Citrus Sinensis ID: 008386


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
MDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPPTNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQQPETGPNPGSMNSFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFADSQRQENGGNQHVQ
ccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccHHcccccHHHHHHHHHccccccccEEEEEccEEEEcccHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcHHHHHHHHHHcccccEEEEEcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHcHHHHHHHHccccccccccccccccccc
cccccccEEccHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccHHHHcHHHHHHHccccccccEEEEEEHHcccEEccHHHHHHccccEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHHccccccEEEEEEcccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccEEEccEEEccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccc
MDADGLTFSAANLWLNWIHSNVRKGKLALKFWrtdmepvehlaegsvssqsfkptdsavnkidkeeARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLEnrtkafeptylytmekgyfllpeadksrhniRTFNIsisaqhpcfgnRWQQLLINRFVGYDTILMNsllhtpgqgylyncqtkefynlsyaqeppegpakfgdYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIsvrtpismkffpRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTqlqqqpdfhitsstILASTLHITrlntrnpslpntdatsgpglrpgsnqampptnrvdapgpersennnpdrvgntmeipgqpdlqqpetgpnpgsmnsFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFadsqrqenggnqhvq
MDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLaegsvssqsfkptDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLntrnpslpntdatsgpglrpgsnqampptnrvdapgpersennnpdrvGNTMEIPGQPDLQQPETGPNPGSMNSFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFadsqrqenggnqhvq
MDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVlmmslfvfftttmsvsftlRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQllaflvlilvwlCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPPTNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQQPETGPNPGSMNSFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFADSQRQENGGNQHVQ
*****LTFSAANLWLNWIHSNVRKGKLALKFWRTDM************************************LSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRL***************************************************************************SSLLLWILGGASSEGLNSFLSMFRD***********************
*****LTFSAANLWLNWIHSNVRKGKLALKFWRTD***********************************************IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFI************************************************************************************************************LLWILGGASSEGLNSFLSMFRDVREQ*******************
MDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEH***************SAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPPTNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQQPETGPNPGSMNSFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFADS************
****GLTFSAANLWLNWIHSNVRKGKLALKFWRTD**********************AVNKI****ARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLNT**********************************************************************NSFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFA**************
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MDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPPTNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQQPETGPNPGSMNSFSSLLLWILGGASSEGLNSFLSMFRDVREQGQVFADSQRQENGGNQHVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query567 2.2.26 [Sep-21-2011]
Q8CIV2574 Membralin OS=Mus musculus yes no 0.523 0.517 0.271 6e-26
Q4ZIN3620 Membralin OS=Homo sapiens yes no 0.520 0.475 0.275 2e-25
>sp|Q8CIV2|MBRL_MOUSE Membralin OS=Mus musculus GN=ORF61 PE=1 SV=2 Back     alignment and function desciption
 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 160/332 (48%), Gaps = 35/332 (10%)

Query: 156 YTMEKGYFLLPEADKSRHNIRTFNISIS-AQHPCFGNRWQQLLINRFVGYDTILMNSLL- 213
           Y++E G+  L +A + R +I    +++   +  CFG+R+ +LL++ F+GYD ILM+S+  
Sbjct: 204 YSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKG 263

Query: 214 ---HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSV 270
              +   +G+L N  + E Y             +F    + +   L  +  +    T+SV
Sbjct: 264 LAENEENKGFLRNVVSGEHY-------------RFVSMWMARTSYLA-AFVIMVIFTLSV 309

Query: 271 SFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQ 330
           S  LR +  ++  F V L    +  +     I       L  +  ++G+   + EF++D 
Sbjct: 310 SMLLRYSHHQIFVFIVDLLQMLEMNM----AIAFPAAPLLTVILALVGMEAIMSEFFNDT 365

Query: 331 LLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTA 390
             AF +++ VWL + +  I   T  S + + RFF LY   F+ Y + +   +S +AL T+
Sbjct: 366 TTAFYIILTVWLADQYDAICCHTNTSKRHWLRFFYLYHFAFYAYHYRFNGQYSSLALVTS 425

