Citrus Sinensis ID: 008377

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSMLKYF
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccEEEEEcccccccccEEEEEEEEccccccccEEccccEEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHccEEccccccccccccccccEEEEEEEccEEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccc
cccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHEEEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHcccccccHHcEEEEEEccccccccEEEEEEEEEccccccccEccccEEEEEcccEEEcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHccEEEEcHHHccHHHcccccEEEEEEccccEEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEccccEccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHcHHHHHHHHHHHHHHHHHHHHHHc
mgfsmqpygIQSMLKEGHKHMSGLDEAVLKNIDACKQLstitrtslgpngmnKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAqqeeigdganlTISFAGEILQGAEELIRmglhpseiISGYTKAINKTIEVLEELVEEgsenmdvrnTEEVIYRMKAAVASkqfgqeeilcpliadaciqvcpknpanfnvdNVRVAKLLggglhnstiVRGMVLKSDAVGSIKNMEKAKVAVFAggvdtsatetkgtVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKlcqpnpddlgyvdsvsVEEIGGARVTIVrnegggnsVSTVVLRGSTDSILDDLERAVDDGVNTYkamcrdsrivpgAAATEIELARRLKEfsfketglDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEhasgktkvgidlengvcadistmNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIInrdclftrclncsfSYKWLCSIFSRKLTILADSMLKYF
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTitrtslgpngMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELveegsenmdvrnTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGgglhnstivRGMVLKSDAVGSIKNMEKAKVAVFAGgvdtsatetkgtvLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLklcqpnpddlgYVDSVSVEEIGGARvtivrnegggnsvsTVVLRGstdsilddLERAVDDGVNtykamcrdsrivpGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSMLKYF
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIevleelveeGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSMLKYF
************************DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEG***MDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSML***
***************************VLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL*****************SFSYKWLCSIFSRKLTILADSMLKYF
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSMLKYF
******PYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSMLKYF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNxxxxxxxxxxxxxxxxxxxxxVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDCLFTRCLNCSFSYKWLCSIFSRKLTILADSMLKYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
Q552J0537 T-complex protein 1 subun yes no 0.906 0.959 0.514 1e-160
Q6EE31548 T-complex protein 1 subun yes no 0.904 0.937 0.500 1e-152
A8X6I9548 T-complex protein 1 subun N/A no 0.920 0.954 0.462 1e-147
P42932548 T-complex protein 1 subun yes no 0.904 0.937 0.502 1e-147
Q9N358548 T-complex protein 1 subun yes no 0.920 0.954 0.468 1e-145
Q3ZCI9548 T-complex protein 1 subun yes no 0.904 0.937 0.506 1e-145
Q4R5J0548 T-complex protein 1 subun N/A no 0.904 0.937 0.500 1e-142
Q5RAP1548 T-complex protein 1 subun yes no 0.904 0.937 0.500 1e-141
P50990548 T-complex protein 1 subun yes no 0.904 0.937 0.500 1e-141
P78921546 Probable T-complex protei yes no 0.901 0.937 0.450 1e-134
>sp|Q552J0|TCPQ_DICDI T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1 Back     alignment and function desciption
 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/517 (51%), Positives = 377/517 (72%), Gaps = 2/517 (0%)

Query: 9   GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDA 68
           G+  MLK+G KH +G DEA+L+NIDA KQLS ITRTSLGPNGMNKM+INHL+KLFVTNDA
Sbjct: 3   GLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNGMNKMIINHLEKLFVTNDA 62

Query: 69  ATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEII 128
           ATI+ EL+V HPAAK+LV+A + Q++E+GDG N  ++  GE LQ A  L+ MGLHPSEII
Sbjct: 63  ATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEII 122

Query: 129 SGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADAC 188
           +G+ KA  K  E++E ++    +  D+ + +EV   +K+A+ASKQ+G EE L  +I +AC
Sbjct: 123 TGFEKAGAKLQEIIESMIVYNLK--DITDKKEVTKCLKSAIASKQYGYEEFLSEIITNAC 180

Query: 189 IQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
           +QV PK   NFN+DNVRV K+ GGG+ ++++++G V+  DA G+IK MEKAK+AVF  G+
Sbjct: 181 LQVLPKKAVNFNIDNVRVTKIPGGGVTDTSVIKGFVIPMDAEGTIKRMEKAKIAVFTMGI 240

Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308
           D   TET G VLI N ++L  ++K EE  +   I A+A +G +VI+SG+ V E+ALH+ E
Sbjct: 241 DLGRTETTGKVLITNEDELLQFSKGEEDSIRETITAIANTGVKVIISGSTVSELALHYIE 300

Query: 309 RYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNE 368
           R+K+M+++I SKF+LRR C+  GA  ++KL  P P++LGY D V VEEIG  +  I R  
Sbjct: 301 RFKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVLVEEIGSTKCCIFRQN 360

Query: 369 GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 428
              + +ST+V+RGST++ILDD+ERA+DDGVN +K MC+D R + GA A EIE +R+L+ F
Sbjct: 361 KEESEISTIVVRGSTNNILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAF 420

Query: 429 SFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488
           +    GL QY+I ++AE+FE++P+TLAE +G ++ + IS++YA H  G T  G+D+E+G 
Sbjct: 421 ADATPGLSQYSIRQYAEAFEIIPRTLAETSGHDSSKAISNIYAAHTKGNTNYGLDIESGQ 480

Query: 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
              +  M+V D + +K FA+K A + A TVLRVDQ++
Sbjct: 481 PKSVLEMDVLDAFASKLFAIKLATNTANTVLRVDQII 517
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Dictyostelium discoideum (taxid: 44689)
>sp|Q6EE31|TCPQ_CHICK T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3 Back     alignment and function description
>sp|A8X6I9|TCPQ_CAEBR T-complex protein 1 subunit theta OS=Caenorhabditis briggsae GN=cct-8 PE=3 SV=1 Back     alignment and function description
>sp|P42932|TCPQ_MOUSE T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3 Back     alignment and function description
>sp|Q9N358|TCPQ_CAEEL T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=cct-8 PE=1 SV=3 Back     alignment and function description
>sp|Q3ZCI9|TCPQ_BOVIN T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=1 SV=3 Back     alignment and function description
>sp|Q4R5J0|TCPQ_MACFA T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAP1|TCPQ_PONAB T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3 Back     alignment and function description
>sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4 Back     alignment and function description
>sp|P78921|TCPQ_SCHPO Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct8 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
356498779545 PREDICTED: T-complex protein 1 subunit t 0.924 0.963 0.891 0.0
225441629545 PREDICTED: T-complex protein 1 subunit t 0.924 0.963 0.901 0.0
449446760545 PREDICTED: T-complex protein 1 subunit t 0.924 0.963 0.899 0.0
356559540545 PREDICTED: T-complex protein 1 subunit t 0.924 0.963 0.891 0.0
224145979545 predicted protein [Populus trichocarpa] 0.924 0.963 0.891 0.0
224123784545 predicted protein [Populus trichocarpa] 0.924 0.963 0.900 0.0
118482230545 unknown [Populus trichocarpa] 0.924 0.963 0.889 0.0
118486950545 unknown [Populus trichocarpa] 0.924 0.963 0.899 0.0
217074778540 unknown [Medicago truncatula] gi|3885166 0.911 0.959 0.891 0.0
302399069541 TCP domain class transcription factor [M 0.917 0.963 0.884 0.0
>gi|356498779|ref|XP_003518226.1| PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] Back     alignment and taxonomy information
 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/525 (89%), Positives = 507/525 (96%)

Query: 1   MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
           MGF++QPYGIQSMLKEGHKH+SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD
Sbjct: 1   MGFNIQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60

Query: 61  KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
           KLFVTNDA TIVNELEVQHPAAK+LVLAGKAQQEEIGDGANLTISFAGE+LQGAEELIRM
Sbjct: 61  KLFVTNDAGTIVNELEVQHPAAKVLVLAGKAQQEEIGDGANLTISFAGELLQGAEELIRM 120

Query: 121 GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
           GLHPSEIISGYTKAINKT+++L+ELVE+GS+NMDVR+ E+VI RMKAAVASKQFGQE+I+
Sbjct: 121 GLHPSEIISGYTKAINKTVQILDELVEDGSDNMDVRDKEQVISRMKAAVASKQFGQEDII 180

Query: 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
           C L+ADACIQVCPKNPANFNVDNVRVAKLLGGGLHNST+VRG+VLKSDAVG+IK  EKAK
Sbjct: 181 CSLVADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTVVRGLVLKSDAVGTIKQAEKAK 240

Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
           VAVFA GVDTSATETKGTVLIH AEQLENY+KTEEAKVE LIKAVA+SGA+VIVSG AVG
Sbjct: 241 VAVFASGVDTSATETKGTVLIHTAEQLENYSKTEEAKVEELIKAVADSGAKVIVSGGAVG 300

Query: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGA 360
           EMALHFCERYKLMVLKISSKFELRRFCRTTG+VAMLKLCQPNPDDLGYVDSVSV+EIGG 
Sbjct: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLCQPNPDDLGYVDSVSVQEIGGV 360

Query: 361 RVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420
           RVTIV+NE GGNSV+TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR VPGAAATEIE
Sbjct: 361 RVTIVKNEEGGNSVATVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRFVPGAAATEIE 420

Query: 421 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 480
           LA+R+K+FSFKETGLDQYAIAKFAESFEM+P+TLAENAGLNAMEIISSLYAEHASG  KV
Sbjct: 421 LAKRVKDFSFKETGLDQYAIAKFAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNAKV 480

Query: 481 GIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
           GIDLE G+C D+ST+++WDL+VTK FALKYAADAACTVLRVDQ++
Sbjct: 481 GIDLEEGICKDVSTLSIWDLHVTKLFALKYAADAACTVLRVDQII 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441629|ref|XP_002282088.1| PREDICTED: T-complex protein 1 subunit theta [Vitis vinifera] gi|297739754|emb|CBI29936.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449446760|ref|XP_004141139.1| PREDICTED: T-complex protein 1 subunit theta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559540|ref|XP_003548057.1| PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] Back     alignment and taxonomy information
>gi|224145979|ref|XP_002325835.1| predicted protein [Populus trichocarpa] gi|222862710|gb|EEF00217.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123784|ref|XP_002319163.1| predicted protein [Populus trichocarpa] gi|222857539|gb|EEE95086.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118482230|gb|ABK93043.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486950|gb|ABK95308.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074778|gb|ACJ85749.1| unknown [Medicago truncatula] gi|388516695|gb|AFK46409.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|302399069|gb|ADL36829.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
TAIR|locus:2095948549 AT3G03960 [Arabidopsis thalian 0.924 0.956 0.830 9.3e-233
DICTYBASE|DDB_G0276233537 cct8 "chaperonin containing TC 0.906 0.959 0.510 4.8e-142
ZFIN|ZDB-GENE-040426-876546 cct8 "chaperonin containing TC 0.904 0.941 0.500 1.7e-139
UNIPROTKB|I3LCA2548 CCT8 "Uncharacterized protein" 0.904 0.937 0.500 4e-138
UNIPROTKB|Q3ZCI9548 CCT8 "T-complex protein 1 subu 0.904 0.937 0.499 1.1e-137
UNIPROTKB|E2RQ81548 CCT8 "Uncharacterized protein" 0.904 0.937 0.493 1.7e-137
UNIPROTKB|J9NRN0709 CCT8 "Uncharacterized protein" 0.904 0.724 0.493 1.7e-137
UNIPROTKB|P50990548 CCT8 "T-complex protein 1 subu 0.904 0.937 0.493 7.4e-137
RGD|1305452548 Cct8 "chaperonin containing Tc 0.904 0.937 0.493 7.4e-137
UNIPROTKB|Q6EE31548 CCT8 "T-complex protein 1 subu 0.904 0.937 0.493 9.5e-137
TAIR|locus:2095948 AT3G03960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2245 (795.3 bits), Expect = 9.3e-233, P = 9.3e-233
 Identities = 436/525 (83%), Positives = 478/525 (91%)

Query:     1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
             +G SMQPYGIQSMLKEG++H+SGLDEAV+KNI+ACK+LSTITRTSLGPNGMNKMVINHLD
Sbjct:     2 VGMSMQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLD 61

Query:    61 KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
             KLFVTNDAATIVNELE+QHPAAKLLVLA KAQQEEIGDGANLTISFAGE+LQ AEELIRM
Sbjct:    62 KLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRM 121

Query:   121 GLHPSEIISGYTKAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
             GLHPSEIISGYTKA++K +         GSE MDVRN +EVI RM+AAVASKQFGQEEI+
Sbjct:   122 GLHPSEIISGYTKAVSKAVEILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEII 181

Query:   181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
             C L+ DACIQVCPKNP NFNVDNVRV+KLLGGGLHNS IVRGMVLKSDAVGSIK MEKAK
Sbjct:   182 CSLVTDACIQVCPKNPTNFNVDNVRVSKLLGGGLHNSCIVRGMVLKSDAVGSIKRMEKAK 241

