008362 469 ELKAR 473 (568)
Q Consensus 469 ~l~~~ 473 (568)
++...
T Consensus 251 ~~~~~ 255 (267)
T 2zu0_C 251 LVKQL 255 (267)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=412.92 Aligned_cols=219 Identities=21% Similarity=0.296 Sum_probs=188.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-HH-
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD- 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~~- 320 (568)
+++++||+|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++... ..
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWASIDG------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEEEECC------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 6999999999973 5799999999999999999999999999999999998 889999999999998642 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCC-CChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGK-YSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-LSgG~kqrl~la 396 (568)
..++.+||+||++.+++.+|++||+.+... ..+ .+.++..++++++++.+||.. +..++++++ ||||||||++||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE-SYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCG-GGGGSBTTCC----HHHHHHHH
T ss_pred HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHHHHHHHH
Confidence 234569999999999999999999988643 222 222344567889999999941 478999999 999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l 470 (568)
|||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++|||+++++.+ |||+++|++|++++.|+++..
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA 231 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHH
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999874 589999999999999988 599999999999999998743
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=414.03 Aligned_cols=221 Identities=20% Similarity=0.360 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+|+++||++.|++.. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....
T Consensus 15 ~~l~~~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEECCTTCT---TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEEEeCCCC---CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 4699999999997411 2569999999999999999999999999999999999999999999999999854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~-----~~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
|++|||+||++.+++ .||+||+.++.... .. ++. ...++++++.+ |+. +..++++.+||||||||++
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGG--SBCCGGGTTSCHHHHHHHH
T ss_pred hccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchh--hhhcCCcCCCCHHHHHHHH
Confidence 778999999999988 59999998754321 22 211 12345677877 675 4788999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|++|||||||+|||+.+++.++++|+++. +|+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 38999999999999975 99999999999999999999876
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 246 ~ 246 (271)
T 2ixe_A 246 R 246 (271)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=410.26 Aligned_cols=218 Identities=23% Similarity=0.435 Sum_probs=187.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
+.|+++||+|+|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 6 ~~~~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CceeEEEEEEEeCCC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999311 2579999999999999999999999999999999999999999999999999864 34556
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+.+||+||++.+++ .||+||+.++.. ... .++++++++.+++.+ ++..++++.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 788999999999987 599999987521 111 234566676666631 0234556789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++||||||+|||+.+++.++++|+++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987679999999999999875 999999999999999999998654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=406.95 Aligned_cols=207 Identities=23% Similarity=0.368 Sum_probs=186.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|.|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|. .++
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQ 66 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECS
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------Eec
Confidence 6999999999972 24699999999999999999999999999999999999999999998 246
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhc-C---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLK-N---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+||+||++.+++.+||+||+.+..... + ...++.+++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT--HLAKREFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh--HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999864322 2 12344467789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||+++++.+|||+++|++|+ ++.|+++++.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999986 44 8999999999999999999999999999 9999988873
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=416.52 Aligned_cols=217 Identities=21% Similarity=0.417 Sum_probs=189.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 52 ~~i~~~~vs~~y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CCEEEEEEEEESST-----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHH
T ss_pred CeEEEEEEEEEcCC-----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHH
Confidence 36999999999963 3579999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|||+||++.+|+. ||+||+.++.... . .+++.++++.+++.+ +...++++.+||||||||+
T Consensus 127 r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFND-TIADNIRYGRVTA--G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHTEEEECSSCCCCSE-EHHHHHHTTSTTC--C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred hcceEEEecCCccCcc-cHHHHHHhhcccC--C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 8999999999999964 9999999753221 1 123444444444421 1245677789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++|||||||+|||+.+++.+++.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999988778999999999999987 999999999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=403.82 Aligned_cols=209 Identities=20% Similarity=0.314 Sum_probs=189.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++||+|. ++|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. .....+
T Consensus 4 ~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~ 72 (249)
T 2qi9_C 4 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLA 72 (249)
T ss_dssp EEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHH
T ss_pred EEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHh
Confidence 6999999986 2899999999999999999999999999999999999999 999999999853 344567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+++||+||++.+++.+||+||+.+.. ..+.. +++++++++.+||. +..++++.+||||||||++|||||+.+|
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTR----TELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp HHEEEECSCCCCCTTCBHHHHHHTTC-SSTTC----HHHHHHHHHHTTCG--GGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred ceEEEECCCCccCCCCcHHHHHHHhh-ccCCc----HHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999998752 22211 56788999999996 4789999999999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 404 K-------VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 404 ~-------lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+ ++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++.
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9 99999999999999999999999986 46999999999999999999999999999999999998874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=407.42 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|++.. ..+.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++
T Consensus 1 ml~~~~l~~~y~~~~--~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG--YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YI 74 (263)
T ss_dssp CEEEEEEEEEEEEET--TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CT
T ss_pred CEEEEEEEEEeCCCC--ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hh
Confidence 478999999996310 01579999999999 9999999999999999999999999 9999999999988543 33 67
Q ss_pred ceE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 325 SMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 325 ~ig-~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
++| |+||++.+ .+|++||+.++..++. ..+++++++++.++|.. +..++++++||||||||++|||||+.+|
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLKALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHHHTTCCG-GGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 899 99999887 7899999998765542 12456889999999961 3789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCC-EEEEEECCEEEeecCHHHHHHh
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD-RLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~d-ri~il~~G~l~~~g~~~~l~~~ 473 (568)
+++||||||+|||+.+++.+++.|+++++ |||++|||++++..+|| |+++|++|++++.|+++++.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998765 99999999999999999 9999999999999999999754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-51 Score=406.26 Aligned_cols=215 Identities=20% Similarity=0.359 Sum_probs=187.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++||+|.|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....|
T Consensus 1 ml~~~~l~~~y~~-----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEEeCC-----CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 4789999999942 2569999999999999999999999999999999999999999999999999854 223457
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcc-----------cccCCCCChhHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA-----------DKQAGKYSGGMKRR 392 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~~LSgG~kqr 392 (568)
+++||+||++.+++. ||+||+.++.. .... +++++++++.+++.+ .. ++++.+||||||||
T Consensus 76 ~~i~~v~q~~~l~~~-tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~--~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 76 SQIGFVSQDSAIMAG-TIRENLTYGLE-GDYT----DEDLWQVLDLAFARS--FVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTCCEECCSSCCCCE-EHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTT--TTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred hhEEEEcCCCccccc-cHHHHHhhhcc-CCCC----HHHHHHHHHHhChHH--HHHhCccchhchhccCcCcCCHHHHHH
Confidence 789999999999884 99999987422 1111 345778888888853 33 34568999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998767999999999999986 599999999999999999999865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 227 ~ 227 (243)
T 1mv5_A 227 T 227 (243)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=396.92 Aligned_cols=202 Identities=18% Similarity=0.332 Sum_probs=180.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+|+++||+|+|+ + ++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..
T Consensus 8 ~~~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~ 76 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KV 76 (214)
T ss_dssp -CEEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GG
T ss_pred CceEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hh
Confidence 45899999999996 4 6999999999999999999999999999999999999999999999999885 25
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+++.+||+||+.++...++. ..+ +++++++++.+++.+ . ++++.+||||||||++|||||+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~--~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD--L-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC--T-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc--C-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999987665543 223 567899999999973 6 999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+|||++++ .|++
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999864 5899999999999999999998654 4554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=399.15 Aligned_cols=218 Identities=22% Similarity=0.438 Sum_probs=186.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+|+++||++.|++.. .+.+|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.++|+++.. ....+
T Consensus 16 ~~l~i~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT---NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCC---SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCC---cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHH
Confidence 3699999999997421 24699999999999999999999999999999999999987 8999999999854 34557
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+.+||+||++.+++ .||+||+.+.. . ... ++++.++++.+++.+ +...++++.+||||||||+
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~-~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 92 RSIIGIVPQDTILFN-ETIKYNILYGK-L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp HTTEEEECSSCCCCS-EEHHHHHHTTC-T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred hccEEEEcCCCcccc-cCHHHHHhccC-C-CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 788999999999987 59999998742 1 111 234566777776531 0113567889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS-AESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999988778999999999999874 999999999999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=419.43 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+|+|++. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .....
T Consensus 18 ~~i~~~~l~~~y~~~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG----GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESSSS----SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEecCC----CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 469999999999531 3579999999999999999999999999999999999998 99999999999865 44556
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKR 391 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-----------LSgG~kq 391 (568)
|+.+||+||++.+|+ +||+||+.++.. ..++++.++++.++|. ++.++++.+ |||||||
T Consensus 93 rr~ig~v~Q~~~lf~-~tv~enl~~~~~-------~~~~~v~~~l~~~~L~--~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS-GTFRKNLDPNAA-------HSDQEIWKVADEVGLR--SVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp HHTEEEESCCCCCCS-EEHHHHHCTTCC-------SCHHHHHHHHHHTTCH--HHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred hCCEEEEcCCcccCc-cCHHHHhhhccc-------cCHHHHHHHHHHhCCH--HHHhhcccccccccccccccCCHHHHH
Confidence 889999999999998 699999974321 1245678899999996 478889888 9999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
||+|||||+.+|+++||||||+|||+..++++++.|++..+++|+|++||+++.+ ..||||++|++|++++.|+++++.
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877789999999998765 569999999999999999999987
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
++
T Consensus 242 ~~ 243 (390)
T 3gd7_A 242 HY 243 (390)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=386.27 Aligned_cols=205 Identities=20% Similarity=0.344 Sum_probs=172.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++||+|.|++. ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEG----GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69 (229)
T ss_dssp EEEEEEEEEECSSTT----SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------
T ss_pred ceEEEEEEEEEeCCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------
Confidence 479999999999631 35799999999999999999999999999999999999999999999998
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||+||++.+++. ||+||+.++... .. .+.++.++.+++.+ ....++++.+||||||||++
T Consensus 70 -~i~~v~q~~~~~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 70 -RISFCSQFSWIMPG-TIKENIIFGVSY---DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp -CEEEECSSCCCCSB-CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred -EEEEEecCCcccCC-CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 38999999999886 999999874321 11 12233333333321 01234567899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+.+|+++||||||+|||+.+++.+++.+ ++..+|+|||++||+++++.. |||+++|++|++++.|+++++.++
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEEEEETTEEEEEECHHHHHTC
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999974 555568999999999999875 999999999999999999998653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=384.24 Aligned_cols=207 Identities=24% Similarity=0.417 Sum_probs=173.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------ 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66 (237)
T ss_dssp CEEEEEEEEESCTT----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------
T ss_pred eEEEEEEEEEeCCC----CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------
Confidence 58999999999731 25699999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHH---HHHHcCCCC---CCcccccCCCCChhHHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE---SLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~---~l~~~~L~~---~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.+||+||++.+ +.+|++||+.++... ..+. .+++.+ +.+.+++.+ ....++++.+||||||||++||||
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 38999999875 478999999875432 1111 122222 222333321 013578899999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVK---RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~---~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+.+|+++||||||+|||+.+++.+++.+. +.++|+|||++||++++++ .|||+++|++|++++.|+++++.+.
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999995 3456899999999999986 6999999999999999999998764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=420.78 Aligned_cols=219 Identities=19% Similarity=0.408 Sum_probs=191.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHH
Confidence 469999999999741 2569999999999999999999999999999999999999999999999999864 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.++.. .+. .+++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 416 RRHFALVSQNVHLFND-TIANNIAYAAE-GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred hcCeEEEcCCCccccc-cHHHHHhccCC-CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 8899999999999985 99999997531 111 2355777777777642 0123455689999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||+|||+.+++.+.+.|++..+|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877999999999999987 6999999999999999999999764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=421.72 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 338 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CCEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999999999999999999965 45677
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.+... .. .++++.++++..++.+ +...+++..+||||||||+
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRP--TA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCS--SC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCC--CC----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 8999999999999987 99999987421 11 1234555666655421 1234556679999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||||||+.+++.+.+.+++.++++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=420.43 Aligned_cols=219 Identities=21% Similarity=0.411 Sum_probs=191.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +.+..
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHH
Confidence 469999999999731 2569999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.++.. .+.+ +++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 416 RNQVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred HhhCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 8899999999999985 99999997531 1111 345677777777631 1234556789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||+|||+.+++.+++.+++..+|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999998777999999999999987 6999999999999999999999765
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=419.04 Aligned_cols=218 Identities=24% Similarity=0.443 Sum_probs=188.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 469999999999642 3579999999999999999999999999999999999999999999999999965 45677
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.+.... .+. +++.+.++..++.+ +...++++.+||||||||+
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGRED--ATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCCC--CCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 8999999999999976 999999874321 111 23333444333310 1356788899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||++||+.+++.+.+.+++..+|+|+|++||+++.+. .||||++|++|++++.|+++++.++
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998888999999999999986 7999999999999999999999765
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=421.60 Aligned_cols=217 Identities=22% Similarity=0.434 Sum_probs=187.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++ ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 353 ~~i~~~~v~~~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CCEEEEEEECCSSS-----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEECCC-----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 35999999999974 3569999999999999999999999999999999999999999999999999965 55678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.+... +.+. +++.++++.+++.+ +...+++..+||||||||+
T Consensus 428 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 428 RSSIGIVLQDTILFST-TVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp HHHEEEECTTCCCCSS-BHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred HhceEEEeCCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 8899999999999975 99999987421 1122 33555565555531 0122334479999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++||||||||||+.+++.+.+.+++..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999976 999999999999999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=374.19 Aligned_cols=199 Identities=21% Similarity=0.332 Sum_probs=156.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..++++||++.+ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~--------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99 (290)
T ss_dssp -----------C--------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------
T ss_pred ceEEEEEEEEcC--------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------
Confidence 469999999853 3599999999999999999999999999999999999999999999998
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||+||++.+++. |++||+. ... ... ..+.+.++.+++.+ ....++++.+||||||||++
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~ 169 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHH
Confidence 38999999999885 9999997 321 111 12333444444421 01234456899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.+++.+ ++.++|+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999999999999974 45556899999999999986 599999999999999999999854
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-44 Score=429.10 Aligned_cols=224 Identities=25% Similarity=0.501 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+.+ ++.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+++ +.+.+
T Consensus 1075 g~I~f~nVsf~Y~~~---~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER---PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CCEEEEEEEECCTTS---CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred CeEEEEEEEEeCCCC---CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence 369999999999753 24579999999999999999999999999999999999999999999999999976 67889
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||||||++.||+. |++||+.++..- .+..++++.++++..++.+ +........+||||||||+
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 9999999999999997 999999864211 1223456777888777631 0122334467999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+++.+.+.+.|++..+|+|+|+++|.++.+.. ||||++|++|++++.|++++|.++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999987
Q ss_pred cCC
Q 008362 474 YGG 476 (568)
Q Consensus 474 ~~~ 476 (568)
-|.
T Consensus 1306 ~g~ 1308 (1321)
T 4f4c_A 1306 KGA 1308 (1321)
T ss_dssp C--
T ss_pred CcH
Confidence 443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=414.95 Aligned_cols=220 Identities=28% Similarity=0.493 Sum_probs=188.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 386 g~i~~~~v~~~y~~~~---~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK---EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCEEEEEEEECCSSTT---SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCCC---CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHH
Confidence 3599999999997431 3579999999999999999999999999999999999999999999999999965 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-------~--~~~~~~~~~~LSgG~kqrl 393 (568)
|++||||||++.+|+. |++||+.++.. ..+. +++.++++..++. + +....++..+||||||||+
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri 535 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE--DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS--SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence 8899999999999987 99999998632 1122 2333333333321 0 1234567789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++|||||||+||+.+++.+.+.+++..+|+|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 536 aiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888789999999999999976 999999999999999999999765
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 615 ~ 615 (1284)
T 3g5u_A 615 K 615 (1284)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=416.49 Aligned_cols=222 Identities=21% Similarity=0.444 Sum_probs=188.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++||+++|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 1029 g~i~~~~v~~~y~~~~---~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CCEEEEEEEBCCSCGG---GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH
T ss_pred CcEEEEEEEEECCCCC---CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH
Confidence 3599999999997431 3469999999999999999999999999999999999999999999999999975 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+ .|++||+.+.......+. +++.+.++..++.+ +........+||||||||+
T Consensus 1106 r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv 1180 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180 (1284)
T ss_dssp TTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH
T ss_pred HhceEEECCCCcccc-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH
Confidence 899999999999887 599999987533222222 23444444444321 0122345578999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++|||||||+|||+.+++.+.+.|++..+|+|||++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888789999999999999865 999999999999999999999876
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 1260 ~ 1260 (1284)
T 3g5u_A 1260 K 1260 (1284)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=414.14 Aligned_cols=220 Identities=24% Similarity=0.448 Sum_probs=192.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+++ +++++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|+|++. +.+.+
T Consensus 414 g~I~~~nvsF~Y~~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR---PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCEEEEEEEECCSSS---TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CcEEEEEeeeeCCCC---CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHH
Confidence 359999999999753 24689999999999999999999999999999999999999999999999999976 67788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||||||++.||+. |++||+.++.. ...++++.++++..++.+ +.....+..+||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999987521 112345666666665421 1234456678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++.+.+.|.++.+|+|+|++||++..+. .||+|++|++|++++.|+.++|.++
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHh
Confidence 999999999999999999999999999999999999888999999999999886 5999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
-
T Consensus 643 ~ 643 (1321)
T 4f4c_A 643 Q 643 (1321)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=377.21 Aligned_cols=205 Identities=24% Similarity=0.312 Sum_probs=181.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|++|.|++ ..++++||++++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~~-------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------ 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS-------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------ 415 (607)
T ss_dssp CEEEEECCEEEECSS-------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------
T ss_pred ceEEEEeceEEEecc-------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------
Confidence 357999999999963 3799999999999999999999999999999999999999999975
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.++||+||+..+.+.+||.|++....... ....++++++++.+++. +..++++++|||||||||+|||||+.+
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGII--DLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCT--TTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 246999999988878899999887641110 01135678899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 472 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 472 (568)
|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++ |++...|+++++..
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999986 3599999999999999999999999986 88888999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=372.94 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=180.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|+++.|++ ..++++||+|++||++||+||||||||||+|+|+|+.+|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~~-------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------ 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS-------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------ 345 (538)
T ss_dssp CEEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------
T ss_pred CeEEEEeeEEEEECC-------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------
Confidence 357999999999963 3799999999999999999999999999999999999999999975
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
...+||+||+....+.+||.|++....... .. ..++++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASK-LN---SNFYKTELLKPLGII--DLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHHTTTTTTCG--GGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 246999999988778899999887541110 01 135678899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 472 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 472 (568)
|++|||||||+|||+.+++.++++|+++. +|+|||++|||++++..+||||++|++ |++...|+++++..
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999863 499999999999999999999999996 78888999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=369.34 Aligned_cols=206 Identities=23% Similarity=0.287 Sum_probs=177.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|++|.|++ ..+++.||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~~-------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD-------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---------- 329 (538)
T ss_dssp CEEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC----------
T ss_pred cceEEEcceEEEECC-------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------
Confidence 357999999999973 468888999999999999999999999999999999999999998765
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.++|+||+......+||+||+.+..... .. .....++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDA-LS--TSSWFFEEVTKRLNLH--RLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSST-TC--TTSHHHHHTTTTTTGG--GCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhc-cc--hhHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 35899999977667889999998742211 11 1234578899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELK 471 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~ 471 (568)
|++|||||||+|||+.+++.++++|+++. .|+|||++|||++++..+||||++|++ |+....+++..+.
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999863 589999999999999999999999986 5566666665543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=365.11 Aligned_cols=198 Identities=25% Similarity=0.344 Sum_probs=165.9
Q ss_pred eEEE--------EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--------
Q 008362 245 AIIS--------DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 308 (568)
Q Consensus 245 ~i~~--------~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-------- 308 (568)
+|++ +||+|+|++ ...+++|+| ++++||++||+||||||||||+|+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~ 156 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV-----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVI 156 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHH
T ss_pred eEEEecCCccccCCeEEEECC-----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhh
Confidence 5888 889999974 125999999 999999999999999999999999999999999996
Q ss_pred -EECCeeCCCcHH---HhhcceEEEcCCCCCCC---CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc
Q 008362 309 -YVQGLDIRTDMD---RIYTSMGVCPQEDLLWE---TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381 (568)
Q Consensus 309 -~i~G~~i~~~~~---~~r~~ig~~~Q~~~l~~---~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 381 (568)
.++|.++..... ..+..+++++|+..+.+ ..|++|++... . ..++++++++.+||. +..+++
T Consensus 157 ~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~--~~~~~~ 225 (607)
T 3bk7_A 157 RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELE--NVLDRE 225 (607)
T ss_dssp HHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCT--TGGGSB
T ss_pred heeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCC--chhCCC
Confidence 456665532111 12346889999743322 13999998631 1 123578899999997 478999
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 382 ~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
+++|||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+||||++|+++
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999986 46999999999999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=359.84 Aligned_cols=197 Identities=23% Similarity=0.309 Sum_probs=162.6
Q ss_pred EEE-EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE---------EECCeeC
Q 008362 246 IIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---------YVQGLDI 315 (568)
Q Consensus 246 i~~-~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i---------~i~G~~i 315 (568)
.++ +||+|+|++ ...+++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 21 ~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~ 94 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94 (538)
T ss_dssp ---CCCEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTH
T ss_pred hhHhcCcEEEECC-----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccH
Confidence 445 699999974 125899999 999999999999999999999999999999999995 3566554
Q ss_pred CCcHH---HhhcceEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 316 RTDMD---RIYTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 316 ~~~~~---~~r~~ig~~~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
..... ..+..+++++|+..+++. .|+.|++... +..++++++++.+|+. +..++++++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~--~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELE--NVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCT--TTTTSBGGGCCHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCC--hhhhCChhhCCHHH
Confidence 32111 123468999997544332 3899987531 1123578899999997 47899999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
||||+||+||+.+|++|||||||++||+.+++.++++|+++ ++|+|||++|||++++..+||||++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999986 46999999999999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=358.90 Aligned_cols=201 Identities=23% Similarity=0.303 Sum_probs=172.4
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~G-----ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+++++.|++ .+.+++|+||++++| |++||+||||||||||+|+|+|+.+|++|+. +. +
T Consensus 350 ~~~~~~y~~-----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~ 412 (608)
T 3j16_B 350 ASRAFSYPS-----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------K 412 (608)
T ss_dssp SSSCCEECC-----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------S
T ss_pred cceeEEecC-----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------C
Confidence 556777863 245899999999999 8899999999999999999999999999962 21 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
..++|+||+.......|++|++... .++.. ...+.++++++.++|. +.+++++.+|||||||||+|||||+.+|
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~--~~~~~~~~~l~~l~l~--~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKK--IRGQF--LNPQFQTDVVKPLRID--DIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHH--CSSTT--TSHHHHHHTHHHHTST--TTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEecccccccCCccHHHHHHHH--hhccc--ccHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 4699999997766667999987532 22211 1134567889999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 472 (568)
++|||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+||||++|++ |++...|+|+++..
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999986 3 599999999999999999999999996 89999999988865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=371.46 Aligned_cols=207 Identities=24% Similarity=0.342 Sum_probs=166.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++|+++.|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 669 ~~mL~v~nLs~~Y~g~----~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--------- 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGT----SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--------- 735 (986)
T ss_dssp SEEEEEEEEEECCTTC----SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT---------
T ss_pred CceEEEEeeEEEeCCC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc---------
Confidence 3479999999999642 256999999999999999999999999999999999999999999999862
Q ss_pred hcceEEEcCCCCC----CCCCCHHHHHHHHhh------------------------------------------------
Q 008362 323 YTSMGVCPQEDLL----WETLTGREHLLFYGR------------------------------------------------ 350 (568)
Q Consensus 323 r~~ig~~~Q~~~l----~~~lTv~e~l~~~~~------------------------------------------------ 350 (568)
.++||++|++.. ..+.|+.|++.+...
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 136777775421 123466665543110
Q ss_pred -----------------------------------------------------hcCCCchhHHHHHHHHHHHcCCCCCCc
Q 008362 351 -----------------------------------------------------LKNLKGPALTQAVEESLKSVNLFHGGV 377 (568)
Q Consensus 351 -----------------------------------------------------l~~~~~~~~~~~~~~~l~~~~L~~~~~ 377 (568)
..+......+++++++++.+||.+ +.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~-~~ 893 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP-EI 893 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH-HH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc-hh
Confidence 001011112456888999999962 23
Q ss_pred -ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 378 -ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 378 -~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
.++++++|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++. +.|||++|||++++..+|||+++|
T Consensus 894 ~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL 971 (986)
T 2iw3_A 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAV 971 (986)
T ss_dssp HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECC
T ss_pred hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEE
Confidence 58899999999999999999999999999999999999999999999998765 579999999999999999999999
Q ss_pred ECCEEEeecC
Q 008362 457 VDGSLQCIGN 466 (568)
Q Consensus 457 ~~G~l~~~g~ 466 (568)
++|+++..|+
T Consensus 972 ~~G~Iv~~G~ 981 (986)
T 2iw3_A 972 KDGRMTPSGH 981 (986)
T ss_dssp BTTBCCC---
T ss_pred ECCEEEEeCC
Confidence 9999987774
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=362.71 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=173.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..+...|++|.|++ +.+|+|+||++++||++||+||||||||||+|+|+| |+| +|.+... +
T Consensus 434 ~~L~~~~ls~~yg~------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~ 494 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----E 494 (986)
T ss_dssp CEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----T
T ss_pred ceeEEeeEEEEECC------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----c
Confidence 35777899999973 579999999999999999999999999999999995 543 5544321 1
Q ss_pred cceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
.+++|++|+. .+++.+|+.||+.+ ...+. +++++++++.+|+.. +..++++++||||||||++|||||+.+
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~-~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTD-EMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCH-HHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2478999984 67889999999975 22221 567889999999952 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 472 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~ 472 (568)
|++|||||||+|||+.+++.++++|++ +|+|||++|||++++..+|||+++|++|+++ ..|+++++.+
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999988 6999999999999999999999999999997 6899988753
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=360.29 Aligned_cols=204 Identities=20% Similarity=0.290 Sum_probs=142.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhCCCCCC-------ceEEEECCeeC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFI---------------------SMMIGITRTT-------SGTAYVQGLDI 315 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll---------------------~~l~Gl~~p~-------~G~i~i~G~~i 315 (568)
+++|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 9999999999 45566666554
Q ss_pred CCcHHHhhcceEEEcCCCC-------------------CCCCCCHHHHHHHHhhhcCCC--chhHH------HHHHHHHH
Q 008362 316 RTDMDRIYTSMGVCPQEDL-------------------LWETLTGREHLLFYGRLKNLK--GPALT------QAVEESLK 368 (568)
Q Consensus 316 ~~~~~~~r~~ig~~~Q~~~-------------------l~~~lTv~e~l~~~~~l~~~~--~~~~~------~~~~~~l~ 368 (568)
.. ..++.+|+++|... .++.+|++||+.++..+.... ..... .+..++++
T Consensus 111 ~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 111 SR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred hc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 32 12344555555432 346789999998754332111 00000 01123588
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHH
Q 008362 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE 445 (568)
Q Consensus 369 ~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e 445 (568)
.+||.+ ...++++.+|||||||||+|||||+.+|+ +|||||||+||||.+++.++++|+++ ++|+|||++|||+++
T Consensus 188 ~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 899963 34789999999999999999999999998 99999999999999999999999986 469999999999998
Q ss_pred HHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 446 AEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 446 ~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+.. |||+++| ++|++++.|+++++.+
T Consensus 267 ~~~-~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 267 MLA-ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHH-CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred Hhh-CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 874 9999999 8999999999998864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=335.61 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=156.1
Q ss_pred eEEEEe--------EEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--------
Q 008362 245 AIISDN--------LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 308 (568)
Q Consensus 245 ~i~~~~--------l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-------- 308 (568)
+|++.| ++++|+. +...+++++ .+++||++||+||||||||||+|+|+|+++|++|+|
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~-----~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~ 142 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSA-----NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQE 142 (608)
T ss_dssp CEEEEEESSSSSTTEEEECST-----TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHH
T ss_pred ceEEecCChhhcCCeEEEECC-----CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhh
Confidence 566655 4677763 234777777 689999999999999999999999999999999998
Q ss_pred ---EECCeeCCCcH-HHhhcce--EEEcCCCCC------CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCC
Q 008362 309 ---YVQGLDIRTDM-DRIYTSM--GVCPQEDLL------WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376 (568)
Q Consensus 309 ---~i~G~~i~~~~-~~~r~~i--g~~~Q~~~l------~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~ 376 (568)
.+.|.++.... ....+.+ .+.+|.... -+..++.+++... .++..++++++++.+||. +
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~~~~~~~~~~~l~~~gl~--~ 213 (608)
T 3j16_B 143 IIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-------MEKSPEDVKRYIKILQLE--N 213 (608)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-------CCSCHHHHHHHHHHHTCT--G
T ss_pred hhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-------hhhHHHHHHHHHHHcCCc--c
Confidence 33343322111 1112222 344554221 1223566655432 112245788999999996 4
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~i 455 (568)
..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~v 293 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999999999999974 599999999999999999999999
Q ss_pred EECCE
Q 008362 456 FVDGS 460 (568)
Q Consensus 456 l~~G~ 460 (568)
|.+|.
T Consensus 294 l~~~~ 298 (608)
T 3j16_B 294 IYGVP 298 (608)
T ss_dssp EESCT
T ss_pred EeCCc
Confidence 98764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=339.62 Aligned_cols=200 Identities=21% Similarity=0.354 Sum_probs=156.8
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCceEEEECCeeCCCcHH-
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------------GITRTTSGTAYVQGLDIRTDMD- 320 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------------------Gl~~p~~G~i~i~G~~i~~~~~- 320 (568)
+.+|+||||+|++||++||+||||||||||+++|. |+.++ +|.+.++|.++.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998753 44444 4689999887742110
Q ss_pred ---H-------------------h-------------------hcceEEEcCCCCCCC----------------------
Q 008362 321 ---R-------------------I-------------------YTSMGVCPQEDLLWE---------------------- 337 (568)
Q Consensus 321 ---~-------------------~-------------------r~~ig~~~Q~~~l~~---------------------- 337 (568)
. . ....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 0 011244444333322
Q ss_pred ----------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---C
Q 008362 338 ----------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---K 404 (568)
Q Consensus 338 ----------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~ 404 (568)
.+|++||+.+.... ...++..+.++.+++.. ...++++.+|||||||||+|||||+.+| +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~ 566 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 566 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC------HHHHHHHHHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh------hhHHHHHHHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCc
Confidence 47999999886432 12345667888999963 4578999999999999999999999887 5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+|||||||+||||.+++.++++|+++ ++|+|||++|||++++. .||||++| ++|++++.|+++++.+
T Consensus 567 llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999986 46999999999999985 59999999 8999999999999965
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=335.62 Aligned_cols=192 Identities=23% Similarity=0.268 Sum_probs=152.6
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEE-eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-----------EECCeeCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLAL-PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----------YVQGLDIR 316 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i-~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-----------~i~G~~i~ 316 (568)
++.+.+||. ..++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.++.
T Consensus 3 ~~~~~~~~~-------~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 3 GEVIHRYKV-------NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75 (538)
T ss_dssp CCEEEESST-------TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred CCCceecCC-------CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH
Confidence 356778974 2344444544 5999999999999999999999999999999998 67777663
Q ss_pred CcHHH-hh--cceEEEcCC----CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 317 TDMDR-IY--TSMGVCPQE----DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 317 ~~~~~-~r--~~ig~~~Q~----~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
..... .. ..+...+|. +.++. .|+.|++.-. +.+++++++++.+++. ...++++++|||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe 143 (538)
T 3ozx_A 76 NYFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI---------DERGKKDEVKELLNMT--NLWNKDANILSGGG 143 (538)
T ss_dssp HHHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH---------CCSSCHHHHHHHTTCG--GGTTSBGGGCCHHH
T ss_pred HHHHHHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc---------hhHHHHHHHHHHcCCc--hhhcCChhhCCHHH
Confidence 21111 11 223444444 23333 3788765421 1123567889999996 47899999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
||||+||+||+.+|++|||||||+|||+.+++.++++|+++++|+|||++||+++++..+||||.+|++|
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9999999999999999999999999999999999999999877999999999999999999999999865
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=325.44 Aligned_cols=212 Identities=24% Similarity=0.317 Sum_probs=164.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHH-HhCCC-------CC-----------
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM-MIGIT-------RT----------- 303 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~-l~Gl~-------~p----------- 303 (568)
...++++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTR-----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEE-----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeee-----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 34699999974 16999999999999999999999999999996 76543 23
Q ss_pred -------Cce-------EEEECCeeCCCcH-----------HHhhc---------ceEEEcCC-----------------
Q 008362 304 -------TSG-------TAYVQGLDIRTDM-----------DRIYT---------SMGVCPQE----------------- 332 (568)
Q Consensus 304 -------~~G-------~i~i~G~~i~~~~-----------~~~r~---------~ig~~~Q~----------------- 332 (568)
.+| .|.++|.++.... +.+|+ ..||.++.
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 467 6889988774211 12221 12332221
Q ss_pred -----CCCC------------------------C--------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 008362 333 -----DLLW------------------------E--------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375 (568)
Q Consensus 333 -----~~l~------------------------~--------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~ 375 (568)
..++ . .+|+.|++.++.. ....+++.++++.+||..