Query: 391 AAFVQHLILYFWNHFEVPALQRFIQNRRTQ--LQQQPDFHITSSTILASTLHITRLNTRN 448
             F+QH ++YF++H+E+PA+   +Q  R Q  L Q P     + T L   L+    N+ +
Sbjct: 426 WLFIQHSMIYFFHHYELPAI---LQQIRIQEMLLQTPPLGPGTPTALPDDLNN---NSGS 479

Query: 449 PSLPNTDATSGPGLRPGSNQAMPPTNRVDAPG 480
           P+ P+      P L  G + +  PT     PG
Sbjct: 480 PATPD----PSPPLALGPSSSPAPTGGASGPG 507





Mus musculus (taxid: 10090)
>sp|Q4ZIN3|MBRL_HUMAN Membralin OS=Homo sapiens GN=C19orf6 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query567
255577332 672 Membralin, putative [Ricinus communis] g 0.998 0.842 0.790 0.0
147858172 673 hypothetical protein VITISV_036910 [Viti 0.998 0.841 0.784 0.0
356558483 680 PREDICTED: uncharacterized protein LOC10 0.977 0.814 0.784 0.0
224054256661 predicted protein [Populus trichocarpa] 0.973 0.835 0.775 0.0
357445483 675 Membralin [Medicago truncatula] gi|35548 0.992 0.834 0.741 0.0
449457053 669 PREDICTED: uncharacterized protein LOC10 0.987 0.837 0.710 0.0
356525964616 PREDICTED: uncharacterized protein LOC10 0.894 0.823 0.764 0.0
33329192660 S3 self-incompatibility locus-linked pol 0.966 0.830 0.692 0.0
33329194610 S1 self-incompatibility locus-linked pol 0.961 0.893 0.691 0.0
33329196610 S2 self-incompatibility locus-linked pol 0.961 0.893 0.682 0.0
>gi|255577332|ref|XP_002529547.1| Membralin, putative [Ricinus communis] gi|223530995|gb|EEF32850.1| Membralin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/568 (79%), Positives = 489/568 (86%), Gaps = 2/568 (0%)

Query: 1   MDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVN 60
           +D D L   A   W NWI S+ RKGKLALKFW+TD E +EH  E S +S+S KP    V 
Sbjct: 106 VDGDLLEILAPKFWWNWIGSSARKGKLALKFWKTDSEYIEHQPESSANSESSKPIADDVV 165

Query: 61  KIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLN 120
           K DK E R+SF  SAKE FK+AIIHFGKKW+RRLSF+WR  MQI+R+FQKLWNI G+HLN
Sbjct: 166 KTDKVETRSSFPASAKETFKAAIIHFGKKWHRRLSFIWRHLMQIIRSFQKLWNITGLHLN 225

Query: 121 LDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNI 180
           LDVPK M +LYLD + SYAVQWLEN++KAFEPTYLYTMEKG+FLLPE  KSRHNI T NI
Sbjct: 226 LDVPKWMRILYLDSLSSYAVQWLENKSKAFEPTYLYTMEKGFFLLPEEAKSRHNIITVNI 285

Query: 181 SISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPE 240
           SISA+HPCFGNRWQQLLINR VGYDTILMNSLL  PGQGYLYN QTKEFYNLSY QEPPE
Sbjct: 286 SISARHPCFGNRWQQLLINRIVGYDTILMNSLLSAPGQGYLYNFQTKEFYNLSYPQEPPE 345

Query: 241 GPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQ 300
           GPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQ RMLKFTVQLQHHA+HRLPTFQ
Sbjct: 346 GPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHRLPTFQ 405

Query: 301 LIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFF 360
           LIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAF+VLILVWLCELFTLISVRTPISMKFF
Sbjct: 406 LIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFF 465

Query: 361 PRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQ 420
           PRFFLLYFLVFHIYFFSYAYGFSY+AL T AAF+QHLILYFWN FEVPALQRF+QNRR+Q
Sbjct: 466 PRFFLLYFLVFHIYFFSYAYGFSYLALSTTAAFMQHLILYFWNRFEVPALQRFMQNRRSQ 525