Query:   241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
             VAVFAGGVDT+ATETKGTVLIH+AEQLENYAKTEEAKVE LIKAVAESGA+VIVSG ++G
Sbjct:   242 VAVFAGGVDTTATETKGTVLIHSAEQLENYAKTEEAKVEELIKAVAESGAKVIVSGGSIG 301

Query:   301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGA 360
             EMALHFCERYK+MVLKISSKFELRRFCRT GAVA LKL +P+P+DLGYVDS+SVEEIGG 
Sbjct:   302 EMALHFCERYKIMVLKISSKFELRRFCRTAGAVAHLKLSRPSPEDLGYVDSISVEEIGGV 361

Query:   361 RVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420
              VTI RNE GGNS+STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE
Sbjct:   362 TVTIARNEEGGNSISTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 421

Query:   421 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 480
             LA+RLKE++  E GLD+YAI K+AESFE VPKTLA+NAGLNAMEII++LY  H SG TK+
Sbjct:   422 LAQRLKEYANAEIGLDKYAITKYAESFEFVPKTLADNAGLNAMEIIAALYTGHGSGNTKL 481

Query:   481 GIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
             GIDLE G C D+S   VWDL+ TK FALKYA+DAACTVLRVDQ++
Sbjct:   482 GIDLEEGACKDVSETKVWDLFATKLFALKYASDAACTVLRVDQII 526
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
DICTYBASE|DDB_G0276233 cct8 "chaperonin containing TCP1 theta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-876 cct8 "chaperonin containing TCP1, subunit 8 (theta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LCA2 CCT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCI9 CCT8 "T-complex protein 1 subunit theta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ81 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRN0 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P50990 CCT8 "T-complex protein 1 subunit theta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305452 Cct8 "chaperonin containing Tcp1, subunit 8 (theta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6EE31 CCT8 "T-complex protein 1 subunit theta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R5J0TCPQ_MACFANo assigned EC number0.50090.90490.9379N/Ano
Q9N358TCPQ_CAEELNo assigned EC number0.46850.92070.9543yesno
Q9V2T5THSA_SULACNo assigned EC number0.33580.89080.9068yesno
Q9HN70THSA_HALSANo assigned EC number0.30810.89430.9039yesno
Q6EE31TCPQ_CHICKNo assigned EC number0.50090.90490.9379yesno
P42932TCPQ_MOUSENo assigned EC number0.50280.90490.9379yesno
P50990TCPQ_HUMANNo assigned EC number0.50090.90490.9379yesno
Q552J0TCPQ_DICDINo assigned EC number0.51450.90660.9590yesno
P48424THSA_THEACNo assigned EC number0.30320.88380.9211yesno
P50016THS_METKANo assigned EC number0.31790.89080.9284yesno
O24734THSA_SULTONo assigned EC number0.32890.89080.9051yesno
Q9V2S9THSA_SULSONo assigned EC number0.32130.89080.9051yesno
Q9V2Q7THS_PYRABNo assigned EC number0.33070.88900.9181yesno
O26885THSB_METTHNo assigned EC number0.33140.89430.9442yesno
O57762THS_PYRHONo assigned EC number0.32880.88900.9198yesno
Q5RAP1TCPQ_PONABNo assigned EC number0.50090.90490.9379yesno
Q9YDK6THSA_AERPENo assigned EC number0.33390.88900.9115yesno
P61111THSA_PYRKONo assigned EC number0.33270.90310.9361yesno
P47079TCPQ_YEASTNo assigned EC number0.43470.89780.8978yesno
P78921TCPQ_SCHPONo assigned EC number0.45060.90140.9377yesno
O30561THS1_HALVDNo assigned EC number0.31760.90310.9160yesno
Q3ZCI9TCPQ_BOVINNo assigned EC number0.50670.90490.9379yesno
Q58405THS_METJANo assigned EC number0.30930.85910.9003yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
  ••••••0.699
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.679
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.655
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.612
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.608
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.583
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.561
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.553
GSVIVG00031075001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa)
  ••    0.530
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •    0.519