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~~~~~~~~~~L~~~gL~~- 721 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------ESAIFRALDTLREVGLGY- 721 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------SHHHHHHHHHHHHTTCTT-
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------chHHHHHHHHHHHcCCCc-
Confidence 1111 1 2455565555321 122346789999999963
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 376 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 376 ~~~~~~~~~LSgG~kqrl~la~Al~~~---p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
...++++.+|||||||||+||++|+.+ |+++||||||+|||+.+++.++++|+++ ++|.|||++|||++++ ..||
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD 800 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD 800 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 246899999999999999999999996 7999999999999999999999999986 5799999999999999 6799
Q ss_pred EEEEE------ECCEEEeecCHHHHHHh
Q 008362 452 RLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 452 ri~il------~~G~l~~~g~~~~l~~~ 473 (568)
||++| ++|++++.|+++++.+.
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 99999 79999999999998654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=323.17 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=166.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC-------CCCce---------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT-------RTTSG--------- 306 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~-------~p~~G--------- 306 (568)
..++++|+++ .+|+||||+|++||++||+|+||||||||+++|. |.+ .+..|
T Consensus 628 ~~L~v~~l~~-----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4688888851 2699999999999999999999999999999853 211 12333
Q ss_pred ----EEEECCeeCCC----cHH-------Hh---------hcceEEEcCCCCCC----------------------C---
Q 008362 307 ----TAYVQGLDIRT----DMD-------RI---------YTSMGVCPQEDLLW----------------------E--- 337 (568)
Q Consensus 307 ----~i~i~G~~i~~----~~~-------~~---------r~~ig~~~Q~~~l~----------------------~--- 337 (568)
.|.++|.++.. ... .+ .+.+||+||...+. +
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 47888877632 110 11 13468888854321 0
Q ss_pred -----------------------------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 338 -----------------------------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 338 -----------------------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.+|+.|++.++... .. .++..++++.+||.. ...++++.+||||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-----~~-~~~~~~~L~~~gL~~-~~l~~~~~~LSGG 849 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-----PK-IKRKLETLYDVGLGY-MKLGQPATTLSGG 849 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-----HH-HHHHHHHHHHTTCSS-SBTTCCGGGCCHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-----hh-HHHHHHHHHHcCCCc-ccccCchhhCCHH
Confidence 46888888875432 11 234578999999963 3678999999999
Q ss_pred HHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------EC
Q 008362 389 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 458 (568)
Q Consensus 389 ~kqrl~la~Al~~~p---~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~ 458 (568)
|||||+||+||+.+| +++||||||+|||+.+++.++++|+++ ++|.|||++|||++++. .||||++| ++
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCC
Confidence 999999999999865 999999999999999999999999986 46999999999999985 79999999 78
Q ss_pred CEEEeecCHHHHHHh
Q 008362 459 GSLQCIGNPKELKAR 473 (568)
Q Consensus 459 G~l~~~g~~~~l~~~ 473 (568)
|++++.|+++++.+.
T Consensus 929 G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEV 943 (972)
T ss_dssp CSEEEEESHHHHHTC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999998753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=319.73 Aligned_cols=201 Identities=21% Similarity=0.337 Sum_probs=160.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHH---------HHHhCCCCCCc------e------EEEECCeeCCCc----H
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFI---------SMMIGITRTTS------G------TAYVQGLDIRTD----M 319 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll---------~~l~Gl~~p~~------G------~i~i~G~~i~~~----~ 319 (568)
.+|+||||+|++||++||+||||||||||+ +++.|...+.. | .+.+++.++... .
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 45555544433 2 244444443210 0
Q ss_pred -------HH-------------------------------hhcceEEEcCCCCCCC------------------------
Q 008362 320 -------DR-------------------------------IYTSMGVCPQEDLLWE------------------------ 337 (568)
Q Consensus 320 -------~~-------------------------------~r~~ig~~~Q~~~l~~------------------------ 337 (568)
+. ..+..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 00 0123577877766654
Q ss_pred --------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---CEE
Q 008362 338 --------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVV 406 (568)
Q Consensus 338 --------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~ll 406 (568)
.+|+.|++.|+... ....++.++|+.+||.. ...++++.+|||||||||+|||||+.+| +++
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred cCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 37889999886432 12356778999999963 3568999999999999999999999875 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
||||||+|||+.+++.++++|+++ ++|.|||++|||++++.. ||||++| ++|++++.|+++++.+.
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999999999999986 469999999999999875 9999999 89999999999999764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-36 Score=328.82 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=165.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-E-EEECCeeCCCcHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-T-AYVQGLDIRTDMD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~-i~i~G~~i~~~~~ 320 (568)
.++++++||+|.|+ ++||++++||+++|+||||||||||+|+|+|+.+|++| + |+++| +
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~------ 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D------ 176 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C------
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C------
Confidence 34688899998883 68999999999999999999999999999999999999 9 99998 2
Q ss_pred HhhcceEEEcCCCC---CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDL---LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~---l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.++.+||+||+.. +.+.+|++||+ +.... ++.. ..+++.++++.+|+.+ ..+ +.+|||||||||++|
T Consensus 177 -~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~--~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 177 -PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLER--INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp -TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSS--GGG--CHHHHHHHHHHHHHH
T ss_pred -ccCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCc--ccc--hhhhhHHHHHHHHHH
Confidence 3678999999984 44567999998 54432 2211 1234566788899963 444 889999999999999
Q ss_pred HH--HcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH------HHHHhCCE-----EEEEE-
Q 008362 397 IS--LIGNPKV----VYMDE-PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME------EAEALCDR-----LGIFV- 457 (568)
Q Consensus 397 ~A--l~~~p~l----llLDE-PtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~------e~~~l~dr-----i~il~- 457 (568)
|| |+.+|++ +|||| ||+|||+. ++.+.+++++. ++|+|++||+.+ +++.+||| |++|+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 99 9999999 99999 99999999 77777776654 788999999988 88899999 99999
Q ss_pred CCEEEeecCHHHHH
Q 008362 458 DGSLQCIGNPKELK 471 (568)
Q Consensus 458 ~G~l~~~g~~~~l~ 471 (568)
+|+++ .|+++++.
T Consensus 325 ~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 325 LDGVS-AVDDVYKR 337 (460)
T ss_dssp CTTCC-CCCHHHHH
T ss_pred CCcEE-ECCHHHHh
Confidence 99999 99998774
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=284.81 Aligned_cols=197 Identities=17% Similarity=0.213 Sum_probs=150.9
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--------------------------------------CCce
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--------------------------------------TTSG 306 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--------------------------------------p~~G 306 (568)
.+++++||++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999977664 4578
Q ss_pred EEEECCeeCCC-cHHHhhc-ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------------------C-------
Q 008362 307 TAYVQGLDIRT-DMDRIYT-SMGVCPQEDLLWETLTGREHLLFYGRLKNL----------------------K------- 355 (568)
Q Consensus 307 ~i~i~G~~i~~-~~~~~r~-~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~----------------------~------- 355 (568)
+++++|+++.. ....+.+ .+++++|++.++.. +..++..+.-..... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999864 2334444 48999999877653 565555543221100 0
Q ss_pred -------------------------------chhHHHHHHHHHHHcCCCCCCc---------------------cc----
Q 008362 356 -------------------------------GPALTQAVEESLKSVNLFHGGV---------------------AD---- 379 (568)
Q Consensus 356 -------------------------------~~~~~~~~~~~l~~~~L~~~~~---------------------~~---- 379 (568)
.+...+.+.+.++.+++..... ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0112234555666666542000 00
Q ss_pred ---ccCCC-CChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE
Q 008362 380 ---KQAGK-YSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 453 (568)
Q Consensus 380 ---~~~~~-LSgG~kqrl~la~Al~~~p--~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri 453 (568)
++++. ||||||||++||++|+.+| ++|||||||+|||+..++.+.+.|+++.+|+|||++||+++.+. .|||+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeE
Confidence 33333 5999999999999999999 99999999999999999999999999878999999999998775 79999
Q ss_pred EEE----ECCEEEee
Q 008362 454 GIF----VDGSLQCI 464 (568)
Q Consensus 454 ~il----~~G~l~~~ 464 (568)
++| ++|+++..
T Consensus 366 ~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 366 YKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEeccCCceEEE
Confidence 999 99988654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-32 Score=267.17 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=105.6
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|. +.++.......++.+||+||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecCCchhhhcceEEecCCH--------H
Confidence 36799996 89999999999999999999999999 99999994 3333222223567899999986 4
Q ss_pred HHH-HHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 008362 343 EHL-LFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417 (568)
Q Consensus 343 e~l-~~~----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~ 417 (568)
||+ .+. ..+..... .++++++++. ++ |||||++|||||+.+|+++||||||+|
T Consensus 77 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl---------------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI---------------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS---------------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC---------------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 444 221 11221111 2345555554 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q 008362 418 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 418 ~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~ 448 (568)
+++.++++|+++++|+||| +|||+++++.
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 8999999998875689999 9999998764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=255.33 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=78.0
Q ss_pred cccCCCCChhHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 379 DKQAGKYSGGMKRRLSVAISLI------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
++++.+||||||||++||+||+ ++|+++||||||+||||.+++.++++|+++ ++|+|||++||++++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 899999999999999999999999999986 469999999999998 56799
Q ss_pred EEEEEECCEEEe
Q 008362 452 RLGIFVDGSLQC 463 (568)
Q Consensus 452 ri~il~~G~l~~ 463 (568)
|+++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=247.89 Aligned_cols=190 Identities=18% Similarity=0.208 Sum_probs=129.9
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----------------------------------------------
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----------------------------------------------- 301 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~----------------------------------------------- 301 (568)
++++++.+| +++|+|||||||||++++|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 568899999 99999999999999999999543
Q ss_pred ---CCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------h----cC-CCchhHH----
Q 008362 302 ---RTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR--------L----KN-LKGPALT---- 360 (568)
Q Consensus 302 ---~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------l----~~-~~~~~~~---- 360 (568)
++.+|.++++|.++.. +.....+.+|+.||+..+...-++.+++..... . .. ...++..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3345788999988742 234455567877776554422223332211000 0 00 0000011
Q ss_pred -----------------HHHHHHHHHcCCCC----CCcccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Q 008362 361 -----------------QAVEESLKSVNLFH----GGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGL 415 (568)
Q Consensus 361 -----------------~~~~~~l~~~~L~~----~~~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgL 415 (568)
.+..+.++. ++.. .+..++++.+||||||||++||+||+ .+|+++||||||++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 111222322 2210 12467788999999999999999997 789999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE--EEEECCEE
Q 008362 416 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL--GIFVDGSL 461 (568)
Q Consensus 416 D~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri--~il~~G~l 461 (568)
||..++.+++++++..+|++||++||+++ +..+||++ ++|.+|+-
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEeCCEE
Confidence 99999999999998877899999999964 56689987 77877754
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-31 Score=279.02 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=143.6
Q ss_pred cceeeeeEEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 264 KVAVNGLSLALPSGE--------------------CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 264 ~~al~~isl~i~~Ge--------------------i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+.+++++|+++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.++. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 579999999999999 99999999999999999999999999999999997652 1
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG--~kqrl~la~Al~~ 401 (568)
.++++|++ .++.+|+.|++.+.. . +.+++++++.+++.+ . +..+. |||| ||||+.+|+||+.
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~--~-~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYE--Y-DFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGG--C-SEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCc--c-CCeEE-eCCCCccHHHHHHHHHHHh
Confidence 27899985 577889999875431 1 134678899999852 3 34444 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cC----CceEEEEcCCHHH--HHHhCCEEE-EEEC
Q 008362 402 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQ----GRAIILTTHSMEE--AEALCDRLG-IFVD 458 (568)
Q Consensus 402 ----------~p~lllLDEPtsgLD~~~r~~i~~~l~~~------~~----g~tiil~tH~~~e--~~~l~dri~-il~~ 458 (568)
+|++++|||||+||||..++++++.+++. +. ..+|+++||++++ ++.+||++. .|..
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 99999999999999999999999999875 22 3679999999998 999999984 4433
Q ss_pred C
Q 008362 459 G 459 (568)
Q Consensus 459 G 459 (568)
|
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-28 Score=229.58 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=104.1
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC-CCCCHHHHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTGREHLLF 347 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~-~~lTv~e~l~~ 347 (568)
|+||++++||+++|+||||||||||+|++.+ |...++ .+.++ |+++|++.-. ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-------~d~~~---g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-------SDFCR---GLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-------HHHHH---HHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-------cHHHH---HHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 211111 22232 6777764210 0001111111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH---------
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA--------- 418 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~--------- 418 (568)
..... ....+.. .........|||||||++||+|++.+|++++|||||+|||+.
T Consensus 64 -------------~~~~~-~~~~g~~---~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 64 -------------YIVSK-RLQLGKL---TVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp -------------HHHHH-HHHTTCC---EEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred -------------HHHHH-HHhCCCe---EEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 11222 2234543 222344566999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 419 -------SRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 419 -------~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
.++.+++.++++ ++|.|+|++|||+++++.
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 668889988775 459999999999999986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-31 Score=256.65 Aligned_cols=176 Identities=11% Similarity=0.071 Sum_probs=128.7
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
.+.+++| .++++||+++|+||||||||||+|+|+|+++. +.+++..... .....++.+||+||++.+++.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3568888 79999999999999999999999999999863 4444322111 112235779999999888888888
Q ss_pred HHHHHHH----h--hhcCCCchhHHHHHHHH------HHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 008362 342 REHLLFY----G--RLKNLKGPALTQAVEES------LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409 (568)
Q Consensus 342 ~e~l~~~----~--~l~~~~~~~~~~~~~~~------l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLD 409 (568)
.+++..+ . ..++.+.++.++++++. ++.+|+. +.+++++++|| ||+.+|++++||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR--AIKKTMPEAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH--HHHHHCTTSEE-----------EEEECSCHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH--HHHHhcCCcEE-----------EEEECCCHHHHH
Confidence 8876432 2 33344444555666665 6666764 36788888898 999999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 410 EPSTGL----DPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 410 EPtsgL----D~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
|||+|+ |+..++++++++++++ .|.|+|++|||++++..+||||++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999998 8889999999998863 48999999999999999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-28 Score=231.33 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 357 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~ 357 (568)
.++|+||||||||||+|+|+|++. +.++|.+..... ...++++||++|+. ++.+++ .+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~--~~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI--FSSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE--EEET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH--HHhh------
Confidence 689999999999999999999985 566776542211 13467899999975 222332 1111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 008362 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 358 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A-----l~~~p~lllLDE--PtsgLD~~~r~~i~~~l~~~ 430 (568)
+....+..++++.+||||||||+++|+| ++.+|++++||| ||+++|+..++.+++.+++
T Consensus 63 -------------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~- 128 (178)
T 1ye8_A 63 -------------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD- 128 (178)
T ss_dssp -------------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-
T ss_pred -------------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-
Confidence 1111125788899999999999999996 999999999999 9999999999999998865
Q ss_pred cCCceEEEEc---CCHHHHHHhCCEEEEEECCEEEe
Q 008362 431 KQGRAIILTT---HSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 431 ~~g~tiil~t---H~~~e~~~l~dri~il~~G~l~~ 463 (568)
.+.|+|++| |++++++.+||| .+|++..
T Consensus 129 -~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 -PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp -TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred -CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 467788887 599999999998 5567665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-27 Score=243.08 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=143.0
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHh--hcceEEEcCCCC-CCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI--YTSMGVCPQEDL-LWE 337 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~--r~~ig~~~Q~~~-l~~ 337 (568)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+ +..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 456789999999999999999999999999999999999999999999986421 122 457999999988 889
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL 415 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgL 415 (568)
.+|++|++.+... ++.. ..+++.+|+. +..++++.+|| |||+++|||++.+|+ +++|| ||+|+
T Consensus 169 ~~~v~e~l~~~~~-~~~d--------~~lldt~gl~--~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD--------VVLCDTSGRL--HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS--------EEEECCCCCS--SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHHH-cCCc--------chHHhcCCCC--cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999999987532 2211 1356678886 36788899999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHh--cCCceEEEEcC---------CHHHHHHhCCEEEEEECCEE
Q 008362 416 DPASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 416 D~~~r~~i~~~l~~~--~~g~tiil~tH---------~~~e~~~l~dri~il~~G~l 461 (568)
|+..+. ++. ..|.|+|++|| .++.+...+++|..+..|+.
T Consensus 234 D~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 998652 333 34899999999 66777788889999999964
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-28 Score=260.33 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=159.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe---eCCCc--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTD-- 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~---~i~~~-- 318 (568)
++++++|+++.|+. ...||+++ |++.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..-
T Consensus 130 ~~l~~~~v~~~~~t-----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCSBCCC-----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccceecCC-----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 46888999999963 25699999 999999999999999999999999999999999999999998 45321
Q ss_pred ----HHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 319 ----MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 319 ----~~~~r~~ig~~~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
....++.++|++|+ ..+++.+|+.+|+.+.+...+... +.+. ...+ .+..||+|| ||+
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-----------~~v~----~~ld-~l~~lS~g~-qrv 266 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-----------QHVL----LIMD-SLTRYAMAQ-REI 266 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-----------CEEE----EEEE-CHHHHHHHH-HHH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-----------CCHH----HHHH-hHHHHHHHH-HHH
Confidence 23467889999995 556778899999987654321100 0110 1122 267799999 999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----Cc-----eEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-----GR-----AIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~-----g~-----tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++| +++|++ |+||||..+..+.+++.++.+ |+ ||+++|||++ +.+||++++|.+|+++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 999 889988 999999999999999988632 64 9999999999 67899999999999999
Q ss_pred ecCHHHHHHh
Q 008362 464 IGNPKELKAR 473 (568)
Q Consensus 464 ~g~~~~l~~~ 473 (568)
.|++.++...
T Consensus 336 ~~~~~~~~~~ 345 (438)
T 2dpy_A 336 SRRLAEAGHY 345 (438)
T ss_dssp CHHHHHTTCS
T ss_pred eCCHHHccCC
Confidence 9999887543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-29 Score=259.36 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=132.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||++.|+ +.+|+++||+|++||+++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~-------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF-------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------------- 155 (305)
T ss_dssp HHHHTTCCHHHH-------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------------
T ss_pred eEEEEEEEEEcC-------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------------
Confidence 367889999995 36999999999999999999999999999999999998 89883
Q ss_pred ceEEEcCCCCCCCCCCHHH-HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 325 SMGVCPQEDLLWETLTGRE-HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e-~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+|++|++.+|+. |++| |+.+... .+ +.+.+.++.+ |.+ ..+ ..+|||||||| |||++.+|
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~--gld--g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRN--ALD--GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTG--GGG--TCCEECCCSSC---CCCEECCC
T ss_pred --EEecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHc--cCC--ccCcCHHHHHH---HHHHhCCC
Confidence 466788877774 7776 7665311 11 1345556654 432 334 78999999999 99999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+||| |++||+.+++.+.. .||+++.+ ..|||| +|++|++++.|++++++..|
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CEEE----EESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 9999 99999999988862 28998875 579999 99999999999999995443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-25 Score=235.95 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=142.7
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHh--hcceEEEcCCCC-CCCCC
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI--YTSMGVCPQEDL-LWETL 339 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~--r~~ig~~~Q~~~-l~~~l 339 (568)
+.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+ |..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 5688999999999999999999999999999999999999999999985421 122 457999999988 88889
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDP 417 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgLD~ 417 (568)
|++|++.+... ++.. ..+++.+|+.+ ..++++.+|| |||++||||++.+|+ +++|| ||+|+|+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~--~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLH--TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSS--CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCCh--hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 99999987532 2211 13566788863 6788899999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcC---------CHHHHHHhCCEEEEEECCEE
Q 008362 418 ASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 418 ~~r~~i~~~l~~~--~~g~tiil~tH---------~~~e~~~l~dri~il~~G~l 461 (568)
..+. ++. ..|.|+|++|| .+..+...++.|..+..|+.
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 8653 232 34899999999 46677778889999988863
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-26 Score=241.09 Aligned_cols=196 Identities=17% Similarity=0.260 Sum_probs=148.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
+++++++++|.|+. ...|++++ |+|.+||++||+||||||||||+++|+|+.+|+.|.+.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t-----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA 117 (347)
T ss_dssp CSTTCCCCCSEECC-----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT
T ss_pred CCeeecccceecCC-----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH
Confidence 46888999999973 25799999 9999999999999999999999999999999999999999976311
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
.....++.+++++|.+. +..+++...... ..+.+.+...+-. --..-+.+.+||+|| ||+++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~-vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKN-VLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp TSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCE-EEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhcccc-HHHHHhhHHHHHHHH-HHHHH
Confidence 11124456888888642 333443321100 0111111111110 000115678999999 99999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~---~g~-----tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
| +++|++ |+|+||..+..++++++++. +|. ||+++||||+ +.+||++.+|.+|+++..+++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCH
Confidence 9 688887 99999999999999999863 377 9999999999 678999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++..
T Consensus 251 ~~~~~ 255 (347)
T 2obl_A 251 AEENH 255 (347)
T ss_dssp HTTTC
T ss_pred HHcCC
Confidence 88753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-28 Score=238.76 Aligned_cols=177 Identities=8% Similarity=0.064 Sum_probs=123.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHhhcceEEEcCCCCCCCCCCH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.+. ....++.++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99999 8776432 12245789999999876654431
Q ss_pred -HHHHH---HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH-----HHHHcCCCCEEEEeCCC
Q 008362 342 -REHLL---FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV-----AISLIGNPKVVYMDEPS 412 (568)
Q Consensus 342 -~e~l~---~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l-----a~Al~~~p~lllLDEPt 412 (568)
.+++. +....+|.+ ...++++++...+. ..+ .+||||||||+++ |++++.+|++++|||||
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~---il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC---LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE---EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE---EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 11211 112222222 23466777665431 223 5799999999999 89999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--------CCceEEEEcCCHHHHHHhCCEEE
Q 008362 413 TGLDPASRNNLWNVVKRAK--------QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 413 sgLD~~~r~~i~~~l~~~~--------~g~tiil~tH~~~e~~~l~dri~ 454 (568)
+++|..+...+.+.+.+.. ++...|+++|+++++...+++++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9999998888888876542 45677888888888888777664
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=216.69 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=79.1
Q ss_pred cccCC-CCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q 008362 379 DKQAG-KYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 379 ~~~~~-~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~ 448 (568)
+++++ .||||||||++||++|+ ++|+++||||||++||+..++.+++.+.+.. .|+|++|| +++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc---
Confidence 55677 79999999999999999 9999999999999999999999999998865 79999999 454
Q ss_pred hCCEEEEEECCEEEeecCHHHH
Q 008362 449 LCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 449 l~dri~il~~G~l~~~g~~~~l 470 (568)
.||++++|++|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999999876
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-26 Score=230.37 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
.+||+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.+||+||++.+++.+||.||+.++....+. +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCT---T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccH---H
Confidence 4789999999999999999999999999999999987432 2357899999999999999999999887654431 1
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 438 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil 438 (568)
..+.+.+.++ . .+.++.+.+||||||||+++|||++. +++||||++||||.. .++++++++..+||+
T Consensus 79 ~~~~i~~~~~----~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~ 145 (270)
T 3sop_A 79 CWEPIEKYIN----E--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIP 145 (270)
T ss_dssp CSHHHHHHHH----H--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH----H--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEE
Confidence 1233444443 1 35678888999999999999999885 999999999999987 334444433388888
Q ss_pred EcCCHHH
Q 008362 439 TTHSMEE 445 (568)
Q Consensus 439 ~tH~~~e 445 (568)
+.|..+.
T Consensus 146 Vi~K~D~ 152 (270)
T 3sop_A 146 VIAKADT 152 (270)
T ss_dssp EETTGGG
T ss_pred EEecccc
Confidence 8887653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-27 Score=257.77 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=132.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEE-EEeCCcEEEEEcCCCCcHHHHHHH--HhCCCCCCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISM--MIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl-~i~~Gei~~LlG~NGaGKTTll~~--l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
+++.+++.+..+ ..++|+++|+ ++++||+++|+||||||||||+++ ++|+.+|++|.|+++|++......+
T Consensus 12 ~~~~~~~~~~~~------g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~ 85 (525)
T 1tf7_A 12 NSEHQAIAKMRT------MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIK 85 (525)
T ss_dssp --CCSSCCEECC------CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred CccccccccccC------CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHH
Confidence 455566655543 3579999999 999999999999999999999999 7899999999999999885333344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.+|+++|++...+ ++.+ ..... .+ +..++++.+++. +..++.+.+||||
T Consensus 86 ~~~~~g~~~q~~~~~~------~l~~-~~~~~--~~----~~~~~l~~~~l~--~~~~~~~~~LS~g------------- 137 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEG------KLFI-LDASP--DP----EGQEVVGGFDLS--ALIERINYAIQKY------------- 137 (525)
T ss_dssp HHGGGTCCHHHHHHTT------SEEE-EECCC--CS----SCCSCCSSHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHcCCChHHhhccC------cEEE-EecCc--cc----chhhhhcccCHH--HHHHHHHHHHHHc-------------
Confidence 5678999999754221 1111 00000 00 011223333442 2445556666665
Q ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH---------HHHhCCEEEEEECC
Q 008362 402 NPKVVYMDEPST-----GLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE---------AEALCDRLGIFVDG 459 (568)
Q Consensus 402 ~p~lllLDEPts-----gLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e---------~~~l~dri~il~~G 459 (568)
+|++++|||||+ ++|+..++.+++++++++ +|+|||++||++++ ++.+||||++|++|
T Consensus 138 ~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 138 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 588999999998 569999999999999874 59999999999998 46779999999983
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-24 Score=218.44 Aligned_cols=183 Identities=16% Similarity=0.114 Sum_probs=129.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+.. ..++++++..+.|... ++..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCC----hhhc
Confidence 3589999999999999999999999999999999999999888 7766554432 3344445555554432 2233
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHHcCCCCEEEEeCCCC---C---C
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISLIGNPKVVYMDEPST---G---L 415 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~-kqrl~la~Al~~~p~lllLDEPts---g---L 415 (568)
+++... .+ +.++..+.++++++..++ .....+.++|.++ +||+. |+++..+|+++++||||+ + +
T Consensus 96 ~~l~~~-~~---~~~~~~~~~~~~l~~~~l----~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 96 DSLKRE-II---ENGKFDQWFDELFGNDTF----HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-HH---HHTHHHHHHHHHHSSSCE----EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred cccccC-CC---CHHHHHHHHHHHhccCCE----EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 445432 11 223334455555554444 2334456789998 66666 999999999999999999 5 5
Q ss_pred CH-HHHHHHHHHHHHh-cC-CceEEEEcCCH--H--------------------HHHHhCCEEEEEECCEE
Q 008362 416 DP-ASRNNLWNVVKRA-KQ-GRAIILTTHSM--E--------------------EAEALCDRLGIFVDGSL 461 (568)
Q Consensus 416 D~-~~r~~i~~~l~~~-~~-g~tiil~tH~~--~--------------------e~~~l~dri~il~~G~l 461 (568)
|+ ...+.+.+.|+++ ++ |+|||++||+. + +++.+||+|++|++|+.
T Consensus 167 d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 65 6678888888885 43 99999999995 5 78899999999999985
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-24 Score=250.74 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=126.3
Q ss_pred CeEEEEe-----EEEEcCCCCCCCccceeeeeEEEEeC-------CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008362 244 HAIISDN-----LRKIYPGRDGNPEKVAVNGLSLALPS-------GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 311 (568)
Q Consensus 244 ~~i~~~~-----l~k~y~~~~~~~~~~al~~isl~i~~-------Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~ 311 (568)
.+|+++| |++.|++ ++.+++|++|++++ |++++|+|||||||||++|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C-----CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEecC-----CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 4699999 9999942 35799999999987 999999999999999999999 98863
Q ss_pred CeeCCCcHHHhhcceE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 312 GLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 312 G~~i~~~~~~~r~~ig-~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
+.++| ||||+.. .+|+.|++. ..+|+.+ ...+..+++|++|+
T Consensus 815 -----------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d--~~~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 -----------MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASD--RIMSGESTFFVELS 857 (1022)
T ss_dssp -----------HHTTTCCEESSEE---EECCCSBEE---------------------EECC-----------CHHHHHHH
T ss_pred -----------HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHH--HHhhchhhhHHHHH
Confidence 23566 9999863 455555441 1234431 33445577888887
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEE--eec
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASR-NNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIG 465 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r-~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~--~~g 465 (568)
+ +++|++++.+|+++|||||++|+|+... ..+|++++.+ ++ |.++|++||++++++.+||++.++ +|++. ..|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 6 9999999999999999999999999985 5579999886 44 899999999999999999999887 58888 456
Q ss_pred CHHH
Q 008362 466 NPKE 469 (568)
Q Consensus 466 ~~~~ 469 (568)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5544
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-26 Score=237.15 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=138.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLA-----------------------LPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~-----------------------i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
...|+++||+|.|+ ++++++++. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~--------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYL--------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh--------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 44699999999994 366666654 89999999999999999999999999
Q ss_pred CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 008362 300 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379 (568)
Q Consensus 300 l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 379 (568)
+++|+.|. +++++++|++.+++. |++||+.+.. .+|.+.....+.+.+.++.++ . +..+
T Consensus 113 ll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~--~~~~ 171 (312)
T 3aez_A 113 LLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-S--GSDY 171 (312)
T ss_dssp HHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-T--TCSC
T ss_pred hccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-C--Cccc
Confidence 99998663 468999999999988 9999986532 235444444567788888887 3 2456
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH-HHhCCEEEEEEC
Q 008362 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVD 458 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~-~~l~dri~il~~ 458 (568)
.++.+|||||+||+++|+|++.+|++||||||++.+|+.. .. +.+. -+.+ |+++|+.+.+ +++++|...+.+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~~-~D~~-I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSDL-FDFS-LYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGGG-CSEE-EEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHHh-cCcE-EEEECCHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999998621 11 1111 1344 5566676653 445666555555
Q ss_pred CE
Q 008362 459 GS 460 (568)
Q Consensus 459 G~ 460 (568)
|+
T Consensus 245 ~~ 246 (312)
T 3aez_A 245 TA 246 (312)
T ss_dssp TG
T ss_pred cc
Confidence 44
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-25 Score=227.02 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=111.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
+++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence 7999999999999999999999999999999999999999999999965211 1112344555430
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
|||+||++||+||..+|++++|||||+ .++++
T Consensus 225 -----------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~ 256 (330)
T 2pt7_A 225 -----------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYD 256 (330)
T ss_dssp -----------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHH
T ss_pred -----------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHH
Confidence 899999999999999999999999998 24677
Q ss_pred HHHHhcCC-ceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 426 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 426 ~l~~~~~g-~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.++.+..| .|+|+|||+++ +...|||+++|.+|+.
T Consensus 257 ~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 257 FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 77776665 48999999998 7778999999988864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-24 Score=212.68 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=119.3
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
++.+|+|+||++++|+++||+|||||||||++++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCHh
Confidence 467999999999999999999999999999999999976 544433 3467899999985 77889999
Q ss_pred HHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 008362 343 EHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420 (568)
Q Consensus 343 e~l~~~~~l~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r 420 (568)
|++.+.....+.... ...+.+.+.++.+ . ...++++.+||+||+||+++ ++++.+|+++|+|||....|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~--~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--V--EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--H--TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--H--CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 999876544333221 1233445555543 2 24678889999999999988 6889999999999998888764
Q ss_pred HHHHHHHHHhcCCceEEEEcCCHHHH-HHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 421 NNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 421 ~~i~~~l~~~~~g~tiil~tH~~~e~-~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++ +. .+.+|+++||+...+ ..+++++ ++|+ +.+++.+++
T Consensus 150 --l~----~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 --IR----DM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp --HH----TT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred --HH----Hh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 22 11 388999999974444 4555545 6675 677776654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=221.32 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=74.0
Q ss_pred ccCCCC-ChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 380 KQAGKY-SGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 380 ~~~~~L-SgG~kqrl~la~Al~~~p--~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+++.+| |||||||++||+|++.+| +++||||||+|||+.++..+.++|+++.+|+|||++||+++.+. .|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 99999999999999999999999998766999999999999886 59999999
Q ss_pred ECCE
Q 008362 457 VDGS 460 (568)
Q Consensus 457 ~~G~ 460 (568)
++|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-23 Score=235.15 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=128.3
Q ss_pred HHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc----------hhHH
Q 008362 291 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG----------PALT 360 (568)
Q Consensus 291 TTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~----------~~~~ 360 (568)
+|...|..+.++|.+|+|.++|+++.. +..+|+.|++.+...+. .+. ++.