Query: 421 LQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPPTNRVDAPG 480
           LQQ PDFHITSSTILAST+HITRLNTRN    NTDA SG   RPGS+QAM P N ++ PG
Sbjct: 526 LQQHPDFHITSSTILASTVHITRLNTRNEGPVNTDAASGLAFRPGSDQAM-PANGIEPPG 584

Query: 481 PERS-ENNNPDRVGNTMEIPGQPDLQQPETGPNPGSMNSFSSLLLWILGGASSEGLNSFL 539
           P++   N+N  RV N M+IPG+ DL+Q ETGP+PGSMNSFSSLLLWILGGASSEGLNSF 
Sbjct: 585 PQQQLGNDNLGRVSNPMQIPGEADLRQTETGPSPGSMNSFSSLLLWILGGASSEGLNSFF 644

Query: 540 SMFRDVREQGQVFADSQRQENGGNQHVQ 567
           SMFRDVR+QGQ F +S R EN  +Q +Q
Sbjct: 645 SMFRDVRDQGQGFDESPRPENAADQDMQ 672




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858172|emb|CAN83928.1| hypothetical protein VITISV_036910 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558483|ref|XP_003547536.1| PREDICTED: uncharacterized protein LOC100812436 [Glycine max] Back     alignment and taxonomy information
>gi|224054256|ref|XP_002298169.1| predicted protein [Populus trichocarpa] gi|222845427|gb|EEE82974.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357445483|ref|XP_003593019.1| Membralin [Medicago truncatula] gi|355482067|gb|AES63270.1| Membralin [Medicago truncatula] Back     alignment and taxonomy information
>gi|449457053|ref|XP_004146263.1| PREDICTED: uncharacterized protein LOC101205453 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356525964|ref|XP_003531591.1| PREDICTED: uncharacterized protein LOC100810658 [Glycine max] Back     alignment and taxonomy information
>gi|33329192|gb|AAQ09996.1| S3 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata] Back     alignment and taxonomy information
>gi|33329194|gb|AAQ09997.1| S1 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata] Back     alignment and taxonomy information
>gi|33329196|gb|AAQ09998.1| S2 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query567
TAIR|locus:4010713572623 AT1G60995 "AT1G60995" [Arabido 0.880 0.800 0.661 9.6e-176
MGI|MGI:2177957574 Tmem259 "transmembrane protein 0.287 0.283 0.274 1.7e-17
UNIPROTKB|Q4ZIN3620 TMEM259 "Membralin" [Homo sapi 0.285 0.261 0.25 8.2e-16
ZFIN|ZDB-GENE-080225-14694 tmem259 "transmembrane protein 0.396 0.324 0.257 2.5e-15
WB|WBGene00021985593 Y59C2A.2 [Caenorhabditis elega 0.194 0.185 0.25 2.4e-13
FB|FBgn0034071 960 CG8405 [Drosophila melanogaste 0.451 0.266 0.223 6.4e-10
TAIR|locus:4010713572 AT1G60995 "AT1G60995" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1707 (606.0 bits), Expect = 9.6e-176, P = 9.6e-176
 Identities = 344/520 (66%), Positives = 396/520 (76%)

Query:    48 SSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRN 107
             SS S + TD    KIDKEE R+SF++SAKE  ++AI+ F KK YRR+SFV +   +ILR 
Sbjct:   109 SSTSEENTDDTFVKIDKEEPRSSFSVSAKENVRAAILRFLKKCYRRISFVLQHTARILRG 168

Query:   108 FQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPE 167
              +K+WNI GI LNLDVPKL+H+LY+D+++ YAVQWLE++T+ FEPTYLYTMEKGYFLLP+
Sbjct:   169 VRKIWNIIGIPLNLDVPKLLHVLYMDKVNYYAVQWLESKTQEFEPTYLYTMEKGYFLLPD 228

Query:   168 ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTK 227
               KSRHNIRT N+SISA+HPCFGNRWQQLLINR VGYDTI+MNSL ++ GQGYLYN QT+
Sbjct:   229 EAKSRHNIRTANVSISARHPCFGNRWQQLLINRVVGYDTIIMNSLQNSAGQGYLYNYQTR 288