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 0.0
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-161
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-150
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-118
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-112
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-106
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 5e-94
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-87
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 5e-76
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 6e-76
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-74
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 7e-73
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 2e-70
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-70
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 4e-68
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 2e-60
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 3e-60
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-57
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 2e-56
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 3e-52
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-45
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 3e-34
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 5e-33
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 4e-05
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-04
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 2e-04
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.003
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 0.004
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information 
 Score =  804 bits (2079), Expect = 0.0
 Identities = 320/519 (61%), Positives = 405/519 (78%), Gaps = 4/519 (0%)

Query: 9   GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDA 68
           GI S+LKEG++HMSGL+EAV+KNI+ACK+LS ITRTSLGPNGMNKMVINHLDKLFVTNDA
Sbjct: 1   GIASLLKEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDA 60

Query: 69  ATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEII 128
           ATI+ ELEVQHPAAKLLV+A + Q+ EIGDG NL I  AGE+L  AEELIRMGLHPSEII
Sbjct: 61  ATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEII 120

Query: 129 SGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADAC 188
            GY  A+ K +EVLEELV    E  D+R+ +E+I  +KA+++SKQ+G E+ L  L+A AC
Sbjct: 121 KGYEMALKKAMEVLEELVV--WEIEDLRDKKELIKALKASISSKQYGNEDFLSQLVAKAC 178

Query: 189 IQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
             V PKNP NFNVDN+RV K++GG L NS +++GMV   +A GS+K ++KAKVAVF+  +
Sbjct: 179 STVLPKNPQNFNVDNIRVVKIMGGSLSNSEVIKGMVFNREAEGSVKRVKKAKVAVFSCPL 238

Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308
           DT+ TETKGTVLIHNAE+L NY+K EE ++E +IKA+A+SG  VIV+G +VG+MALH+  
Sbjct: 239 DTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMALHYLN 298

Query: 309 RYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNE 368
           RY +MVLKI SKFELRR C+T GA  + +L  P P++LGYVDSV V EIGG +VT+ + E
Sbjct: 299 RYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQE 358

Query: 369 GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 428
            G + +ST++LRGST ++LDD+ERA+DDGVN  KA+ +D R +PGA ATEIELA RL ++
Sbjct: 359 NGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKY 418

Query: 429 SFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488
           + K  GLDQYAI KFAE+FE++P+TLAENAGLN  E+I  LYA H  G T  GID+E   
Sbjct: 419 AEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSKGIDIEAES 478

Query: 489 CA--DISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
               D S   ++D+  TK FA+K A +AA TVLRVDQ++
Sbjct: 479 DGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQII 517

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.79
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-110  Score=823.87  Aligned_cols=510  Identities=27%  Similarity=0.458  Sum_probs=489.0

Q ss_pred             cccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHH
Q 008377           10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG   89 (568)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~   89 (568)
                      ...++|+++..++|- .++.+|+.||..+++.++|||||+|+||+|+++.|+++|||||+||||.|++-||+|+.|++.+
T Consensus         5 ~ii~lkegtd~sqGk-~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia   83 (543)
T KOG0361|consen    5 PIILLKEGTDPSQGK-GQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIA   83 (543)
T ss_pred             CEEEeecccCcccCc-hhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHH
Confidence            455689999998885 6789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC----CHHHHHHHH
Q 008377           90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVR----NTEEVIYRM  165 (568)
Q Consensus        90 ~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~----~~~~l~~i~  165 (568)
                      ++||.++||||||||+|++++|+++..+++.|+||+.|+.+|+.|...+++.++++++..    +..    -++.|++++
T Consensus        84 ~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i----~~~~~~~~r~lL~KcA  159 (543)
T KOG0361|consen   84 RSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEI----DGSSKTELRELLEKCA  159 (543)
T ss_pred             hhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEe----cccchhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998762    222    267789999


Q ss_pred             HHhhhccc-cCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecC-----CCCcccccCc
Q 008377          166 KAAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEKA  239 (568)
Q Consensus       166 ~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~-----~~~~~~i~n~  239 (568)
                      .|+++||+ .++.++|+++++||+..+..    ..+++.|.|.|++||+++||.+++|+.|++.|     +.+|+++.||
T Consensus       160 ~T~lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~Np  235 (543)
T KOG0361|consen  160 ATALSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNP  235 (543)
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCc
Confidence            99999996 56789999999999998852    36778999999999999999999999999865     5689999999