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~- 441 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLKNLN-LTEREREIVGELLKEI- 441 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHH-
T ss_pred ccchhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHH-
Confidence 445567778899999999999998732 22245555555533221 110 111
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEE
Q 008362 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAII 437 (568)
Q Consensus 361 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tii 437 (568)
++..+.|+.+||.. ...++++.+|||||||||+||+||+.+|+ ++||||||+||||..++.++++|++++ +|.|||
T Consensus 442 ~~~~~~L~~vgL~~-l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 442 EKRLEFLVDVGLEY-LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp HHHHHHHHTTTCTT-CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHcCCcc-ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 23456788899963 23689999999999999999999999887 999999999999999999999999975 599999
Q ss_pred EEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 438 LTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 438 l~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
++|||++++.. ||||++| ++|++++.|+++++.+
T Consensus 521 vVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 521 VVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99999999876 9999999 8999999999999864
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-22 Score=205.05 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.6
Q ss_pred ccccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhC
Q 008362 378 ADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 378 ~~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~ 450 (568)
.++++.+||||||| |+++|+|++.+|+++||||||+||||..++.+++.|+++ ++|+|||++||+. ++...|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHhC
Confidence 46789999999999 678889999999999999999999999999999999985 4688999999995 567789
Q ss_pred CEEEEEE
Q 008362 451 DRLGIFV 457 (568)
Q Consensus 451 dri~il~ 457 (568)
||+++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999886
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-22 Score=218.33 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=121.7
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
+..+++|++++|.||||||||||+++++|..+|+ |+ +.+.+.+|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~ 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----Y 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----H
Confidence 3499999999999999999999999999998875 43 11345555531 0122221 1
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA-----SRNNLWN 425 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~-----~r~~i~~ 425 (568)
..+.+ +++ +...|+. ...+..+.+|||||+||+.+|+++..+|+++++| ||+|||+. .++.+++
T Consensus 330 ~~g~~-------~~~-~~~~g~~--~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLL--KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp TTSCC-------HHH-HHHTTSE--EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCE--EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 11222 112 2245554 3678889999999999999999999999999999 99999999 9999999
Q ss_pred HHHHhc-CCceEEEEcCCH----------HHHHHhCCEEEEEECCE
Q 008362 426 VVKRAK-QGRAIILTTHSM----------EEAEALCDRLGIFVDGS 460 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~----------~e~~~l~dri~il~~G~ 460 (568)
+++.++ +|.|||++||++ ++++.+||+|++|++|+
T Consensus 399 ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 998864 699999999999 88889999999999987
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-22 Score=231.95 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=120.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHH--------hCCCCCCceEEEECCeeCC
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM--------IGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l--------~Gl~~p~~G~i~i~G~~i~ 316 (568)
.+.+++.+.-+-... .+.+.+++|++|++++|++++|+|||||||||++|++ .|...|.++..
T Consensus 631 ~i~i~~~rHP~le~~-~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQ-DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC---CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred ceEeecCccchhhhc-CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 466666554332111 1135789999999999999999999999999999999 55544433211
Q ss_pred CcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 317 ~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
++.+ ++++..+|+. +.....+|+|++++..+|
T Consensus 702 ---------~~~~----------------------------------d~i~~~ig~~-----d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 ---------VSIV----------------------------------DCILARVGAG-----DSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp ---------EECC----------------------------------SEEEEECC--------------CHHHHHHHHHH
T ss_pred ---------chHH----------------------------------HHHHHhcCch-----hhHHHhHhhhHHHHHHHH
Confidence 1100 0122334432 234456888888888888
Q ss_pred HHH--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 397 ISL--IGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al--~~~p~lllLDEPtsgLD~~~r~~i-~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+++ +.+|+++||||||+|+||..+..+ |.+++.+ + .|+++|++||+++.+ .+||++..+.+|++.+.++.+++
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 888 999999999999999999999888 7777775 3 489999999997655 68999999999999998887654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=215.81 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CE
Q 008362 338 TLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KV 405 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~----------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~l 405 (568)
.+||.|++.|+..+. ++. +++.+++ +.|+.+||.. -..++++.+||||||||++||++|..+| ++
T Consensus 451 ~ltV~e~~~f~e~l~-l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~-l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 451 AMSVTEALAFFDGLE-LTEKEAQIARLILREIRDRL-GFLQNVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp TSBHHHHHHHHHHCC-CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTT-SBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCc-cccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 589999999976663 444 2344555 4589999963 2369999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+||||||+||||..++.++++|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999975 5999999999999986 69999999 7999999999988743
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=214.80 Aligned_cols=180 Identities=24% Similarity=0.294 Sum_probs=132.9
Q ss_pred CCCCcHHHHHHHHhCC---------CCCCceEEEECCeeCCC----cHHHhhcceEEEcCCCCCCC----CCCHHHHHHH
Q 008362 285 PNGAGKTTFISMMIGI---------TRTTSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWE----TLTGREHLLF 347 (568)
Q Consensus 285 ~NGaGKTTll~~l~Gl---------~~p~~G~i~i~G~~i~~----~~~~~r~~ig~~~Q~~~l~~----~lTv~e~l~~ 347 (568)
.+..||+|+.+.+... +.|.+|+|.++|+++.. ...+....++-+||...... .++. ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4667999999988874 45678999999998743 12222222222333211000 0111 11111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~lllLDEPtsgLD~~~r~~i~~ 425 (568)
...+ .+++.++++ .++.+||.+ -..++++.+|||||||||.||+||..+| +++||||||+||||..++.+++
T Consensus 349 ~~~i----~~ei~~rl~-~L~~vGL~~-l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 349 LQRM----AADLVKRLD-VLLHLGLGY-LGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS 422 (842)
T ss_dssp HHHH----HHHHHHHHH-HHHHTTCTT-SBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHH----HHHHHHHHH-HHHhCCCCc-CCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH
Confidence 1111 245566676 688999963 2369999999999999999999999999 5999999999999999999999
Q ss_pred HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 426 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 423 ~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 423 ALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999975 5999999999999876 69999999 7999999999987643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-22 Score=207.80 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=88.9
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceEEEECCeeCCCcHHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p~~G~i~i~G~~i~~~~~~~r~~ig 327 (568)
+||+|.|++ +.++++++|+| +|+||||||||||+++|.|. ..|++| +.++|.++.... . ++.++
T Consensus 2 ~~l~~~~~~------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEAST 66 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CE
T ss_pred CCCcceECC------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEE
Confidence 588999973 67999999999 99999999999999999998 889999 888888764322 1 35689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEE
Q 008362 328 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 407 (568)
Q Consensus 328 ~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lll 407 (568)
+++|.+.+...+|+.|+..+...... .+..+..++. ++ +..+++++++|||||||+.+|||++ +++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~-l~-------~~~~~~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISY-ID-------EQFERYLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EEEC---CCEEEEEEEEC-------------CTTHHHH-HH-------HHHHHHHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHH-HH-------HHHHHHHHHhCHHhhhhhhhhhhhh----eee
Confidence 99999888888999998876433210 0110111111 11 1356788899999999999998886 999
Q ss_pred EeCCCC-CCCHHHHHHHHHHHHHhc--CCceEEEEcCCHH
Q 008362 408 MDEPST-GLDPASRNNLWNVVKRAK--QGRAIILTTHSME 444 (568)
Q Consensus 408 LDEPts-gLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~ 444 (568)
+||||+ |||+..+ ++++++. .+.++|+++||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999998 5999874 4555543 3789999999985
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-22 Score=197.72 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=102.3
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----------eecCCccee-------
Confidence 3899999 9999999999999999999999999999998 999999997653 333322100
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
. .. +.+++.. .+| |++||+||..+|+++++|||| |+.+.+.+
T Consensus 75 -------v---~q-----------~~~gl~~--------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 75 -------V---NQ-----------REVGEDT--------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -------E---EE-----------EEBTTTB--------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -------e---eH-----------HHhCCCH--------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 0 00 0344421 122 899999999999999999999 99886544
Q ss_pred HHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 424 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 424 ~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++....|.+|+++||+.+ +...|||++.|..
T Consensus 117 ---l~~~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 ---LRAAETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred ---HHHHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 444457999999999987 6678999988754
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-20 Score=168.99 Aligned_cols=83 Identities=28% Similarity=0.407 Sum_probs=75.0
Q ss_pred ccccCCCCChhHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhC
Q 008362 378 ADKQAGKYSGGMKRRLSVA------ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la------~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~ 450 (568)
.++++++||||||||++|| +|++++|++++|||||+|||+.+++.+++.+++. ++|+|||++||++ ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5788999999999999886 8999999999999999999999999999999986 4589999999999 567899
Q ss_pred CEEEEE--ECCEE
Q 008362 451 DRLGIF--VDGSL 461 (568)
Q Consensus 451 dri~il--~~G~l 461 (568)
|++++| .+|.-
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=191.31 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred ccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEE
Q 008362 380 KQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~ 454 (568)
+++..||||||||++||++|+ ++|+++||||||++||+..++.+.+.|++.. ++.++|++||+.+.. ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 7899999999999999999999999999874 589999999997654 5799999
Q ss_pred EEE
Q 008362 455 IFV 457 (568)
Q Consensus 455 il~ 457 (568)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-21 Score=217.00 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=112.9
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+++|+||+ |++++|+|||||||||++|+|+|+.. |+.|.+. . ..+..+|+++| +++.+++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---EEEECCC-
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccceeeHHH---hhccCCHH
Confidence 5799999999 99999999999999999999999874 6777642 1 12346888877 55666666
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--cCCCCEEEEeCC---CCCCCH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 417 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al--~~~p~lllLDEP---tsgLD~ 417 (568)
||+.. .+|+||++++.+|+++ +.+|+++||||| |+++|+
T Consensus 630 d~l~~------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 630 DDLAG------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp -----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHHHh------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 65431 2588999999999999 999999999999 999999
Q ss_pred HHH-HHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 418 ASR-NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 418 ~~r-~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
.++ ..+.+.+.+ .|.++|++||+++.++ +| .-.+.++++.+...
T Consensus 674 ~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 674 VAIATAVAEALHE--RRAYTLFATHYFELTA-LG--LPRLKNLHVAAREE 718 (765)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHh--CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEEEc
Confidence 886 468887766 5899999999998865 56 33355666666543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-21 Score=189.47 Aligned_cols=148 Identities=10% Similarity=0.079 Sum_probs=96.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-------CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRT-------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-------~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
.+++||+++|+||||||||||+++|+|+..| ..|.+++++.+... ++++++++|...+++. |+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 7899999999999999999999999996555 44577877765311 1234555565554443 555554
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHH-------cCCCCEEEEeCCCCCCCH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISL-------IGNPKVVYMDEPSTGLDP 417 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~-kqrl~la~Al-------~~~p~lllLDEPtsgLD~ 417 (568)
.+... .++++ ++.+..++++ ..+|+++++||||+++|+
T Consensus 95 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 95 YVARA----------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp EEEEC----------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred EEEec----------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 43211 11111 1122223322 358999999999999998
Q ss_pred H-------HH-----HHHHHHHHHh-c-CCceEEEEcCCHHH----HHHhCCEEEEEECCE
Q 008362 418 A-------SR-----NNLWNVVKRA-K-QGRAIILTTHSMEE----AEALCDRLGIFVDGS 460 (568)
Q Consensus 418 ~-------~r-----~~i~~~l~~~-~-~g~tiil~tH~~~e----~~~l~dri~il~~G~ 460 (568)
. .+ +++++.+.+. + .|.|||++||.+++ ++.+||++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3 22 3566666654 3 49999999996665 999999999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-21 Score=220.30 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=105.9
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
++.+++|+||++++|++++|+|||||||||+||+++++.... +.-+++|+...-.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------q~g~~vpa~~~~i~~---- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------QIGSYVPAEEATIGI---- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------HHTCCBSSSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------hcCccccchhhhhhH----
Confidence 357999999999999999999999999999999997642110 001122322110000
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
+++++..+++. +...+..+++|+||+|++.++++ +.+|+++||||||+|+||..+..
T Consensus 716 --------------------~d~i~~~ig~~--d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 716 --------------------VDGIFTRMGAA--DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp --------------------CSEEEEEC------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred --------------------HHHHHHhCChH--HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 01122334443 24556678899999999999999 89999999999999999999988
Q ss_pred HH-HHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEE-EECCEEEe
Q 008362 423 LW-NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI-FVDGSLQC 463 (568)
Q Consensus 423 i~-~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~i-l~~G~l~~ 463 (568)
+. .+++.+ + .|.++|++||+++.+ .+||+..- +.++++.+
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 86 677765 3 599999999998776 46776532 45566555
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-22 Score=221.80 Aligned_cols=190 Identities=15% Similarity=0.244 Sum_probs=123.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeee----------EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCe
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGL----------SLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGL 313 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~i----------sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~ 313 (568)
.+.++||++.|+.. .++.++.+ +++++. +||+||||||||||+++|+|+..| ++|+|+++|.
T Consensus 10 ~i~~~~l~~~~~~~----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEK----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPL 82 (608)
T ss_dssp ----------CHHH----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCE
T ss_pred hhhhhhhhHHHHHH----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCE
Confidence 47889999999631 12344433 366654 999999999999999999999988 8999999999
Q ss_pred eCCC----cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 314 DIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 314 ~i~~----~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
++.. ....+++.+||+||+..+++.+||+||+.+.....+... -++.
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s---------------- 133 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS---------------- 133 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC----------------
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc----------------
Confidence 8631 123567889999999999999999999987543211100 1111
Q ss_pred HHHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHh-c--CCceEEEEcCCHHH--------HHHh---
Q 008362 390 KRRLSVAISLIGNPKVVYMDEP------STGLDPASRNNLWNVVKRA-K--QGRAIILTTHSMEE--------AEAL--- 449 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEP------tsgLD~~~r~~i~~~l~~~-~--~g~tiil~tH~~~e--------~~~l--- 449 (568)
++++.++++....|+++++||| |+|||+..++.++++++++ + .+.+++++||+++. +..+
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 1122333344568999999999 9999999999999999984 3 36789999999762 2332
Q ss_pred -CCEEEEEECCEEEeecCHHHH
Q 008362 450 -CDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 450 -~dri~il~~G~l~~~g~~~~l 470 (568)
+..|+|+.++.++..|+.+++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCC
T ss_pred CCceEEEecchhhcCcccHHHH
Confidence 356899999998888876543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-22 Score=194.44 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=118.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC--CCCCHHHHHHHHhhh
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW--ETLTGREHLLFYGRL 351 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~--~~lTv~e~l~~~~~l 351 (568)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999998865 489999998876 5689999876532
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH----HHHHHHHHHcCCCCEEEEeCCCCC-------CCHHHH
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK----RRLSVAISLIGNPKVVYMDEPSTG-------LDPASR 420 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k----qrl~la~Al~~~p~lllLDEPtsg-------LD~~~r 420 (568)
+.+.....+++.+.++.+++.+ ..++++.++|+||+ ||+++|++++.+|+++++||||++ ||+..+
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRGL--PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTTC--CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred -CChhhhhHHHHHHHHHHHHcCC--CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 2222223456777888888863 56778999999974 688999999999999999999999 999999
Q ss_pred HHHHHHHHHh--cCCceEEEEcCCHH
Q 008362 421 NNLWNVVKRA--KQGRAIILTTHSME 444 (568)
Q Consensus 421 ~~i~~~l~~~--~~g~tiil~tH~~~ 444 (568)
..+++.+++. .+|+|++.++|++.
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999998764 46999999999854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-21 Score=187.75 Aligned_cols=146 Identities=17% Similarity=0.230 Sum_probs=107.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCH----HHHH
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG----REHL 345 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv----~e~l 345 (568)
-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.|.+... ..++.++|+||++.+|+.+++ .||+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 46789999999999999999999999999986 78999998876542 235679999998776666666 4444
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
.+++..+|.+. +.+++ ++..++++||| ||+.+++.+++
T Consensus 88 ~~~~~~yg~~~----~~v~~---------------------------------~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 88 EVFGNYYGTSR----EAIEQ---------------------------------VLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp EETTEEEEEEH----HHHHH---------------------------------HHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred HHHhccCCCCH----HHHHH---------------------------------HHhcCCeEEEE-----ECHHHHHHHHH
Confidence 43333332211 12222 23336999999 99999999999
Q ss_pred HHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 426 ~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+. +++||+++||+++++++ |+ +.+| .++++++.+++
T Consensus 126 ~l~---~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 126 KMP---HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HCT---TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred Hcc---CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 875 68999999999999876 43 6777 68888887764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-21 Score=187.49 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~ 356 (568)
|++++|+||||||||||+++|+|+++ ++| |.++|+++.. ....++++||++|+. ... ++++ +++.. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-VRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-EP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-EETTSSEEEEEEEET--TSC---EEEE---EECCC-CC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-hHhhhceEEEEEEec--ccc---eehh---hcccc-cC
Confidence 78999999999999999999999999 999 9999988743 334678899999975 111 1111 11110 00
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 008362 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVAI---SLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 357 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl-~la~---Al~~~p~lllLDE--PtsgLD~~~r~~i~~~l~~~ 430 (568)
. ...- .....++...+|+|||+++ ++++ |+..+|+++|+|| |+..+|+...+.+.+++..
T Consensus 69 ~-----------~~~~--~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~- 134 (189)
T 2i3b_A 69 P-----------PGKR--ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST- 134 (189)
T ss_dssp C-----------SSSC--CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-
T ss_pred C-----------cccc--ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-
Confidence 0 0000 0123555667999999888 4454 6899999999999 8999999887777777653
Q ss_pred cCCceEEE----EcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 431 KQGRAIIL----TTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 431 ~~g~tiil----~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
..++|+ +||+.+ ..++|||..+.+|++....
T Consensus 135 --~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 135 --PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred --CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 344553 349863 2344455455778877643
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-20 Score=193.88 Aligned_cols=149 Identities=16% Similarity=0.103 Sum_probs=109.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHHh--hcceEEEcCCCCCCCCCCHHHHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRI--YTSMGVCPQEDLLWETLTGREHLLFY 348 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~--r~~ig~~~Q~~~l~~~lTv~e~l~~~ 348 (568)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+... ...+ +..+++++|++.++|.+|++|++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998542 1122 45799999999999989999999864
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008362 349 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428 (568)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~ 428 (568)
. .++.. ..+++..|+.+ ..++.+ +...|||+++|||++.+|+.++| +||+.+++.+.+.++
T Consensus 181 ~-~~~~d--------~~llDt~G~~~--~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 181 K-ARGYD--------LLFVDTAGRLH--TKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAK 241 (304)
T ss_dssp H-HHTCS--------EEEECCCCCCT--TCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHH
T ss_pred H-hCCCC--------EEEecCCCCCC--chHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHH
Confidence 2 12110 01233445432 233334 44458999999999999994444 455555556666666
Q ss_pred Hhc--CCceEEEEcCCH
Q 008362 429 RAK--QGRAIILTTHSM 443 (568)
Q Consensus 429 ~~~--~g~tiil~tH~~ 443 (568)
+.. .|.|+|++||+.
T Consensus 242 ~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 242 KFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHCCSEEEEECTT
T ss_pred HHHHHcCCcEEEEECCc
Confidence 642 389999999984
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-20 Score=209.92 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=110.6
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+++|+||+ ++|++++|+|||||||||++|+|+|+..+ ..| ..+.. .+..+|+++| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCHH
Confidence 5699999999 99999999999999999999999997432 222 11211 1234666655 45555555
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
|++.. ..+++|+||++ ++.+...+.+|+++|||||++|+|+..+..
T Consensus 661 d~l~~---------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 661 DDLAS---------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp ------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred HHHHh---------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 55421 11245777764 455556799999999999999999988877
Q ss_pred H-HHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 423 L-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 423 i-~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+ +++++.+ + .|.++|++||+++.++ +||++..+.+|++.+...
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEEc
Confidence 5 8888875 4 4899999999998764 899988889999877643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-19 Score=173.83 Aligned_cols=169 Identities=16% Similarity=0.065 Sum_probs=118.7
Q ss_pred cceeeeeEE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCCCCCCCCCH
Q 008362 264 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl-~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
..+|+++.. .+++|++++|+||||||||||++.|++...+++|.+.+.+.+.... .......+|+.+|..... .+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI- 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE-
Confidence 568999988 8999999999999999999999999998888888888876554321 111112344444321100 000
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCC--CH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL--DP 417 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgL--D~ 417 (568)
.+.... ...+ . .+.. ...|.+++++...+.+...+|+ ++++||||+++ |+
T Consensus 87 --------~~~~~~------------~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 87 --------IIDALM------------KEKE-D--QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp --------EEECCC-----------------C--TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred --------EEeccc------------cccC-c--eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 000000 0000 1 0111 2349999998888888888999 99999999888 99
Q ss_pred HHHHHHHHHHHHh-c-CCceEEEEcCCH--------HHHHHhCCEEEEEECCE
Q 008362 418 ASRNNLWNVVKRA-K-QGRAIILTTHSM--------EEAEALCDRLGIFVDGS 460 (568)
Q Consensus 418 ~~r~~i~~~l~~~-~-~g~tiil~tH~~--------~e~~~l~dri~il~~G~ 460 (568)
..++++++.|+++ + .|.|||++||++ ..++.+||++++|++.+
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999999999875 3 599999999999 55899999999998764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-20 Score=181.94 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=100.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceEEEECCeeCCCcH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTDM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-----~p~~G~i~i~G~~i~~~~ 319 (568)
+++++|++|.|+ ..++++ |.+++|+.++|+|+||||||||++.|+|.. .|+.|++...+.-.....
T Consensus 3 ~l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 478999999995 247888 899999999999999999999999999998 888898765331100000
Q ss_pred HHhhcceEEEcCCCCCCCCCC---HHHHHHHHhh----hcC--------CCchhHHHHHHHHHHHcCCCCCCcccccCCC
Q 008362 320 DRIYTSMGVCPQEDLLWETLT---GREHLLFYGR----LKN--------LKGPALTQAVEESLKSVNLFHGGVADKQAGK 384 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lT---v~e~l~~~~~----l~~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~ 384 (568)
..+...-|+..+. .+.-. .+..+..+.+ ..+ .......+++.++++..++.. -....++..
T Consensus 74 ~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~nK~D~ 149 (210)
T 1pui_A 74 KRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV-LVLLTKADK 149 (210)
T ss_dssp EEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGG
T ss_pred EEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEecccC
Confidence 0000000110000 00000 1111222111 000 011122345566677777752 123677889
Q ss_pred CChhHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCce
Q 008362 385 YSGGMKRR-LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRA 435 (568)
Q Consensus 385 LSgG~kqr-l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~t 435 (568)
+|+||||| +..+++++.+|+.+++|||||++|+..++++++.|.+. .++.+
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 99999999 89999999999999999999999999999999999874 44543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-23 Score=194.07 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~ 356 (568)
|++++|+|||||||||++++|++ |.+|.+.++|.++.. ....|+++|.....+.+++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999997 778999999866532 1246778886655555688888876543221000
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCC--ChhHHHHHHHHH------HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008362 357 PALTQAVEESLKSVNLFHGGVADKQAGKY--SGGMKRRLSVAI------SLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428 (568)
Q Consensus 357 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~L--SgG~kqrl~la~------Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~ 428 (568)
. ..+++.+.. ....+...++ |+||+|++.++. +++.+|+...+|| |+|+..++. |+.+.
T Consensus 74 ~------~~ild~~~~---~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 74 N------DVVLDYIAF---PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp C------EEEEESCCC---HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred C------cEEEeeccC---HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 0 001111110 0111222334 889998988888 8888998888884 899999999 99988
Q ss_pred Hhc-CCceEEEEcCC-HHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 429 RAK-QGRAIILTTHS-MEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 429 ~~~-~g~tiil~tH~-~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
... .+.++|.+||. +++++++||+|+ ++|++++.|+++-+..
T Consensus 141 ~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 141 SKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred hcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 764 57899999999 999999999998 9999999999877643
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-20 Score=195.66 Aligned_cols=165 Identities=20% Similarity=0.185 Sum_probs=101.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|.++||++.|++ +.+++|+||+| +|+|+||||||||+++|+|...|+.|. +|.++.......+
T Consensus 10 ~~l~~~~l~~~y~~------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEE
T ss_pred CcEEEEecceeECC------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceee
Confidence 36899999999973 57999999998 999999999999999999998876652 3333221111123
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+++++|++.+++.+|+.|++.+...... .+..+.+.+.++ ..++.+++||++||||++.+|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EEEECC------CEEEEEEECC--------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCC
Confidence 568999999988888999999887543221 111111222221 134557788999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 404 K---VVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 404 ~---lllLDEPt-sgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
+ ++++|||| .|||+... ++++++..+.+||++.|..|
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTT
T ss_pred CeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEccc
Confidence 9 99999999 69999874 34445555778888877665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-20 Score=191.39 Aligned_cols=163 Identities=12% Similarity=0.100 Sum_probs=106.1
Q ss_pred ceeeee-EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCc----eE-EEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 265 VAVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTS----GT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 265 ~al~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~----G~-i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
..||++ ++.+++|++++|+||||||||||++.++|.. +|++ |+ |++++++.. .++++++++|...++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCCC
Confidence 467776 6899999999999999999999999999988 7777 67 899987642 134567778876655
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-------CCCCEEEEe
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-------GNPKVVYMD 409 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~-------~~p~lllLD 409 (568)
+. ++.||+.+... . -|.+++|++.++++++ .+|+++++|
T Consensus 193 ~~-~v~~ni~~~~~---~------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 193 PD-EVLKHIYVARA---F------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp HH-HHGGGEEEEEC---C------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred HH-HHhhCEEEEec---C------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 44 55555433210 0 0334455555555555 799999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 410 EPSTGLDPAS------------RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 410 EPtsgLD~~~------------r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|||+++|+.. .++++..|+++ + .|+|||+++|.....+..++.......|++.+.++
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 9999999962 34555556553 3 58999999999887765555555666777665544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-18 Score=170.86 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=105.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.+++|++++|+||||||||||++.++|... .|++ +.|.+... ...+.|+..+... -.+.+.+. .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~---~~- 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP-----TGPVIYLPAEDPP---TAIHHRLH---AL- 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC-----CCCEEEEESSSCH---HHHHHHHH---HH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC-----CccEEEEECCCCH---HHHHHHHH---HH-
Confidence 478999999999999999999999998654 5665 34554321 2357777655421 01111111 11
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHHHHHH
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST--GLDPASR---NNLWNVV 427 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts--gLD~~~r---~~i~~~l 427 (568)
+.... ....+++++.+++.+ ..++++..||+||+|++ ++++.+|+++++||||+ ++|+..+ +++++.|
T Consensus 91 g~~~~--~~~~~~~~~~l~l~~--~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 91 GAHLS--AEERQAVADGLLIQP--LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp HTTSC--HHHHHHHHHHEEECC--CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred HhhcC--hhhhhhccCceEEee--cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 11111 133566778888863 67889999999998865 68888999999999999 9998544 7788888
Q ss_pred HHh-c-CCceEEEEcCCHHHHH
Q 008362 428 KRA-K-QGRAIILTTHSMEEAE 447 (568)
Q Consensus 428 ~~~-~-~g~tiil~tH~~~e~~ 447 (568)
+++ + .|+|||+++|+.++++
T Consensus 164 ~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHcCCEEEEEecCCCccc
Confidence 775 3 4999999999998765
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-18 Score=182.13 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=96.1
Q ss_pred ceeeeeEE-------EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 265 VAVNGLSL-------ALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 265 ~al~~isl-------~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
..++++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++... .+...++++|.....
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~~ 180 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVHR 180 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBTT
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeecc
Confidence 45566655 67889999999999999999999999999987 56665443333211 122344555543222
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD 416 (568)
..++..+ +||+||..+|+++++|||| |
T Consensus 181 ~~~~~~~--------------------------------------------------~La~aL~~~PdvillDEp~---d 207 (356)
T 3jvv_A 181 DTLGFSE--------------------------------------------------ALRSALREDPDIILVGEMR---D 207 (356)
T ss_dssp TBSCHHH--------------------------------------------------HHHHHTTSCCSEEEESCCC---S
T ss_pred ccCCHHH--------------------------------------------------HHHHHhhhCcCEEecCCCC---C
Confidence 2222221 9999999999999999999 6
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 417 PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 417 ~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
+...+.+.+ ....|++|++|+|+.+.+ ..|||++.|..|
T Consensus 208 ~e~~~~~~~---~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 208 LETIRLALT---AAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHHHH---HHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHHHHH---HHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 655333332 245699999999999988 679999888654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-22 Score=209.93 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=115.0
Q ss_pred eeeeEEEEeC--CcEEEEEcCCCCcHHHHHHHHhCCCCCCc----eEEEEC----CeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 267 VNGLSLALPS--GECFGMLGPNGAGKTTFISMMIGITRTTS----GTAYVQ----GLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 267 l~~isl~i~~--Gei~~LlG~NGaGKTTll~~l~Gl~~p~~----G~i~i~----G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
.+.|+++|++ |+.++|+||||||||||+|+|+|+++|++ |+++++ |.++.....+. ++|++++|+..++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY 236 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 777664 32221111111 2244444322111
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-CCCCEEEEeC---CC
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNPKVVYMDE---PS 412 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~-~~p~lllLDE---Pt 412 (568)
. .|+.||+.+ ++. +..++.+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 237 ~-~t~~~nl~~----------------------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 237 A-VRHSHKIAF----------------------IDT---DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp H-HHHCSSEEE----------------------ESS---CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred H-HhccCCEEE----------------------EeC---CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 1 122222111 010 1223334456677788888888774 6999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 413 ------TGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 413 ------sgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.++|+..|..+.+.+++. + .|.+|++++|. ++.+++|+++.++++ +...+++++|++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 589999999999999875 3 38999999976 577788988877754 445566666543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-20 Score=173.70 Aligned_cols=152 Identities=10% Similarity=-0.001 Sum_probs=101.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|+.. +.+|+.|++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4779999999999999999999999998 78999999997653211 11234678888644 4578899987654321
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcc--cccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVA--DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~ 430 (568)
...... ..++.+++..++. ... +.++..+|+|++||+.++|++..+|+++ +|+..++.+++.+..+
T Consensus 80 ~~~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYF--VILDGVVRPDWLP--AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCE--EEECSCCCTTTTH--HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCe--EEEeccCcHHHHH--HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 000000 0011111111221 111 3456789999999999999999999876 6899888898888664
Q ss_pred cC-CceEEEEcC
Q 008362 431 KQ-GRAIILTTH 441 (568)
Q Consensus 431 ~~-g~tiil~tH 441 (568)
.+ +..+|-++|
T Consensus 148 ~~~~~~~i~t~~ 159 (191)
T 1zp6_A 148 GAFEHHVLPVSG 159 (191)
T ss_dssp GGGGGGEEECTT
T ss_pred CcccccEEECCC
Confidence 32 344555553
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=146.71 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=72.5
Q ss_pred cccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
..++++..||||||||++||++++ .+|++++|||||+|||+.+++.++++|++..++.++|++||+.... ..|||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 456778999999999999999997 4579999999999999999999999999887778999999997654 68999
Q ss_pred EEEE--ECCE
Q 008362 453 LGIF--VDGS 460 (568)
Q Consensus 453 i~il--~~G~ 460 (568)
++.+ .+|.
T Consensus 136 i~~v~~~~g~ 145 (173)
T 3kta_B 136 IIGVSMRDGV 145 (173)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCE
Confidence 9865 4554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-17 Score=161.02 Aligned_cols=146 Identities=12% Similarity=0.184 Sum_probs=88.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCC-----CceEEEECCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG--ITRT-----TSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p-----~~G~i~i~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+... ...+.++.+|+.+|+ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 588999999999999999999999999 5665 67889998876311 122233445544431 112
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH-HHHHHHHc--CCCCEEEEeCCCCCCCHH--
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR-LSVAISLI--GNPKVVYMDEPSTGLDPA-- 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr-l~la~Al~--~~p~lllLDEPtsgLD~~-- 418 (568)
|+.+. ...+..+..+ +.-+.+++ .+|+++++|||++.+|+.
T Consensus 92 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 92 NVAYA----------------------------------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp TEEEE----------------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred CeEEE----------------------------------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 21110 0122222211 12122222 689999999999999985
Q ss_pred -----H-----HHHHHHHHHHh-c-CCceEEEEcCCHHHHHH-------------------hCCEEEEEECCE
Q 008362 419 -----S-----RNNLWNVVKRA-K-QGRAIILTTHSMEEAEA-------------------LCDRLGIFVDGS 460 (568)
Q Consensus 419 -----~-----r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~-------------------l~dri~il~~G~ 460 (568)
. .+++++.+++. + .|.|||+++|..++.+. +||++++|++|+
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 23455555543 3 49999999998877654 899999998763
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-17 Score=156.97 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=101.8
Q ss_pred cceeeeeEE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl-~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
...||++.. .+++|++++|.||||||||||++.+++ ++..+.+++++.+ . .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~-------------------~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG-------------------G----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC-------------------C----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC-------------------C----CCHH
Confidence 457777775 799999999999999999999999999 4444444444322 0 1111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--HHHHHHHHHHcCC-CCEEEEeCCCCCCCHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--KRRLSVAISLIGN-PKVVYMDEPSTGLDPAS 419 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~--kqrl~la~Al~~~-p~lllLDEPtsgLD~~~ 419 (568)
+ +.-.....+... +++++.+. +.++|+++ +++++.+++++.+ |+++++||||+++|+..
