Citrus Sinensis ID: 008368

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
METETGDDATSSSVASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNPAAEETEGTNEDEKEQLLQTEQKWEE
ccccccccccccccccccccccccHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccc
ccccccccccccccccccccccccHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccc
metetgddatsssvasllplaslsqqpyVSELLSFTLDRlhkepellRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMIteipkltsgcTEFIESAEEILEKRKMNQMLLANHSTLldlleipqlmdtcvrngnydeaLDLEAYVCKlstlhpklPIIQALAAEVKQTTQSLLSQLLQKLRsniqlpecLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAifaddtsgseenydgglLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMglgwvgldfrgllppLFEEAVLKLFLKNMSTAVENFQLVLdshrwvplpavgypahsvgeesqedvtppsylmehpplaVFINGVSAAMnelrpcaplsLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVayphcatcfgrcypggaALIMDAKSLYDglgrlsthspsrelpkpvndadgktitengdlpvvengvnpaaeetegtnedEKEQLLQTEQKWEE
metetgddatsssVASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMIteipkltsgcTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLsthspsrelpkpvndadgktitengdlpvveNGVNPaaeetegtnedekEQLLQTEQKWEE
METETGDDATsssvasllplaslsqqpYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRafiaaadallaiREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVkqttqsllsqllqklRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNPAAeetegtnedekeQLLQTEQKWEE
**************************PYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAH**************YLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLG***************************************************************
**********************LSQQPYVSELLSF************************EVAVGNYRAFIAAADALLAIREEVS************I**LTS********************MLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLS***********LAAEVKQTTQSLLSQLLQK********ECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILED*D*KNAYEYLKGMINCHRMHLFDVVNQYRAIF***************LFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLD******************************LMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTT********GLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLS************************************************************
*************VASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAH************PSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNP*************************
*********************SLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVG************DVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTH**********************************************************
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METETGDDATSSSVASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNPAxxxxxxxxxxxxxxxxxxxxxWEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
Q9JJA2640 Conserved oligomeric Golg yes no 0.822 0.729 0.368 1e-89
Q96MW5612 Conserved oligomeric Golg yes no 0.825 0.766 0.357 4e-89
Q2TBH9626 Conserved oligomeric Golg yes no 0.809 0.734 0.364 5e-89
Q9VKH0570 Conserved oligomeric Golg yes no 0.808 0.805 0.329 5e-73
Q55BB8 779 Conserved oligomeric Golg yes no 0.690 0.503 0.318 3e-59
O44502 743 Conserved oligomeric Golg yes no 0.676 0.516 0.224 8e-18
Q96WW5378 Conserved oligomeric Golg yes no 0.535 0.804 0.214 9e-11
Q04632607 Conserved oligomeric Golg yes no 0.276 0.258 0.273 6e-06
Q4V9Y0 760 Vacuolar protein sorting- no no 0.295 0.221 0.222 6e-05
Q9UID3 782 Vacuolar protein sorting- no no 0.237 0.172 0.244 8e-05
>sp|Q9JJA2|COG8_MOUSE Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus GN=Cog8 PE=2 SV=3 Back     alignment and function desciption
 Score =  331 bits (848), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/489 (36%), Positives = 274/489 (56%), Gaps = 22/489 (4%)

Query: 18  LPLASLSQQP----YVSELLSFTLDRLHKEPELLRVDAERIQR--QMQEVAVGNYRAFIA 71
            P A   ++P    Y+ EL    LDRL +EPE  R+  ER QR  Q +++A  NY+ FI 
Sbjct: 41  FPEAQWREKPDVGRYLRELSGSGLDRLRREPE--RLAEERAQRLQQTRDLAFANYKTFIR 98

Query: 72  AADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTL 131
            A+    I      ++  L  ++  +P+    C  F++ AEEI   R+MN + L  H+ +
Sbjct: 99  GAECTERIHRLFGDVEASLGRLLDRLPRFQQSCRNFVKEAEEISSSRRMNTLTLNRHTEI 158

Query: 132 LDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQL 191
           L++LEIPQLMDTCVRN  ++EAL+L AYV +L   +  +P+IQ +  EV+Q+ Q +LSQL
Sbjct: 159 LEILEIPQLMDTCVRNSYHEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQL 218