Q ss_pred             eEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377          240 KVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS  319 (568)
Q Consensus       240 kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~  319 (568)
                      ||+++|.+||.+.++.+++++++++++++.+++.||+.+.++++++...|+|||++.-.|.|.|.|||++++|+|..|++
T Consensus       236 kIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~  315 (543)
T KOG0361|consen  236 KILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVP  315 (543)
T ss_pred             eEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHH
Q 008377          320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN  399 (568)
Q Consensus       320 ~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~  399 (568)
                      .+||.|+..++|++++++..++.++.+|.|..++++++|++||.+|++|+. .+.||++|||+.+++++|.+|++|||++
T Consensus       316 ~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~-aktcTliLRGgaeqfieE~eRSlHDAIm  394 (543)
T KOG0361|consen  316 EEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPK-AKTCTLILRGGAEQFIEETERSLHDAIM  394 (543)
T ss_pred             HHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCc-cceeEEEEeccHHHHHHHHhhhhhhHHH
Confidence            999999999999999999999999999999999999999999999999984 8999999999999999999999999999


Q ss_pred             HHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 008377          400 TYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK  479 (568)
Q Consensus       400 ~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~  479 (568)
                      ++|.++++..||+|||++||++|++||+|+.++.+++|+.+.+|++|||.|||+||+|+|+|..+++++||.+|.+|..|
T Consensus       395 IVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w  474 (543)
T KOG0361|consen  395 IVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKW  474 (543)
T ss_pred             HHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377          480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI  529 (568)
Q Consensus       480 ~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~  529 (568)
                      +|+|++++.+.|+++.+||||..||++++..|+|+|++||.+|+.|...+
T Consensus       475 ~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~  524 (543)
T KOG0361|consen  475 YGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPK  524 (543)
T ss_pred             eeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCc
Confidence            99999999999999999999999999999999999999999999998754

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-141
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-121
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-78
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 8e-78
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-77
1a6d_A545 Thermosome From T. Acidophilum Length = 545 3e-67
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 4e-66
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-64
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 5e-63
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 6e-63
3izi_A513 Mm-Cpn Rls With Atp Length = 513 2e-62
3izh_A513 Mm-Cpn D386a With Atp Length = 513 3e-62
1a6d_B543 Thermosome From T. Acidophilum Length = 543 7e-58
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 2e-57
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 6e-57
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 7e-57
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-56
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 7e-56
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-55
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 2e-55
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-55
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-51
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-50
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-50
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-50
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-43
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-42
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-42
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-41
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-41
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-29
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-21
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 2e-07
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 1e-04
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure 
Iteration: 1

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/512 (49%), Positives = 368/512 (71%), Gaps = 5/512 (0%)
Query: 16  EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNEL 75
           EG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLFVTNDAATI+ EL
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 76  EVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
           EVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A 
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 136 NKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKN 195
            K            ++N+  R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P +
Sbjct: 121 KKAHEILPDLVCCSAKNL--RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFP-D 177
Query: 196 PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255
             +FNVDN+RV K+LG G+H+S+++ GMV K +  G + +++ AK+AV++   D   TET
Sbjct: 178 SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237
Query: 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315
           KGTVLI +AE+L N++K EE  ++  +KA+A++GA V+V+G  V +MALH+  +Y +M++
Sbjct: 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297
Query: 316 KISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS 375
           +++SK++LRR C+T GA A+ +L  P  +++G+ DSV + E+G  +V + ++E    ++S
Sbjct: 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 357
Query: 376 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGL 435
           T+VLRGSTD+++DD+ERAVDDGVNT+K + RD R+VPG  ATEIELA+++  +     GL
Sbjct: 358 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGL 417
Query: 436 DQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCA--DIS 493
           +QYAI KFAE+FE +P+ LAEN+G+ A E+IS LYA H  G   VG+D+E  V A  D+ 
Sbjct: 418 EQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477
Query: 494 TMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
              V D Y+ K++A+K A +AA TVLRVDQ++
Sbjct: 478 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 509
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-137
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-135
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-135
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-135
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-134
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-134
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 1e-133
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-132
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-132
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-132
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-131
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-131
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-130
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-130
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-128
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-128
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-128
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-126
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 1e-120
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-111
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-20
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
 Score =  631 bits (1629), Expect = 0.0
 Identities = 257/511 (50%), Positives = 372/511 (72%), Gaps = 5/511 (0%)

Query: 16  EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNEL 75
           EG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLFVTNDAATI+ EL
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60

Query: 76  EVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
           EVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A 
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120