T Consensus 61 ~-~~~~~~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 61 R-LVQMAETRGLNP-------EEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp H-HHHHHHTTTCCH-------HHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred H-HHHHHHhcCCCh-------HHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 1 110011111111 11222222 22344554 5688888999986 99999999999999843
Q ss_pred H-----HH---HHHHHHHh-c-CCceEEEEcCCHH-------------HHHHhCCEEEEEECCE
Q 008362 420 R-----NN---LWNVVKRA-K-QGRAIILTTHSME-------------EAEALCDRLGIFVDGS 460 (568)
Q Consensus 420 r-----~~---i~~~l~~~-~-~g~tiil~tH~~~-------------e~~~l~dri~il~~G~ 460 (568)
. +. +.+.|+++ + .|.|||+++|... .++..||++++|++..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence 2 33 44446654 3 3899999999876 5788999999998653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-20 Score=192.22 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=124.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----- 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~----- 319 (568)
+++++|+++.|+ .+.+++++|+++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....
T Consensus 29 ~ie~~~~~~~~~------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADHRAA------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHHHHH------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCcccccC------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 477889999996 357999999999999999999999999999999999999999999999999885321
Q ss_pred HHhhcceEEEcCCCCCCCCCC------------HHHHHHHH-----------------------------hhhcCCC-ch
Q 008362 320 DRIYTSMGVCPQEDLLWETLT------------GREHLLFY-----------------------------GRLKNLK-GP 357 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lT------------v~e~l~~~-----------------------------~~l~~~~-~~ 357 (568)
...++++|+++|++.++...+ +.|.+... ..+.... .+
T Consensus 103 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp SCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--
T ss_pred HHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcc
Confidence 234678999999988775322 23322111 0000000 01
Q ss_pred hH---HHHHHHHHHHcCCCCCCcccc-cCCCCChhHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008362 358 AL---TQAVEESLKSVNLFHGGVADK-QAGKYSGGMKRRLSVAISLIG------NPKVVYMDEPSTGLDPASRNNLWNVV 427 (568)
Q Consensus 358 ~~---~~~~~~~l~~~~L~~~~~~~~-~~~~LSgG~kqrl~la~Al~~------~p~lllLDEPtsgLD~~~r~~i~~~l 427 (568)
+. ++.+.+....+.+. +.|. ...++|+|++|++..|++++. +|+++. ||++|+....++++.|
T Consensus 183 ~~~~i~~~i~~~~~ivvlN---K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVN---KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp ----CCTTHHHHCSEEEEE---CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEE---chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 10 00111222223332 3453 335689999999999999997 688886 9999999999999999
Q ss_pred HHh
Q 008362 428 KRA 430 (568)
Q Consensus 428 ~~~ 430 (568)
.+.
T Consensus 256 ~~~ 258 (337)
T 2qm8_A 256 EDH 258 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-20 Score=189.56 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=114.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC--------CCCceEEEECCeeCCCc----------------HHHhhcceEEE---c
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT--------RTTSGTAYVQGLDIRTD----------------MDRIYTSMGVC---P 330 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~--------~p~~G~i~i~G~~i~~~----------------~~~~r~~ig~~---~ 330 (568)
++++|+|+||||||||+|+|.|+. .|+.|+|.++|.++... ..+.++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 78999999999987532 22345667877 6
Q ss_pred CCCCCCCCCCHHHHHHHH--hhh-cCC-CchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 331 QEDLLWETLTGREHLLFY--GRL-KNL-KGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 331 Q~~~l~~~lTv~e~l~~~--~~l-~~~-~~~~~--~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
|+..+++++++.|+..+. ..+ +.. ..++. ..+++.++..+++.+ ..++.. ++|+||+||+..+++++.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~--~~~~~~-~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVH--ADEQMN-QFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTT--HHHHHH-HCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHH--HHHHHh-hchHHHHHHHhCCEEEEECcc
Confidence 877666677887776542 110 000 00010 111223344556642 444443 799999999988888888888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~d 451 (568)
++ ||| +++.+.+++++.+.+|+++||+..+++.+.|
T Consensus 162 l~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSC
T ss_pred cC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHhC
Confidence 77 888 7888888887789999999998777766654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-17 Score=174.86 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=101.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 344 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 344 (568)
++++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. ..+..+++++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~------------ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQR------------ 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEee------------
Confidence 456655 7899999999999999999999999999998 8999887766532 245678899884
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 008362 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424 (568)
Q Consensus 345 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~ 424 (568)
.+|+. +..+ +.+++++|..+|+++++|||+ |+.. ++
T Consensus 190 ------------------------~~g~~--------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~---~~ 225 (372)
T 2ewv_A 190 ------------------------EVGED--------TKSF------ADALRAALREDPDVIFVGEMR---DLET---VE 225 (372)
T ss_dssp ------------------------EBTTT--------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH---HH
T ss_pred ------------------------ecCCC--------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH---HH
Confidence 13331 1233 469999999999999999999 7765 34
Q ss_pred HHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 425 ~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
..++....|.+|+.|+|+.+ +...|||++.|.
T Consensus 226 ~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAAETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 44555566999999999965 778899987664
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-18 Score=172.65 Aligned_cols=142 Identities=19% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--
Q 008362 276 SGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-- 350 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~---Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-- 350 (568)
++++++|+|||||||||++++|+ |+..|++|++.++|.+... .....++.++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9999999999888765322 223345667888888888899999976321
Q ss_pred ------hcCCCchhHHHHHHHHHH--HcC------------CCCCCcccccCCCCChhHHHHHHHHHHH-cCCCCEEEEe
Q 008362 351 ------LKNLKGPALTQAVEESLK--SVN------------LFHGGVADKQAGKYSGGMKRRLSVAISL-IGNPKVVYMD 409 (568)
Q Consensus 351 ------l~~~~~~~~~~~~~~~l~--~~~------------L~~~~~~~~~~~~LSgG~kqrl~la~Al-~~~p~lllLD 409 (568)
+.|.+... .+++.+.+ .++ +. ...++++.+||| |+ +|+ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~--r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKD--RLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHH--HHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHH--HHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 23333222 22233221 222 21 235778889999 55 778 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhc
Q 008362 410 ----EPSTGLDPASRNNLWNVVKRAK 431 (568)
Q Consensus 410 ----EPtsgLD~~~r~~i~~~l~~~~ 431 (568)
|||+|+|+.+++.+++.++++.
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-18 Score=162.20 Aligned_cols=90 Identities=23% Similarity=0.171 Sum_probs=75.7
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceE
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 327 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig 327 (568)
.+|++|.|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|+++.... ..+ .
T Consensus 10 ~~~~~~~~g------~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~-~~~---~ 78 (158)
T 1htw_A 10 DEFSMLRFG------KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY-NIA---G 78 (158)
T ss_dssp SHHHHHHHH------HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE-EET---T
T ss_pred CHHHHHHHH------HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec-cCC---C
Confidence 356777886 357999999999999999999999999999999999999 99999999998875321 111 2
Q ss_pred EEcCCCCCCCCCCHHHHHHHHh
Q 008362 328 VCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 328 ~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
+++|+..++ .+|+.|++.+.+
T Consensus 79 ~~~q~~~l~-~ltv~e~l~~~g 99 (158)
T 1htw_A 79 KMIYHFDLY-RLADPEELEFMG 99 (158)
T ss_dssp EEEEEEECT-TCSCTTHHHHST
T ss_pred cceeccccc-cCCcHHHHHHcC
Confidence 799998888 899999997643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-17 Score=177.75 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=117.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 321 (568)
.+++++ +|.|++ .+ ++++||++++|++ +||+||||||||||+|+|+|+. ++|.++.. ....
T Consensus 16 ~l~~~~-~~~y~~------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~ 79 (427)
T 2qag_B 16 TVPLAG-HVGFDS------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV 79 (427)
T ss_dssp -CCCCC-CC-CC--------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC
T ss_pred eEEEee-EEEECC------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc
Confidence 466677 888863 45 9999999999999 9999999999999999999984 33444321 1122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCch----hHHHHHHHHHHHc-CCCCC--CcccccC-----------
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGP----ALTQAVEESLKSV-NLFHG--GVADKQA----------- 382 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~----~~~~~~~~~l~~~-~L~~~--~~~~~~~----------- 382 (568)
.++.+||++|++.+++.+|+.||+.+...... ...+ ...+..+++++.. ++... ...+.++
T Consensus 80 ~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 80 QLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 34679999999998888999999876432110 0011 1234455566654 43210 0122221
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCC
Q 008362 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHS 442 (568)
Q Consensus 383 ~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~g~tiil~tH~ 442 (568)
..|+-.. +.++++|..+++++++|||+..|.+.....+.+.+++ ++ .|.+|+.+|.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 2455554 7899999999999999999999999999999999986 65 59999999875
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-16 Score=163.40 Aligned_cols=122 Identities=19% Similarity=0.194 Sum_probs=93.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEEC-CeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~-G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |.+..+ ..++.++++||+..+++..|++|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t---t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT---TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc---eEEEEEEEECCCCEecCcccHHH
Confidence 46677764 4899999999999999999999999999 999999987 765422 23467999999999999889998
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+ .+.+.+.++..+.+.++++.+++. ++.++.+.+|| ||+||+++|+++
T Consensus 281 ~-----~l~~l~~~e~~~~~~e~l~~~gl~--~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F-----GLWHLEPEQITQGFVEFHDYLGHC--KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----CCCCCCHHHHHHTSGGGGGGTTCS--SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h-----hhcCCCHHHHHHHHHHHHHHcCCc--hhcCCCcccCC-HHHHHHHHHhcC
Confidence 4 233455556667788899999996 48999999999 999999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-18 Score=182.86 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=111.0
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HH--hhcceEEEcCCCCCCCCC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DR--IYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~--~r~~ig~~~Q~~~l~~~l 339 (568)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+.... .. .|++++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 47899999999999999999999999999999999999999999988875421 12 367899999998888889
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-CCCC-EEEEeCCCCCCCH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNPK-VVYMDEPSTGLDP 417 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~-~~p~-lllLDEPtsgLD~ 417 (568)
|+++++.+... ++.. .+ +++..|+.+ ....... -.+|++.+++++. ..|. +++...|++|.|.
T Consensus 363 tV~e~l~~a~~-~~~D------vV--LIDTaGrl~--~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------VL--IADTAGRLQ--NKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp HHHHHHHHHHH-TTCS------EE--EECCCCSCC--CHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred HHHHHHHHHHh-cCCC------EE--EEeCCCccc--hhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 99999987533 2211 00 233344421 1111222 3357888888774 4563 5555558988665
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcCCHHH
Q 008362 418 ASRNNLWNVVKRA--KQGRAIILTTHSMEE 445 (568)
Q Consensus 418 ~~r~~i~~~l~~~--~~g~tiil~tH~~~e 445 (568)
. +.++.. .-+.|.++.|| +++
T Consensus 428 l------~~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 428 V------SQAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp H------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred H------HHHHHHHhhcCCCEEEEEc-CCC
Confidence 4 233333 24789999999 565
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-16 Score=167.09 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=105.2
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHL 345 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv~e~l 345 (568)
++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+-. .....++.+++++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCcccc----------
Confidence 39999999999999999999999999999999999999999999985311 1222456789998 65431
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
+ ++++..+|-.|+.++..+|+.+++|||.. .+.++
T Consensus 234 -------------------------~-------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~ 268 (361)
T 2gza_A 234 -------------------------E-------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD 268 (361)
T ss_dssp -------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH
T ss_pred -------------------------c-------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH
Confidence 0 02233477788888888999999999986 35667
Q ss_pred HHHHhcCC-ceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 426 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 426 ~l~~~~~g-~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
.++.+..| .|++.++|..+ +...+||+..|..|.
T Consensus 269 ~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 269 FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 77776654 57899999965 778899999888774
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-16 Score=162.63 Aligned_cols=144 Identities=12% Similarity=0.037 Sum_probs=102.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHhhc--ceEEEcCCCCCCCCCCHHHHHH
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRIYT--SMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~r~--~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+++ .+.+++|...++|.++++||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999985421 12233 4569999999999999999998
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
+... .+... -+++..|+.+ ..+....+|| .+++++..++.+++||.+| | +.+.+.
T Consensus 206 ~~~~-~~~d~--------vliDtaG~~~--~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~~~~~ 260 (328)
T 3e70_C 206 HAKA-RGIDV--------VLIDTAGRSE--TNRNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NAIVEQ 260 (328)
T ss_dssp HHHH-HTCSE--------EEEEECCSCC--TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------THHHHH
T ss_pred HHHh-ccchh--------hHHhhccchh--HHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HHHHHH
Confidence 6432 11100 0133344431 2333333343 4899999988899999554 4 344555
Q ss_pred HHHhc--CCceEEEEcCC
Q 008362 427 VKRAK--QGRAIILTTHS 442 (568)
Q Consensus 427 l~~~~--~g~tiil~tH~ 442 (568)
++... .+.|+|++||.
T Consensus 261 ~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 261 ARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHSCCCEEEEECG
T ss_pred HHHHHHhcCCCEEEEeCc
Confidence 55543 48999999994
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-18 Score=184.65 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=117.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-CCCcHHHhhcceEEEcCCC---------
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVCPQED--------- 333 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-i~~~~~~~r~~ig~~~Q~~--------- 333 (568)
..+++++++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+ +.... +..+++..|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHH
Confidence 568899999999999999999999999999999999999999999999865 22110 12344444332
Q ss_pred -------------CCCCCCCHHHHHHHHhhhc-CCC------chhHHHHHHHHHHH-cCCCCC--Cccc---ccCCCCCh
Q 008362 334 -------------LLWETLTGREHLLFYGRLK-NLK------GPALTQAVEESLKS-VNLFHG--GVAD---KQAGKYSG 387 (568)
Q Consensus 334 -------------~l~~~lTv~e~l~~~~~l~-~~~------~~~~~~~~~~~l~~-~~L~~~--~~~~---~~~~~LSg 387 (568)
.++..++..|++.+..... |.. .....+.++++... +++... +..+ .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 2334567777666554433 311 11222222222211 222210 0112 33456899
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEE--EcCCHHHHHHhCC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIIL--TTHSMEEAEALCD 451 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil--~tH~~~e~~~l~d 451 (568)
|||||.++|. + | |+||||..++.+++.+.+.. +++|+++ +||++++++..|+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999887652 1 7 99999999998888887764 5889985 9999999998884
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-16 Score=163.60 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=90.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhh-cceEEEcCCCCCC-----CCCCHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDLLW-----ETLTGRE 343 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r-~~ig~~~Q~~~l~-----~~lTv~e 343 (568)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.......+ +.+||++|.+.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45579999999999999999999999 99999999999 9988865433333 3689999998653 67899 8
Q ss_pred HH--HHH------hhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 344 HL--LFY------GRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 344 ~l--~~~------~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
++ .|. ++.++ ...++...+++++++.++|.+ ...+++++.|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC-ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH-HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 87 332 12333 233444567899999999962 3678999999999999999986
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=151.11 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=69.9
Q ss_pred ccCCCCChhHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 380 KQAGKYSGGMKRRL------SVAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 380 ~~~~~LSgG~kqrl------~la~Al~~~-p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
+++.+||||||||+ ++|+|++++ |+++||||||+|||+..++.+++.|++..++.+||++||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 999999999999999999999999998766679999999986 6789999
Q ss_pred EEEEE
Q 008362 453 LGIFV 457 (568)
Q Consensus 453 i~il~ 457 (568)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-17 Score=175.44 Aligned_cols=168 Identities=11% Similarity=0.104 Sum_probs=127.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC------------CCCCCceEEEECCeeCCCcHH--Hhhcce---EEEcCCCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG------------ITRTTSGTAYVQGLDIRTDMD--RIYTSM---GVCPQEDLL 335 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G------------l~~p~~G~i~i~G~~i~~~~~--~~r~~i---g~~~Q~~~l 335 (568)
.+++|+.+||+|+||||||||+|+|+| ...|+.|.+.+.|.++....+ .-++.+ .++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 667999999999854421111 112223 477888888
Q ss_pred CCCCCHHHHH--HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CEEEEeCC
Q 008362 336 WETLTGREHL--LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEP 411 (568)
Q Consensus 336 ~~~lTv~e~l--~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~lllLDEP 411 (568)
.+..+..|++ .+...++... .++..++.. .+..+..+||++ +| ++.++|||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~----~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF----DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC----CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc----ccceeeeecccc------------Ccchhhhhchhh
Confidence 8888877766 5555554321 123333332 245666677764 99 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEE-EEECC-EEEeecCH
Q 008362 412 STGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLG-IFVDG-SLQCIGNP 467 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~-il~~G-~l~~~g~~ 467 (568)
+.++|+..+++.|+.+++. . .|+||+ +|++++++.+||++. +|.+| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 5 477764 999999999999998 99999 88776654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-15 Score=141.90 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=77.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
+++++|+.++|.||||+|||||+++++|...|++|... .| +++.+.+...
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-----------------~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-----------------YF----------FDTKDLIFRL--- 82 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-----------------CE----------EEHHHHHHHH---
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-----------------EE----------EEHHHHHHHH---
Confidence 45567999999999999999999999998876666310 01 2333332211
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHh
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRA 430 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-gLD~~~r~~i~~~l~~~ 430 (568)
......-.. . -+...+.+|++|+||||++ ++|+..++.+.+++.+.
T Consensus 83 ------------~~~~~~~~~------~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 83 ------------KHLMDEGKD------T---------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYR 129 (180)
T ss_dssp ------------HHHHHHTCC------S---------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHhcCchH------H---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH
Confidence 111111000 0 0112234999999999985 99999999999999875
Q ss_pred -cCCceEEEEcCCHHHH
Q 008362 431 -KQGRAIILTTHSMEEA 446 (568)
Q Consensus 431 -~~g~tiil~tH~~~e~ 446 (568)
.+|+++|+|||...+.
T Consensus 130 ~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 130 YNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTTCEEEEECCCCSCC
T ss_pred HHcCCCEEEEcCCChhH
Confidence 5799999999987543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-14 Score=149.03 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=79.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-
Q 008362 280 FGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP- 357 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~- 357 (568)
+.|.||||+||||++++++| +..|+.|++.++|.+...... .+..+++++|.+.+.-..+ + .+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPS--D--------MGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC--------------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHh--h--------cCCcchH
Confidence 88999999999999999999 899999999999987653322 2567899998765321111 0 011111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEE
Q 008362 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 437 (568)
Q Consensus 358 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tii 437 (568)
..++.++++.+..++. ... +||| +.++|+++++|||++ ||+.++..+.+.+.+..++.++|
T Consensus 108 ~~~~~i~~~~~~~~~~------~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVD------FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEE
T ss_pred HHHHHHHHHHHhcccc------ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEE
Confidence 2223333333333332 111 5676 788999999999999 99999999999999877789999
Q ss_pred EEcCCHHH
Q 008362 438 LTTHSMEE 445 (568)
Q Consensus 438 l~tH~~~e 445 (568)
++||+.+.
T Consensus 169 l~t~~~~~ 176 (354)
T 1sxj_E 169 MVCDSMSP 176 (354)
T ss_dssp EEESCSCS
T ss_pred EEeCCHHH
Confidence 99999764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-17 Score=173.37 Aligned_cols=175 Identities=20% Similarity=0.221 Sum_probs=122.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCC-------cEEEEEcCCCCcHHHHHHHHhCCC----CCCceEEEECCee
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSG-------ECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLD 314 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~G-------ei~~LlG~NGaGKTTll~~l~Gl~----~p~~G~i~i~G~~ 314 (568)
++.+++++.||+ ..+++++++.+++| +.++|.||||+|||||+++|+|.+ .|++|.+..+|.+
T Consensus 19 lr~~~l~~~~g~------~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 19 LRPKSLDEFIGQ------ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TSCSSGGGCCSC------HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred cCCccHHHccCc------HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 444566667763 46899999999876 899999999999999999999988 7788888777666
Q ss_pred CCCcHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 315 IRTDMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 315 i~~~~~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
+....... ++.+++++|.+.+.+ ++.|++.......+.. .....+.++..++.+++. .+++++..||+|+
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li---~at~~~~~Ls~~l 167 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV---GATTRSGLLSSPL 167 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEE---EEESCGGGSCHHH
T ss_pred HHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE---EecCCcccCCHHH
Confidence 53222222 457999999888765 7888885433322211 112234455566666663 2677889999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCE
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dr 452 (568)
|||+.++ .+|||..+.++.+++++.. .+ ++|+.+.++.+|++
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 9998654 7888889999999998743 24 37999999988876
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-15 Score=134.64 Aligned_cols=92 Identities=16% Similarity=0.335 Sum_probs=71.7
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--EEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
.+++++ +|+.++|+||||+|||||+++++|...+ +| .+++++.++...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC------------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH------------------------
Confidence 355665 8999999999999999999999998877 46 555555432211
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
+++.+|+++++|||++ +|+..++.
T Consensus 79 -------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~ 102 (149)
T 2kjq_A 79 -------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQAL 102 (149)
T ss_dssp -------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHH
T ss_pred -------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHH
Confidence 2345799999999998 66666999
Q ss_pred HHHHHHHh-cCCce-EEEEcCC
Q 008362 423 LWNVVKRA-KQGRA-IILTTHS 442 (568)
Q Consensus 423 i~~~l~~~-~~g~t-iil~tH~ 442 (568)
+++++.+. .+|++ +|++||.
T Consensus 103 l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 103 LFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHcCCcEEEEECCC
Confidence 99999875 45788 8999984
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-17 Score=174.10 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=105.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----H
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----D 320 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~ 320 (568)
+.++++.+.|+ ...+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... .
T Consensus 144 ~~l~~Lg~~~~------~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~ 215 (418)
T 1p9r_A 144 LDLHSLGMTAH------NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQT 215 (418)
T ss_dssp CCGGGSCCCHH------HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEE
T ss_pred CCHHHcCCCHH------HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceE
Confidence 45566666664 35588888 53 899999999999999999999999999999999999998774321 1
Q ss_pred HhhcceEEEc---------CCCCC--CCC----CCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCccccc
Q 008362 321 RIYTSMGVCP---------QEDLL--WET----LTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQ 381 (568)
Q Consensus 321 ~~r~~ig~~~---------Q~~~l--~~~----lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 381 (568)
.+++.+|+.+ |++.+ ++. .|+.+++.+...-+ .+......+.++ .|..+++.+ . ..
T Consensus 216 ~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~--~--~~ 290 (418)
T 1p9r_A 216 QVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEP--F--LI 290 (418)
T ss_dssp ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCH--H--HH
T ss_pred EEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcH--H--HH
Confidence 2344566655 88765 343 68999988753211 011112223333 567788852 2 47
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEE
Q 008362 382 AGKYSGGMKRRLSVAISLIGNPKVVYM 408 (568)
Q Consensus 382 ~~~LSgG~kqrl~la~Al~~~p~lllL 408 (568)
+.+|||||+|| ||++++.+|++..-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 88999999999 99999999998763
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-16 Score=147.40 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCC-c---HHHhh-cceE----EEcCCCCCCCCCCHHHHH
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT-D---MDRIY-TSMG----VCPQEDLLWETLTGREHL 345 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~-~---~~~~r-~~ig----~~~Q~~~l~~~lTv~e~l 345 (568)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.. + .+.+| +.+| +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999999998 8999999988543 1 34555 4677 889987665 000
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHH-c-CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEE-------EEeCCCCC--
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKS-V-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV-------YMDEPSTG-- 414 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ll-------lLDEPtsg-- 414 (568)
+ ..+....+++.++. + +++ ..-...||||||||++||||++++|++. .=|.|..+
T Consensus 77 -------~--~~~~~a~l~~~i~~~l~g~d-----t~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -------V--SEEEGNDLDWIYERYLSDYD-----LVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -------C--CHHHHTCHHHHHHHHTTTCS-----EEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -------C--ChhhhhCHHHHHHhhCCCCC-----EEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 0 01111134445444 3 332 1222349999999999999999999873 22444322
Q ss_pred -CCHHHHHHHHHHHHH-hcCC
Q 008362 415 -LDPASRNNLWNVVKR-AKQG 433 (568)
Q Consensus 415 -LD~~~r~~i~~~l~~-~~~g 433 (568)
+|......+.+.|.+ .++|
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC-
T ss_pred ccCcccHHHHHHHHHHHHhcc
Confidence 233344566666644 4443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-16 Score=159.25 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=104.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhCCCC--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLAL-------------------PSGECFGMLGPNGAGKTTFISMMIGITR-- 302 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i-------------------~~Gei~~LlG~NGaGKTTll~~l~Gl~~-- 302 (568)
.+|+++||+|.|+ ++++++++.+ .+|+++||+||||||||||+++|+|+++
T Consensus 36 ~~i~~~~v~~~y~--------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TTCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred cccchHhHHHHHH--------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3688999999994 5899999988 9999999999999999999999999988
Q ss_pred CCceEEEE---CCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 008362 303 TTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379 (568)
Q Consensus 303 p~~G~i~i---~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 379 (568)
|++|+|.+ +|.... ...++.+|++ |...+++.+|+.+++.+...++.... .+ .
T Consensus 108 ~~~G~i~vi~~d~~~~~---~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~i------~ 163 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP---NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------NV------T 163 (308)
T ss_dssp TTCCCEEEEEGGGGBCC---HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------CE------E
T ss_pred CCCCeEEEEecCCccCc---HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------ce------e
Confidence 99999999 887642 2345668898 88888888999999998776653110 00 1
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 008362 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~ 417 (568)
.+.-..+.+ +|+..+.+.+.+|+++|+|.|....|+
T Consensus 164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111111111 233222345678999999999998874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-15 Score=153.88 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=77.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhh-cceEEEcCCCC-------------
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDL------------- 334 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r-~~ig~~~Q~~~------------- 334 (568)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.......+ +.+|+++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 455689999999999999999999999999999999999 9988865332222 36899999975
Q ss_pred ---CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 335 ---LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 335 ---l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
+++++|+ ||+.|.... ...+...++.++|+.++|.. +..+++++.||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAE-SRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCH-HHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCH-HHHHHHHHHHHH
Confidence 5888999 998874321 12334467899999999952 467888888885
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-14 Score=150.00 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=93.7
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCCcHHHHHH--HHhCCCCCCce-----EEEECCeeCCCc--HHHhhcceEEEcCCCCC
Q 008362 266 AVNGL-SLALPSGECFGMLGPNGAGKTTFIS--MMIGITRTTSG-----TAYVQGLDIRTD--MDRIYTSMGVCPQEDLL 335 (568)
Q Consensus 266 al~~i-sl~i~~Gei~~LlG~NGaGKTTll~--~l~Gl~~p~~G-----~i~i~G~~i~~~--~~~~r~~ig~~~Q~~~l 335 (568)
.||.+ .=.+++|++++|+||||||||||++ ++.++.+++.| .+++++++.... ...+++++|+.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 44442 2378999999999999999999999 45677777544 888888763221 1222344554433
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHHHHHHHHHHH--cCCCCEEEEeCCC
Q 008362 336 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMKRRLSVAISL--IGNPKVVYMDEPS 412 (568)
Q Consensus 336 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~kqrl~la~Al--~~~p~lllLDEPt 412 (568)
++.+|+.+.. ..++ .+.+.+.-++++ ..+|+++++|||+
T Consensus 242 ----~vleni~~~~----------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 242 ----DALNNVAYAR----------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp ----HHHHTEEEEE----------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred ----hHhhcEEEec----------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2333322110 0111 111222222222 2579999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHh-c-CCceEEEEcCCH-------------------HHHHHhCCEEEEEECC
Q 008362 413 TGLDPASR------------NNLWNVVKRA-K-QGRAIILTTHSM-------------------EEAEALCDRLGIFVDG 459 (568)
Q Consensus 413 sgLD~~~r------------~~i~~~l~~~-~-~g~tiil~tH~~-------------------~e~~~l~dri~il~~G 459 (568)
+.+|+... +++.+.|+++ + .|.|||+++|.. ..++..||.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997532 4566667664 3 399999999983 2246778988888876
Q ss_pred E
Q 008362 460 S 460 (568)
Q Consensus 460 ~ 460 (568)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-14 Score=153.47 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=101.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
-++++|+++.|++++|+|+||||||||+++|+|..+ .+.+++..+ +...+|++++++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999843 344444322 1234566655430 0011111100
Q ss_pred H---HhhhcCCCchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 347 F---YGRLKNLKGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 347 ~---~~~l~~~~~~~~--~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
+ .....++..... .++++.++..+++. ++++.+||+|++|++.+|++|+..|.++++ +++|+..+.
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~ 285 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEE 285 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHH
Confidence 0 001111111100 01122233334441 567788999999999999999999999999 999998773
Q ss_pred HHHHHHHHhc-CCceEEE-EcCCHHHHHHhCCEE
Q 008362 422 NLWNVVKRAK-QGRAIIL-TTHSMEEAEALCDRL 453 (568)
Q Consensus 422 ~i~~~l~~~~-~g~tiil-~tH~~~e~~~l~dri 453 (568)
.+.++.+.++ .+.+++. |+|.-+.++.+++.+
T Consensus 286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3333333443 4666654 556666666666554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-15 Score=148.99 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh------
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG------ 349 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~------ 349 (568)
++.++||.|++|||||||.+.|.+++.+. | . . ++.+.+++|++.+++. +.++|+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 57899999999999999999999998763 2 0 1 3445666999988875 8889987742
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCC------CCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLF------HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
..+|.+.....+.+.+.++.+.-. ..-....+...+||||+||+++|++...+|+|+|+|||++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 123334333344556666665432 001134556789999999999973333399999999999999985
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-14 Score=148.26 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=72.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhhcceEEEcCCCCCCC----CCCHHHH
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWE----TLTGREH 344 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r~~ig~~~Q~~~l~~----~lTv~e~ 344 (568)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+.+++.....+..+|+++|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999999 888775543222333899999987765 6899 88
Q ss_pred HH-HHhhh---------cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 345 LL-FYGRL---------KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 345 l~-~~~~l---------~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
+. .+..+ ++ ....+....++++++.++|.+ .+.+...+++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~--~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ--YRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH--HHHHHHHHHHHHHhhc
Confidence 83 22211 22 122333457899999999962 4556666777788773
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-16 Score=159.17 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=107.9
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCC-CCCCCCCH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~-~l~~~lTv 341 (568)
..+++++++.+++| ++|.||||+|||||+|+|+|...+ |.+.++|.++... ....++.+++++|.. ...+.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46899999999999 999999999999999999999877 7999999887542 233456688888874 45566666
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC--------
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-------- 413 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-------- 413 (568)
.|++...+..++. ... + .+. ...++...+|||||+||+.+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~------~~~----~--~~~--~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 109 FDEVDALCPRRSD------RET----G--ASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EETCTTTCC---------------------CT--THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred eehhhhhhcccCC------Ccc----h--HHH--HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 6776543321110 000 0 121 3567788899999999999999999999975 99864
Q ss_pred ----CCCHHHHHHHHHHHH
Q 008362 414 ----GLDPASRNNLWNVVK 428 (568)
Q Consensus 414 ----gLD~~~r~~i~~~l~ 428 (568)
--|...|+++++.+.
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 347888888888764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-16 Score=152.38 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=88.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC-------------CCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR-------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLT 340 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~-------------p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lT 340 (568)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++.. ..+..++.+ +|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 5799999999999999999999999875 67776 47766532 233444433 45443322 23
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH----HHHHHH-HHcCCCCEEEEeCCCCCC
Q 008362 341 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR----RLSVAI-SLIGNPKVVYMDEPSTGL 415 (568)
Q Consensus 341 v~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq----rl~la~-Al~~~p~lllLDEPtsgL 415 (568)
+.+|+ +|.+. +.++++++.-... ..+.. + .|-++ ++ .|+ +++.+|++.+|||||+++
T Consensus 76 ~~~n~------~g~~~----~~i~~~~~~~~~~---~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 76 FSGNL------YGTSK----EAVRAVQAMNRIC---VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp ETTEE------EEEEH----HHHHHHHHTTCEE---EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcc------CCCCH----HHHHHHHHcCCcE---EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 33333 23222 2344444431110 00100 0 11111 12 345 677788888888899999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 416 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 416 D~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
|..+.+.+.+.|.+..++ +..+|. . ..+|+|++++
T Consensus 138 d~~~e~~i~~~l~~~~~~---~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 138 NTETEESLAKRLAAARTD---MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp TCSCHHHHHHHHHHHHHH---TTGGGS--T--TTCSEEEECS
T ss_pred CCCCHHHHHHHHHHHHHH---HHHhhc--c--CCceEEEECC
Confidence 999988898888765433 233452 1 4689987765
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-13 Score=129.73 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=81.7
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-HHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+.|.++.... ...+..++|+||++.+++.+++.+++..+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999964 5788887765422 233567999999988888777777665444
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCC
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEP 411 (568)
...+.......+.+++.++.-.. -..+ +..+-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~---vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRD---VLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCE---EEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCe---EEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 33332211222345555543111 0112 334445555667778888988887
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-12 Score=128.09 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=94.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~ 354 (568)
.+|++++++|||||||||+++.|++.+.+++| ++++++.++.. ..++.|++..++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----------------~~V~lv~~D~~---r~~a~eqL~~~~~~--- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----------------KKIAFITTDTY---RIAAVEQLKTYAEL--- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----------------CCEEEEECCCS---STTHHHHHHHHHTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CEEEEEecCcc---cchHHHHHHHHHHh---
Confidence 47999999999999999999999999988778 13455555542 24566666654432
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---
Q 008362 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--- 431 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--- 431 (568)
.|+.. ... .+ +..-+.+++ .+.+|+++|+| |+|+|+..+..++++.+-..
T Consensus 160 ---------------~gl~~--~~~-----~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 160 ---------------LQAPL--EVC-----YT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ---------------TTCCC--CBC-----SS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ---------------cCCCe--Eec-----CC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 23321 111 12 222344444 45999999999 99999988877777655433
Q ss_pred C-CceEEE-EcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 432 Q-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 432 ~-g~tiil-~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
. +..+++ +||..++++++|+++..+..+.++.
T Consensus 213 ~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 213 SIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2 345555 5999999999999876555555554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-13 Score=130.25 Aligned_cols=172 Identities=16% Similarity=0.080 Sum_probs=93.7
Q ss_pred ceeeee-EEEEeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 265 VAVNGL-SLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 265 ~al~~i-sl~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
..||++ .-.+++|++++|.|||||||||++ +++.+..+...+.+++.+........+..+.+|+.+|+....+.+++.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 89 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMV 89 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEE
Confidence 456666 667999999999999999999995 555555555556666665432211112223445544321000011110
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCC--CHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL--DPA 418 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgL--D~~ 418 (568)
+. ... .++... ..+.....-+....+....++.++ .+|+++++|||++.+ |+.
T Consensus 90 ~~----------~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~ 146 (247)
T 2dr3_A 90 DA----------FTA-----------GIGKSK--EYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPA 146 (247)
T ss_dssp EC----------STT-----------TTCC----CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGG
T ss_pred ec----------chh-----------hccccc--ccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHH
Confidence 00 000 000000 000000011112222233333333 579999999999988 664
Q ss_pred HHHHHHHHHHH-h-cCCceEEEEcCCHHH--------HHHhCCEEEEEECC
Q 008362 419 SRNNLWNVVKR-A-KQGRAIILTTHSMEE--------AEALCDRLGIFVDG 459 (568)
Q Consensus 419 ~r~~i~~~l~~-~-~~g~tiil~tH~~~e--------~~~l~dri~il~~G 459 (568)
.+++....+.+ . +.|.||++++|...+ ++..||.++.|+..
T Consensus 147 ~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 147 MARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp GHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 44454444444 4 358999999999876 56889999999753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-14 Score=138.67 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=90.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
.++|+++||+||||||||||+++|+|+++|+ .|.|.++|..+.... +..++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~---~~~~~~~~~------------------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL---LEPRGLLPR------------------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH---HGGGTCGGG-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH---HHHhccccc-------------------
Confidence 4689999999999999999999999999864 666666665543211 111111110
Q ss_pred hcCCCchhHHHHHHHHHHHc----CCCCCCcccccCCCCChhHHHHHHHH-HHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSV----NLFHGGVADKQAGKYSGGMKRRLSVA-ISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~----~L~~~~~~~~~~~~LSgG~kqrl~la-~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
++.+.........+.+..+ ++.. .. ......+|+||+||+++| ++++.++.++++|||. |.
T Consensus 77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~-p~-~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~ 142 (208)
T 3c8u_A 77 -KGAPETFDFEGFQRLCHALKHQERVIY-PL-FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR 142 (208)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHHCSCEEE-EE-EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG
T ss_pred -CCCCchhhHHHHHHHHHHHhcCCceec-cc-CCccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH
Confidence 0111000011111222211 1110 11 223345799999999887 7777777777788873 21
Q ss_pred HHHHhcCCceEEEEcCCHHH-HHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 426 VVKRAKQGRAIILTTHSMEE-AEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 426 ~l~~~~~g~tiil~tH~~~e-~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+.. .--.+++++++.+. ..+++.|. +..|+ +.+++.+++
T Consensus 143 ~l~~--~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 143 DLTA--IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGG--TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHH--hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1211 12367888888876 66777762 34454 677776654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-16 Score=153.44 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=73.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCceEEEECCeeCCCcH--HHhhcceEEEcCCCCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDM--DRIYTSMGVCPQEDLLWETLT 340 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~~G~i~i~G~~i~~~~--~~~r~~ig~~~Q~~~l~~~lT 340 (568)
.+..+++||++++|+++||+||||||||||+++|+ |+.++. ..+.+..+.. ...+..++|.+++...++.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence 45789999999999999999999999999999999 998541 2333221110 001123446666554444333
Q ss_pred HHHHHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHH-HHHcCCCCEEEEeCCCCC
Q 008362 341 GREHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVA-ISLIGNPKVVYMDEPSTG 414 (568)
Q Consensus 341 v~e~l~~----~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl-~la-~Al~~~p~lllLDEPtsg 414 (568)
..+++.. ....++.+.+ .+++.++.-.. -..+-.+.. ....++++ .-+ ..++..|+..++||+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~---vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVS---TLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECT----THHHHHHHTCE---EEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred hcCceehhhhhccccCCCCHH----HHHHHHHcCCe---EEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 3333321 1122222222 23334433111 011110000 01113332 111 223456667777889999
Q ss_pred CCHHHHHHHHHHHHHh----c--CCceEEEEcCCHHHHHHhCCEEE
Q 008362 415 LDPASRNNLWNVVKRA----K--QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 415 LD~~~r~~i~~~l~~~----~--~g~tiil~tH~~~e~~~l~dri~ 454 (568)
.|..+...+.+.+++. . +...+++++|+++++..-+++++
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 9888777777666532 1 24577778888888776665554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=122.34 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=97.6
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcce
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~i 326 (568)
.++++++.|++ .. ++++|+ +|++++++|+||+||||+.+.|+|.+.+..|+|.+.+.|+......
T Consensus 78 ~~~~l~~~~~~------~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~----- 142 (295)
T 1ls1_A 78 VYEALKEALGG------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR----- 142 (295)
T ss_dssp HHHHHHHHTTS------SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-----
T ss_pred HHHHHHHHHCC------CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-----
Confidence 34566677753 11 678888 9999999999999999999999999999999999999887532111
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEE
Q 008362 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 406 (568)
Q Consensus 327 g~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ll 406 (568)
+.+. ...+..++. ..... ...+-.+.+|.+++.+...+++++
T Consensus 143 ----------------~ql~------------------~~~~~~~l~---~~~~~-~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 143 ----------------EQLR------------------LLGEKVGVP---VLEVM-DGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ----------------HHHH------------------HHHHHHTCC---EEECC-TTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ----------------HHHH------------------HhcccCCeE---EEEcC-CCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0110 012234553 11100 012334557889999888999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHhcCCceEE
Q 008362 407 YMDEP-STGLDPASRNNLWNVVKRAKQGRAII 437 (568)
Q Consensus 407 lLDEP-tsgLD~~~r~~i~~~l~~~~~g~tii 437 (568)
|+||| +.|+|+....++.++.+......+++
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 99999 99999999999888877655444443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.7e-12 Score=127.81 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=82.6
Q ss_pred eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 270 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
++++.++|++++++|||||||||+++.|+|.+.++.|+|.+.+.|..... ..|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HHHH-----
Confidence 45566789999999999999999999999999999999999887753211 0111
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH---HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL---SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl---~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
+..+++..++. . ....|+|+.+++ ++++|+..+|+++|+|||.. +.....+++.
T Consensus 151 -------------L~~~~~~~gl~---~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~e 207 (306)
T 1vma_A 151 -------------LKIWGERVGAT---V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEE 207 (306)
T ss_dssp -------------HHHHHHHHTCE---E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHH
T ss_pred -------------HHHHHHHcCCc---E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHH
Confidence 22344556663 2 235689999999 99999999999999999964 3344555555
Q ss_pred HHH
Q 008362 427 VKR 429 (568)
Q Consensus 427 l~~ 429 (568)
+++
T Consensus 208 L~~ 210 (306)
T 1vma_A 208 LRK 210 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-12 Score=134.77 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=49.6
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
..+++|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3589999999999 999999999999999999999999999999999999875
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-11 Score=126.83 Aligned_cols=175 Identities=11% Similarity=0.092 Sum_probs=114.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCCcHHHhhcc-----eEEEcCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTS-----MGVCPQEDLLWE 337 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~~~~~~r~~-----ig~~~Q~~~l~~ 337 (568)
...|+++...+++|+++.|.|++|+||||++..+++...+..| .|.+.+.+... .+++++ .|+-+|
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHHTCCHH------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHcCCCHH------
Confidence 4689999988999999999999999999999999987766445 56665544322 222211 121111
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL 415 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgL 415 (568)
.+. -..+. .+..+++.++++.++.. ...-.....+|.++.+ +.+++++ .+|+++++|+++...
T Consensus 262 ------~l~----~g~l~-~~~~~~~~~a~~~l~~~--~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 ------NLR----TGKLT-PEDWGKLTMAMGSLSNA--GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHH----TSCCC-HHHHHHHHHHHHHHHSS--CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------HHh----cCCCC-HHHHHHHHHHHHHHhcC--CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 111 01122 22234455555555433 1333345689999987 4566665 789999999999877
Q ss_pred CH--------HHHHHHHHHHHHh-cC-CceEEEEcC---------C--HH--------HHHHhCCEEEEEECCEE
Q 008362 416 DP--------ASRNNLWNVVKRA-KQ-GRAIILTTH---------S--ME--------EAEALCDRLGIFVDGSL 461 (568)
Q Consensus 416 D~--------~~r~~i~~~l~~~-~~-g~tiil~tH---------~--~~--------e~~~l~dri~il~~G~l 461 (568)
++ ....++.+.|+.+ ++ |.+||+++| + +. .++..||.|++|..++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 2234555566664 33 899999999 2 22 57889999999998765
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=118.59 Aligned_cols=144 Identities=17% Similarity=0.247 Sum_probs=84.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE-EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~-i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
.+++|+++.|.||||+|||||...++.......|. ++++.... .... ..+++|+-+|+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~~-~a~~lG~~~~~------------------- 115 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDPE-YAKKLGVDTDS------------------- 115 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH-HHHHTTCCGGG-------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCHH-HHHHcCCCHHH-------------------
Confidence 68899999999999999999987777544333333 33333211 0100 01111111110
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCCEEEEeCCCCCC----------CH--
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTGL----------DP-- 417 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~--~p~lllLDEPtsgL----------D~-- 417 (568)
+-+ .. ..+. .+-+.++++++. +|+++++|||++.+ |+
T Consensus 116 ------------------l~i------~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 116 ------------------LLV------SQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp ------------------CEE------EC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred ------------------eEE------ec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 001 00 1122 234557777764 49999999999998 33
Q ss_pred -HHHHHHHHHHHH----hc-CCceEEEEcCCHHH----------------HHHhCCEEEEEECCEEEeecC
Q 008362 418 -ASRNNLWNVVKR----AK-QGRAIILTTHSMEE----------------AEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 418 -~~r~~i~~~l~~----~~-~g~tiil~tH~~~e----------------~~~l~dri~il~~G~l~~~g~ 466 (568)
...+.+.+.+++ ++ .|.|||+++|..+. ++.+||.++.++.++....|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 222344444443 23 48999999996542 567899999998887665554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-12 Score=136.58 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=110.3
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCC-CCCCCCCHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTGREH 344 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~-~l~~~lTv~e~ 344 (568)
.+++++.++..+.+.|++||||||+++.|.+ +.+++.|++.+.+.|.... .... .. +|.-- .... ...+-
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~~---lPhl~~~Vvt--d~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-EG---IPHLLTEVVT--DMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-TT---CTTBSSSCBC--SHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-cc---CCcccceeec--CHHHH
Confidence 4678888999999999999999999999876 6677889998888886531 1111 11 11100 0111 12222
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc---ccCCCCChhHHHHH----------HHHHHHcCCCC-EEEEeC
Q 008362 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD---KQAGKYSGGMKRRL----------SVAISLIGNPK-VVYMDE 410 (568)
Q Consensus 345 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~~~LSgG~kqrl----------~la~Al~~~p~-lllLDE 410 (568)
...... ..++.+++. ++++..|+.+ ..+ +....+|+||+|+. .+|+++...|. ++++||
T Consensus 233 ~~~L~~----~~~EmerR~-~ll~~~Gv~~--i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE 305 (512)
T 2ius_A 233 ANALRW----CVNEMERRY-KLMSALGVRN--LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE 305 (512)
T ss_dssp HHHHHH----HHHHHHHHH-HHHHHTTCSS--HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET
T ss_pred HHHHHH----HHHHHHHHH-HHHHHcCCcc--HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC
Confidence 221111 124555554 6788888752 322 22346889988753 35566778898 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cC-CceEEEEcCCHH-------HHHHhCCEEEEE
Q 008362 411 PSTGLDPASRNNLWNVVKRA----KQ-GRAIILTTHSME-------EAEALCDRLGIF 456 (568)
Q Consensus 411 PtsgLD~~~r~~i~~~l~~~----~~-g~tiil~tH~~~-------e~~~l~dri~il 456 (568)
+++-+|.. ...+.+.+.++ +. |.++|++||.++ ....+.+||++-
T Consensus 306 ~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 306 FADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 99988843 34455555432 32 889999999987 456677887653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7e-13 Score=131.69 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=97.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCC-CCCCCCCH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQED-LLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~-~l~~~lTv 341 (568)
..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++.. .....++.+++++|.. ...+.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999 89999999999999999999875 7899999876532 1112234567778764 34566777
Q ss_pred HHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC----
Q 008362 342 REHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST---- 413 (568)
Q Consensus 342 ~e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts---- 413 (568)
.|++...+..++. ..++..+.+.+++ ..|||||+||+.+++|+..+|++ +|++.-
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~ll---------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~r 176 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQLL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGR 176 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHHH---------------HHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTS
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHHH---------------HHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCc
Confidence 7777544332211 1122222233322 35789999999999999999987 676542
Q ss_pred --------CCCHHHHHHHHHHH
Q 008362 414 --------GLDPASRNNLWNVV 427 (568)
Q Consensus 414 --------gLD~~~r~~i~~~l 427 (568)
--|...|+++++..
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH
T ss_pred CCeEEeeCCcCHHHHHHHHHHH
Confidence 23666777766543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-11 Score=121.59 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=52.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------ 318 (568)
.|+++|+.+.|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...
T Consensus 9 ~l~l~~~~~~~~-------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRD 74 (227)
T ss_dssp EEEEEEETTEEE-------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------------
T ss_pred EEEEEeeecccC-------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccc
Confidence 578888876553 1 566666 89999999999999999999999999999999999887321
Q ss_pred ---HHHhhcceEEEcCC
Q 008362 319 ---MDRIYTSMGVCPQE 332 (568)
Q Consensus 319 ---~~~~r~~ig~~~Q~ 332 (568)
....+..++|++|.
T Consensus 75 ~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 75 KGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp --CGGGBCSSEEEEEEE
T ss_pred cchhhHhhcCcEEEEEe
Confidence 11245789999984
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-11 Score=138.77 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=107.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eEEEECCeeCCCcHHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-G~i~i~G~~i~~~~~~~r~~ig 327 (568)
++++..|| ...+++++++.+.+|+.++|+||||+|||||+++|+|+.++.. |.+.+++.+... ....++
T Consensus 38 ~~l~~i~G------~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~ 107 (604)
T 3k1j_A 38 KLIDQVIG------QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIK 107 (604)
T ss_dssp SHHHHCCS------CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEE
T ss_pred cccceEEC------chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEE
Confidence 34444565 3579999999999999999999999999999999999999887 888888866532 234588
Q ss_pred EEcCCC----------------------CCCCCCCHHHHHHHHhh-hcCCCc-hhHHHHHHHHHHHcCCCCCCcccccCC
Q 008362 328 VCPQED----------------------LLWETLTGREHLLFYGR-LKNLKG-PALTQAVEESLKSVNLFHGGVADKQAG 383 (568)
Q Consensus 328 ~~~Q~~----------------------~l~~~lTv~e~l~~~~~-l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~ 383 (568)
+|||.. ..+..+++.+|+..... ..+.+. .+......++ +|.. +......+
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L---~G~~--~~~~~~~g 182 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGAL---LGDV--RHDPFQSG 182 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHH---HCEE--CCCCC---
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhc---CceE--EechhhcC
Confidence 888753 11112222222211000 000000 0000011222 2321 12233446
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
.+|+|++|++..++....++.+|+|||... |+|..+..+.+.|.+
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 799999999999999999999999999988 899999999998875
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-13 Score=135.17 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig 327 (568)
+++.+.|+ ...+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++... ....++.++
T Consensus 53 ~~l~~~~~------~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 53 KEIVEFLK------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHH------CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHH------CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 44555564 246899999999999 89999999999999999999885 79999998775321 122334577
Q ss_pred EEcCCCC-CCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 328 VCPQEDL-LWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 328 ~~~Q~~~-l~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+++|... ..+.+++.|++...+..++. ..++..+.+.++ ..+|||||+||+.+++|+..+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l---------------l~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL---------------LVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH---------------HHHHTTCCTTCCEEEEEEESC
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH---------------HHHHhCCCCCCCEEEEEecCC
Confidence 7888643 55667788888544322211 111222222222 235889999999999999999
Q ss_pred CCE
Q 008362 403 PKV 405 (568)
Q Consensus 403 p~l 405 (568)
|++
T Consensus 188 p~~ 190 (278)
T 1iy2_A 188 PDI 190 (278)
T ss_dssp TTS
T ss_pred chh
Confidence 976
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-11 Score=114.79 Aligned_cols=134 Identities=11% Similarity=0.141 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-----------CceEEEECCeeCCC---cHHHhhcceEEEcCCC----C---CCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT-----------TSGTAYVQGLDIRT---DMDRIYTSMGVCPQED----L---LWE 337 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p-----------~~G~i~i~G~~i~~---~~~~~r~~ig~~~Q~~----~---l~~ 337 (568)
.++|+|+||||||||++.++|...| ++|++.++|+++.. +....++..++++|.. . .++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6799999999999999999998765 58999999976531 1111112222332210 0 011
Q ss_pred CC--CHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 008362 338 TL--TGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414 (568)
Q Consensus 338 ~l--Tv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsg 414 (568)
.. ...+++..+. .++..... ...+..++.++++ ..-.+++...|++++.+|+++++| ||+
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl-------------~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDL-------------RHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGG-------------GGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccc-------------ccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 0112221110 00000000 0000001111122 111123467899999999999999 999
Q ss_pred CCHHHHHHHHHHHHH
Q 008362 415 LDPASRNNLWNVVKR 429 (568)
Q Consensus 415 LD~~~r~~i~~~l~~ 429 (568)
+|+.+.+++++.|.+
T Consensus 174 ld~~~v~~l~~~l~~ 188 (191)
T 1oix_A 174 LDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-11 Score=130.11 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=90.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCC-CCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~-l~~~lTv~ 342 (568)
..+++++++++++|++++|.||||||||||+++|+|. .+|++...+ ... +..+..+|++||... ++++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 467776511 111 112234778888764 44444433
Q ss_pred HHHHHHhhhcCCCc-hh--HHHHHHHHHHH---cCCC-----------CCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 343 EHLLFYGRLKNLKG-PA--LTQAVEESLKS---VNLF-----------HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 343 e~l~~~~~l~~~~~-~~--~~~~~~~~l~~---~~L~-----------~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
.++ .++... .. ....+...++- +.+. .....+.....+++|++||+..+++++..|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 221 111111 00 11223333430 0011 01234567778999999999999889999999
Q ss_pred EE-EeCCCC
Q 008362 406 VY-MDEPST 413 (568)
Q Consensus 406 ll-LDEPts 413 (568)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 88 999987
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.6e-11 Score=111.48 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
...|++++.+|++.++| ||++|+...+++++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35688999999999999 999999999999998865
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-10 Score=106.79 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=45.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
.+.+-.++-++|++++|+|||||||||++++|+|.+ |.+.++|.++.......+...|+++|+...+
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 333334667789999999999999999999999976 8999999887543322333568888864433
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-09 Score=113.82 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH---H
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR-----------TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE---H 344 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~-----------p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e---~ 344 (568)
+++|+|+||||||||++.|+|... |+.|++.++|.++. +....|++.|.+. -.+.. .
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCG----GGHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCH----HHHHHHHHH
Confidence 489999999999999999999876 67899999986642 1123455444221 11111 1
Q ss_pred HHHHhh------hcCCCc-----hhHHHHHHHHHHHcCCCCCCcc----cccCCCCChhHHHHHHHH----HHH-cCCCC
Q 008362 345 LLFYGR------LKNLKG-----PALTQAVEESLKSVNLFHGGVA----DKQAGKYSGGMKRRLSVA----ISL-IGNPK 404 (568)
Q Consensus 345 l~~~~~------l~~~~~-----~~~~~~~~~~l~~~~L~~~~~~----~~~~~~LSgG~kqrl~la----~Al-~~~p~ 404 (568)
+..... ....+. .+..+.+.+.++.+++.+ .. ..++..+|+|+++|+..+ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 111100 001111 112233566777777642 22 445677898988888877 666 44555
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
+ +|+|++|......+++.|.+
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHH
Confidence 4 89999999999999999876
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-09 Score=101.43 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
++||+|+|||||||+.++|+++ |...+++-+ +.+.+. + + + .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------~~~~~~---~-----~---------------~--~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------VAREVV---A-----K---------------D--S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------HHHHTT---C-----S---------------S--C--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------HHHHHc---c-----C---------------C--h--
Confidence 6899999999999999999983 554554321 111110 0 0 0 0
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 438 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil 438 (568)
..+.++.+.+|.. .. .+.|+.+|..++.....+|+..-.+ .+.++|..++.+++.+.... +.++|+
T Consensus 45 --~~~~~i~~~~g~~---~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~-~~~vv~ 110 (206)
T 1jjv_A 45 --PLLSKIVEHFGAQ---IL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT-APYTLF 110 (206)
T ss_dssp --HHHHHHHHHHCTT---CC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC-SSEEEE
T ss_pred --HHHHHHHHHhCHH---Hh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC-CCEEEE
Confidence 1234445555543 11 3678888999988888887644333 45678988888888776543 558999
Q ss_pred EcCCHHHH--HHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 439 TTHSMEEA--EALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 439 ~tH~~~e~--~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+|.+.|. ...||++++++ .+++...++.
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl 141 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVD-------VSPQTQLARS 141 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHH
T ss_pred EechhhhcCcHhhCCEEEEEE-------CCHHHHHHHH
Confidence 99999887 67899988874 5666666655
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-09 Score=118.35 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEE-ECCeeCCC-----------cHHHhhcceEEEcCCCCCCCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAY-VQGLDIRT-----------DMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~-i~G~~i~~-----------~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
.+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++.. +....++.+++++|+ +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~------l 438 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE------I 438 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH------H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH------H
Confidence 5789999999999999999999999999999987 785 88866521 011123446666664 1
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVN 371 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~ 371 (568)
+..+++.+.. .+.+....++++.++++.+|
T Consensus 439 ~~~~~ivi~~--~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICA--PIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEEC--CCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEe--cCCccHHHHHHHHHHHHHcC
Confidence 2222222211 11123455667788888776
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.1e-09 Score=103.00 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=52.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceEEE--------ECCeeCCC--cHHHhhcceEEEcCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAY--------VQGLDIRT--DMDRIYTSMGVCPQED 333 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~---Gl~~p~~G~i~--------i~G~~i~~--~~~~~r~~ig~~~Q~~ 333 (568)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++.. ....+++.+|+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 89988843 3556788899999854
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-08 Score=104.73 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=60.6
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHh-----hcceEEE-cCCCCC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI-----YTSMGVC-PQEDLL 335 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~-----r~~ig~~-~Q~~~l 335 (568)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.... ..+ +.+++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 46888999999999999999999999999999999999999999999885432 223 5678999 676544
Q ss_pred CCCCCHHHH
Q 008362 336 WETLTGREH 344 (568)
Q Consensus 336 ~~~lTv~e~ 344 (568)
.+..++.++
T Consensus 175 ~p~~~~~~~ 183 (320)
T 1zu4_A 175 DPASVVFDA 183 (320)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 443333333
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.6e-08 Score=111.53 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=61.5
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhc-CCceEEEE-cCCHHHHHHhCCE
Q 008362 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRAK-QGRAIILT-THSMEEAEALCDR 452 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-gLD~~~r~~i~~~l~~~~-~g~tiil~-tH~~~e~~~l~dr 452 (568)
+..+.-+|.|+.+|..++.+++.+++++|+|||.. ++|......+++.+.... +.++|++| ||+.+.+..++++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 44566789999999999999999999999999996 999888777777666554 46788884 9999888887764
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.2e-08 Score=100.10 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=51.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-EECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
.+++|+++.|.||||+|||||+..+++...+..|.+ ++++....... ..+++|+.+|+..+....++.+.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHHH
Confidence 588999999999999999999999999887777765 67665443221 3355777777654444445555443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-08 Score=92.64 Aligned_cols=137 Identities=13% Similarity=0.135 Sum_probs=84.8
Q ss_pred ee--eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe--eC-CCcHH----HhhcceEEEcCCCC--
Q 008362 266 AV--NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL--DI-RTDMD----RIYTSMGVCPQEDL-- 334 (568)
Q Consensus 266 al--~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~--~i-~~~~~----~~r~~ig~~~Q~~~-- 334 (568)
.+ +++++++.+| +++|+|||||||||++++|.+++.++.|...-.+. ++ ..... ..+..|.+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 55 7889999999 99999999999999999999998887765432221 11 11100 13356889998753
Q ss_pred CCC---CCCHHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEE
Q 008362 335 LWE---TLTGREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 407 (568)
Q Consensus 335 l~~---~lTv~e~l~~~----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lll 407 (568)
+.+ .+++...+.-. ..+.+. ....+++.++++.+++..+ ...-++.|+.+++.
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~--~~~~~~~~~~l~~~~l~~~-----~~~~~~qg~~~~l~------------- 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGR--RATRSEILDILTAAMISPD-----GYNIVLQGDITKFI------------- 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTE--EECHHHHHHHHHHTTCCTT-----CTTEECTTCTTHHH-------------
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCe--EcCHHHHHHHHHHcCCCCC-----CCEEEEcccHHHHH-------------
Confidence 111 12322211000 011111 1224568889999999641 12357888887764
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q 008362 408 MDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 408 LDEPtsgLD~~~r~~i~~~l~~ 429 (568)
-++|..|+++++.+..
T Consensus 153 ------~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 153 ------KMSPLERRLLIDDISG 168 (182)
T ss_dssp ------HSCHHHHHHHHHHHHT
T ss_pred ------hCCHHHHHHHHHHHHC
Confidence 2467888888877643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-08 Score=100.61 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=84.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~ 356 (568)
.-.++++|+||+|||||++.|+|.. +. +.+.+..+. ...++.+++... .
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~----~~~~~~~~~~~~---------------~------ 215 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTR----GINVGQFEDGYF---------------R------ 215 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSS----CEEEEEEEETTE---------------E------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeee----ceeEEEEEecCc---------------e------
Confidence 4578999999999999999999965 21 122211110 112344433211 0
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCce
Q 008362 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD-EPSTGLDPASRNNLWNVVKRAKQGRA 435 (568)
Q Consensus 357 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLD-EPtsgLD~~~r~~i~~~l~~~~~g~t 435 (568)
+..++.. ...+.+...+|+|++|++. +.+...++-++++| +|.+|+|......+++.+.+...++.
T Consensus 216 ----------~~l~Dt~--G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p 282 (357)
T 2e87_A 216 ----------YQIIDTP--GLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282 (357)
T ss_dssp ----------EEEEECT--TTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC
T ss_pred ----------EEEEeCC--CccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 1112221 1334567789999998877 66666788899999 99999999998888888876544788
Q ss_pred EEEEc--CCHHHH
Q 008362 436 IILTT--HSMEEA 446 (568)
Q Consensus 436 iil~t--H~~~e~ 446 (568)
+|++. ||+...
T Consensus 283 iilV~NK~Dl~~~ 295 (357)
T 2e87_A 283 FLVVINKIDVADE 295 (357)
T ss_dssp EEEEECCTTTCCH
T ss_pred EEEEEECcccCCh
Confidence 88877 887543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-08 Score=93.68 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G 306 (568)
+++++|++++|+|||||||||++++|+|...|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977666
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-09 Score=117.13 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=96.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCCC-CCCCCCHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTGR 342 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~~-l~~~lTv~ 342 (568)
.+++++++.+++| +.|.||||+|||||+++|+|... .|.+.++|.++... .....++++.++|... ..+.+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4788899999999 89999999999999999999874 78999999876432 1122344666777643 34555566
Q ss_pred HHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCC----
Q 008362 343 EHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG---- 414 (568)
Q Consensus 343 e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsg---- 414 (568)
|++.....-++. ..++..+.+.+++. .||||++|+..+++|...+|++ |||+..-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gRf 192 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRF 192 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTSS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHH---------------HhcccccCccEEEEEecCChhh--cCccccccccc
Confidence 666433222111 12233333444433 3678888888999999999987 8988643
Q ss_pred --------CCHHHHHHHHHH
Q 008362 415 --------LDPASRNNLWNV 426 (568)
Q Consensus 415 --------LD~~~r~~i~~~ 426 (568)
-|...|+++++.
T Consensus 193 dr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 193 DRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp CCEEECCCCCHHHHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHHH
Confidence 466677776643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-09 Score=101.25 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=46.9
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--EECCeeCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQGLDIR 316 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i--~i~G~~i~ 316 (568)
+|+++.++ ...+.++.++..++|++++|+|||||||||+.++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~------~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHEC------SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------C------CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCccccc------ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45666665 3567788889899999999999999999999999999987 77888 88886654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-07 Score=103.02 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHh-----cCCceEEEEcCCHHHHH
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEP----------STGLDPASRNNLWNVVKRA-----KQGRAIILTTHSMEEAE 447 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEP----------tsgLD~~~r~~i~~~l~~~-----~~g~tiil~tH~~~e~~ 447 (568)
|++++|-.+++|....|.+|++||+ +.|.|+..++.+.+++..+ ..+..||.+||..+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6778888899999999999999999 4477887777777777654 24678999999987653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-08 Score=105.00 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=37.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
+++.+++|+|++|||||||++.|+|...|++|+|.+.+.|+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3578999999999999999999999999999999998877643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-08 Score=100.71 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=36.0
Q ss_pred CeEEEEeE-EEEcCCCCCCCccceeeeeEEEEeC---CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 244 HAIISDNL-RKIYPGRDGNPEKVAVNGLSLALPS---GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 244 ~~i~~~~l-~k~y~~~~~~~~~~al~~isl~i~~---Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++++|+ +|.|++ .+.+|+|+||++.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~-----~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE-----EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC-----cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36999999 999932 35799999999999 9999999999999999999999855
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.2e-08 Score=107.97 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=85.3
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
|+++++|..++|+|+||||||||++.|+|...+ ..|+| .+|.++.. ...+.++.+++.+|...+... ++..|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---
Confidence 456788999999999999999999999976654 67888 67766643 344456678887776544332 11111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
..|.+.. .+ +.......-..+..++++| |+.|+|+..+ .+|+.
T Consensus 78 -----------------------------liDTpG~~~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-~~~~~ 121 (665)
T 2dy1_A 78 -----------------------------LLDAPGYGDF-----VGEIRGALEAADAALVAVS-AEAGVQVGTE-RAWTV 121 (665)
T ss_dssp -----------------------------EEECCCSGGG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHH-HHHHH
T ss_pred -----------------------------EEeCCCccch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHH-HHHHH
Confidence 1121110 01 1112222235678899999 9999999876 44444
Q ss_pred HHHhcCCceEEEEcCCHHHH
Q 008362 427 VKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 427 l~~~~~g~tiil~tH~~~e~ 446 (568)
+++ .+.++|++.|.+|..
T Consensus 122 ~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH--TTCCEEEEEECGGGC
T ss_pred HHH--ccCCEEEEecCCchh
Confidence 433 478899999998853
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-09 Score=109.72 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=87.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCCC-CCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETL 339 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~~-l~~~l 339 (568)
..+|++++++++ .++++|++|||||||++.|+| ++++.+|.++-.+..+... .....+..+..++.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 899999999999999999999 6677778775444333110 0000122333333221 11110
Q ss_pred -CHHHHH-----HHHhhhcCCCchhHHHHH----HHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 008362 340 -TGREHL-----LFYGRLKNLKGPALTQAV----EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409 (568)
Q Consensus 340 -Tv~e~l-----~~~~~l~~~~~~~~~~~~----~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLD 409 (568)
.+.+.+ ...+..++.+.....-.+ ..-+..+++.. -......++.++.++++..++++.+.+|+++++.
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG-~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilv 179 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPG-LTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILA 179 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCC-BCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCC-CCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEE
Confidence 111111 111111111110000000 00011112210 0111222456788899999999999999988888
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CC-ceEEEEcC
Q 008362 410 EPSTGLDPASRNNLWNVVKRAK-QG-RAIILTTH 441 (568)
Q Consensus 410 EPtsgLD~~~r~~i~~~l~~~~-~g-~tiil~tH 441 (568)
-..+..|.. .....++++... .| ++|++.|.
T Consensus 180 v~~~~~~~~-~~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 180 ISPANQDLA-TSDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEETTSCGG-GCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred eecccCCcC-CHHHHHHHHHhcccCCCEEEEEeC
Confidence 433444543 345566666654 34 57777775
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.9e-08 Score=91.37 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
.+|++++|+|+|||||||+.++|++.+ |.+.+++.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 468999999999999999999999865 889999877653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=91.87 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~ 355 (568)
++.+++++||||+||||++..|++.+.+..++|.+-+.|+... ...|.+...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~---------------------~a~eqL~~~~------ 148 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP---------------------AAYDQLLQLG------ 148 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH---------------------HHHHHHHHHH------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch---------------------hHHHHHHHHH------
Confidence 5789999999999999999999999988888888766654211 1223333322
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHhcC
Q 008362 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS-TG--LDPASRNNLWNVVKRAKQ 432 (568)
Q Consensus 356 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPt-sg--LD~~~r~~i~~~l~~~~~ 432 (568)
+..++. .... ......-.-.+-+++.+...+++++|+|+|. .+ .|+....++.++.+..+.
T Consensus 149 ------------~~~gv~---~~~~-~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p 212 (433)
T 3kl4_A 149 ------------NQIGVQ---VYGE-PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP 212 (433)
T ss_dssp ------------HTTTCC---EECC-TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC
T ss_pred ------------HhcCCc---eeec-cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC
Confidence 223332 1100 0011111122334566666799999999986 45 888888888887766654
Q ss_pred -CceEEEEcCCH
Q 008362 433 -GRAIILTTHSM 443 (568)
Q Consensus 433 -g~tiil~tH~~ 443 (568)
...+++.+|.-
T Consensus 213 d~vlLVlDa~~g 224 (433)
T 3kl4_A 213 DDVILVIDASIG 224 (433)
T ss_dssp SEEEEEEEGGGG
T ss_pred cceEEEEeCccc
Confidence 45566666543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-07 Score=93.76 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=39.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCceEEEEcCCHHHHHHhC
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK----QGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~----~g~tiil~tH~~~e~~~l~ 450 (568)
.++|.++++||+... |+.....+.+.+.+.. .+.++|++||+.+..+.+.
T Consensus 123 ~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 466899999999876 9888888888876542 4789999999987555443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-07 Score=83.71 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYV 310 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i 310 (568)
+|++++|+||||||||||+++|+|..++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4566544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-07 Score=97.01 Aligned_cols=154 Identities=12% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCC---CCCCCCHHHHHHHHhhhc
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL---LWETLTGREHLLFYGRLK 352 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~---l~~~lTv~e~l~~~~~l~ 352 (568)
++..++|+|++|||||||++.|+|... .+......+. ..+..|++++++. +++ |...+......+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~tT---r~~~~gi~~~~~~~i~~iD--TpG~~~~~~~~l~ 75 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQTT---RHRIVGIHTEGAYQAIYVD--TPGLHMEEKRAIN 75 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSCC---SSCEEEEEEETTEEEEEES--SSSCCHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCcc---eeeEEEEEEECCeeEEEEE--CcCCCccchhhHH
Confidence 445899999999999999999999632 1211111111 1234677777542 121 1100000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HHHHHHHHHH
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLDPAS-RNNLWNVVKR 429 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgLD~~~-r~~i~~~l~~ 429 (568)
+...+.+...++.+++-- -..+. ..+|+|++ .++.++. +.|.++++ +.+|... +..+.+.+.+
T Consensus 76 ----~~~~~~~~~~l~~~D~vl-~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~ 141 (301)
T 1ega_A 76 ----RLMNKAASSSIGDVELVI-FVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQF 141 (301)
T ss_dssp ----HHHTCCTTSCCCCEEEEE-EEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCEEE-EEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHH
Confidence 000000111122222210 01122 23898886 4555665 78999999 7899876 6777777776
Q ss_pred hcC--C--ceEEEEcCCHHHHHHhCCEEE
Q 008362 430 AKQ--G--RAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 430 ~~~--g--~tiil~tH~~~e~~~l~dri~ 454 (568)
+.+ | ..+.+++|+.+.++.++|.+.
T Consensus 142 l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 142 LASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 532 4 467788888888887777653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-06 Score=85.80 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=35.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
+.++|++++|.|+|||||||++++|+|. .|+|.+.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4468999999999999999999999998 78899998764
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.06 E-value=7e-07 Score=85.22 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
.++|++++|.|+|||||||++++|++.+++..|.+.+.+.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4679999999999999999999999999888999988877653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-06 Score=82.07 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=24.8
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457999999999999999999999999999999999765
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-08 Score=104.49 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=41.4
Q ss_pred cceeeeeEEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe
Q 008362 264 KVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313 (568)
Q Consensus 264 ~~al~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~ 313 (568)
..+++.++..+++|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 4688888888999998 9999999999999999999988776665444433
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.3e-06 Score=86.45 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=79.8
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......+. +.|+.= .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~------------------Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG------------------VAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE------------------EEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe------------------EEEEeC------CCCHHH
Confidence 45788877789999999999999999999998877543221122 233221 234433
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
.. .++......+++. +-.-+.||.++++|+..|...+.++++.+.|+|...+| .+
T Consensus 89 l~---------------~Rlls~~~~v~~~-----~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 89 LA---------------LRALSDLTSINMH-----DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp HH---------------HHHHHHHHCCCHH-----HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred HH---------------HHHHHHhhCCCHH-----HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 22 1222222222221 11124799999999999999999999999999865433 34
Q ss_pred HHHHHHh--cC-CceEEEEc
Q 008362 424 WNVVKRA--KQ-GRAIILTT 440 (568)
Q Consensus 424 ~~~l~~~--~~-g~tiil~t 440 (568)
...++++ .. |..+|++-
T Consensus 144 ~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEe
Confidence 4444443 23 56677663
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.9e-07 Score=92.95 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=45.7
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCc------EEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEECC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGE------CFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQG 312 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Ge------i~~LlG~NGaGKTTll~~l~Gl~~--p~~G~i~i~G 312 (568)
+.|++.|+ ++.++++++..+.+++ ++||.||||||||||+++|.|++. |++|.+.+-+
T Consensus 64 rll~~~~~------~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 64 RLLSFYVT------ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHHHhhc------chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 34555565 3678888998888887 999999999999999999999987 4666654433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-06 Score=80.89 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
++|++++|+|||||||||++++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999887
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-06 Score=81.15 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=26.8
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.6e-06 Score=88.25 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTT 304 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~ 304 (568)
++..+.|.||+|+|||||++.+++...+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57789999999999999999999876553
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.8e-07 Score=85.90 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC---CCCceEEEE--------CCeeCCC--cHHHhhcceEEEcCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYV--------QGLDIRT--DMDRIYTSMGVCPQED 333 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~---~p~~G~i~i--------~G~~i~~--~~~~~r~~ig~~~Q~~ 333 (568)
+.+++|+||+||||||+.++|++.+ .+++|++.. +|.++.. ....+++.+|+.+|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5789999999999999999999765 788999887 7777643 3345678899998864
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2.7e-05 Score=82.88 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=50.0
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
++|++.|++. . ++++++ +|++++++|+||+||||+...|++.+.+..|+|.+.+.|+..
T Consensus 80 ~~L~~~~~~~------~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 80 EALKEALGGE------A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHTTSS------C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHhCCC------c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4566777631 1 677887 899999999999999999999999999999999999988765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-06 Score=90.97 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=55.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
++.+++.+.|+ .+.+++++++.+.+|.+++++|+||||||||++.|+|.+.+..|++.+-+.|+.
T Consensus 31 ie~~~~~~~~~------~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQAL------STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHHH------HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhhH------HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 55566666775 356899999999999999999999999999999999999988899988777664
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.2e-05 Score=76.60 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
-=++++|++++|.|++||||||+.++|++.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34677899999999999999999999999864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.7e-05 Score=81.47 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=72.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCC------CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGI-TRT------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p------~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
.+++|+++.|.||+|+||||+...++.. ..| ..+.++++.... + ...+-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~-------------------~----~~~~l~ 159 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT-------------------F----RWERIE 159 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-------------------C----CHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC-------------------C----CHHHHH
Confidence 6899999999999999999999888763 334 233344443321 0 111111
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh-HHHHHHHHHHHc---CCCCEEEEeCCCCCCCH----
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG-MKRRLSVAISLI---GNPKVVYMDEPSTGLDP---- 417 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG-~kqrl~la~Al~---~~p~lllLDEPtsgLD~---- 417 (568)
.. +.-.+...+ ++++.+-+ .+ ..+.. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 160 ~~-~~~~g~~~~-------~~~~~l~~-----~~----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 160 NM-AKALGLDID-------NVMNNIYY-----IR----AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp HH-HHHTTCCHH-------HHHHTEEE-----EE----CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred HH-HHHhCCCHH-------HHhccEEE-----Ee----CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 11 111122211 12222111 11 12222 235566777777 78999999999876533
Q ss_pred ----HHH-HHHHHH---HHHh-c-CCceEEEEcCCHHHH
Q 008362 418 ----ASR-NNLWNV---VKRA-K-QGRAIILTTHSMEEA 446 (568)
Q Consensus 418 ----~~r-~~i~~~---l~~~-~-~g~tiil~tH~~~e~ 446 (568)
..| +.+.+. |+++ + .|.+||+++|-....
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 222 123333 4443 2 389999999976543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.6e-06 Score=90.31 Aligned_cols=42 Identities=10% Similarity=0.315 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHh-cCCceEEEEcCC
Q 008362 401 GNPKVVYMDEPSTGLDP-ASRNNLWNVVKRA-KQGRAIILTTHS 442 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~-~~r~~i~~~l~~~-~~g~tiil~tH~ 442 (568)
.+|++|++||+..-.+. ..++.+...+... ..|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 6788888988875 568899999997
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.9e-06 Score=93.53 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=48.7
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig 327 (568)
+++.+.|+ +..+++++++++ +|++++|+||||+|||||+++|++...+..|++.+.|..... .....++.+|
T Consensus 87 ~~vk~~i~------~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 87 EKVKERIL------EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp HHHHHHHH------HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred HHHHHHHH------HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 45555564 356788888888 899999999999999999999999999999999888843321 1112234456
Q ss_pred EEcC
Q 008362 328 VCPQ 331 (568)
Q Consensus 328 ~~~Q 331 (568)
+.+|
T Consensus 160 ~~~~ 163 (543)
T 3m6a_A 160 AMPG 163 (543)
T ss_dssp ----
T ss_pred cCch
Confidence 5554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0002 Score=69.67 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCceEEEEcC
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTH 441 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~---~g~tiil~tH 441 (568)
.+|+++|+..+.+.++...++.+..+.+... ...++|+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 4789999999988999877777776665432 2358888888
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=73.94 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhc-----CCceEEEEcCCHH
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA----------SRNNLWNVVKRAK-----QGRAIILTTHSME 444 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~----------~r~~i~~~l~~~~-----~g~tiil~tH~~~ 444 (568)
++++.|..++.|...+|.+|++||+.+-.+.. ....+...+.... .+..||.+|++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 56777777888888899999999997765532 2233444444321 2356788888754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00016 Score=73.36 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=48.8
Q ss_pred EeEEEEcCCCCCCCccceeee-eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNG-LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~-isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
++|.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|++.+.+.|+..
T Consensus 78 ~~l~~~~~~~-----~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 78 DELSNLFGGD-----K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHTTCS-----C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHhccc-----c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4566667631 1 45 777776 99999999999999999999999999888999988877654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.62 E-value=4.3e-05 Score=79.16 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+++|+++.|.||+|+||||+...++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999988874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=3e-05 Score=82.99 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=42.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC------------CCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHH
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 344 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~------------p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 344 (568)
-.++|+|+||+|||||++.|+|... |.+|.+.++|+++.- +....++..++.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3789999999999999999999864 678999999986521 122233444555565555555555565
Q ss_pred HHH
Q 008362 345 LLF 347 (568)
Q Consensus 345 l~~ 347 (568)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.55 E-value=2.6e-05 Score=71.71 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.|++++|+|||||||||+.++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=4.3e-05 Score=69.45 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.2
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666655 999999999999999999873
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=1.8e-05 Score=73.54 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=32.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--EEEECCeeC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDI 315 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--~i~i~G~~i 315 (568)
++|++++|.|++||||||+.++|++.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 566665433
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00024 Score=71.93 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.++..+.|.||+|+||||+.+++++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678899999999999999999999865
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00039 Score=72.36 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.2
Q ss_pred ceeeeeE--EEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 265 VAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 265 ~al~~is--l~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..||.+- =.+++|+++.|.|++|+|||||...++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455542 14889999999999999999998777653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=73.48 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
...+.|.||+|+||||+.++|++...++.|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 36899999999999999999999887766643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.35 E-value=1.9e-05 Score=78.77 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEE
Q 008362 411 PSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 411 PtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~i 455 (568)
|||+.+.....++++.+.+. . +..+..+.+|..++++..++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999998764 3 455667888999999998888643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.32 E-value=6.9e-05 Score=73.06 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred eeeeeEEEEe---CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008362 266 AVNGLSLALP---SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 311 (568)
Q Consensus 266 al~~isl~i~---~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~ 311 (568)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4677777776 8999999999999999999999998887 6666543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=67.67 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++++++..++. .++++|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4889999998887 568999999999999999997
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=3.3e-05 Score=73.91 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=36.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--EEEECCee
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLD 314 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--~i~i~G~~ 314 (568)
.+++|.++.|.|++||||||+.+.|++.+.|+.| .+.++|.+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3557899999999999999999999999888888 88887543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=5.4e-05 Score=71.46 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
..+++++|+..+++. ++++|++|+|||||++.+++
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 458899999988875 68999999999999999987
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00021 Score=72.97 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=80.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
...|+++.-.+++|+++.|.|++|+||||+...++.-.-- .| ..+.|+.=+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----------------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----------------CeEEEEECC------CCHHH
Confidence 4578888877999999999999999999998877642110 11 123333221 34444
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
... ++......+++. ...+.. ..||.++++|+.-|...+.++++.+.|+|... + ..+
T Consensus 111 l~~---------------R~~~~~~~i~~~--~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i 167 (315)
T 3bh0_A 111 NIK---------------RLIVTAGSINAQ--KIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYI 167 (315)
T ss_dssp HHH---------------HHHHHHTTCCHH--HHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHH
T ss_pred HHH---------------HHHHHHcCCCHH--HHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHH
Confidence 322 111111112211 011111 23899999999999999989999999998643 2 334
Q ss_pred HHHHHHh-c-CCce--EEEEcCC
Q 008362 424 WNVVKRA-K-QGRA--IILTTHS 442 (568)
Q Consensus 424 ~~~l~~~-~-~g~t--iil~tH~ 442 (568)
.+.++++ + .|.. +|++-|-
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHhcCCCCeEEEEeCc
Confidence 4445443 2 3555 7777653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=65.43 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|..++|+|++|+|||||++.++|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999999965
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.21 E-value=4.1e-05 Score=80.03 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=46.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceee--------------eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVN--------------GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~--------------~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.++||+..|+. ++..++ |+++.+.+||..+|+||+|+|||||+++|++..
T Consensus 133 ri~Fe~ltp~yP~-----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN-----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC-----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC-----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4778999999985 356888 899999999999999999999999999998865
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=3.5e-05 Score=80.41 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~ 313 (568)
.+.+.||++.|++ +.+.++++|+| +++|+||+|||||++.|.|...+..|.+...+.
T Consensus 17 ~v~~~~l~~~~~~------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ----CCHHHHHHT------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHhCC------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 4778899888863 56889999988 899999999999999999987666665544443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.19 E-value=3.6e-06 Score=86.51 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
.+++++++|| ...+++..+..+.+.+.+...+..+|++|++.+
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 3678999999 788999999999998887655555666766654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00011 Score=71.47 Aligned_cols=147 Identities=15% Similarity=0.061 Sum_probs=73.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.+.+|+.+.+.||+||||||++..+........|. ...++++.+.+......++.+++.-..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------------~~~~~~l~~~p~~~la~q~~~~~~~~~--- 133 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---------------AAECNIVVTQPRRISAVSVAERVAFER--- 133 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---------------GGGCEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---------------CCceEEEEeccchHHHHHHHHHHHHHh---
Confidence 34679999999999999999988764311111110 123456666554333334444443211
Q ss_pred CCCchhHHHHHHHHHHHcCCC--CCCc---ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 008362 353 NLKGPALTQAVEESLKSVNLF--HGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNV 426 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~--~~~~---~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-gLD~~~r~~i~~~ 426 (568)
+..- -..+|.. .... .+..+--.+.|...+. ..+.+.+-+++++||.-. ++|........+.
T Consensus 134 ~~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp TCCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 1000 0000100 0000 0111112344655554 344688999999999966 6777766544444
Q ss_pred HHHhcC-CceEEEE-cCCHHHHHHh
Q 008362 427 VKRAKQ-GRAIILT-THSMEEAEAL 449 (568)
Q Consensus 427 l~~~~~-g~tiil~-tH~~~e~~~l 449 (568)
+..... -++++++ |.+.+...++
T Consensus 202 i~~~~~~~~~il~SAT~~~~~~~~~ 226 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSMFCEY 226 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHHHHHH
T ss_pred HHhhCCCCeEEEEecCCCHHHHHHH
Confidence 444333 3344443 5554444333
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=67.98 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=24.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+.++++.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345666665 499999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00059 Score=62.02 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.++++|++|+|||||++.++|...+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~ 29 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVY 29 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee
Confidence 5899999999999999999996543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0014 Score=62.21 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++|.++++||.-. +|+.....+.+.+.+...+..+|++|++.+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 5688999999765 788888888777765555778899988754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0003 Score=74.10 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC-----------CCCCceEEEECCe
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGI-----------TRTTSGTAYVQGL 313 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl-----------~~p~~G~i~i~G~ 313 (568)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3457788999999999999999999998 6788899888764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00014 Score=67.90 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~ 309 (568)
...+|.++.|.|++||||||+.+.|++.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877777663
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00039 Score=64.17 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00079 Score=72.02 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=91.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCCcHHHhhcce----EEEcCCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSM----GVCPQEDLLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~~~~~~r~~i----g~~~Q~~~l~~~ 338 (568)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......| .+.+...+. ...++.+++ +-++.+...-..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~~~~~~i~~~~l~~g~ 264 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMMCSEARIDMNRVRLGQ 264 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHHHHHTTCCTTTCCGGG
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhCCC
Confidence 4567887767999999999999999999999877764432222 233322111 112221110 001111100001
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLD 416 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgLD 416 (568)
++.++ .+++.+.++.+.-. ...-.....+|..+.+ +.++.+. .+++++++|..+.-.+
T Consensus 265 ---------------l~~~~-~~~~~~a~~~l~~~--~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 265 ---------------LTDRD-FSRLVDVASRLSEA--PIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp ---------------CCHHH-HHHHHHHHHHHHTS--CEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred ---------------CCHHH-HHHHHHHHHHHhcC--CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCC
Confidence 11111 22333333333211 1111223456766653 3445554 6899999999865433
Q ss_pred H------HHH----HHHHHHHHHh-c-CCceEEEEcCCHH-------------------HHHHhCCEEEEEEC
Q 008362 417 P------ASR----NNLWNVVKRA-K-QGRAIILTTHSME-------------------EAEALCDRLGIFVD 458 (568)
Q Consensus 417 ~------~~r----~~i~~~l~~~-~-~g~tiil~tH~~~-------------------e~~~l~dri~il~~ 458 (568)
+ ..| .++...|+.+ + .|.+||+++|--. .++..||.|+.|..
T Consensus 325 ~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 325 PGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 2 122 2344445553 3 3899999998311 35678999988864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0009 Score=69.00 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+..+.|.||.|+||||+++.++....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999987553
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00014 Score=68.74 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998765 4556655443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=62.28 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
..+.|.||+|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999987554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00098 Score=69.54 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++..+++.+| +++|.|+|||||||++..|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 457788888775 99999999999999998876
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0011 Score=67.35 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHh-cCCceEEEEcC
Q 008362 401 GNPKVVYMDEPST-GLDPASRNNLWNVVKRA-KQGRAIILTTH 441 (568)
Q Consensus 401 ~~p~lllLDEPts-gLD~~~r~~i~~~l~~~-~~g~tiil~tH 441 (568)
.++++|++||+-. .-|+..++.+...+... ..|+.+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999854 33557888888888774 45666666655
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00063 Score=65.16 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999986543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0005 Score=64.89 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
+++|.|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00063 Score=63.44 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
++|+...+|.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999865
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0008 Score=63.77 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
..+|.+++|+||+||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999988664
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0025 Score=63.25 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++..+.|.||.|+||||+.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456678899999999999999998754
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.018 Score=61.31 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
++.++.++|++|+||||+..-|+..+....-++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kV 131 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKV 131 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeE
Confidence 467999999999999999999987665433334
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00072 Score=63.06 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCee
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLD 314 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~ 314 (568)
.++++.|++|||||||++.|.+.+++. -|.+..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999876543 4666666544
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=61.44 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTT 304 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~ 304 (568)
-++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0003 Score=72.88 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=33.3
Q ss_pred ceeeeeEEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCC
Q 008362 265 VAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 265 ~al~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+++++++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888888899988 9999999999999999999864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0072 Score=53.91 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=29.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceE-EEEcCCHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI-ILTTHSMEEA 446 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~ti-il~tH~~~e~ 446 (568)
..+|++||. ..|++..+..+.+.+.....+..+ ..++.++++.
T Consensus 77 ~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 77 GGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp TSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHH
T ss_pred CcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHH
Confidence 357999998 468898889998888554444444 4444555544
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0013 Score=64.51 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=28.4
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~ 314 (568)
+++++...++| +.|.||+|+||||+.+.|++..... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44444555555 8899999999999999999875421 35555543
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.01 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999866653
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0011 Score=65.11 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=32.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
...++.++.|.|++||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999998764 35677777544
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=60.01 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=62.87 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
-.+|.+++|.|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999863
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0032 Score=65.55 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC-----------CCCCCceEEEECC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG-----------ITRTTSGTAYVQG 312 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G-----------l~~p~~G~i~i~G 312 (568)
|-.++|+|.+|+|||||++.|+| ...|+.|.+.+.|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4467888888776
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.00024 Score=69.01 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=28.5
Q ss_pred HcCCCCEEEEeCCCCC-CCHHHHHHHHHHHHH-hcCCceEEEEcC
Q 008362 399 LIGNPKVVYMDEPSTG-LDPASRNNLWNVVKR-AKQGRAIILTTH 441 (568)
Q Consensus 399 l~~~p~lllLDEPtsg-LD~~~r~~i~~~l~~-~~~g~tiil~tH 441 (568)
+..+|+++++|||-.- .+.......|+.+.. +..|..++.|+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3358999999997632 332222334555544 567889999998
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0066 Score=56.16 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CC----CCCCce
Q 008362 279 CFGMLGPNGAGKTTFISMMI-GI----TRTTSG 306 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~-Gl----~~p~~G 306 (568)
-++++|+.|+|||||++.++ |. ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 46799999999999996554 43 456655
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.002 Score=67.57 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCC---CHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHH
Q 008362 401 GNPKVVYMDEPSTGL---DPASRNNLWNVVKRAK-QGRAIILTTHSMEEAE 447 (568)
Q Consensus 401 ~~p~lllLDEPtsgL---D~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~ 447 (568)
..|.++++||-=.=+ +|...+.+.+.+++.+ .|..++++||+++++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 568999999987666 4778888888888865 5999999999998653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.016 Score=59.79 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+...+.|.||.|+||||+.+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999998754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0037 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999986
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.03 Score=52.09 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
.++.++++||. ..+++.....+.+.+.....+..+|++|+..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46889999995 4577877788888777655567778887765
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=56.92 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCC----------HHHHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~----------~~e~~~l~dri~il~ 457 (568)
.+++++++||--. +++. +.+.+..+ +.|.+||++.|+ ..++..+||+|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3689999999864 6654 33334442 359999999992 466777999998775
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0016 Score=63.63 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..-+++|.||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.035 Score=58.68 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
-.+..++.|.|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999975
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.024 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
...-+.|.||.|+||||+.+.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999874
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0045 Score=56.09 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.021 Score=58.10 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=22.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHH-HHHhCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFI-SMMIGIT 301 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~ 301 (568)
.+++| ++-|.||.|+|||||. .+++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 37789 8999999999999994 5554443
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.015 Score=71.17 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=28.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G 306 (568)
.+++|+++.|.||+|+|||||...++.......|
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 4999999999999999999999888775443333
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.14 Score=55.27 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
..|+.+.-.+++|+++.|.|++|+||||+..-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666554699999999999999999999765553
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0067 Score=55.53 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0085 Score=64.17 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEP-STGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEP-tsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~ 446 (568)
.+++....+...+.+++++|+... +.|+.+.. ..+++.+++ .++.++++-+-+|..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 366666677777778888777654 44565543 456655543 477777777766644
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.007 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
|.++.|.|+.||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.063 Score=53.56 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 402 NPKVVYMDEPST--------GLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 402 ~p~lllLDEPts--------gLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
++.+|++||--. ..++.....+.+.+.....+..+|++|+..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 467999999742 346777777777777655567777887653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0069 Score=54.65 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 008362 279 CFGMLGPNGAGKTTFISMM 297 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l 297 (568)
+++|.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0066 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.++.|.|++||||||+.+.|+-
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0076 Score=57.34 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++-+++|.|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.002 Score=60.88 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
+++|.|++||||||+.+.|...+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775433333
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0076 Score=60.53 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
.|.++.|.||+||||||+.+.|..-.+ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999986442 36677765
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0069 Score=59.61 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|||||||||+.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998743
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.007 Score=56.50 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
..+++|.|+.||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 458999999999999999999975 6556654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0092 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0082 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0095 Score=56.01 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.|.||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+.++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999753
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.024 Score=57.84 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=27.1
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
|+.+--.+++|.++.|.||.|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444334688999999999999999999998874
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.++.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.012 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999986
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=58.86 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0066 Score=56.24 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.++++.|++|||||||++.|.+.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999886543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.048 Score=67.77 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.0
Q ss_pred ceeeeeEE--EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 265 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 265 ~al~~isl--~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..||.+-= .+++|+++-|.||.|+|||||...++..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34555422 4999999999999999999998766543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=54.82 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987544
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.021 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.03 Score=50.49 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.-.++++|+.|+|||||++.+++-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998753
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.014 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++.+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=54.11 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++.+++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.034 Score=49.37 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcC
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTH 441 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH 441 (568)
..++++||.- .+++..+..+.+.+.+.. .+..+|.+|+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4679999964 678888888888887653 3455555554
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.014 Score=57.42 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.015 Score=54.77 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.|-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.++++|+.|+|||||++.++|-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999998643
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999874
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.023 Score=57.77 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
...+++..+++ .|.-+.|.|++|+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45788888888 789999999999999999998876
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.013 Score=61.16 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+||+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++++|+.|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 68999999999999999988543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.03 Score=64.74 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQG 312 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G 312 (568)
..+.|.||+|+|||++.+.|+.......+ -+.++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47889999999999999999987654333 344443
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
++.++.|.|+.||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999743
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.16 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+..-+.|.||.|+||||+.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44567899999999999999999865
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=54.40 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998744
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.017 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.011 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
--++++|++|+|||||++.+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999975
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.018 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.++|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.48 E-value=0.015 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.022 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999874
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.017 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998863
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998644
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=51.11 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.15 Score=62.54 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=27.8
Q ss_pred ceeeeeEE--EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl--~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
..||.+-= .+++|+++-|.||.|+|||||.--++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666532 489999999999999999999866654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.018 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|+|||||++.++|-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.056 Score=55.29 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++++++++||. -.|++.+...+.+.+.+...+..+|++|++.+
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 46799999995 45788888888777766555778888888764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=52.68 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.+.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999998864
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.019 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4689999999999999999865
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.023 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
..+.+++|.|+.||||||+.+.|+-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999997643
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.026 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+|-.+.|.|+.||||||+.+.|+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.025 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.035 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999988764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.025 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.++|-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.026 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.019 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.+.|-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998753
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.019 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.021 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999864
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.15 Score=54.26 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=30.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
...|+.+.-.+++|+++.|.|+.|+||||+.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 346777665799999999999999999999876654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
-++++|+.|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3689999999999999999986543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++.++.|.|+.||||||+.+.|+-.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999853
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.027 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988743
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.025 Score=57.18 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|+|++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.027 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
=++++|.|+.||||||+.+.|+-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999975
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.034 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999874
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.023 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.023 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.023 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.13 Score=51.85 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 402 NPKVVYMDEPSTGLD-PASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 402 ~p~lllLDEPtsgLD-~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
+++++++||.- .+. +.....+.+.+.+...+..+|++|++.+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 78999999984 344 6677777777776666778888888765
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.027 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.024 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999863
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.025 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.033 Score=52.13 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+-+++|.|+.||||||+.+.|+-.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.029 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.025 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999763
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.029 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999997643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.024 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=93.90 E-value=0.026 Score=50.20 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999976
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.028 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|+.|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999854
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.014 Score=62.64 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=35.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
..+++.+ ..+-+|+..+|+|++|+|||||++.|++......|.+.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 3467776 677799999999999999999999998765443444443
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.046 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.032 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+..+++|.|+.||||||+.+.|+-.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.033 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.031 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
+.+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.027 Score=55.81 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.|.|-.
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.027 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998744
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.028 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+++|.|+.||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999753
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.027 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+.++.|.|+.||||||+.+.|+--
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.027 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.034 Score=55.02 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
-.++++|.+|+|||||++.|+|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 578999999999999999999976654443
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.034 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.028 Score=55.78 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.032 Score=50.98 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
=-++++|+.|+|||||++.+++-.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999743
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.028 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.028 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.034 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|.|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.03 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|.|+.||||||+-+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.03 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998854
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.036 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.08 Score=52.81 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++++++++||. -.+++.....+.+.+.+...+..+|++|++.+
T Consensus 106 ~~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 106 GKHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp TCCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 35899999995 34667777777777776556777888887754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.029 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.032 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.037 Score=55.93 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|||||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.031 Score=51.54 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999873
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.033 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.042 Score=49.91 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.037 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.42 E-value=0.034 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.044 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.03 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.022 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.034 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998743
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.043 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.04 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.035 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.043 Score=52.55 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.044 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++||.|+.||||||+.++|.-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.034 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.039 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4689999999999999999874
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.04 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|+|||||++.+++-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999963
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.057 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998853
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.048 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999974
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.043 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999884
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.045 Score=50.77 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
-++++|+.|+|||||++.+.|-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4779999999999999999986543
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.035 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57799999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.039 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.17 E-value=0.04 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.046 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999773
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.045 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999884
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.037 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 46799999999999999998754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.041 Score=55.24 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.++++|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.042 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.11 Score=56.07 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=56.4
Q ss_pred cccccCCCCChhHHHHHHHHHHHc--C---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLI--G---------------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 439 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~--~---------------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~ 439 (568)
+.++..+++||||+|-.-+|++.+ . .=++++|||. +-||....+...++++++ |-=+|++
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEE
Confidence 456678899999999665555433 1 2368999999 999999999999999864 5556677
Q ss_pred cCCHHHHHHhCCEEEEEE
Q 008362 440 THSMEEAEALCDRLGIFV 457 (568)
Q Consensus 440 tH~~~e~~~l~dri~il~ 457 (568)
|=+ .+...+|.++.+.
T Consensus 449 tP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE--NISPERGTTYKLV 464 (483)
T ss_dssp ESS--SCCCSSSEEEECC
T ss_pred Ccc--hhhhccCceEEEE
Confidence 766 5555677776654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.039 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999975
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.042 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.044 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.039 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.043 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.043 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.056 Score=51.71 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+|-++.+-|+.||||||+.+.|.--+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999976554
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.029 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++-++||-|+.||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.052 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
-++++|+.|+|||||++.+++-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 368999999999999999997543
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.055 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.096 Score=48.60 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
+..++..-+++ .|.-+.|.|++|+|||||...+..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45667666666 588999999999999999887754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.045 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 56899999999999999998753
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.052 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.036 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999874
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.05 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.048 Score=52.81 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+|-++.+-|+.||||||+.+.|.-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999986553
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.25 Score=50.20 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++.+|+++||.= .|...+...+.+.+.+-..+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 578999999963 4667777666666654444677888998875
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.061 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.047 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.053 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999983
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.053 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999763
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.057 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999975
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.64 E-value=0.048 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.061 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|-.+.|.|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999997543
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.037 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=8.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.064 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|.++.+.|++||||||+.+.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976553
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.072 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+..+.|.||.|+||||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999988754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.056 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4689999999999999888763
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.054 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.++++|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 688999999999999999999653
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.071 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|.++.+-|+.||||||..+.|.-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987554
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.059 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999854
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.069 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++|+|..|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.08 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+..+.|.|+.||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999854
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.07 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999986
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.059 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.067 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998744
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.15 E-value=0.073 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36899999999999999998743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.082 Score=50.74 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
.+|.++.+-|+.||||||+.+.|.-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36889999999999999999999887655 3443
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.036 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998643
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=92.04 E-value=0.028 Score=59.76 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
..+++++|++|+||||+...|++.+.....++.+-..|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 358999999999999999999997765444555544443
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.087 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|+++.|.||+|+||||+...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.052 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999965
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.08 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+++|.||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3899999999999999999987653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.075 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+..++.|+||.||||+|.-+.|+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.072 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67899999999999998887643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.07 Score=49.76 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3689999999999999999864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=91.80 E-value=0.037 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=3.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998865
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.098 Score=50.49 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|-++.+-|+.||||||+.+.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999986553
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.29 Score=61.01 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=30.8
Q ss_pred cceeeeeE--EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 264 KVAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 264 ~~al~~is--l~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
...|+++. ..+++|+++.+.||.|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678877 579999999999999999999998876
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.13 Score=48.70 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.6
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..++..-+++ .|..+.|.||+|+|||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566666665 5789999999999999999988754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.078 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=91.68 E-value=0.1 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.+++|.||+|||||||...|+--.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.28 Score=47.58 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCC----------HHHHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~----------~~e~~~l~dri~il~ 457 (568)
.+.+++++||----.| ++++++.+ ..|+.||++.++ +.++..+||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7889999999866544 55555543 379999999999 556777899997764
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.099 Score=50.45 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|.++++-|+.||||||+.+.|+-.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36688999999999999999998755
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.076 Score=49.64 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988875
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.1 Score=53.53 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.++.|+||.|||||||-..|+--+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999765
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.071 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.12 Score=51.53 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTT 304 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~ 304 (568)
+-.++++|.+|+|||||+|.|+|-....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEecCCCchHHHHHHHhcCceee
Confidence 3468999999999999999999976443
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.091 Score=47.48 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+..+.|.||.|+||||+++.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999987543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.31 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.|.||.|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=91.34 E-value=0.1 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++.|+||+||||||+-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999755
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.11 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.091 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4679999999999999998864
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.095 Score=55.03 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 008362 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408 (568)
Q Consensus 361 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllL 408 (568)
+.+.++++.++... +..++|.++.+++.-...+...|-++++
T Consensus 180 ~~~~~~l~~l~~~~------~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPE------DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCS------CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCC------ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 34667777776641 1357899998888877777789999887
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.16 Score=52.21 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..+.++++----++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 455666655456899999999999999999874
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.13 Score=47.77 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH----------HHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME----------EAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~----------e~~~l~dri~il~ 457 (568)
.+++++++||--. +|+. +.+.++++ .+|..|+++.++.+ ....+||.+.-|.
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999643 5543 44455543 45889999888654 2334588886554
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=90.87 E-value=0.083 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++-+++|-|+.||||||+.+.|+-.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 357799999999999999999998765
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.49 Score=45.26 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcC----------CHHHHHHhCCEEEEEE
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTH----------SMEEAEALCDRLGIFV 457 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH----------~~~e~~~l~dri~il~ 457 (568)
+.+++++||--- +|+.. + +.++++ ..|+.||++.+ -+.++..+||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI---V-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTH---H-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHH---H-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 66543 2 455553 46999999999 5667788999998775
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.16 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMM 297 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l 297 (568)
.+++|+++.|.|+.|+||||+.--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999997544
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.14 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
++.|+||.||||+|.-+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.13 Score=53.54 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCceEEEECCeeC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR-----------TTSGTAYVQGLDI 315 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~-----------p~~G~i~i~G~~i 315 (568)
-+||+|..-+|||||+|.|+|--. |..|.+.+.|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 589999999999999999999532 3457777776543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=90.45 E-value=0.15 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
..++.|.||+|||||||...|+--.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.13 Score=54.63 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.037 Score=54.18 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=21.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
...++| +.|.||.|+||||+.+.++..
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334445 668999999999999999873
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.42 E-value=0.059 Score=50.12 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 478999999999999988875
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=0.19 Score=47.61 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|..+++=|+-||||||..+.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45788889999999999999987654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=89.70 E-value=0.1 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHH-HhCC
Q 008362 280 FGMLGPNGAGKTTFISM-MIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~-l~Gl 300 (568)
++++|+.|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999998 6553
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.18 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57899999999999999999954
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.26 Score=46.46 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHHc--CCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCceEEEEcCCH-HHHHHhCCEEEEEECC
Q 008362 390 KRRLSVAISLI--GNPKVVYMDEPST--GLDPASRNNLWNVVKRAKQGRAIILTTHSM-EEAEALCDRLGIFVDG 459 (568)
Q Consensus 390 kqrl~la~Al~--~~p~lllLDEPts--gLD~~~r~~i~~~l~~~~~g~tiil~tH~~-~e~~~l~dri~il~~G 459 (568)
++.+.-|+..+ ++.++|||||.+. .++.....++.++|.+.-++..||+|+++. +++.++||.|--|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 45566666677 7789999999865 234444556888887655688999999886 5677889999888653
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=89.44 E-value=2.7 Score=44.43 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+..+++++|++|+||||+.--|+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999988885543
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.056 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.23 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
--++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998775
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.2 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
..||+|+.||||||..+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=89.05 E-value=0.35 Score=51.21 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC------------CCceEEEECCeeC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDI 315 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~------------p~~G~i~i~G~~i 315 (568)
.++|+|..++|||||++.|+|-.. ...|.+.++|..+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999998532 1246777777653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=88.91 E-value=0.14 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|..|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 568 | ||||
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-56 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-54 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-50 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-46 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-46 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-46 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-45 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-45 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-43 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-43 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-39 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-38 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-38 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-37 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-37 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-34 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-31 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-15 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-09 |
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 187 bits (475), Expect = 3e-56
Identities = 67/236 (28%), Positives = 124/236 (52%), Gaps = 9/236 (3%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
A++ +LRK K + G+S + GE FG++GPNGAGKTT + ++ + + +
Sbjct: 2 AVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 55
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
SG V G ++ + + + P+E + + G E+L F + + VE
Sbjct: 56 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 115
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+ + L + YS GM R+L +A +L+ NP++ +DEP++GLD + +
Sbjct: 116 RATEIAGLGE--KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 425 NVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
++K+ +++G I++++H+M E E LCDR+ + +G++ G +ELK RY +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 181 bits (461), Expect = 4e-54
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 11/227 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+NL K + AVN L+L + GE +LGP+G GKTT + M+ G+ T G
Sbjct: 10 ENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
Y D T + ++ + Q +W +T E++ F ++K + + V + +
Sbjct: 64 YFGDRD-VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ + + ++ + SGG ++R++VA +++ P V+ MDEP + LD R + +K
Sbjct: 123 LLQI--EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 429 R--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+ K I TH EA + DR+ + G L IG+P E+ R
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 171 bits (435), Expect = 2e-50
Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R T G+
Sbjct: 5 SNITKVFH--QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 62
Query: 309 YVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
V G ++ +++ + +G+ Q L + T ++ L N + + V
Sbjct: 63 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT 122
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
E L V L G D SGG K+R+++A +L NPKV+ DE ++ LDPA+ ++
Sbjct: 123 ELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 425 NVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
++K + G I+L TH M+ + +CD + + +G L E+ +
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 161 bits (408), Expect = 1e-46
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 11/227 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K + E V ++L + GE +GP+G GK+T + M+ G+ TSG
Sbjct: 4 QNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
++ D +G+ Q L+ L+ E++ F +L K + Q V + +
Sbjct: 58 FIGEKR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ L + D++ SGG ++R+++ +L+ P V +DEP + LD A R + +
Sbjct: 117 VLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 429 R--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
R + GR +I TH EA L D++ + G + +G P EL
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 161 bits (409), Expect = 2e-46
Identities = 53/241 (21%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+N+ K + A++G+S+++ G+ ++GPNG+GK+T I+++ G + G
Sbjct: 8 ENIVKYFGEF------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 309 YVQGLDIRTDM--DRIYTSMGVCPQEDLLWETLTGREHLLF-------------YGRLKN 353
Y + DI + + + Q + +T E+LL + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 354 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
K + + + L+ + L H + D++AG+ SGG + + + +L+ NPK++ MDEP
Sbjct: 122 PKEEEMVEKAFKILEFLKLSH--LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 179
Query: 414 GLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
G+ P ++++N V +G ++ H ++ D L + +G + G +E
Sbjct: 180 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
Query: 473 R 473
Sbjct: 240 N 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 160 bits (405), Expect = 4e-46
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 11/228 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+L Y A+ G+ L +P G+ ++G NGAGKTT +S + G+ R G
Sbjct: 10 QSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 309 YVQGLDIRTD--MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 366
G DI + + P+ ++ LT E+L+ + K + + +E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK-EGIKRDLEWI 122
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
+ G SGG ++ L++ +L+ PK++ MDEPS GL P + ++ V
Sbjct: 123 FSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 427 VKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+++ ++G I+L + A + + G + G EL
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 159 bits (403), Expect = 1e-45
Identities = 52/241 (21%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
+L K Y G + G+SL +G+ ++G +G+GK+TF+ + + + + G
Sbjct: 6 IDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 309 YVQGLDI--------------RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKN 353
V G +I + + + T + + Q LW +T E+++ ++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 354 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
L + + L V + K SGG ++R+S+A +L P V+ DEP++
Sbjct: 120 LSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 414 GLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
LDP + ++++ A++G+ +++ TH M A + + G ++ G+P+++
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238
Query: 473 R 473
Sbjct: 239 N 239
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 158 bits (400), Expect = 2e-45
Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
++ K++ E AV +SL + GE +LGP+G GKTT + M+ G+ + G
Sbjct: 7 VDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 309 YVQG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
Y+ + + + + Q L+ +T +++ F +L+ + + Q V
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
E + + L + +++ + SGG ++R+++ +++ P+V MDEP + LD R +
Sbjct: 121 REVAELLGL--TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 424 WNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+K+ + G I TH EA + DR+ + G LQ +G+P E+ +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 153 bits (387), Expect = 1e-43
Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 16/231 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ K Y G A+ ++L + GE ++GP+G+GK+T ++++ + + T G
Sbjct: 5 KNVTKTYK--MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 309 YVQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 363
Y+ + D T +G Q+ L LT E++ K + +
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 364 EESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+ +L+ + + + ++ A SGG ++R+++A +L NP ++ D+P+ LD +
Sbjct: 123 KRALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 420 RNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468
+ ++K+ + G+ +++ TH + A +R+ DG ++ +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVEREEKLR 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 151 bits (382), Expect = 8e-43
Identities = 62/235 (26%), Positives = 123/235 (52%), Gaps = 12/235 (5%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
II N+ K++ VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ +
Sbjct: 3 RIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 305 SGTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 360
+G Y + + + +G+ Q L+ LT E++ F + +
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420
+ VEE K +++ H V + + SG ++R+++A +L+ +P ++ +DEP + LD R
Sbjct: 119 KRVEEVAKILDIHH--VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 421 NNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
++ +VK + G +++ +H + A+ DR+G+ V G L +G P++L
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 141 bits (356), Expect = 3e-39
Identities = 44/217 (20%), Positives = 90/217 (41%), Gaps = 17/217 (7%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321
E + LS + +GE ++GPNGAGK+T ++ M G+T G+ G + +
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATK 69
Query: 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+ Q+ +L + K T+ + + ++ L +
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDK-----TRTELLNDVAGALALDD--KLGRS 122
Query: 382 AGKYSGGMKRRLSVAISLI-------GNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQG 433
+ SGG +R+ +A ++ +++ +DEP LD A ++ L ++ +QG
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
AI++++H + R + G + G +E+
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 140 bits (355), Expect = 3e-39
Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 15/227 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
++L + + +++ LSL + SGE F +LGP GAGKT F+ ++ G SG
Sbjct: 5 ESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
+ G TD+ + Q L+ + +++L F R+K +K P + V ++ +
Sbjct: 58 LLDG-KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTAR 113
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
+ + H + D+ SGG ++R+++A +L+ NPK++ +DEP + LDP ++ N ++
Sbjct: 114 DLKIEH--LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 429 RAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
+ ++ TH EA + DR+ + +DG L +G P+E+ +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 138 bits (349), Expect = 1e-38
Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+L Y +K + +++ + G GPNG GKTT + + + G
Sbjct: 7 DLSVGY-------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 310 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 369
G+ I +I P+E ++ ++ ++L L +K + ++L+S
Sbjct: 60 YNGVPITKVKGKI----FFLPEEIIVPRKISVEDYLKAVASLYGVKVNK--NEIMDALES 113
Query: 370 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429
V + K+ G+ S G RR+ +A +L+ N ++ +D+P +D S++ + +
Sbjct: 114 VEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 430 --AKQGRAIILTTHSMEEAEALCDRLGI 455
++G II + + CD
Sbjct: 171 ILKEKGIVIISSREELS----YCDVNEN 194
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 140 bits (353), Expect = 3e-38
Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 29/284 (10%)
Query: 219 VSMEKPDVTQERERVEQLLLE------PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSL 272
+ ME +VT E LLE H+ +N+ + GNP + ++L
Sbjct: 3 IIME--NVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP---VLKNINL 57
Query: 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE 332
+ GE + G G+GKT+ + +++G + G G + C Q
Sbjct: 58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQF 105
Query: 333 DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMK 390
+ T +E+++F + ++ +A + V + SGG +
Sbjct: 106 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQR 164
Query: 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEAL 449
R+S+A ++ + + +D P LD + ++ + V + + IL T ME
Sbjct: 165 ARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-K 223
Query: 450 CDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHEEEVE 493
D++ I GS G EL++ + + ++ E
Sbjct: 224 ADKILILHQGSSYFYGTFSELQSL-RPDFSSKLMGYDTFDQFTE 266
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 136 bits (345), Expect = 1e-37
Identities = 49/234 (20%), Positives = 109/234 (46%), Gaps = 10/234 (4%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+R Y V ++ ++L++ GE G++G +G+GK+T ++ +G
Sbjct: 5 RNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 309 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ G D+ D + + +GV Q+++L + +++ +++ + +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 368 KSVNLFHGG---VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
++ G + +Q SGG ++R+++A +L+ NPK++ DE ++ LD S + +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + +GR +I+ H + + DR+ + G + G KEL + Y
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEPESLY 232
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 134 bits (340), Expect = 9e-37
Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 16/237 (6%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
N+ YPGR E A+ ++L +P+G+ ++G +G+GK+T S++ G
Sbjct: 17 RNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 309 YVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--E 365
+ G D+R + + + Q L+ Y R + + +A
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA--YARTEEYSREQIEEAARMAY 130
Query: 366 SLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
++ +N G+ D G+ SGG ++R+++A +L+ + ++ +DE ++ LD S
Sbjct: 131 AMDFINKMDNGL-DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 189
Query: 422 NLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + ++ R ++ H + E D + + DG + G EL A+ G Y
Sbjct: 190 AIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ-HGVY 244
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 132 bits (335), Expect = 5e-36
Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 21/239 (8%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
D++ Y E + ++L++ GE +G +G GK+T I+++ TSG
Sbjct: 20 DHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 309 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
+ G +I+ + + Q+D + + T +E++L GR A + V E+ K
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-GRPT-----ATDEEVVEAAK 129
Query: 369 SVNLFH-----GGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
N D + G+ SGG K+RLS+A + NP ++ +DE ++ LD S
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 420 RNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + + + R ++ H + D++ + +G + G +EL A+ G+Y
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAK-QGAY 246
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 127 bits (320), Expect = 4e-34
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 12/231 (5%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
++ Y + + +S GP+G GK+T S++ + T+G
Sbjct: 6 HVDFAYDDS-----EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 310 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368
+ G I ++ + +G Q+ + T RE+L + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 369 SVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
S + + G+ SGG ++RL++A + + NPK++ +DE + LD S + +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+ +GR ++ H + D++ G + G EL A +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATHP 229
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 126 bits (319), Expect = 8e-34
Identities = 46/237 (19%), Positives = 111/237 (46%), Gaps = 13/237 (5%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308
++ YP R P+ + + GL+ L GE ++GPNG+GK+T +++ + + T G
Sbjct: 15 QDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 309 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLF----YGRLKNLKGPALTQAV 363
+ G + + ++ + QE ++ + +E++ + ++ + A+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 364 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+ + + D+ + SGG ++ +++A +LI P V+ +D+ ++ LD S+ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 424 WNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
++ + + R+++L T + E D + G+++ G ++L + G Y
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEK-KGCY 245
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 118 bits (298), Expect = 5e-31
Identities = 49/203 (24%), Positives = 101/203 (49%), Gaps = 8/203 (3%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVC 329
+ + + +LGP GAGK+ F+ ++ GI + G + G DI T + +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFV 75
Query: 330 PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389
PQ+ L+ L+ ++ + R N++ + V E + + + D++ + SGG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLG--IAHLLDRKPARLSGGE 131
Query: 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAE 447
++R+++A +L+ P+++ +DEP + +D ++ L ++ + I+ TH + EA
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 448 ALCDRLGIFVDGSLQCIGNPKEL 470
L D + + ++G + G KEL
Sbjct: 192 MLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 71.2 bits (173), Expect = 5e-15
Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 27/181 (14%)
Query: 281 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 340
+ G G GKTT + ++ + + + + R + + ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 341 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400
L + Q + + +
Sbjct: 64 FTSKKLVGSY--------------------------GVNVQYFEELAIPILERAYREAKK 97
Query: 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460
KV+ +DE + + ++ T + L +
Sbjct: 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP-LVKEIRRLPGAV 156
Query: 461 L 461
L
Sbjct: 157 L 157
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.66 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.33 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.07 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.73 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.25 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.07 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.49 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.4 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.99 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.83 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.82 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.79 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.66 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.66 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.66 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.62 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.54 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.48 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.43 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.39 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.3 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.25 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.18 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.1 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.09 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.02 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.94 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.93 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.91 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.89 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.8 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.75 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.74 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.73 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.72 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.71 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.7 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.64 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.55 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.52 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.47 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.47 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.41 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.36 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.21 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.14 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.11 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.06 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.05 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.98 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.93 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.93 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.93 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.91 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.86 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.85 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.84 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.8 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.75 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.67 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.59 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.51 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.45 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.32 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.31 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.3 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.27 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.26 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.25 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.18 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.13 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.11 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.07 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.99 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.84 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.82 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.75 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.71 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.62 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.61 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.5 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.5 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.49 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.43 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.27 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.26 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.25 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.17 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.16 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.07 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.06 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.05 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.04 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.03 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.93 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.83 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.81 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.75 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.64 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.61 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.6 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.56 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.55 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.52 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.51 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.5 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.48 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.47 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.38 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.32 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.2 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.12 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.0 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.0 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.99 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.92 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.89 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.87 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.83 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.81 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.8 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.76 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.67 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.59 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.57 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.56 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.42 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.41 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.32 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.16 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.14 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.07 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.04 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.98 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.91 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.76 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.7 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.65 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.49 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.46 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.38 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.31 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.29 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.16 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.16 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.1 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.98 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.87 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.84 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.81 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.77 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.67 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.62 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.62 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.61 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.4 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.34 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.14 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.01 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.91 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.77 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.54 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.22 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.01 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.96 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.94 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.65 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.28 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.19 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.06 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.76 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.3 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.71 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.57 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.41 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.2 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.97 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 84.54 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.77 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.17 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.16 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 81.03 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.3e-64 Score=493.01 Aligned_cols=221 Identities=28% Similarity=0.437 Sum_probs=201.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||+|+|| +++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 6 ~I~v~nlsk~yg------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r 78 (239)
T d1v43a3 6 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDR 78 (239)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGG
T ss_pred eEEEEEEEEEEC------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-cccc
Confidence 599999999997 378999999999999999999999999999999999999999999999999997543 3457
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+||||||++.+|+.+||+||+.++.+.++.++++.+++++++++.++|. +++++++.+||||||||++|||||+.+|+
T Consensus 79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred eEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHhhhccCCC
Confidence 8999999999999999999999999999999889999999999999997 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+|||||||+||||.+++++|++|+++ ++ |+|||++|||++++.++||||++|++|++++.|+++++.++.
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999996 44 999999999999999999999999999999999999998764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2e-63 Score=489.67 Aligned_cols=224 Identities=26% Similarity=0.438 Sum_probs=209.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD---- 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~---- 320 (568)
.|+++||+|+|| +++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....
T Consensus 3 ~i~v~nl~k~yg------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred cEEEEeEEEEEC------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhc
Confidence 699999999997 3679999999999999999999999999999999999999999999999999854222
Q ss_pred -HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 -RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 -~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
..|++||||||++.|++.+||+||+.++..+++.+.++.+++++++++.++|. +++++++++||||||||++|||||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~--~~~~~~p~~LSGGqkQRv~IAraL 154 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHH
Confidence 23678999999999999999999999999999999899999999999999997 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
+.+|++|||||||+||||.+++.++++|+++ ++ |+|||++|||++++..+||||++|++|++++.|+++++.++..+
T Consensus 155 ~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~ 233 (240)
T d1g2912 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233 (240)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999986 44 99999999999999999999999999999999999999876443
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-63 Score=488.95 Aligned_cols=220 Identities=27% Similarity=0.446 Sum_probs=167.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++||+|+|+ +++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..+++
T Consensus 1 Iev~nv~k~yg------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERG 73 (232)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-GGGTC
T ss_pred CEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc-hhhce
Confidence 68999999997 368999999999999999999999999999999999999999999999999996533 34678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
||||||++.+++.+||+||+.++...++.++++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|++
T Consensus 74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp EEEECSSCCC---------------------CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSE
T ss_pred eeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999999999988888899999999999997 489999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++|||||+||||.+++++++.|+++ + .|+|||++||||+++..+||||++|++|++++.|+++++.++.
T Consensus 152 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 9999999999999999999999985 3 5999999999999999999999999999999999999998753
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.2e-63 Score=485.22 Aligned_cols=228 Identities=28% Similarity=0.440 Sum_probs=210.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 320 (568)
+|+++||+|+|+++. ....||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. ...
T Consensus 1 mi~v~nlsk~y~~~~--~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78 (240)
T ss_dssp CEEEEEEEEEEECSS--CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHH
T ss_pred CEEEEeEEEEeCCCC--eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhh
Confidence 589999999997532 23479999999999999999999999999999999999999999999999999964 233
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
++|++|||+||++.+++.+||+||+.++.++++.++++.++++.++|+.+||. +.+++++++|||||||||+|||||+
T Consensus 79 ~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~--~~~~~~~~~LSGG~~QRvaiAraL~ 156 (240)
T d3dhwc1 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (240)
T ss_dssp HHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT--TTTSSCBSCCCHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHhhhhc
Confidence 46778999999999999999999999999999999888999999999999997 4899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
.+|++|||||||+||||.++++++++|+++ ++ |+|||++|||++++..+||||++|++|++++.|+++++.++..+
T Consensus 157 ~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~ 234 (240)
T d3dhwc1 157 SNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 234 (240)
T ss_dssp TCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCC
T ss_pred cCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence 999999999999999999999999999986 44 99999999999999999999999999999999999998765443
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1e-62 Score=484.23 Aligned_cols=224 Identities=27% Similarity=0.501 Sum_probs=208.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
.|+++||+|+|++. ++.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ..
T Consensus 3 ~i~v~nlsk~y~~g----~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG----KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGG----TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECCC----CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcc
Confidence 58999999999631 46899999999999999999999999999999999999999999999999998542 23
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|++|||+||++.|||.+||+||+.++.+.++.++++.+++++++++.+||+ +++++++++|||||||||+|||||+
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH--hhhhCChhhCCHHHHhHHHHHhHHh
Confidence 34678999999999999999999999999988999888999999999999996 5899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+|++|||||||+||||.++++++++|+++ ++ |+|||++|||++++.++||||++|++|++++.|+|+++.++.
T Consensus 157 ~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred hcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999996 44 999999999999999999999999999999999999998754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.9e-62 Score=476.06 Aligned_cols=217 Identities=28% Similarity=0.496 Sum_probs=201.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ .||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.... ..|+
T Consensus 1 mi~v~nlsk~y~~-------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~~r 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH 72 (229)
T ss_dssp CEEEEEEEEECSS-------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHH
T ss_pred CEEEEEEEEEeCC-------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc-hhHh
Confidence 5899999999962 4999999999999999999999999999999999999999999999999996533 3467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+|||+||++.+|+.+||+||+.++.++++.+. ++++.++++.+++. +++++++.+|||||||||+|||||+.+|+
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~--~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIE--HLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCT--TTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cceeeccccccCccccHHHHHHHHHhhccccH---HHHHHHHHHHhcch--hhHhCChhhCCHHHhcchhhhhhhhccCC
Confidence 89999999999999999999999998887654 35789999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+|||||||+||||.++++++++|+++ + .|.|||++|||++++..+||||++|++|++++.|+++++.++.
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred ceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999986 4 4999999999999999999999999999999999999998653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-61 Score=477.55 Aligned_cols=224 Identities=30% Similarity=0.543 Sum_probs=213.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+||+ ++||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....+.|+
T Consensus 2 aI~v~nl~k~yg~------~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 75 (238)
T d1vpla_ 2 AVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 75 (238)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CEEEEeEEEEECC------EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHh
Confidence 5899999999983 6899999999999999999999999999999999999999999999999999887788899
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+|||||++.+++.+|+.||+.+++.+++.+.++..+.++++++.++|. +..++++++||||||||++|||||+++|+
T Consensus 76 ~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lSgG~~qrv~iA~al~~~p~ 153 (238)
T d1vpla_ 76 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVNPR 153 (238)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH--HHHhhhhhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999888888889999999999997 48899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
++||||||+||||.+++++|++|+++ ++|+|||++||+|++++.+||||++|++|+++..|+++++++++..
T Consensus 154 illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~ 226 (238)
T d1vpla_ 154 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226 (238)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCC
Confidence 99999999999999999999999986 5799999999999999999999999999999999999999988764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-59 Score=469.75 Aligned_cols=223 Identities=23% Similarity=0.394 Sum_probs=204.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------ 318 (568)
.|+++||+|+||+ ++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 2 ~Lev~nl~k~yg~------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEEEEEEEECC------EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchh
Confidence 5899999999973 6799999999999999999999999999999999999999999999999998521
Q ss_pred --------HHHhhcceEEEcCCCCCCCCCCHHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 319 --------MDRIYTSMGVCPQEDLLWETLTGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 319 --------~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~-~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
....|++|||+||++.+++.+||.||+.+. ....+.+.++.++++.++++.++|.+ ...++++++|||||
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQ 154 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHH
T ss_pred cccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCch-hhhccCcccccHHH
Confidence 234678899999999999999999999986 35567777888899999999999963 34678899999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||||+|||||+.+|++|||||||+||||.++++++++|+++ ++|+|||++||||+++..+||||++|++|++++.|+++
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ 234 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999986 46999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 008362 469 ELKARY 474 (568)
Q Consensus 469 ~l~~~~ 474 (568)
++.++.
T Consensus 235 ev~~~P 240 (258)
T d1b0ua_ 235 QVFGNP 240 (258)
T ss_dssp HHHHSC
T ss_pred HHHhCC
Confidence 998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1e-59 Score=465.53 Aligned_cols=221 Identities=24% Similarity=0.406 Sum_probs=199.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH--
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-- 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~-- 320 (568)
+.+|+++||+|+||+ ++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....
T Consensus 4 d~~Lev~~l~k~yg~------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~ 77 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp SEEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeeEEEEECC------EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHH
Confidence 357999999999983 679999999999999999999999999999999999999999999999999976432
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
..|..++|+||+..+|+.+||+||+.+....+. ..+..+++++++++.+ ++. +.+++++++|||||||||+|||||
T Consensus 78 ~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLK--ERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHH--TTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHhcccccCcccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChH--HHHhCchhhCCHHHHHHHHHHHHH
Confidence 234569999999999999999999987665443 4455566777777776 575 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|++|||||||+||||.+++++|++|+++ ++|+|||++||||+++.++||||++|++|++++.|+++++.+
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999986 569999999999999999999999999999999999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-59 Score=460.18 Aligned_cols=219 Identities=23% Similarity=0.405 Sum_probs=195.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H---H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 320 (568)
+|+++||+|+|+.. +....||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... . .
T Consensus 1 mI~i~nlsk~y~~~--~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMG--EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (230)
T ss_dssp CEEEEEEEEEEEET--TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEeEEEEeCCC--CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcc
Confidence 58999999999742 1234699999999999999999999999999999999999999999999999999652 2 2
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+. |++||||||++.+++.+||+||+.+...+++ .+.++..+++.++|+.++|.+ ..+++++.+|||||||||+||
T Consensus 79 ~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~p~~LSGGqkQRvaIA 157 (230)
T d1l2ta_ 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQQQRVAIA 157 (230)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred hhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhh-hhhcCChhhCCHHHHHHHHHH
Confidence 23 3579999999999999999999999876653 455667788999999999974 468999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||+.+|++|||||||+||||.+++.++++|+++ ++ |+|||++|||++++ ++||||++|++|+++++|++
T Consensus 158 raL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 158 RALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred hhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999996 44 99999999999988 58999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-58 Score=460.37 Aligned_cols=222 Identities=23% Similarity=0.390 Sum_probs=199.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cH-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~-~~ 321 (568)
.+|+++||+|+||+ ++||+||||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .. +.
T Consensus 3 ~iL~v~nlsk~yg~------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (254)
T d1g6ha_ 3 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76 (254)
T ss_dssp EEEEEEEEEEEETT------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEEEEEEECC------eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHH
Confidence 37999999999984 679999999999999999999999999999999999999999999999999965 22 33
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-------------CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-------------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-------------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.++.|||+||++.+++.+||+||+.+....+ ....++..+++.++++.+++. ..+++++++||||
T Consensus 77 ~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS--HLYDRKAGELSGG 154 (254)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHH
T ss_pred HHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc--hhccCchhhCCcH
Confidence 4567999999999999999999998754322 123345567888999999997 4789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||||+|||||+.+|++|||||||+||||.++++++++|+++ ++|+|||++||||+++.++||||++|++|++++.|++
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecH
Confidence 999999999999999999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008362 468 KELKAR 473 (568)
Q Consensus 468 ~~l~~~ 473 (568)
+++.+.
T Consensus 235 ~e~~~~ 240 (254)
T d1g6ha_ 235 EEEIKN 240 (254)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 987543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.2e-57 Score=446.94 Aligned_cols=213 Identities=23% Similarity=0.422 Sum_probs=194.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
+++ ++.|+||. .. + ||||++. +|++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..|++
T Consensus 3 l~v-~~~k~~g~------~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-~~~r~ 71 (240)
T d2onka1 3 LKV-RAEKRLGN------FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRG 71 (240)
T ss_dssp EEE-EEEEEETT------EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-TTTSC
T ss_pred EEE-EEEEEECC------EE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC-HHHcC
Confidence 677 67899973 33 3 8999995 6899999999999999999999999999999999999996533 34688
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
|||+||++.+||.+||+||+.|. +++.++.+.+++++++++.+||. +++++++++|||||||||+|||||+.+|++
T Consensus 72 ig~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v~~~l~~~gl~--~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 72 IGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIA--HLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHHHHHHHTTTCT--TTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred ceeeccchhhcccchhhHhhhhh--hcccCHHHHHHHHHHHHHhcCcH--hhhhCChhhCCHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999985 35566777788999999999997 489999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++|||||+||||..++.+++.|+++ ++ |+|||++|||++++.++||||++|++|++++.|+++++.+.
T Consensus 148 lllDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred eEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcC
Confidence 9999999999999999999999986 44 99999999999999999999999999999999999999753
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.2e-55 Score=430.75 Aligned_cols=217 Identities=20% Similarity=0.349 Sum_probs=185.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+|+++||+++|++ ++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. +.+.+|
T Consensus 1 mle~knvsf~Y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 75 (242)
T d1mv5a_ 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (242)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEECCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHH
Confidence 5899999999974 3579999999999999999999999999999999999999999999999999975 456678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||||||++.+|+. |++||+.+..... .+ .+.+.+.++..++.+ .....+.+.+|||||||||+
T Consensus 76 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~ 149 (242)
T d1mv5a_ 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGD-YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (242)
T ss_dssp TTCCEECCSSCCCCE-EHHHHTTSCTTSC-SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred hheEEEccccccCCc-chhhheecccccc-cc----hhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHH
Confidence 999999999999987 9999997643211 11 223344444443321 01223345679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+.+|+++|||||||+||+.+++.+++.|+++.+|+|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 150 iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHHH
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998789999999999998864 999999999999999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8e-54 Score=422.84 Aligned_cols=217 Identities=23% Similarity=0.415 Sum_probs=186.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
|+++||+++|++. .+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+.+|+
T Consensus 2 I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 77 (241)
T d2pmka1 2 ITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77 (241)
T ss_dssp EEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred eEEEEEEEEeCCC----CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhc
Confidence 7899999999642 4679999999999999999999999999999999999999999999999999975 5677899
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC------C---CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF------H---GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~------~---~~~~~~~~~~LSgG~kqrl~l 395 (568)
+||||||++.+|+. |++||+.+... ..+.+ ++.+.++..++. + ....++.+.+|||||||||+|
T Consensus 78 ~i~~v~Q~~~lf~~-Ti~eNi~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRval 150 (241)
T d2pmka1 78 QVGVVLQDNVLLNR-SIIDNISLANP--GMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 150 (241)
T ss_dssp HEEEECSSCCCTTS-BHHHHHCTTST--TCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHH
T ss_pred eEEEEecccccCCc-cccccccccCc--cccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhh
Confidence 99999999999875 99999987532 12222 223333332221 0 124456778999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||+.+|+++|||||||+||+.+++.+++.|+++.+|+|+|++||+++.+. .||||++|++|++++.|++++|.++.
T Consensus 151 ARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 151 ARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp HHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHST
T ss_pred hhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999999999888999999999999885 69999999999999999999998753
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-54 Score=425.62 Aligned_cols=222 Identities=20% Similarity=0.377 Sum_probs=188.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|+++ +++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. +.+.+|
T Consensus 11 ~I~~~nvsf~Y~~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CEEEEEEEECCTTS---TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred eEEEEEEEEECCCC---CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 59999999999753 24579999999999999999999999999999999999999999999999999965 566788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+++||+||++.+|+. |++||+.+...... ...+..+ ...+.++.+ ++. ...++.+.+||||||||++||
T Consensus 88 ~~i~~v~Q~~~lf~~-tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~--~~i~~~~~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYD--TEVDEAGSQLSGGQRQAVALA 163 (251)
T ss_dssp HHEEEECSSCCCCSS-BHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGG--CBCCSSCSSSCHHHHHHHHHH
T ss_pred HHhhhccccccccCc-chhhhhhhhhcccc-hHHHHHHHHHHHHHHHHHHhccccch--hhHhccCccCChhHceEEEEe
Confidence 999999999999975 99999987532221 1111111 122344444 332 356778889999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+.+|+++|||||||+||+.+++.+++.|+++. .|+|||++||+++.++ .||||++|++|++++.|++++|.++.
T Consensus 164 Ral~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred eccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999863 3899999999999886 59999999999999999999998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-52 Score=416.50 Aligned_cols=222 Identities=22% Similarity=0.415 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|+++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. +...+|
T Consensus 13 ~I~~~nvsf~Y~~~----~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 13 DLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEEeCCC----CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence 49999999999753 3579999999999999999999999999999999999999999999999999976 567788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHH-----HHHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV-----EESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+++||+||++.+|+. |+++|+.+. .....+.++..+.. .+.++.+ |+. ...++.+.+|||||||||+||
T Consensus 89 ~~i~~v~Q~~~l~~~-ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~--t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 89 NQVALVSQNVHLFND-TVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKMDNGLD--TIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGG--SBCCTTSCSSCHHHHHHHHHH
T ss_pred heEEEEeeccccCCc-chhhhhhhc-CcccCCHHHHHHHHHHHhHHHHHHhccccch--hhhcCCCCCcCHHHHHHHHHH
Confidence 999999999999976 999999864 33333333222211 1223333 232 355677889999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
|||+.+|+++|||||||+||+.+++.+++.|+++.+++|+|++||+++.++ .||||++|++|++++.|++++|.++.+
T Consensus 165 Ral~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~~~ 242 (253)
T d3b60a1 165 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242 (253)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred HHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 999999999999999999999999999999999888999999999999885 699999999999999999999987643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.2e-53 Score=418.30 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=189.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. ..+.+|
T Consensus 16 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 16 RIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 49999999999753 3679999999999999999999999999999999999999999999999999965 567789
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||||||++.+|+. |++||+.++.. ... ++++.++++.+++.+ +........+||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~ 164 (255)
T d2hyda1 92 NQIGLVQQDNILFSD-TVKENILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 164 (255)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred heeeeeeccccCCCC-CHHHHHhccCc--CCC----HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHH
Confidence 999999999999975 99999987521 111 234556666666531 01234456789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||||+.+|+++|||||||+||+.+++.+++.|+++.+++|+|++||+++.+. .||||++|++|++++.|++++|.++.
T Consensus 165 iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 165 IARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999999888999999999999885 69999999999999999999998763
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-50 Score=395.34 Aligned_cols=209 Identities=20% Similarity=0.315 Sum_probs=186.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++.. ...+++
T Consensus 3 il~~~dv~~~~----------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~ 71 (231)
T d1l7vc_ 3 VMQLQDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 71 (231)
T ss_dssp EEEEEEECCTT----------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHH
T ss_pred EEEEECcccCc----------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHH
Confidence 68899997654 699999999999999999999999999999999976 689999999999854 445566
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-- 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~-- 401 (568)
...+|++|........++++++.++.. .+...+.++++++.+++. ++.++++++||||||||++|||||++
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~l~--~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 72 LHRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp HHEEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHHHHHTTCT--TTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred hhceeeeccccCCccccHHHHhhhccc-----hhhHHHHHHHHHHhcCCH--hHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 779999999877667899999887532 223346788899999997 48899999999999999999999986
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 -----~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+||||.+++.++++|+++ ++|+|||++||||+++..+|||+++|++|++++.|+++++.
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 77999999999999999999999999986 57999999999999999999999999999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-47 Score=368.14 Aligned_cols=194 Identities=22% Similarity=0.377 Sum_probs=171.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||+|.|+ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. +.+.
T Consensus 2 ~lev~~ls~~y~-------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~ 70 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKG 70 (200)
T ss_dssp EEEEEEEEEESS-------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGG
T ss_pred eEEEEEEEEEeC-------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh----HhcC
Confidence 489999999995 46999999999999999999999999999999999999999999999999885 3567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+++|+||+..+++.+|++|++.+.+.+++.... ++++.+.++.+++.+ .++++++||||||||++|||||+.+|+
T Consensus 71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~---~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD---LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCC---TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEeecccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCcc---cccccCcCCCcHHHHHHHHHHHhcCCC
Confidence 899999999999999999999998888775433 355778889998852 467889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++||||||+|||+.+++++++.|.+. + ++.+||.++|++ .+||++.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999885 4 366777777765 37999988754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-47 Score=382.77 Aligned_cols=189 Identities=21% Similarity=0.347 Sum_probs=159.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|+||++.+++. |++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCSE-EHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC------------EEEEEeccccccCc-eeec
Confidence 5799999999999999999999999999999999999999999999998 38999999999986 9999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcC-------CCC--CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVN-------LFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~-------L~~--~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsg 414 (568)
|+.+.... ... +.+++++..+ +.+ ....++...+|||||||||+|||||+.+|+++||||||+|
T Consensus 116 ni~~~~~~---~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVSY---DEY----RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSCC---CHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred cccccccc---cch----HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 99875321 111 2222222222 221 1234556778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 415 LDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 415 LD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+.+++.+++.+ ...++|+|+|++||+++.+ +.||||++|++|++++.|++++|.+.
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhcc
Confidence 9999999999864 4456799999999999877 57999999999999999999999764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.66 E-value=3.5e-19 Score=164.68 Aligned_cols=153 Identities=11% Similarity=0.031 Sum_probs=102.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCC--C---CCCCCCCHHHHHHHHhhhcCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE--D---LLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~--~---~l~~~lTv~e~l~~~~~l~~~ 354 (568)
++|.||||||||||+++|+|.++|+.|.+.+.|.+..... ++.++..+. + .+.. .+..+. .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~--- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSS-KFFTSK----KLV--- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEE-TTCCCS----SEE---
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH----HhhhhhhhhhhHHHHHHhh-hhhhhh----hhh---
Confidence 6899999999999999999999999999999887653321 122222111 0 0000 000000 000
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-C
Q 008362 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-Q 432 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~ 432 (568)
... ..+....++|+|+++|.++++++..+|+++++|||.. +....+.+++.+.+ ++ .
T Consensus 71 -------------~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~ 129 (178)
T d1ye8a1 71 -------------GSY------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDP 129 (178)
T ss_dssp -------------TTE------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCT
T ss_pred -------------hhh------hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhccC
Confidence 000 1122333588999999999999999999999999844 34445666677766 34 4
Q ss_pred CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 433 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 433 g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+.++|+++|+.+ ...+||++..+.+|+++..+.
T Consensus 130 ~~~il~~~h~~~-~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRD-VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSC-CSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEEccHH-HHHhhceEEEEeCCEEEEECC
Confidence 789999999964 456899999999999986543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=6.9e-12 Score=125.08 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=66.6
Q ss_pred ccCCCCChhHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 380 KQAGKYSGGMKRRLSVAIS----LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~A----l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
.....+|+|+|+.+.++.. ...+|+++++|||-++|+|...+.+.+.|++..++.-||+|||+.+.++ .+|++..
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEE
Confidence 3467899999998877665 4567899999999999999999999999998877889999999998776 5899866
Q ss_pred --EECC
Q 008362 456 --FVDG 459 (568)
Q Consensus 456 --l~~G 459 (568)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=1.4e-08 Score=104.43 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=63.2
Q ss_pred ccCCCCChhHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEE
Q 008362 380 KQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al----~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~ 454 (568)
+....||||||.++++|..+ ..++++++||||+++||+..++.+.++|.+.. .+.-+|+|||+.+.++ .||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence 44567899999998776543 57788999999999999999999999998864 4667999999988765 589976
Q ss_pred EE
Q 008362 455 IF 456 (568)
Q Consensus 455 il 456 (568)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=2.9e-06 Score=80.38 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEcCCHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVK-RA-KQGRAIILTTHSMEEAE 447 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~-~~-~~g~tiil~tH~~~e~~ 447 (568)
.+..++|+||+..|=||.....+...+. .+ +.+..++++||+.+..+
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 4556999999999999998887666554 44 45788999999976554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=8.6e-06 Score=77.57 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=36.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHh-c-CCceEEEEcCCHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWN-VVKRA-K-QGRAIILTTHSMEEAE 447 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~-~l~~~-~-~g~tiil~tH~~~e~~ 447 (568)
+.+..++|+||+..|=||.....+.. ++..+ . .+..++++||..+..+
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence 34456999999999999999988754 45554 3 4568999999876443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=6.8e-06 Score=74.21 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=30.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+++.++++.+| ++.|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 578888999876 99999999999999999997443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.0002 Score=67.13 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
+|++.+++|++|+|||||+|.|.|-.....|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58999999999999999999999977666677653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00011 Score=64.63 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++++.|++|||||||++-|..-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986443
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.0026 Score=56.66 Aligned_cols=43 Identities=26% Similarity=0.190 Sum_probs=30.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~ 448 (568)
.-+|+| .++.+...|+.+.++.++..-...++....+.+.+.+
T Consensus 66 ~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~ 108 (172)
T d1yj5a2 66 KRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARH 108 (172)
T ss_dssp CCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHH
T ss_pred CCceee--CcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHH
Confidence 347788 5678899999988887776555566666667776544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.00028 Score=63.56 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|.++.|+||+||||||+.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.79 E-value=0.0018 Score=61.70 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=30.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+.|+++.-.+.+||++.|.|+.|+||||++.-++
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45677777679999999999999999999987765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.00019 Score=67.62 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
+|.+..++|++|+|||||+|.|.|-.....|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 58899999999999999999999977666777763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.00014 Score=64.39 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~ 314 (568)
.+.|.||+|+|||||++.++..+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 478999999999999999999887776666555443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.66 E-value=0.0019 Score=59.82 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~ 355 (568)
...++.++||+|+||||++==|+-.+. .-.++++++-=|.. ..-..|.|..|+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~------------------~~g~kV~lit~Dt~---R~ga~eQL~~~a~~---- 65 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK------------------KKGFKVGLVGADVY---RPAALEQLQQLGQQ---- 65 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH------------------HTTCCEEEEECCCS---SHHHHHHHHHHHHH----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH------------------HCCCceEEEEeecc---ccchhHHHHHhccc----
Confidence 456899999999999998755553221 11245777765532 12344555555443
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 356 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
+|+.- ..-....++..-.++ ++..+...+-+++|.| |+|..+.
T Consensus 66 --------------l~v~~--~~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~~ 108 (211)
T d1j8yf2 66 --------------IGVPV--YGEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHGY 108 (211)
T ss_dssp --------------HTCCE--ECCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCCT
T ss_pred --------------cCcce--eecccchhhhHHHHH--HHHHhhccCCceEEEe--cCCcCcc
Confidence 33320 111122222222222 4555567789999999 8887543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.00052 Score=69.20 Aligned_cols=28 Identities=21% Similarity=0.585 Sum_probs=23.6
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++.++.+++|+|||||||||++.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3555656799999999999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0005 Score=60.34 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++.++.|.||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.54 E-value=0.00062 Score=59.81 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.|+++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.00036 Score=61.65 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.++++.|++|||||||++-|...++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999877765554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0084 Score=56.60 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHcCCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH
Q 008362 397 ISLIGNPKVVYMDEPST-----GLDPASRNNLWNVVKRA-K-QGRAIILTTHSM 443 (568)
Q Consensus 397 ~Al~~~p~lllLDEPts-----gLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~ 443 (568)
..-+.+|+++++|--++ --|....+.+.+.++++ + .|.+||++.|--
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhcc
Confidence 34467999999995432 12555566666666664 3 489999998853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.39 E-value=0.00079 Score=59.05 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+|-++.|.|+.||||||+-+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999998543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.30 E-value=0.0016 Score=58.04 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-+|++|+.|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.25 E-value=0.00079 Score=60.85 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|+.|||||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0012 Score=60.74 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|.++.|+||+|+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999887544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.10 E-value=0.017 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++|.++.|.|++|+||||+..-++
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 38899999999999999999986554
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.09 E-value=0.0015 Score=57.19 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++|-.+.|.||.||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999998654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.02 E-value=0.0013 Score=60.68 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~ 354 (568)
++.+++++||+|+||||++==|+-... .. .++++++-=+.. ..-..|.|.-|+++-++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~-----------------g~kV~lit~Dt~---R~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NL-----------------GKKVMFCAGDTF---RAAGGTQLSEWGKRLSI 62 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TT-----------------TCCEEEECCCCS---STTHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HC-----------------CCcEEEEEeccc---cccchhhHhhcccccCc
Confidence 578999999999999999755554322 11 234676655432 23567778777665443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.97 E-value=0.0016 Score=60.39 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
+++++||.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.94 E-value=0.002 Score=56.20 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.93 E-value=0.0019 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+++|.|+.||||||+.+.|+-.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999997544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.91 E-value=0.0017 Score=56.93 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
..++|.||.|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999755
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.89 E-value=0.002 Score=55.23 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~ 313 (568)
+++.|.|++||||||+.+-|.. ...|.+.++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH---hCCCCEEechH
Confidence 4788999999999999997743 22355555543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0047 Score=57.56 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=33.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
.+.+++++||.-. |...+...+.+.+.+...+..+|++|++.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence 3567999999854 888888888888876666677889988864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.0023 Score=56.32 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++++|+.|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.75 E-value=0.0019 Score=57.23 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++|+|+.|||||||+|.|+|-
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0024 Score=56.30 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
+++|+|..|+|||||+|.|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.73 E-value=0.0015 Score=58.27 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+||+|+.++|||||+|.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.0016 Score=60.43 Aligned_cols=107 Identities=19% Similarity=0.143 Sum_probs=58.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~ 354 (568)
.+..+++++||||+||||++-=|+-.+. . -.++++++-=+.. ..-..|.|.-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~-----------------~~~kV~lit~Dt~---R~gA~eQL~~------- 60 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-D-----------------EGKSVVLAAADTF---RAAAIEQLKI------- 60 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-H-----------------TTCCEEEEEECTT---CHHHHHHHHH-------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-H-----------------CCCceEEEeeccc---ccchhHHHHH-------
Confidence 3556999999999999998755553221 1 1234666655431 1123333433
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
..+.+++.- +......++. .-.+-..+.+...+-+++|.| |+|..+...+.+-++
T Consensus 61 -----------~a~~l~i~~--~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~~~el 115 (213)
T d1vmaa2 61 -----------WGERVGATV--ISHSEGADPA--AVAFDAVAHALARNKDVVIID--TAGRLHTKKNLMEEL 115 (213)
T ss_dssp -----------HHHHHTCEE--ECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHHHHH
T ss_pred -----------HhhhcCccc--cccCCCCcHH--HHHHHHHHHHHHcCCCEEEEe--ccccccchHHHHHHH
Confidence 334444421 1111111111 123344456667889999999 777766665555443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0023 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.|.||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999998643
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.70 E-value=0.0023 Score=57.00 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++||-||.||||||+.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999985443
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.64 E-value=0.0028 Score=54.94 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
.++.|.||.||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3688999999999999999987553 3444444
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0019 Score=59.83 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
-.+++++||||+||||++-=|+-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998855554
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.002 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+|-++.|.|+.||||||+-+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.55 E-value=0.0022 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++|+|+.|||||||++.++|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.52 E-value=0.0022 Score=56.94 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+||+|+.|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.47 E-value=0.0035 Score=55.55 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
+++|+|+.|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.47 E-value=0.0032 Score=54.72 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.|.||.||||||+.+.|+-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999974
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0034 Score=56.44 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.|+||+|||||||++.|.-..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.0032 Score=53.80 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++|+|++|+|||||++.+.|-
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999984
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0038 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|+|+.|||||||++.|+|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.21 E-value=0.0046 Score=55.48 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
+..++.|+||.||||||+.+.|+-
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.012 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.-+-|.||.|+|||++.+.+++..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 346699999999999999999876
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.13 E-value=0.0047 Score=55.75 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|+||+||||||+.+.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 569999999999999998654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0056 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..+.|+||+|+|||||++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999988753
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0056 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0053 Score=55.98 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++||-|+.||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.98 E-value=0.0056 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.|+|+.||||||+-++|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.95 E-value=0.0051 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++|+|..|+|||||++.+++-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.93 E-value=0.0075 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.+.|-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999998853
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.03 Score=51.96 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=33.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e 445 (568)
.+++|+||.= .|++.+...+...+.+...+..+|++|++.+-
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCCCCeEEEEEcCCccc
Confidence 5699999985 48888888888888766667889999988754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.93 E-value=0.0058 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.|.|++||||||+.+.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67788999999999999998655
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.91 E-value=0.0051 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.++.++.|+||.||||||..+.|+--
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.91 E-value=0.0053 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|+|+.|+|||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.86 E-value=0.0068 Score=55.73 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+..++.++||||+||||++-=|+-.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999998666643
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0084 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|+++-|.||+|+||||+.--++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999999999877664
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.0034 Score=55.22 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++|+|+.++|||||+|.|+|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999854
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.82 E-value=0.0062 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+||+|+-+||||||++.|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999743
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.0071 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+-.++.|+||.||||||+.+.|+--+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998755
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.75 E-value=0.0058 Score=60.12 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 311 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~ 311 (568)
.++.|.-+.+.|+.||||||+++.|.+..+|..=-|.+.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 345566688999999999999999999998866555553
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.67 E-value=0.0068 Score=53.28 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.|+|+.||||||+-+.|+-
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999974
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.59 E-value=0.0071 Score=56.67 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
...+.|.||.|+||||+.+.|++.+.. +-+.+++
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 345789999999999999999997643 3455554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.026 Score=51.37 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e 445 (568)
+.+++|+||. -.|.+.+...+.+.+.+-.++.-+|++|++.+-
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 4789999985 446677777777777665567778889988763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.45 E-value=0.0028 Score=54.80 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++|+|+.|+|||||++.|+|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999984
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.39 E-value=0.0094 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.|+|+.||||||+-+.|+--+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.32 E-value=0.011 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++.++|..|+||||+.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.011 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.30 E-value=0.0086 Score=54.16 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++|+|+.|+|||||++.+++-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.27 E-value=0.0094 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
++||+|+.+||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.26 E-value=0.0093 Score=56.48 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++|+|..|+|||||+|.|.|-.
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999954
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.0057 Score=60.30 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.-++||.||.|||||||++.|+..+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999986543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.18 E-value=0.013 Score=52.16 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++|--+.|+||.||||||.-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566778999999999999999993
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.13 E-value=0.011 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|..|||||||++.|.|-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.11 E-value=0.011 Score=52.66 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.07 E-value=0.011 Score=52.75 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.+.|.||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999974
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.013 Score=53.52 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++|-+++|-|+-||||||+.+.|.--+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999987644
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.99 E-value=0.011 Score=51.29 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56899999999999998765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.015 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
|++|.||.||||||.-+.|+--
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999999853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.82 E-value=0.014 Score=51.26 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|+||.||||||+.+.|+--
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.75 E-value=0.017 Score=52.89 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceEEEECCeeC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDI 315 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--~G~i~i~G~~i 315 (568)
++|-++-|.|.+||||||+.+.|.-.+... .-.+.++|.++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 368899999999999999999987433211 12466776443
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.71 E-value=0.012 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.-+++|-|+-||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998755
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.018 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|..+++-|+-||||||+.+.|.-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999988643
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.028 Score=48.87 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++-+++
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999987765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.011 Score=57.49 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++||-|+.||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 899999999999999999987653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.50 E-value=0.017 Score=53.07 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e 445 (568)
++.++++||- ..+.......++..+........+|++|+..+.
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~ 151 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSK 151 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhh
Confidence 6679999994 345556666677666665556677777777653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.49 E-value=0.019 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.43 E-value=0.4 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh
Q 008362 277 GECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~ 298 (568)
..+++|.|.-|.|||||.+.+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999998875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.27 E-value=0.018 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++++|+.|+|||||++.+.+-
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999774
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.27 E-value=0.021 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|-||.||||||.-+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56788999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.023 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.023 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++++|+.|+|||||++.+++-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 679999999999999988753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.03 Score=48.80 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC-----CCCCceEE
Q 008362 280 FGMLGPNGAGKTTFISMMIGI-----TRTTSGTA 308 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl-----~~p~~G~i 308 (568)
++|+|..|+|||||++-+++- ..|+.|..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 789999999999999876542 24555543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.025 Score=51.57 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++|+++-|.||.|+||||+..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999999997665
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.023 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++++|+.|+|||||++.+++-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.023 Score=52.04 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
+|.++++=|+-||||||+.+.|.--+.. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCE
Confidence 6899999999999999999999866653 343
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.022 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.|+||.||||||..+.|+-
T Consensus 3 I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999974
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.06 E-value=0.023 Score=50.11 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|+||.||||||+-+.|+--
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999743
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.05 E-value=0.023 Score=51.49 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 008362 279 CFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~ 298 (568)
++||.|+.||||||..+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999985
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.04 E-value=0.02 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 68999999999999998764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.03 E-value=0.027 Score=49.19 Aligned_cols=28 Identities=29% Similarity=0.198 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|.++.|-|+=||||||+.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3579999999999999999999887544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.025 Score=49.52 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999997765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.017 Score=53.01 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++..++|-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998763
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.83 E-value=0.029 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|++|+-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 6899999999999999999854
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.81 E-value=0.022 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++++|..|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.75 E-value=0.026 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+.|+||.||||||+-+.|+--
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999863
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.028 Score=49.59 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|+||.||||||+.+.|+--
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999853
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.61 E-value=0.03 Score=48.48 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++++|.+|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 579999999999999987653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.60 E-value=0.029 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
++||.|..||||||..+++.-
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.56 E-value=0.028 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMM 297 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l 297 (568)
.+++|+++.|.||.|+||||+.--+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 4889999999999999999997533
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.034 Score=48.06 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987664
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.03 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++++|+.|+|||||++.+++-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.52 E-value=0.019 Score=50.59 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56999999999999999865
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.51 E-value=0.052 Score=47.04 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999987654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=0.028 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 568899999999999999864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.48 E-value=0.036 Score=50.11 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISM 296 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~ 296 (568)
.+++|+++.|.|++|+||||+.--
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHH
Confidence 488999999999999999999743
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.47 E-value=0.026 Score=51.80 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHH-hCCCCCCce
Q 008362 279 CFGMLGPNGAGKTTFISMM-IGITRTTSG 306 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l-~Gl~~p~~G 306 (568)
-+.|+|.+|+|||||++-+ .|-..||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 3579999999999999765 556668877
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.056 Score=47.53 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 367999999999999986655
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.32 E-value=0.033 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
+.++.|.||.|+|||||++.++-
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Confidence 35788999999999999987753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.20 E-value=0.036 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|..|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6799999999999999998854
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.19 E-value=0.04 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++|+++.|.|+.|+||||+.--++
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 38899999999999999999985554
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.12 E-value=0.035 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.-++||.||-|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 458999999999999999988753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.00 E-value=0.077 Score=47.09 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=31.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
..++.-.+.+ .|.-+.|.|++|+|||||.-.+.- .|.-.+.+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~-----~G~~lvaD 45 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD 45 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH-----cCCceecC
Confidence 4566666777 788999999999999999866642 45545443
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.00 E-value=0.086 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=25.7
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
..++.-.+.+ .|.-+.|.|++|+||||+.-.+.
T Consensus 3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 4566666655 57889999999999999886654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.037 Score=52.52 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=32.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECCeeC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDI 315 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G~~i 315 (568)
.+++|.++-|.||+|+||||+.-.++. ..++..--++++.+.-
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~ 93 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 93 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc
Confidence 688999999999999999999754443 4445444578777653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.92 E-value=0.036 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+..+.|+||.|+|||+|.|.|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3456799999999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.89 E-value=0.037 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
+-|.||.|+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 568999999999999999875543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.87 E-value=0.027 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+.++|+.|+|||||++.+.+-..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 56899999999999999976443
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.05 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+.++|..|+|||||++.+++...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 67999999999999999987543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.044 Score=50.15 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=23.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++|+++.|.|++|+||||+.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999999987665
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.80 E-value=0.023 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|+||-|++||||||+.+.|.-.++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999998876553
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.045 Score=47.28 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++|+|..|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.042 Score=47.47 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.042 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|+.|+|||||++.+++
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.047 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.++|+.|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 678999999999999987653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.67 E-value=0.038 Score=48.69 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++.+++
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.045 Score=47.10 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.59 E-value=0.046 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|-|.-||||||+++.|..-+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57888999999999999988644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.57 E-value=0.042 Score=48.19 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 280 FGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
+.|+|..|+||||+++-+.....|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 57999999999999999877677887743
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.05 Score=46.96 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
++++|..|+|||||++-+++-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999888653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.52 E-value=0.039 Score=50.76 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+-|.||.|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.051 Score=47.34 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+++
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999977654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.41 E-value=0.043 Score=47.52 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988774
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.38 E-value=0.053 Score=46.58 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.085 Score=45.64 Aligned_cols=20 Identities=20% Similarity=0.612 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999988775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.046 Score=47.29 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.|+|..|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999997764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.057 Score=47.18 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++.+++
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998876
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.053 Score=51.99 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.+-+||-.+|+|+.|+|||||+..|+--.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999999988643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.07 E-value=0.084 Score=45.75 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 56899999999999997765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.04 E-value=0.055 Score=48.15 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+++
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.98 E-value=0.053 Score=49.40 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e 445 (568)
+.+++++||.- ++...++..+...+........+++++++.+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~ 143 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 143 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhh
Confidence 36799999964 56667777777777666667778888887754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.064 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.-+.|.||.|+|||++.+.|+...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 456789999999999999999754
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.91 E-value=0.18 Score=45.34 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEE 445 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e 445 (568)
++.+++++||. -.|...+...+.+.|.+-..+..+|++|++.+-
T Consensus 78 ~~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 78 YTRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp SSSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence 35689999994 668888999999988877778888999998763
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.88 E-value=0.055 Score=49.87 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
...+.|.||.|+||||+++.++-.++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347789999999999999999976643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.06 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.++|..|+|||||++.+++-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 578999999999999887653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.70 E-value=0.054 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+||+|..-+|||||+|.|||.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999963
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.05 Score=47.33 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.65 E-value=0.1 Score=45.06 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++-+++
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.054 Score=47.22 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987664
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.46 E-value=0.053 Score=54.52 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~ 446 (568)
++..+|=.||++++..|-. |+.+.+... +....|..|+-|-|--+-+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~---~aa~tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV---QASLTGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSSH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH---HHHhcCCeEEEEeccCchH
Confidence 3555667899999999986 444444333 3345799999999975543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.042 Score=47.87 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.31 E-value=0.059 Score=48.83 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+|++||-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 78999999999999999863
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.29 E-value=0.07 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 889999999999999987753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.16 E-value=0.083 Score=47.56 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
-+|++|+=.||||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.08 Score=45.79 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999988774
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.10 E-value=0.072 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHH---hCCC
Q 008362 279 CFGMLGPNGAGKTTFISMM---IGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l---~Gl~ 301 (568)
.+|++||-|+|||||...| +|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~ 29 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK 29 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc
Confidence 4689999999999999988 5543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.05 E-value=0.1 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-+||+|-.-+|||||++.||+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999964
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.98 E-value=0.071 Score=48.40 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
+.+++++||. ..+.+.....++..|.+......++++|++..
T Consensus 99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAH 140 (227)
T ss_dssp SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CeEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHH
Confidence 3469999996 46888888889988887666667777777654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.069 Score=46.22 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.075 Score=46.87 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC--CCCCCce
Q 008362 280 FGMLGPNGAGKTTFISMMIG--ITRTTSG 306 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G--l~~p~~G 306 (568)
+.|+|..|+|||||++-+.- -..||-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 57999999999999998843 2457888
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.81 E-value=0.062 Score=51.05 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=30.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCee
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLD 314 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~ 314 (568)
.++.|.++-+.||+|+||||+.-.++.......| -|+|+.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 6889999999999999999996444433322334 46777765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.13 Score=45.03 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHH-hCC
Q 008362 280 FGMLGPNGAGKTTFISMM-IGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l-~Gl 300 (568)
+.++|..|+|||||++-+ .|-
T Consensus 5 ivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 579999999999999655 443
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.67 E-value=0.051 Score=47.32 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=8.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.074 Score=46.71 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.62 E-value=0.076 Score=50.90 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC------------CCCceEEEECC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT------------RTTSGTAYVQG 312 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~------------~p~~G~i~i~G 312 (568)
-+||+|...+|||||++.||+-- .|.-|.|.+..
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 48999999999999999999753 34457776543
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.61 E-value=0.057 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.+.||.|+||||+++.++-.+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45567999999999999998654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.40 E-value=0.084 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+.|.||.|+|||++.+.|+..
T Consensus 43 vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhc
Confidence 568899999999999999863
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.34 E-value=0.062 Score=50.99 Aligned_cols=42 Identities=21% Similarity=0.473 Sum_probs=31.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCee
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLD 314 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~ 314 (568)
.++.|.++-+-||.|+||||+.-.++.... +..--++++.+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence 678999999999999999999876665433 333356777654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.089 Score=46.33 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++.++.
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999987654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.01 E-value=0.088 Score=50.12 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHH---hCCCCCCceEE
Q 008362 279 CFGMLGPNGAGKTTFISMM---IGITRTTSGTA 308 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l---~Gl~~p~~G~i 308 (568)
-+||+||.|||||||...| +|.... .|++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence 3689999999999999887 565543 3444
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.09 Score=45.29 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
+.++|..|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999987764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.77 E-value=0.052 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
+-|.||-|+||||+.|.++++++|
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCccHHHHHHHHHHhCCC
Confidence 578899999999999999999976
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.1 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-+++++||-++|||||+|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 488999999999999999999853
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.22 E-value=0.13 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.++||.|+-||||||..++|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999954
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.01 E-value=0.12 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+-|.||.|+|||++.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5689999999999999999743
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.1 Score=46.09 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|..|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999976654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.94 E-value=0.14 Score=48.89 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR-TT 304 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~-p~ 304 (568)
-++++|.-.||||||++.|+|..- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 368999999999999999999753 54
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.65 E-value=0.12 Score=46.48 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+|++||-++|||||++.|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.46 E-value=0.12 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+-|.||.|+|||++.+.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6688999999999999999853
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.28 E-value=0.23 Score=43.46 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.8
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
+.++...+.+ .|.-+.|.|++|+||||+.-.+.
T Consensus 4 t~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 4 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 3556655554 68899999999999999875543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.19 E-value=0.16 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++.++||.|+|||.|.+.|+-.+
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhhc
Confidence 367899999999999999999764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.06 E-value=0.16 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|.-.||||||++.|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999965
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.76 E-value=0.15 Score=46.66 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 008362 280 FGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~ 298 (568)
+|++||-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999998884
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.30 E-value=0.17 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++=|+-||||||+++.|.--+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999998654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.71 E-value=0.18 Score=43.98 Aligned_cols=27 Identities=41% Similarity=0.552 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC---CCCCce
Q 008362 280 FGMLGPNGAGKTTFISMMIGI---TRTTSG 306 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl---~~p~~G 306 (568)
+.++|..|+|||||++-+..- ..||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 578999999999999888542 345555
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.57 E-value=0.17 Score=49.95 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=30.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-EECCeeC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDI 315 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-~i~G~~i 315 (568)
.++++.++.+.||.|+||||+.+.|++... |.+ .+++-+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence 346778999999999999999999998764 443 3455443
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.41 E-value=0.15 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-+-++||.|+|||-|.|.|++++
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999965
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.20 E-value=0.26 Score=46.61 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=27.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.++|-+ +.+-+||..+|+|+.|+|||||+..++-
T Consensus 57 raID~l-~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 57 KVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeeeee-ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 344433 5778999999999999999999777653
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.97 E-value=0.18 Score=46.03 Aligned_cols=21 Identities=33% Similarity=0.437 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
++.|-|.=|||||||++-+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 677889999999999988765
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| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=84.54 E-value=0.27 Score=44.92 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 008362 280 FGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~ 298 (568)
++++||-.+|||||++.|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7889999999999999994
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| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.77 E-value=0.3 Score=46.85 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.7
Q ss_pred eCCcEEEEEcCCCCcHHHHH
Q 008362 275 PSGECFGMLGPNGAGKTTFI 294 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll 294 (568)
++|++..+.|.+|+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999964
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| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.17 E-value=0.33 Score=48.18 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=27.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEA 448 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~ 448 (568)
-++++||--+=... ..+-+++.+.+ .|..++++++++..++.
T Consensus 278 v~l~lDE~~~~~~~---~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 278 LWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp EEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred eEEEechHhhhccc---HHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 36888995442221 12455666654 59999999999877654
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| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.16 E-value=0.31 Score=46.90 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFI 294 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll 294 (568)
+|++..+.|.+|+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5899999999999999963
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| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.03 E-value=0.31 Score=45.13 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHH
Q 008362 280 FGMLGPNGAGKTTFISMM 297 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l 297 (568)
++++||-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 689999999999999888
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