Query: 192 LQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLK 251
           +Q+LR+NIQLP CLR+IGYLRR+ VF+E E+R++FL+ R+AWL  IL  +   + Y ++ 
Sbjct: 219 IQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHIT 278

Query: 252 GMINCHRMHLFDVVNQYRAIFADDTS------GSEENYDGGLLFSWAMHQITAHLKTLKV 305
             I   R+HLFD++ QYRAIF+D+        G     +G +   W + +I+  L+ L+ 
Sbjct: 279 KTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEYTVNEGAIFHGWVLQKISQFLQVLET 338

Query: 306 MLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQ 365
            L +   G  L ++L QCMY  +    VG DFRG L P+F+   +  F K +  AVE FQ
Sbjct: 339 DLYRGIGG-RLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTFQKAVEEAVEKFQ 397

Query: 366 LVLDSHRWVPLPAV----GYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELR 421
             + S+  +   A+      PA +V       + PP  L++ PPLA F+N +  A N+LR
Sbjct: 398 DEMTSYTLISTAAILGSSNTPA-TVPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLR 456

Query: 422 PCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSLCRAFIEVAYPHC 479
            C P++L   +   L   L  V+ ++L +      +    E  +F+  C AF+E   P+ 
Sbjct: 457 LCCPVALAQDVTGTLENALTKVTKTILAFHRAEEAVFSSGEHEIFVQFCTAFLEDLVPYL 516

Query: 480 ATCFGRCYP 488
             C    +P
Sbjct: 517 NRCLQVLFP 525
Required for normal Golgi function.
Mus musculus (taxid: 10090)
>sp|Q96MW5|COG8_HUMAN Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens GN=COG8 PE=1 SV=2 Back     alignment and function description
>sp|Q2TBH9|COG8_BOVIN Conserved oligomeric Golgi complex subunit 8 OS=Bos taurus GN=COG8 PE=2 SV=1 Back     alignment and function description
>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8 OS=Drosophila melanogaster GN=CG6488 PE=2 SV=1 Back     alignment and function description
>sp|Q55BB8|COG8_DICDI Conserved oligomeric Golgi complex subunit 8 OS=Dictyostelium discoideum GN=cog8 PE=3 SV=1 Back     alignment and function description
>sp|O44502|COG8_CAEEL Conserved oligomeric Golgi complex subunit 8 OS=Caenorhabditis elegans GN=cogc-8 PE=3 SV=1 Back     alignment and function description
>sp|Q96WW5|COG8_SCHPO Conserved oligomeric Golgi complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cog8 PE=3 SV=2 Back     alignment and function description
>sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COG8 PE=1 SV=1 Back     alignment and function description
>sp|Q4V9Y0|VPS51_XENTR Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus tropicalis GN=vps51 PE=2 SV=1 Back     alignment and function description
>sp|Q9UID3|VPS51_HUMAN Vacuolar protein sorting-associated protein 51 homolog OS=Homo sapiens GN=VPS51 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
343887270568 conserved oligomeric Golgi complex compo 1.0 1.0 0.989 0.0
359476248571 PREDICTED: conserved oligomeric Golgi co 0.978 0.973 0.837 0.0
224088794575 predicted protein [Populus trichocarpa] 0.985 0.973 0.875 0.0
255550087574 Conserved oligomeric Golgi complex compo 0.978 0.968 0.873 0.0
449447141570 PREDICTED: conserved oligomeric Golgi co 0.991 0.987 0.832 0.0
297811317568 hypothetical protein ARALYDRAFT_488040 [ 0.971 0.971 0.827 0.0
18416732569 conserved oligomeric Golgi complex compo 0.973 0.971 0.820 0.0
356559236576 PREDICTED: LOW QUALITY PROTEIN: conserve 0.964 0.951 0.842 0.0
21554380569 unknown [Arabidopsis thaliana] 0.973 0.971 0.818 0.0
356502551580 PREDICTED: conserved oligomeric Golgi co 0.957 0.937 0.843 0.0
>gi|343887270|dbj|BAK61816.1| conserved oligomeric Golgi complex component [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1156 bits (2990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/568 (98%), Positives = 564/568 (99%)