Query: 136 NKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKN 195
            K  E+L +LV   ++  ++R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P +
Sbjct: 121 KKAHEILPDLVCCSAK--NLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDS 178

Query: 196 PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255
             +FNVDN+RV K+LG G+H+S+++ GMV K +  G + +++ AK+AV++   D   TET
Sbjct: 179 G-HFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237

Query: 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315
           KGTVLI +AE+L N++K EE  ++  +KA+A++GA V+V+G  V +MALH+  +Y +M++
Sbjct: 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297

Query: 316 KISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS 375
           +++SK++LRR C+T GA A+ +L  P  +++G+ DSV + E+G  +V + ++E    ++S
Sbjct: 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 357

Query: 376 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGL 435
           T+VLRGSTD+++DD+ERAVDDGVNT+K + RD R+VPG  ATEIELA+++  +     GL
Sbjct: 358 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGL 417

Query: 436 DQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV--CADIS 493
           +QYAI KFAE+FE +P+ LAEN+G+ A E+IS LYA H  G   VG+D+E  V    D+ 
Sbjct: 418 EQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477

Query: 494 TMNVWDLYVTKFFALKYAADAACTVLRVDQV 524
              V D Y+ K++A+K A +AA TVLRVDQ+
Sbjct: 478 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQI 508
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.06
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.04
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.0
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
Probab=100.00  E-value=3.1e-114  Score=950.30  Aligned_cols=527  Identities=43%  Similarity=0.735  Sum_probs=490.4

Q ss_pred             CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh
Q 008377            1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP   80 (568)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP   80 (568)
                      |+|++|+.+...+|++++++++|.++++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP   80 (568)
T 3p9d_H            1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP   80 (568)
T ss_dssp             ----CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCH
T ss_pred             CCCCCCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCH
Confidence            88999999999999999999999778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHH
Q 008377           81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE  160 (568)
Q Consensus        81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~  160 (568)
                      +|+|++++|++|++++||||||++||+++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+...  |..+++.
T Consensus        81 ~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~--~~~~~~~  158 (568)
T 3p9d_H           81 AVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEIT--DKNDKNE  158 (568)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCC--CCCTTHH
T ss_pred             HHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999886432  5568899


Q ss_pred             HHHHHHHhhhccccCcccchHHHHHHHHHHhcCC-----CCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCccc
Q 008377          161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPK-----NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKN  235 (568)
Q Consensus       161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~-----~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~  235 (568)
                      |.++++|+++||+.+++++|++++++|+.+++++     +...||+++|+|++++||+++||++++|++|++++.+||++
T Consensus       159 l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~  238 (568)
T 3p9d_H          159 LLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS  238 (568)
T ss_dssp             HHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSSGGGS
T ss_pred             HHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccCCcEE
Confidence            9999999999998766699999999999999764     33458999999999999999999999999999999999999


Q ss_pred             cc---CceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCe
Q 008377          236 ME---KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL  312 (568)
Q Consensus       236 i~---n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I  312 (568)
                      ++   ||||++++++|++++++.++++.+++++++.++.++|++++++++++|++.|+||||++++|++.+++||.++||
T Consensus       239 i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI  318 (568)
T 3p9d_H          239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGI  318 (568)
T ss_dssp             CCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTC
T ss_pred             EecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCe
Confidence            99   999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC-CCceEEEEEcCCChhHHHHHH
Q 008377          313 MVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLE  391 (568)
Q Consensus       313 ~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~  391 (568)
                      ++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. +++.+||+|||+|+.+++|.|
T Consensus       319 ~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~e  398 (568)
T 3p9d_H          319 LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE  398 (568)
T ss_dssp             EEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999972 388999999999999999999