Query:   228 EFYNLSYAQEPPEGPAKFGDYLVTKCGVXXXXXXXXXXXXXXXXXXXRETQARMLKFTVQ 287
             EFYNLSY+QE P+G A FGDYLVTKCGV                   RETQ RMLKFTVQ
Sbjct:   289 EFYNLSYSQELPDGSAHFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQ 348

Query:   288 LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQXXXXXXXXXXXXCELFT 347
             LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQ            CELFT
Sbjct:   349 LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLVLVWLCELFT 408

Query:   348 LISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEV 407
             LISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSY+AL T AAF+QHLILYFWN FEV
Sbjct:   409 LISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYLALMTTAAFMQHLILYFWNRFEV 468

Query:   408 PALQRFIQNRRTQLQQQPDFHITSSTILASTLHITRLN--TRNPSLPNTDATSGPGLRPG 465
             PALQRF+Q+R++ LQQ PDFHITSSTILASTLHITRLN  TRN + P     SGP     
Sbjct:   469 PALQRFLQSRQSHLQQHPDFHITSSTILASTLHITRLNRTTRNRT-P-----SGPNHTTP 522

Query:   466 SNQAMPPTNRVDAPG---PERSENNNPDRVGNTMEIPGQPDLQQPETGPNPGSMNSFSSL 522
             +      +   D  G   P + +    +   NT  +P +P+ QQ       G+M+SFSS+
Sbjct:   523 NQNTETRSFTADGGGVGNPAQYQEQQEENEANT--VPAEPNPQQA------GAMSSFSSM 574

Query:   523 LLWILGGASSEGLNSFLSMFRDVREQ--GQVFADSQRQEN 560
             LLWILGGASSEGLNSFLSMFRDVR++   QVFAD+   +N
Sbjct:   575 LLWILGGASSEGLNSFLSMFRDVRDEDEAQVFADTSPPQN 614




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005783 "endoplasmic reticulum" evidence=IDA
MGI|MGI:2177957 Tmem259 "transmembrane protein 259" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q4ZIN3 TMEM259 "Membralin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080225-14 tmem259 "transmembrane protein 259" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00021985 Y59C2A.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0034071 CG8405 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_Genewise1_v1.C_LG_I9811
hypothetical protein (661 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query567
pfam09746375 pfam09746, Membralin, Tumour-associated protein 3e-11
>gnl|CDD|118278 pfam09746, Membralin, Tumour-associated protein Back     alignment and domain information
 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 30/210 (14%)

Query: 156 YTMEKGYFLLPEADKSRHNIRTFNISISAQHP-CFGNRWQQLLINRFVGYDTILMNSLLH 214
           Y++E G+  L  + + R NI    + +      CFG+ + + L+  F+GYD ILM S+  
Sbjct: 185 YSLEYGFLRLSSSTRQRLNIPVLTVQLDPNTDKCFGDSFSRFLLKEFLGYDDILMASVKT 244

Query: 215 TPGQ----GYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSV 270
              Q    GYL N  T E Y                 Y    C   +M LF     T SV
Sbjct: 245 LAEQEENKGYLRNVITGEHYRFVSMW-----WMARSSYPAAFC---IMLLF-----TFSV 291

Query: 271 SFTLRETQARMLKFTVQ----LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEF 326
           S  LR +  ++  F V     L+++   R P   L+   VI +LV      G+   + EF
Sbjct: 292 SMLLRYSHHQIFVFIVDLLQMLEYNVSARFPAAPLL--TVILALV------GMEAIMSEF 343

Query: 327 YDDQLLAFLVLILVWLCELFTLISVRTPIS 356
           ++D   AF ++++VW+ + +  I   T I+
Sbjct: 344 FNDTTTAFYIILIVWIADQYDAICCHTSIT 373


Membralin is evolutionarily highly conserved; though it seems to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato. Length = 375

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 567
PF09746375 Membralin: Tumour-associated protein; InterPro: IP 100.0
KOG2092381 consensus Uncharacterized conserved protein [Funct 100.0
KOG2092381 consensus Uncharacterized conserved protein [Funct 99.97
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family Back     alignment and domain information
Probab=100.00  E-value=6.4e-68  Score=545.40  Aligned_cols=193  Identities=34%  Similarity=0.638  Sum_probs=174.2

Q ss_pred             CCCCceEEeccceeeccCcccccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEe
Q 008386          149 AFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYN  223 (567)
Q Consensus       149 ~fEp~YeYSlEyGfLrLSe~aR~rhNIpt~~VtLd~-~~~CFGd~~srlLLd~FLGYDdILmNSLk----~~~gkGYLrN  223 (567)
                      ..||.+|||+||||||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+|    +++|||||||
T Consensus       178 ~~~y~veYsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n  257 (375)
T PF09746_consen  178 QDEYIVEYSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRN  257 (375)
T ss_pred             ccceeEEeehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeee
Confidence            446778999999999999999999999999999996 99999999999999999999999999999    4789999999


Q ss_pred             cccCeEEeeccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccccchhHHH
Q 008386          224 CQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIF  303 (567)
Q Consensus       224 v~TgE~YrLv~~~~~p~~~ar~~sYlv~k~~VlimsLFvFF~fT~sVSfLLReSq~rIf~FiVdL~~~~r~~~P~apLi~  303 (567)
                      ++|||||||+++|+    ++| ++|        ++++++|++||++|||||||||||||+|||||+||++++.|++    
T Consensus       258 ~~t~e~y~fv~~~~----~~r-~sy--------~~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~----  320 (375)
T PF09746_consen  258 VVTGEHYRFVSMWW----MAR-SSY--------LAAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF----  320 (375)
T ss_pred             cccccceehhhhhh----hhc-cHH--------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc----
Confidence            99999999997752    233 244        4578889999999999999999999999999999998887632    


Q ss_pred             HHHHHHhhhhhhHhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeccccccc
Q 008386          304 VHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK  358 (567)
Q Consensus       304 ~hVI~sLVFVpvmIGM~afMsEFFnD~tlAFyVILIVWladqFdaIc~RT~iSkr  358 (567)
                      .|++..|.+||+||||||||+|||||++|||||||+||+|||||+|||||++|||
T Consensus       321 ~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r  375 (375)
T PF09746_consen  321 FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR  375 (375)
T ss_pred             cccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence            3556666777888899999999999999999999999999999999999999997



The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].

>KOG2092 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2092 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query567
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 62/448 (13%), Positives = 129/448 (28%), Gaps = 141/448 (31%)

Query: 48  SSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIH----FGKKWYRRLSFVWRQAMQ 103
            +Q F   +  V+++          L  + A K+ +I      GK W   +      A+ 
Sbjct: 122 DNQVFAKYN--VSRLQPYLKLRQALLELRPA-KNVLIDGVLGSGKTW---V------ALD 169

Query: 104 ILRN--------FQKLW-NIAGIHLNLDVPKLMHLLYLDRIHSYA------------VQW 142
           +  +        F+  W N+   +    V +++  L      ++             +  
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 143 LENRTKAFEPTYLYTMEKGYF--LLPEAD-KSRHNIRTFNISISAQHPCFGNRWQQLLIN 199
           ++   +           K Y   LL   + ++      FN+S      C     + LL  
Sbjct: 230 IQAELRRL------LKSKPYENCLLVLLNVQNAKAWNAFNLS------C-----KILLTT 272

Query: 200 RFVGYDTILMN------SLLHTPGQGYLYNCQTKE----FYNLSYAQEPPEGPAKFGDYL 249
           RF      L        SL H      L   + K     + +      P E         
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPRE--------- 321

Query: 250 VTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIES 309
           V       +S+             +R+  A         +H    +L T     ++V+E 
Sbjct: 322 VLTTNPRRLSIIAES---------IRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 310 L----------VF---VPIMIGILFFL---FEFYDDQ-LLAFLV---LILVWLCE-LFTL 348
                      VF     I   +L  +       D   ++  L    L+     E   ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 349 ----ISVRTPISMKF-----------FPR-FFLLYFLVFHI--YFFSY-AYGFSYMALGT 389
               + ++  +  ++            P+ F     +  ++  YF+S+  +    +    
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 390 AAAFVQHLILYFWNHFEVPALQRFIQNR 417
                + + L F          RF++ +
Sbjct: 489 RMTLFRMVFLDF----------RFLEQK 506


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00