Query: 1   METETGDDATSSSVASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQE 60
           METETGDDATSSSVASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQE
Sbjct: 1   METETGDDATSSSVASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQE 60

Query: 61  VAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKM 120
           VAVGNYRAFIAAADALLAIREEVSSIDKHLDS+ITEIPKLTSGCTEFIESAEEILEKRKM
Sbjct: 61  VAVGNYRAFIAAADALLAIREEVSSIDKHLDSLITEIPKLTSGCTEFIESAEEILEKRKM 120

Query: 121 NQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEV 180
           NQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEV
Sbjct: 121 NQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEV 180

Query: 181 KQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILED 240
           KQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILED
Sbjct: 181 KQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILED 240

Query: 241 LDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHL 300
           LDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHL
Sbjct: 241 LDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHL 300

Query: 301 KTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTA 360
           KTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF KNMSTA
Sbjct: 301 KTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFSKNMSTA 360

Query: 361 VENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNEL 420
           VENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNEL
Sbjct: 361 VENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNEL 420

Query: 421 RPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCA 480
           RPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCA
Sbjct: 421 RPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCA 480

Query: 481 TCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENG 540
           TCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENG
Sbjct: 481 TCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENG 540

Query: 541 VNPAAEETEGTNEDEKEQLLQTEQKWEE 568
           VNPAAEETEGTN DEKEQ LQTE+K EE
Sbjct: 541 VNPAAEETEGTNVDEKEQPLQTEEKPEE 568

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476248|ref|XP_002279909.2| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Vitis vinifera] gi|296081667|emb|CBI20672.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088794|ref|XP_002308543.1| predicted protein [Populus trichocarpa] gi|222854519|gb|EEE92066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550087|ref|XP_002516094.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] gi|223544580|gb|EEF46096.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449447141|ref|XP_004141327.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Cucumis sativus] gi|449525202|ref|XP_004169607.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811317|ref|XP_002873542.1| hypothetical protein ARALYDRAFT_488040 [Arabidopsis lyrata subsp. lyrata] gi|297319379|gb|EFH49801.1| hypothetical protein ARALYDRAFT_488040 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18416732|ref|NP_568256.1| conserved oligomeric Golgi complex component-related protein [Arabidopsis thaliana] gi|27754564|gb|AAO22729.1| unknown protein [Arabidopsis thaliana] gi|28393871|gb|AAO42343.1| unknown protein [Arabidopsis thaliana] gi|332004364|gb|AED91747.1| conserved oligomeric Golgi complex component-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356559236|ref|XP_003547906.1| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 8-like [Glycine max] Back     alignment and taxonomy information
>gi|21554380|gb|AAM63487.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356502551|ref|XP_003520082.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
TAIR|locus:2143074569 AT5G11980 "AT5G11980" [Arabido 0.957 0.956 0.764 1.7e-224
UNIPROTKB|F1NSJ6619 COG8 "Uncharacterized protein" 0.864 0.793 0.351 1.3e-75
ZFIN|ZDB-GENE-050320-74634 cog8 "component of oligomeric 0.850 0.761 0.346 2.1e-75
UNIPROTKB|Q2TBH9626 COG8 "Conserved oligomeric Gol 0.809 0.734 0.338 1.9e-74
UNIPROTKB|F1S390650 LOC100517220 "Uncharacterized 0.808 0.706 0.338 1.9e-74
MGI|MGI:2142885640 Cog8 "component of oligomeric 0.806 0.715 0.345 1.9e-74
RGD|1307074624 Cog8 "component of oligomeric 0.808 0.735 0.340 2.5e-74
UNIPROTKB|H3BQV3534 COG8 "Conserved oligomeric Gol 0.808 0.859 0.336 3.1e-74
UNIPROTKB|Q96MW5612 COG8 "Conserved oligomeric Gol 0.808 0.75 0.336 3.1e-74
UNIPROTKB|F1N5R4626 COG8 "Conserved oligomeric Gol 0.809 0.734 0.336 5.1e-74
TAIR|locus:2143074 AT5G11980 "AT5G11980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2167 (767.9 bits), Expect = 1.7e-224, P = 1.7e-224
 Identities = 421/551 (76%), Positives = 460/551 (83%)

Query:     1 METETGDDATXXXXXXXXXXXXXXXXXYVSELLSFTLDRLHKEPELLRVDAERIQRQMQE 60
             M  E G+ +                  YVSELLSFTLDRLHKEPELLRVDAERIQRQMQE
Sbjct:     1 MAMEVGEMSQPEATASLLSLASATQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQE 60

Query:    61 VAVGNYRXXXXXXXXXXXXREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKM 120
             VAVGNYR            R+EVSSIDKHL+S+I E+PKLTSGCTEFI+SAE ILEKRKM
Sbjct:    61 VAVGNYRAFITAADALLAIRQEVSSIDKHLESLIGEVPKLTSGCTEFIDSAENILEKRKM 120

Query:   121 NQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEV 180
             NQ LLANHSTLLDLLEIPQLMDTCVRNGN+DEALDLEA+V KL+TLHPKLP+IQALAAEV
Sbjct:   121 NQALLANHSTLLDLLEIPQLMDTCVRNGNFDEALDLEAFVSKLATLHPKLPVIQALAAEV 180

Query:   181 XXXXXXXXXXXXXXXRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILED 240
                            RSNIQLPECLRIIGYLRRIGVF EYEMRLQFLRCREAWLTGILED
Sbjct:   181 RQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFGEYEMRLQFLRCREAWLTGILED 240

Query:   241 LDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHL 300
             LDQKNAYEYLKGMINCHRMHLFDVVNQYRAIF+DDTSGSEENYDGGLLFSWAMHQIT+HL
Sbjct:   241 LDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFSDDTSGSEENYDGGLLFSWAMHQITSHL 300

Query:   301 KTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTA 360
             KTLK+MLPKITEG SLSNILDQCMYCAMGLG VGLDFRGLLPPLFEEAVL LF KNMSTA
Sbjct:   301 KTLKIMLPKITEGGSLSNILDQCMYCAMGLGGVGLDFRGLLPPLFEEAVLNLFSKNMSTA 360

Query:   361 VENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNEL 420
             VENFQLVLDSHRWVPLP+VG+P+  + E+S++DVTPPSYLMEHPPLAVFINGVS+A+NEL
Sbjct:   361 VENFQLVLDSHRWVPLPSVGFPSSGINEDSKDDVTPPSYLMEHPPLAVFINGVSSALNEL 420

Query:   421 RPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCA 480
             RPCAPLSLK+V+A ELIKGLQAVSDSLLRY+TTRMLR +ES LFLSLCRAF+EV +PHCA
Sbjct:   421 RPCAPLSLKNVVAHELIKGLQAVSDSLLRYNTTRMLRLSESNLFLSLCRAFVEVVFPHCA 480

Query:   481 TCFGRCYPGGAALIMDAKSLYDGLGRL----STHSPSRELPKPVNDADGKTITENG--DL 534
             TCFGRCYPGGA ++MDAKS Y+GLGR+    S+  PS + PK ++  D K  +ENG    
Sbjct:   481 TCFGRCYPGGATIVMDAKSAYEGLGRILAASSSQEPSNKSPKVIS-TDTKDASENGVASQ 539

Query:   535 PVVENGVNPAA 545
             P  +   NP A
Sbjct:   540 PEEKQAENPNA 550
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1NSJ6 COG8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-74 cog8 "component of oligomeric golgi complex 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBH9 COG8 "Conserved oligomeric Golgi complex subunit 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S390 LOC100517220 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2142885 Cog8 "component of oligomeric golgi complex 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307074 Cog8 "component of oligomeric golgi complex 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H3BQV3 COG8 "Conserved oligomeric Golgi complex subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96MW5 COG8 "Conserved oligomeric Golgi complex subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5R4 COG8 "Conserved oligomeric Golgi complex subunit 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VKH0COG8_DROMENo assigned EC number0.32910.80800.8052yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032217001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (571 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029407001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (353 aa)
    •   0.459
GSVIVG00015801001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (690 aa)
    • • 0.403

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
pfam04124339 pfam04124, Dor1, Dor1-like family 1e-138
pfam0870087 pfam08700, Vps51, Vps51/Vps67 1e-11
>gnl|CDD|217912 pfam04124, Dor1, Dor1-like family Back     alignment and domain information 
 Score =  405 bits (1042), Expect = e-138
 Identities = 161/340 (47%), Positives = 224/340 (65%), Gaps = 7/340 (2%)

Query: 29  VSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDK 88
           + +L +  L+ L KEPELL  +A  I  Q+Q++A  NY+ FI AA A +AIR+E      
Sbjct: 1   LRDLSTKPLEELEKEPELLAEEAAEILAQIQDLARKNYKTFIDAARATIAIRQEFGDSRA 60

Query: 89  HLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNG 148
            LD ++  +P+LT  CT F ++AEEI E R++N +LL NH  LL+LLE+PQLMDTC+RNG
Sbjct: 61  QLDDLVLSLPQLTELCTRFNKAAEEISESRRLNVLLLDNHEQLLELLELPQLMDTCIRNG 120

Query: 149 NYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRII 208
            Y EAL+L AY  +L   +   P+IQ++AA+V++T Q LL QL+Q+LRS +QLPECLR++
Sbjct: 121 YYSEALELAAYASRLRQRYSTNPVIQSIAAQVEETVQELLEQLIQQLRSPLQLPECLRVV 180

Query: 209 GYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQY 268
           GYLRR+ V +E E+R +FL+ R+AWL  ILE LD  N Y  LK +I   R++LFD++ QY
Sbjct: 181 GYLRRMPVLTEAELRSKFLQSRDAWLEKILEALDTTNPYFLLKRLIEIVRVNLFDILTQY 240

Query: 269 RAIFADDT-----SGSEENYDGGLLFS-WAMHQITAHLKTLKVMLPKITEGVSLSNILDQ 322
           RAIF D+             +G  +FS W +  I++ L+ L+ ML +   GV L ++L Q
Sbjct: 241 RAIFPDEGSLLRPLADRYKANGDAIFSNWVLDNISSFLQLLERMLKRG-IGVFLEHVLGQ 299

Query: 323 CMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVE 362
           CMY  +  G VG DFR L PPL E  VL+ F  N+ TA+E
Sbjct: 300 CMYFLLSFGRVGADFRALFPPLLESVVLRRFRTNVETAIE 339

Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35. Length = 339
>gnl|CDD|219977 pfam08700, Vps51, Vps51/Vps67 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
KOG2069581 consensus Golgi transport complex subunit [Intrace 100.0
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 100.0
KOG2346636 consensus Uncharacterized conserved protein [Funct 100.0
PF15469182 Sec5: Exocyst complex component Sec5 99.81
KOG2347 934 consensus Sec5 subunit of exocyst complex [Intrace 99.4
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 99.16
PF10475291 DUF2450: Protein of unknown function N-terminal do 98.73
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 98.72
KOG2033 863 consensus Low density lipoprotein B-like protein [ 98.58
KOG2180 793 consensus Late Golgi protein sorting complex, subu 98.04
KOG3691 982 consensus Exocyst complex subunit Sec8 [Intracellu 97.63
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 97.48
KOG2215673 consensus Exocyst complex subunit [Intracellular t 97.42
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 97.37
PF10191 766 COG7: Golgi complex component 7 (COG7); InterPro: 97.35
KOG2176 800 consensus Exocyst complex, subunit SEC15 [Intracel 96.85
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 96.3
PF07393 710 Sec10: Exocyst complex component Sec10; InterPro: 94.98
KOG2115 951 consensus Vacuolar sorting protein VPS45 [Intracel 94.67
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 94.26
KOG2307 705 consensus Low density lipoprotein receptor [Intrac 93.08
PF04129508 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V 92.79
KOG2069581 consensus Golgi transport complex subunit [Intrace 92.19
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 92.14
KOG0412 773 consensus Golgi transport complex COD1 protein [In 89.69
KOG3745 763 consensus Exocyst subunit - Sec10p [Intracellular 86.74
KOG1961683 consensus Vacuolar sorting protein VPS52/suppresso 86.51
PF04136157 Sec34: Sec34-like family ; InterPro: IPR007265 Sec 83.62
PF07139302 DUF1387: Protein of unknown function (DUF1387); In 83.59
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 80.73
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-83  Score=681.30  Aligned_cols=476  Identities=43%  Similarity=0.720  Sum_probs=453.4

Q ss_pred             CCCCCCCCChHHHHHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHh
Q 008368           16 SLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMIT   95 (568)
Q Consensus        16 ~~~~l~s~~~~~Yl~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~   95 (568)
                      +.+. .+++.++|+.+|.++++++|.+|++.|+.+++.++.++|+|+..||++||+++++++.+...++.++.+...|..
T Consensus        13 ~~~~-~~~~~~~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l   91 (581)
T KOG2069|consen   13 DSLR-NSPEMDAYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSL   91 (581)
T ss_pred             HHhc-cCchhHHHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            3344 488999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHH
Q 008368           96 EIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQA  175 (568)
Q Consensus        96 ~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~  175 (568)
                      .++.+++.|.+|.+....+.+.|+.+..++..++.+++++|||++|+.||++|+|+||+++.+++.++..+++..|++++
T Consensus        92 ~~~~L~s~~~~f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi~~  171 (581)
T KOG2069|consen   92 QLPELTSPCKRFQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVIQE  171 (581)
T ss_pred             hhHHhhhHHHHHHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHH
Q 008368          176 LAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMIN  255 (568)
Q Consensus       176 I~~ev~~~~~~l~~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie  255 (568)
                      |..++...+..|+.+|..+|++++++++|+|+|+|||+++.+++.++|..||++|++|+.+.+..|+..+++.|++++|+
T Consensus       172 i~~~v~~tv~~ll~qL~~~l~~pl~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~~~~~~~l~~~i~  251 (581)
T KOG2069|consen  172 IATEVEQTVQKLLEQLIQQLRTPLQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDISTNNPYLYLKKTIE  251 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCCC------chhhHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhh
Q 008368          256 CHRMHLFDVVNQYRAIFADDTSGSEENYD------GGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMG  329 (568)
Q Consensus       256 ~~R~~lfdivtqY~aiF~~~~~~~~~~~~------~s~l~~w~~~~v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~S  329 (568)
                      ++|.|+|++++||++|||++++.++.+.+      .+++..|..+.+..|+.++..++.+..  .++++||+||||||.|
T Consensus       252 ~~r~~lf~~i~qY~aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~--~~l~~vl~~cmyf~~S  329 (581)
T KOG2069|consen  252 IIRVNLFDIITQYLAVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI--ESLEHVLGQLMYFALS  329 (581)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh--chHHHHHHHHHHHHHh
Confidence            99999999999999999999876443332      468999999999999999999998753  3999999999999999


Q ss_pred             hhhcccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCcccccchHHHHH
Q 008368          330 LGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVF  409 (568)
Q Consensus       330 L~rvG~DF~~ll~~l~~~~~~~~f~~~~~~a~~~f~~~l~~~~w~~~~~~~~~s~~~~~~~~~~~~pP~~L~~~~pLa~~  409 (568)
                      |||+|+|||++++|+|++.+.++|.+++++++++|+..|.+|.|+..+....+..+.+.++++..+||.+|++|||||+|
T Consensus       330 F~rvg~Dfr~~lap~f~~~vl~~F~knvqe~vEkfq~el~~y~~i~~~a~~~~~~~v~~d~~~~vqpp~~llD~~pla~~  409 (581)
T KOG2069|consen  330 FGRVGLDFRGLLAPLLECVVLQRFMKNVEEATEKFELELESYYLIQSVAKVVPENKVIEDSPTDVQPPLSLLDDPPLAEF  409 (581)
T ss_pred             hccccchhcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccccccCCcccCCCCCCCccCCCchhcccchHHHH
Confidence            99999999999999999999999999999999999999999999988776654455566677889999999999999999


Q ss_pred             HHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHhhhhHHHHHhhhhcCC
Q 008368          410 INGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPG  489 (568)
Q Consensus       410 ~N~~L~alN~LR~~~p~~l~~~l~~~L~~~l~~~~~~ll~~~~~~~~~~~e~~~f~~~~~~f~~~~vP~v~~c~~~~fp~  489 (568)
                      +|+|+.|||+||.|+|++++..++..|+.+++.+.+.|++|+++.+++.+|.++|+++|++|.++++||+.+|++.+|||
T Consensus       410 lN~I~~a~nelr~c~p~al~~dv~~~l~d~l~kv~~~ila~~~~~~~ssse~e~f~~~c~i~~~dv~P~~~rc~~~~fpp  489 (581)
T KOG2069|consen  410 LNGILSALNELRLCAPLALKEDVVNTLDDSLQKVEEEILAFHRTEAFSSSENEAFVRLCRIFKEDVVPYEPRCKIRTFPP  489 (581)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhccccccceeeecCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHH
Q 008368          490 GAALI  494 (568)
Q Consensus       490 ~~~~~  494 (568)
                      ++.-.
T Consensus       490 a~~~~  494 (581)
T KOG2069|consen  490 ANKIV  494 (581)
T ss_pred             hhhhh
Confidence            88433

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>KOG2346 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [] Back     alignment and domain information
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1 Back     alignment and domain information
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
2d2s_A235 Exocyst complex component EXO84; tethering complex 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Length = 235 Back     alignment and structure
 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 36/226 (15%), Positives = 84/226 (37%), Gaps = 16/226 (7%)

Query: 134 LLEIPQLMDTCVRNGNYDEALDL----EAYVCKL--STLHPKLPIIQALAAEVKQTTQSL 187
           L E  + +D  +    ++ A++     E+ +  L       +L ++  ++ +++Q  +++
Sbjct: 18  LDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAI 77

Query: 188 LSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQK-NA 246
            S+L Q + S+ ++         + ++G     +    FL+ R  ++  ++  +    N 
Sbjct: 78  SSKLSQSILSSNEIVHLKSGTENMIKLG--LPEQALDLFLQNRSNFIQDLILQIGSVDNP 135

Query: 247 YEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVM 306
             YL  +       +   V  ++ IF +            +L  W   ++  H K +   
Sbjct: 136 TNYLTQLAVIRFQTIKKTVEDFQDIFKELG-----AKISSILVDWCSDEVDNHFKLIDKQ 190

Query: 307 LPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKL 352
           L            +        GL  VGLDF   L    ++   K+
Sbjct: 191 LLNDEM--LSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDKI 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
2d2s_A235 Exocyst complex component EXO84; tethering complex 99.89
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Back     alignment and structure
Probab=99.89  E-value=6.1e-22  Score=196.86  Aligned_cols=213  Identities=16%  Similarity=0.200  Sum_probs=181.2

Q ss_pred             HHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCC------ChHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Q 008368          128 HSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPK------LPIIQALAAEVKQTTQSLLSQLLQKLRSNIQL  201 (568)
Q Consensus       128 ~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~------~p~~~~I~~ev~~~~~~l~~~L~~~L~~~l~L  201 (568)
                      .+.+-|+-+.|..||.||..++|++|+++..+++.++...++      ......|...++++...|.+.|...+.....+
T Consensus        12 ~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~   91 (235)
T 2d2s_A           12 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEI   91 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred             chhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            356778999999999999999999999999999999987653      45577788999999999999999999777789


Q ss_pred             hHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCC
Q 008368          202 PECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLD-QKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD-TSGS  279 (568)
Q Consensus       202 ~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~-~~~~~~yl~r~ie~~R~~lfdivtqY~aiF~~~-~~~~  279 (568)
                      .++++.|.+|.|||..  ++++..||++|..+++..++++. .+|+..|+.+++.+||..+.+|+..|.++|++. ... 
T Consensus        92 ~~~r~~v~~L~rLg~~--~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~-  168 (235)
T 2d2s_A           92 VHLKSGTENMIKLGLP--EQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKI-  168 (235)
T ss_dssp             HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-
T ss_pred             HHHHHHHHHHHHCCCh--hHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-
Confidence            9999999999999985  79999999999999999999984 468999999999999999999999999999983 232 


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhhhhhcccchhhhcchHHHHHHH
Q 008368          280 EENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVL  350 (568)
Q Consensus       280 ~~~~~~s~l~~w~~~~v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~SL~rvG~DF~~ll~~l~~~~~~  350 (568)
                           .|.|+.|+.+++..|..++++|+..  +++-...-+..+.-.|..|..+|+||+++|..++...+.
T Consensus       169 -----~S~lV~Wa~~eve~f~~l~~rqv~~--~~~l~~ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~  232 (235)
T 2d2s_A          169 -----SSILVDWCSDEVDNHFKLIDKQLLN--DEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSD  232 (235)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGG
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHHccC--CccHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHh
Confidence                 6789999999999999999999974  222222223333344688999999999999999876543

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 568
d2d2sa1229 a.118.17.2 (A:525-753) Exocyst complex component E 1e-41
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  148 bits (374), Expect = 1e-41
 Identities = 36/226 (15%), Positives = 86/226 (38%), Gaps = 16/226 (7%)

Query: 134 LLEIPQLMDTCVRNGNYDEALDL----EAYVCKLSTLHPKLPI--IQALAAEVKQTTQSL 187
           L E  + +D  +    ++ A++     E+ +  LS       +  +  ++ +++Q  +++
Sbjct: 12  LDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAI 71

Query: 188 LSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNA- 246
            S+L Q + S+ ++         + ++G+    +    FL+ R  ++  ++  +   +  
Sbjct: 72  SSKLSQSILSSNEIVHLKSGTENMIKLGLPE--QALDLFLQNRSNFIQDLILQIGSVDNP 129

Query: 247 YEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVM 306
             YL  +       +   V  ++ IF +  +         +L  W   ++  H K +   
Sbjct: 130 TNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISS-----ILVDWCSDEVDNHFKLIDKQ 184

Query: 307 LPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKL 352
           L         S  +        GL  VGLDF   L    ++   K+
Sbjct: 185 LLNDEMLSPGS--IKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDKI 228

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 99.97
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.2e-31  Score=257.83  Aligned_cols=214  Identities=15%  Similarity=0.179  Sum_probs=186.5

Q ss_pred             HHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCC------hHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Q 008368          128 HSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKL------PIIQALAAEVKQTTQSLLSQLLQKLRSNIQL  201 (568)
Q Consensus       128 ~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~------p~~~~I~~ev~~~~~~l~~~L~~~L~~~l~L  201 (568)
                      ..++-||-+.|..||.||++++|+||+++..++++++.+.++.      .....|..+++++.+.|.++|...|+++.++
T Consensus         6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~~~~~~   85 (229)
T d2d2sa1           6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEI   85 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred             HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence            4678889999999999999999999999999999998776542      3456688899999999999999999998899


Q ss_pred             hHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 008368          202 PECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLD-QKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSE  280 (568)
Q Consensus       202 ~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~-~~~~~~yl~r~ie~~R~~lfdivtqY~aiF~~~~~~~~  280 (568)
                      ++|+++|++|+|||..  +++|..||++|..|+++.+.++. .++++.||++++++||.++++|+++|++||+++.++  
T Consensus        86 ~~~~~~v~~L~rLg~~--~~A~~lfL~~rs~~l~~~i~~~~~~~~~~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~--  161 (229)
T d2d2sa1          86 VHLKSGTENMIKLGLP--EQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAK--  161 (229)
T ss_dssp             HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH--
T ss_pred             HHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch--
Confidence            9999999999999975  79999999999999999999886 458899999999999999999999999999886532  


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhhhhhcccchhhhcchHHHHHHH
Q 008368          281 ENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVL  350 (568)
Q Consensus       281 ~~~~~s~l~~w~~~~v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~SL~rvG~DF~~ll~~l~~~~~~  350 (568)
                         ..+.|+.|+.+++..|+.+++++++...  .....-+..|+++|.+|+++|+||+++|.++|++.+.
T Consensus       162 ---~sS~lv~Wa~~ei~~f~~~l~r~l~~~~--~~~~~~i~~~~~~c~~L~~vGlDf~~lL~~ll~~~~~  226 (229)
T d2d2sa1         162 ---ISSILVDWCSDEVDNHFKLIDKQLLNDE--MLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSD  226 (229)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGG
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHcccch--hHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHhhHH
Confidence               2478999999999999999999998532  2234457888899999999999999999999987553