Q ss_pred             HHHhhHHHHHHHHHh--CCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH
Q 008377          392 RAVDDGVNTYKAMCR--DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL  469 (568)
Q Consensus       392 r~i~dal~~l~~~~~--~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L  469 (568)
                      |+++|||+++|++++  ++++|||||++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|
T Consensus       399 r~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l  478 (568)
T 3p9d_H          399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNL  478 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC--------CCCceeEeccCCc---ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377          470 YAEHAS--------GKTKVGIDLENGV---CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI  529 (568)
Q Consensus       470 ~~~~~~--------~~~~~Gid~~~~~---~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~  529 (568)
                      ++.|.+        ++.++|||+.+|+   +.||++.|||||+.||+++|+.|+|+|++|||||++|..+|
T Consensus       479 ~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~  549 (568)
T 3p9d_H          479 YAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKK  549 (568)
T ss_dssp             HHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC-----------
T ss_pred             HHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Confidence            999865        5568999999997   99999999999999999999999999999999999999876
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 568
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 7e-35
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 6e-25
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-33
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 5e-25
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 9e-29
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-16
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 2e-27
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 3e-26
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 1e-24
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-23
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 8e-17
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 9e-17
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-14
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-09
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 5e-12
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 9e-10
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 9e-05
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-04
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  129 bits (326), Expect = 7e-35
 Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 25  DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKL 84
             A   NI+A K ++   RT+LGP GM+KM+++ +  + ++ND ATI+ E++V+HP AK+
Sbjct: 5   KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM 64

Query: 85  LVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE 144
           +V   KAQ   +GDG    +  +GE+L+ AE L+  G+HP+ I +GY  A+N+  ++++E
Sbjct: 65  IVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 124

Query: 145 LVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNV 204
           + E+           E+  R+ A  A+   G+E++     A A   +      N  +D +
Sbjct: 125 IAEKSFLWGGGAVEAELAMRL-AKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPI 183

Query: 205 RVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNM---EKAKVAVFAGGVDTSATETKGTVL 260
                L        I  G+ L ++ VG +K     +  +V   A     SA E    +L
Sbjct: 184 NTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHA---LESAVEVATMIL 239
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.96
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.95
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.9
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.55
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.53
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.37
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.06
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.04
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.03
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.96
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 90.99
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 89.19
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 82.1
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 81.14
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=2.4e-52  Score=409.46  Aligned_cols=242  Identities=38%  Similarity=0.611  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHHHH
Q 008377           26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTIS  105 (568)
Q Consensus        26 ~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vl  105 (568)
                      ++++.|+.||+.+++++++||||+|++|||+++.|++++||||+||++++.++||.++++.+++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccchHHHHH
Q 008377          106 FAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIA  185 (568)
Q Consensus       106 L~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~ls~lv~  185 (568)
                      |+++||+++.+++.+|+||..|++||+.|++.+++.|++++.+.    .                               
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v----~-------------------------------  126 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKI----A-------------------------------  126 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEC----E-------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccc----c-------------------------------
Confidence            99999999999999999999999999999999998888765431    0                               


Q ss_pred             HHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCcccccCceEEEEeeccccccccccceEEecCHH
Q 008377          186 DACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAE  265 (568)
Q Consensus       186 ~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~  265 (568)
                                   +.         +                                                       
T Consensus       127 -------------~~---------~-------------------------------------------------------  129 (243)
T d1a6db1         127 -------------YA---------A-------------------------------------------------------  129 (243)
T ss_dssp             -------------EE---------E-------------------------------------------------------
T ss_pred             -------------cc---------c-------------------------------------------------------
Confidence                         00         0                                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCCCCCCC
Q 008377          266 QLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDD  345 (568)
Q Consensus       266 ~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~  345 (568)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (243)
T d1a6db1         130 --------------------------------------------------------------------------------  129 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHH
Q 008377          346 LGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRL  425 (568)
Q Consensus       346 lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L  425 (568)
                                                                                         |||++|+.+|..|
T Consensus       130 -------------------------------------------------------------------ggGa~e~~~a~~l  142 (243)
T d1a6db1         130 -------------------------------------------------------------------GGGATAAEIAFRL  142 (243)
T ss_dssp             -------------------------------------------------------------------TTTHHHHHHHHHH
T ss_pred             -------------------------------------------------------------------CCCchhHHHHHHH
Confidence                                                                               6999999999999


Q ss_pred             HhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHH
Q 008377          426 KEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKF  505 (568)
Q Consensus       426 ~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~  505 (568)
                      +++++++++.+|+++++||+||+.||++|++|+|+|+.+++.+|+..|.+++.++|+|..+|++.||.+.|||||+.+|+
T Consensus       143 ~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~  222 (243)
T d1a6db1         143 RSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGK  222 (243)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHH
T ss_pred             hhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchhHHhh
Q 008377          506 FALKYAADAACTVLRVDQVLK  526 (568)
Q Consensus       506 ~~l~~A~e~a~~iL~iD~ii~  526 (568)
                      ++|+.|+|+|++|||||+||.
T Consensus       223 ~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         223 QAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999873
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure