Citrus Sinensis ID: 008393
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 567 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.984 | 0.599 | 0.76 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.520 | 0.193 | 0.326 | 1e-31 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.470 | 0.196 | 0.314 | 4e-29 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.509 | 0.229 | 0.298 | 6e-28 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.504 | 0.169 | 0.275 | 5e-24 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.527 | 0.539 | 0.276 | 6e-24 | |
| D3TLL6 | 411 | Lissencephaly-1 homolog O | N/A | no | 0.488 | 0.673 | 0.255 | 2e-22 | |
| Q8N136 | 415 | Outer row dynein assembly | yes | no | 0.409 | 0.559 | 0.300 | 5e-22 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.435 | 0.375 | 0.296 | 5e-22 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | no | no | 0.435 | 0.377 | 0.296 | 8e-22 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/575 (76%), Positives = 488/575 (84%), Gaps = 17/575 (2%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVGS L
Sbjct: 366 MLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVGSSL 425
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQH-------TLSNQQSQSS 112
GG LLPRGDTDML+KLKMA + QQQQ QQQ PQ L+N Q QSS
Sbjct: 426 QPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQPQSS 485
Query: 113 NHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTA 172
NH++HQQ+K+G GS+T+DGS+SNSFRGN+QV KNQ+GRKRKQPVSSSGPANSSGTANTA
Sbjct: 486 NHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTANTA 545
Query: 173 GPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLE 232
GPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL
Sbjct: 546 GPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL------- 598
Query: 233 LRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC 292
ADMDR VEDGSLDDNVESFLS +D D RDA R MDVS+GF+F E NSVRAST+KV C
Sbjct: 599 --ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTC 656
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
CHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS RLATSSFDKT
Sbjct: 657 CHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKT 716
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412
VRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTRV+K
Sbjct: 717 VRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK 776
Query: 413 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 472
GG+ Q+RFQP +G+YLAA++ N+V++LD ETQA R SLQGH PI+SVCWDPSG+ LASV
Sbjct: 777 GGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASV 836
Query: 473 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 532
SED V+VWT+G+GSEGECVHELSCNGNKF SCVFHP YPSLLVIGCYQSLELWNMSENKT
Sbjct: 837 SEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKT 896
Query: 533 MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
MTL AHEGLI +LAVST TG VASASHDK VKLWK
Sbjct: 897 MTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 17/312 (5%)
Query: 263 DAGG--RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 320
D+GG R + + G KE + + S V FS DGK+LA+G D+ LW + +
Sbjct: 883 DSGGIVRFWEAATG---KELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQ 939
Query: 321 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380
+ H+S + V FSP+ LA+ S D+TVR+WD + G L F GH+ V S+ F
Sbjct: 940 CLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDI-SSGECLYIFQGHTGWVYSVAF 998
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAEN-VV 436
+ + ++ + GD +R W I++ C +F+G T+ +R F G LA+ +++ V
Sbjct: 999 NLD-GSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSD-GAMLASGSDDQTV 1056
Query: 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECVHELS 495
+ D + C +LQGHT + SV + P G +LAS +D VR+W + SG+ C++ L
Sbjct: 1057 RLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGN---CLYTLQ 1113
Query: 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 554
+ VF P +L Q + LW++S K + TL H + A+A S + +
Sbjct: 1114 GYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATL 1173
Query: 555 ASASHDKFVKLW 566
AS S D+ V+LW
Sbjct: 1174 ASGSGDQTVRLW 1185
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
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Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 10/277 (3%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
FS DG+ +A+G D +W + LE H S + V FSP R+A+ S DKT++
Sbjct: 933 FSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIK 992
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 413
+WD + G +T GH SV S+ F P+ + D D I+ W +G+CT+ +G
Sbjct: 993 IWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQTLEGH 1050
Query: 414 -GTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 471
G Q + F P R + + ++ + I DA + C +L+GH + SV + P G+ +AS
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVAS 1110
Query: 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530
S D ++++W SG+ C L +G HS F P + ++++W+ +
Sbjct: 1111 GSIDGTIKIWDAASGT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167
Query: 531 K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
T TL H G + ++A S + VAS S DK +K+W
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 13/302 (4%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVSQG K ++++ T V FS+DG+ LA+G D+ +W+ T + H+
Sbjct: 796 DVSQG---KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389
+ + + +SP L + S D+T+++WD ++T GH+ V S+ F P+ L C
Sbjct: 853 NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH-ICIKTLHGHTNEVCSVAFSPDGQTLAC 911
Query: 390 SCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQAC 446
D +R W+ G C + + G T + F P + + + V + D +T
Sbjct: 912 -VSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970
Query: 447 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505
SL+GHT I + + P + LAS S D SVR+W + S G+C L + + ++ V
Sbjct: 971 ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI---STGQCFQILLEHTDWVYAVV 1027
Query: 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 564
FHP + +++LWN+S + + TL+ H I +A S + +ASAS D+ V+
Sbjct: 1028 FHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 565 LW 566
LW
Sbjct: 1088 LW 1089
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
F +E N + VI S DG+ +A+G DK LW D +T L H +
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT-LNGHEDAVYS 1118
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394
V FSP +A+ DKT+++W + G L+T GH +V ++ F P+ +L S D
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSD-GTLLKTITGHEQTVNNVYFSPDGKNL-ASASSD 1176
Query: 395 GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSL 450
I+ W +G G G +RF P G+ +AA +E+ V + + +L
Sbjct: 1177 HSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD-GQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509
GH ++S+ + P G+ LAS S D ++++W + ++G+ V L + + F
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI---ADGKLVKTLKGHNDSVWDVNFSSD 1292
Query: 510 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
++ +++LWN + T T H G + A+ ++ +ASAS D ++LW+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQ 1350
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 145/318 (45%), Gaps = 19/318 (5%)
Query: 262 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 315
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 316 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 374
+ + L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341
Query: 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAA 431
+ + FHP+ + + D R W IN G+ + +G + + FQ +
Sbjct: 342 LARVAFHPSG-KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400
Query: 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 490
+++ + D T L QGH KP+ SV + P+G LAS ED+ R+W + +
Sbjct: 401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL---RMRKS 457
Query: 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAALAVS 548
++ + + N + P L Y + +W+ + + +L HE +A+L ++
Sbjct: 458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
Query: 549 TETGYVASASHDKFVKLW 566
++ +A+ SHD+ +KLW
Sbjct: 518 ADSSCIATVSHDRTIKLW 535
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Arabidopsis thaliana (taxid: 3702) |
| >sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 32/309 (10%)
Query: 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 343
RAS ++VI F L+ + D +W +T + + +L+ H+S + D+ F
Sbjct: 108 RASITRVI---FHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKL 164
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403
LA+ S D ++++WD ++T +GH +V S+ F P D + S D I+ W +
Sbjct: 165 LASCSADLSIKLWDFQQSYDCVKTMLGHDHNVSSVAFVP-AGDYVLSASRDQTIKMWEVA 223
Query: 404 NGSCTRVFKGGTAQMRF-QPHL-GRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSV 460
G C + + G +R + H+ G A+ + ++ + I ++ C+ L+ H ++ +
Sbjct: 224 TGYCVKTYSGHREWIRMVRVHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECI 283
Query: 461 CWDP--------------------SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499
W P G LAS S D ++RVW VG G C+ L+ + N
Sbjct: 284 AWAPDISTTHINEAAGSDNKKGHHQGPFLASGSRDKTIRVWDVGVGL---CLFVLTGHDN 340
Query: 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 558
FHP L+ +++ +W++ + M TL AH+ ++ + YV S S
Sbjct: 341 WVRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400
Query: 559 HDKFVKLWK 567
D VK+W+
Sbjct: 401 VDNTVKVWE 409
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Glossina morsitans morsitans (taxid: 37546) |
| >sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens GN=WDR69 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 11/243 (4%)
Query: 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337
K ++ R T++++C F+ L+ATG D A LW + L HS+ I + F
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSF 227
Query: 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
+ S R+ T SFD TV VWDAD G + +GH A + S F+ + LI + D
Sbjct: 228 NTSGDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASFNWDC-SLILTGSMDKTC 285
Query: 398 RYWSINNGSCTRVFKGGTAQM--RFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGHT 454
+ W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 286 KLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHE 345
Query: 455 KPIDSVCWDPSG-ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+ Y
Sbjct: 346 GEISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGN 400
Query: 514 LVI 516
+VI
Sbjct: 401 IVI 403
|
May play a role in axonemal outer row dynein assembly. Homo sapiens (taxid: 9606) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 413
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 414 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 472
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 532 TM-TLTAHEGLIAALAVSTE 550
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 413
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHPY-GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 414 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 472
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 532 TM-TLTAHEGLIAALAVSTE 550
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 567 | ||||||
| 356552535 | 902 | PREDICTED: transcriptional corepressor L | 0.992 | 0.624 | 0.838 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 1.0 | 0.635 | 0.838 | 0.0 | |
| 356507762 | 912 | PREDICTED: transcriptional corepressor L | 0.998 | 0.620 | 0.838 | 0.0 | |
| 356563836 | 912 | PREDICTED: transcriptional corepressor L | 0.994 | 0.618 | 0.828 | 0.0 | |
| 356552537 | 893 | PREDICTED: transcriptional corepressor L | 0.977 | 0.620 | 0.824 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.982 | 0.616 | 0.824 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.992 | 0.598 | 0.757 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.978 | 0.614 | 0.814 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.968 | 0.603 | 0.844 | 0.0 | |
| 296081982 | 734 | unnamed protein product [Vitis vinifera] | 0.971 | 0.750 | 0.850 | 0.0 |
| >gi|356552535|ref|XP_003544622.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/569 (83%), Positives = 514/569 (90%), Gaps = 6/569 (1%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSPL
Sbjct: 338 MLTPQHQQQLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPL 397
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
AGG PR DTDML+KLK+AQ+ QQQ QQQQ QHTLSNQQSQ+SNH++HQQ
Sbjct: 398 QAGGPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQ---QHTLSNQQSQTSNHSMHQQ 454
Query: 120 DKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSS 178
DKMG G SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSS
Sbjct: 455 DKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSS 513
Query: 179 APSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMD 238
APSTPSTHTPGDV+SMPALPHSG++SKPLMMF DG+GTLTSPSNQLWDDKDLEL+AD+D
Sbjct: 514 APSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLWDDKDLELQADVD 573
Query: 239 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 298
R VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E NSVRAST+KV+CCHFSSD
Sbjct: 574 RFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSD 633
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358
GKLLA+GGHDKKAVLW TD+LK K LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD
Sbjct: 634 GKLLASGGHDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDV 693
Query: 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 418
+NPGYSLRTF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV KGGTAQM
Sbjct: 694 ENPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQM 753
Query: 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 478
RFQP LGRYLAAAAENVVSILD ETQACR SL+GHTK I SVCWDPSGE LASVSEDSVR
Sbjct: 754 RFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVR 813
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 538
VWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AH
Sbjct: 814 VWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAH 873
Query: 539 EGLIAALAVSTETGYVASASHDKFVKLWK 567
EGLIAALAVST G VASASHDKFVKLWK
Sbjct: 874 EGLIAALAVSTVNGLVASASHDKFVKLWK 902
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/570 (83%), Positives = 510/570 (89%), Gaps = 3/570 (0%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KDGLSN VGDVVSNVGSPL
Sbjct: 323 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPL 382
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
GG PRGDTDML+KLK+AQ+ QQQQQQ Q QQHTLSNQQSQ+SNH++HQQ
Sbjct: 383 QGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQ 442
Query: 120 DKMGPAG--SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPS 177
DK+G G SVT+DGSMSNSFRGNDQVSKNQ GRKRKQP SSSGPANSSGTANT GPSPS
Sbjct: 443 DKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPS 502
Query: 178 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 237
SAPSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+
Sbjct: 503 SAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADV 562
Query: 238 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 297
DR VEDGSLD+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSS
Sbjct: 563 DRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSS 622
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
DGKLLA+GGHDKK VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD
Sbjct: 623 DGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 682
Query: 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417
DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT Q
Sbjct: 683 VDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQ 742
Query: 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 477
MRFQP LGRYLAAAAEN+VSI D ETQ CR SL+GHTKP+ VCWDPSGELLASVSEDSV
Sbjct: 743 MRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSV 802
Query: 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 537
RVWT+GSGS+GECVHELSCNGNKFH VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+A
Sbjct: 803 RVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSA 862
Query: 538 HEGLIAALAVSTETGYVASASHDKFVKLWK 567
H+GLI +LAVST G VASASHDKF+KLWK
Sbjct: 863 HDGLITSLAVSTVNGLVASASHDKFLKLWK 892
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/569 (83%), Positives = 510/569 (89%), Gaps = 3/569 (0%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL
Sbjct: 345 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPL 404
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
GG PRGDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQ
Sbjct: 405 QGGGPPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQ 463
Query: 120 DKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSS 178
DK+G G SVT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSS
Sbjct: 464 DKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSS 523
Query: 179 APSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMD 238
APSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+D
Sbjct: 524 APSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVD 583
Query: 239 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 298
R VEDGSLD+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSD
Sbjct: 584 RFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSD 643
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358
GKLLA+GGHDK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD
Sbjct: 644 GKLLASGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDV 703
Query: 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 418
DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QM
Sbjct: 704 DNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQM 763
Query: 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 478
RFQP LGRYLAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVR
Sbjct: 764 RFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVR 823
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 538
VWT+GSGSEGECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH
Sbjct: 824 VWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAH 883
Query: 539 EGLIAALAVSTETGYVASASHDKFVKLWK 567
+GLI +LAVST G VASASHDKF+KLWK
Sbjct: 884 DGLITSLAVSTVNGLVASASHDKFLKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/570 (82%), Positives = 503/570 (88%), Gaps = 6/570 (1%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL
Sbjct: 346 MLTPQHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPL 405
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
AGG PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQ
Sbjct: 406 QAGGPAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQ 463
Query: 120 DKMGPAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPS 177
DKMG G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPS
Sbjct: 464 DKMGGGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPS 522
Query: 178 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 237
SAPSTPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQLWDDKDLEL+AD+
Sbjct: 523 SAPSTPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADV 582
Query: 238 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 297
DR VEDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSS
Sbjct: 583 DRFVEDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSS 642
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
DGKLLA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD
Sbjct: 643 DGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWD 702
Query: 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417
+NPGYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG Q
Sbjct: 703 VENPGYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQ 762
Query: 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 477
MRFQP LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSV
Sbjct: 763 MRFQPRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSV 822
Query: 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 537
RVWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+A
Sbjct: 823 RVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSA 882
Query: 538 HEGLIAALAVSTETGYVASASHDKFVKLWK 567
HEGLIAALAVST G VASASHDKFVKLWK
Sbjct: 883 HEGLIAALAVSTVNGLVASASHDKFVKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552537|ref|XP_003544623.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/569 (82%), Positives = 505/569 (88%), Gaps = 15/569 (2%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSPL
Sbjct: 338 MLTPQHQQQLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPL 397
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
AGG PR DTDML+KLK+AQ+ QQQ QQQQ QHTLSNQQSQ+SNH++HQQ
Sbjct: 398 QAGGPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQ---QHTLSNQQSQTSNHSMHQQ 454
Query: 120 DKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSS 178
DKMG G SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSS
Sbjct: 455 DKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSS 513
Query: 179 APSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMD 238
APSTPSTHTPGDV+SMPALPHSG++SKPLMMF DG+GTLTSPSNQL AD+D
Sbjct: 514 APSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQL---------ADVD 564
Query: 239 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 298
R VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E NSVRAST+KV+CCHFSSD
Sbjct: 565 RFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSD 624
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358
GKLLA+GGHDKKAVLW TD+LK K LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD
Sbjct: 625 GKLLASGGHDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDV 684
Query: 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 418
+NPGYSLRTF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV KGGTAQM
Sbjct: 685 ENPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQM 744
Query: 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 478
RFQP LGRYLAAAAENVVSILD ETQACR SL+GHTK I SVCWDPSGE LASVSEDSVR
Sbjct: 745 RFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVR 804
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 538
VWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AH
Sbjct: 805 VWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAH 864
Query: 539 EGLIAALAVSTETGYVASASHDKFVKLWK 567
EGLIAALAVST G VASASHDKFVKLWK
Sbjct: 865 EGLIAALAVSTVNGLVASASHDKFVKLWK 893
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/569 (82%), Positives = 501/569 (88%), Gaps = 12/569 (2%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL
Sbjct: 345 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPL 404
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
GG PRGDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQ
Sbjct: 405 QGGGPPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQ 463
Query: 120 DKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSS 178
DK+G G SVT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSS
Sbjct: 464 DKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSS 523
Query: 179 APSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMD 238
APSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL AD+D
Sbjct: 524 APSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVD 574
Query: 239 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 298
R VEDGSLD+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSD
Sbjct: 575 RFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSD 634
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358
GKLLA+GGHDK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD
Sbjct: 635 GKLLASGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDV 694
Query: 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 418
DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QM
Sbjct: 695 DNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQM 754
Query: 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 478
RFQP LGRYLAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVR
Sbjct: 755 RFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVR 814
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 538
VWT+GSGSEGECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH
Sbjct: 815 VWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAH 874
Query: 539 EGLIAALAVSTETGYVASASHDKFVKLWK 567
+GLI +LAVST G VASASHDKF+KLWK
Sbjct: 875 DGLITSLAVSTVNGLVASASHDKFLKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/618 (75%), Positives = 512/618 (82%), Gaps = 55/618 (8%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN GD++SNVGSPL
Sbjct: 328 MLTPQHQQQLMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPL 387
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ-----HTLSNQQSQSSNH 114
GG PRGDTDML+KLK+AQ+ QQQQQQQ QQQ + N QQ H LSNQQSQ+SNH
Sbjct: 388 HGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNH 447
Query: 115 NLHQQDKMGPAG-SVTLDGSMSNSFRGNDQ------------------------------ 143
++HQQDK+G G SVT+DGSMSNS+RGNDQ
Sbjct: 448 SMHQQDKVGGGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEI 507
Query: 144 --------------VSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPG 189
VSKNQ GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPG
Sbjct: 508 LNDGWLHSPIFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPG 567
Query: 190 DVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDN 249
D +SMPALPH+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDN
Sbjct: 568 DAVSMPALPHNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDN 627
Query: 250 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK 309
VESFLS DDTDPRD GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDK
Sbjct: 628 VESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDK 687
Query: 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369
KAV+W+ D+LK K LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF
Sbjct: 688 KAVIWYADSLKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFT 747
Query: 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 429
GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYLA
Sbjct: 748 GHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLA 807
Query: 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489
AAAEN+VSILD ETQACR SL+GHTK IDSVCWDPSGELLASVSEDSVR+WT+ EGE
Sbjct: 808 AAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTL----EGE 863
Query: 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST 549
CVHELSCNG+KFHSCVFHPT+PSLLVIGCYQSLELWNM+ENKTMTL+AH+GLI ALAVST
Sbjct: 864 CVHELSCNGSKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVST 923
Query: 550 ETGYVASASHDKFVKLWK 567
G VASASHDKF+KLWK
Sbjct: 924 VNGLVASASHDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/570 (81%), Positives = 494/570 (86%), Gaps = 15/570 (2%)
Query: 1 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 59
MLTPQHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL
Sbjct: 346 MLTPQHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPL 405
Query: 60 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 119
AGG PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQ
Sbjct: 406 QAGGPAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQ 463
Query: 120 DKMGPAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPS 177
DKMG G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPS
Sbjct: 464 DKMGGGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPS 522
Query: 178 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 237
SAPSTPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQL AD+
Sbjct: 523 SAPSTPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQL---------ADV 573
Query: 238 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 297
DR VEDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSS
Sbjct: 574 DRFVEDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSS 633
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
DGKLLA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD
Sbjct: 634 DGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWD 693
Query: 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417
+NPGYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG Q
Sbjct: 694 VENPGYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQ 753
Query: 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 477
MRFQP LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSV
Sbjct: 754 MRFQPRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSV 813
Query: 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 537
RVWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+A
Sbjct: 814 RVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSA 873
Query: 538 HEGLIAALAVSTETGYVASASHDKFVKLWK 567
HEGLIAALAVST G VASASHDKFVKLWK
Sbjct: 874 HEGLIAALAVSTVNGLVASASHDKFVKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/559 (84%), Positives = 501/559 (89%), Gaps = 10/559 (1%)
Query: 17 TSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIK 76
TSP SDESRR RMLLNNR+M+LGKDG SNS+GDV NVGSPL G +LPRGDT+ML+K
Sbjct: 354 TSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSPLQPGCAVLPRGDTEMLMK 411
Query: 77 LKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSS--------NHNLHQQDKMGPAGSV 128
LKMAQMH QQQQQQQQQQ ++ PQQ Q + NHN+HQQDKMG AGS+
Sbjct: 412 LKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSI 471
Query: 129 TLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTP 188
T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTP
Sbjct: 472 TVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTP 531
Query: 189 GDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDD 248
GDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR VEDGSLDD
Sbjct: 532 GDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDD 591
Query: 249 NVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD 308
NVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGKLLA+GGHD
Sbjct: 592 NVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHD 651
Query: 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368
KKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+ YSLRTF
Sbjct: 652 KKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTF 711
Query: 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 428
GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFKGGTAQMRFQP GRYL
Sbjct: 712 TGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRFQPRHGRYL 771
Query: 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 488
AAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LASVSEDSVRVWT+GSG+EG
Sbjct: 772 AAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEG 831
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548
ECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSENKTMTL+AH+GLIAALAVS
Sbjct: 832 ECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVS 891
Query: 549 TETGYVASASHDKFVKLWK 567
T +G VASASHDK VKLWK
Sbjct: 892 TVSGLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081982|emb|CBI20987.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/561 (85%), Positives = 505/561 (90%), Gaps = 10/561 (1%)
Query: 15 NLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDML 74
+LTSP SDESRR RMLLNNR+M+LGKDG SNS+GD V NVGSPL G +LPRGDT+ML
Sbjct: 176 SLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGD-VPNVGSPLQPGCAVLPRGDTEML 233
Query: 75 IKLKMAQMHQ--------QQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG 126
+KLKMAQMH QQ Q QQQQ QQH LS+QQSQSSNHN+HQQDKMG AG
Sbjct: 234 MKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAG 293
Query: 127 SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTH 186
S+T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTH
Sbjct: 294 SITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTH 353
Query: 187 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSL 246
TPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR VEDGSL
Sbjct: 354 TPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSL 413
Query: 247 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG 306
DDNVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGKLLA+GG
Sbjct: 414 DDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGG 473
Query: 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366
HDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+ YSLR
Sbjct: 474 HDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLR 533
Query: 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 426
TF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFKGGTAQMRFQP GR
Sbjct: 534 TFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRFQPRHGR 593
Query: 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 486
YLAAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LASVSEDSVRVWT+GSG+
Sbjct: 594 YLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGN 653
Query: 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA 546
EGECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSENKTMTL+AH+GLIAALA
Sbjct: 654 EGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALA 713
Query: 547 VSTETGYVASASHDKFVKLWK 567
VST +G VASASHDK VKLWK
Sbjct: 714 VSTVSGLVASASHDKIVKLWK 734
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 567 | ||||||
| DICTYBASE|DDB_G0282189 | 579 | tupA "transcriptional represso | 0.638 | 0.625 | 0.293 | 3.4e-27 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.469 | 0.195 | 0.294 | 3.3e-26 | |
| TAIR|locus:2060560 | 554 | LIS "AT2G41500" [Arabidopsis t | 0.527 | 0.539 | 0.276 | 2.6e-25 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.446 | 0.582 | 0.311 | 1e-24 | |
| UNIPROTKB|Q8N136 | 415 | WDR69 "Outer row dynein assemb | 0.402 | 0.549 | 0.307 | 2.2e-24 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.485 | 0.823 | 0.262 | 3.9e-24 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.470 | 0.797 | 0.265 | 8.4e-24 | |
| UNIPROTKB|Q0P593 | 415 | WDR69 "Outer row dynein assemb | 0.389 | 0.532 | 0.306 | 2.1e-23 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.423 | 0.779 | 0.275 | 5e-23 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.423 | 0.718 | 0.275 | 5e-23 |
| DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 117/399 (29%), Positives = 183/399 (45%)
Query: 193 SMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES 252
S P+L + P M G + +G S +N ++ +L + DM+ + E+ + E
Sbjct: 191 SFPSLSPLDSNRHPKEM-GNNMSGNSMSMNN---NNNNLNKKPDMEEVKEEDRRRHDTEM 246
Query: 253 FLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICC-HFSSDGKLLATGGHDKK 310
+ D G V + ++++ ++ V+CC +FS+DGK LATG + +
Sbjct: 247 SEENGKEKGTDWLVGYNPSVQTNLNIDLLHNLQHNS--VVCCVNFSNDGKYLATGCN-RS 303
Query: 311 AVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365
A ++ DT K + S I V FSP LAT + DKTV+VWD
Sbjct: 304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQ- 362
Query: 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQM 418
TF GH + SLD+ + I S GD + + W I G C K G +
Sbjct: 363 HTFYGHELDIYSLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSV 421
Query: 419 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 476
P GR +AA + +N+V + DA+T +GH + SV + P G+ LAS S D S
Sbjct: 422 AMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKS 480
Query: 477 VRVWTV-GSGSEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCY-QSLELWNMSENKT 532
+++W + GS S C + NG+K S F P S L+ G +S++ W+ T
Sbjct: 481 LKLWDLSGSRSRSRC--RATFNGHKDFVLSVAFSPD-GSWLISGSKDRSVQFWDPRNGTT 537
Query: 533 -MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 567
M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 538 HMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 3.3e-26, P = 3.3e-26
Identities = 82/278 (29%), Positives = 138/278 (49%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
FS DGK L +G +D +W T + L+ HS + + FSP LA+ S+D T+
Sbjct: 758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
+WD+ G L+TF GH S+ S+ F P+ +L + D D I+ W + G +
Sbjct: 818 LWDSAT-GELLQTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875
Query: 415 TAQMR---FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
+ +R F P G+ LA+++ ++ + + + T + SL+G + + SV + P G+ LA
Sbjct: 876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934
Query: 471 SVSE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529
S SE ++V++W +G E + L + S F P L +++LWN +
Sbjct: 935 SGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTT 991
Query: 530 NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+ T H+ I A+A S + ++ S S D +KLW
Sbjct: 992 GELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
| TAIR|locus:2060560 LIS "AT2G41500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 88/318 (27%), Positives = 144/318 (45%)
Query: 262 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 315
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 316 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 374
+ + L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341
Query: 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAA 431
+ + FHP+ + + D R W IN G+ + +G + + FQ +
Sbjct: 342 LARVAFHPS-GKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400
Query: 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 490
+++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS--- 457
Query: 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSE-NKTMTLTAHEGLIAALAVS 548
++ + + N + P L Y + +W+ + + +L HE +A+L ++
Sbjct: 458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
Query: 549 TETGYVASASHDKFVKLW 566
++ +A+ SHD+ +KLW
Sbjct: 518 ADSSCIATVSHDRTIKLW 535
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 87/279 (31%), Positives = 137/279 (49%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
FS DG+LLA+G +D LW + K LE HSS + V FSP+ LA+ S D T++
Sbjct: 49 FSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFSPNGQLLASGSSDTTIK 108
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
+W++ + T GHS V S+ F PN G++ W+ GS +G
Sbjct: 109 LWNSASDSLK-HTMEGHSDRVESVAFSPN-----------GQL--WNPAIGSLKHTIEGH 154
Query: 415 T---AQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
+ + F P G+ LA+ +AE + + D+ T + +L GH+ + + + P G LLA
Sbjct: 155 SDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLA 213
Query: 471 SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMS 528
S S D+ +++W SGS H L + NK S F P LL G + ++LW+ +
Sbjct: 214 SGSNDATIKLWDPPSGS---LKHTLEGHSNKIESLAFSPN-GQLLASGSSDATIKLWDTA 269
Query: 529 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
TL H ++ ++ S ++ + S S D +KLW
Sbjct: 270 TGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 74/241 (30%), Positives = 114/241 (47%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340
++ R T++++C F+ L+ATG D A LW + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTS 230
Query: 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 399
R+ T SFD TV VWDAD G + +GH A + S F N D LI + D +
Sbjct: 231 GDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKL 287
Query: 400 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 456
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGE 347
Query: 457 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+ Y +V
Sbjct: 348 ISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGNIV 402
Query: 516 I 516
I
Sbjct: 403 I 403
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 3.9e-24, P = 3.9e-24
Identities = 77/293 (26%), Positives = 143/293 (48%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ +C+ N+ + C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 519 YQSLE-LWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 8.4e-24, P = 8.4e-24
Identities = 76/286 (26%), Positives = 139/286 (48%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
FS DGK LA+ DK +W K + LE H I+D+ +S + ++S DKT++
Sbjct: 54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
+WD ++ G ++T GH V + F+P + +LI S D +R W +N G CT++
Sbjct: 114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171
Query: 415 TAQMRFQPHLGR----YLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGE-L 468
+ + H R ++ + + V I D T Q K + V + P+G+ +
Sbjct: 172 SDPVT-GVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFV 230
Query: 469 LASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---TYPSLLVIGCYQSL-EL 524
LA ++++R+W+ + + C+ + + N+ + C+F T +V G +L +
Sbjct: 231 LAGTLDNTLRLWSYNNNKK--CLKTYTGHKNEKY-CIFSTFSVTCGKWIVTGSEDNLIYI 287
Query: 525 WNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+N+ + + TL HE ++ +A +AS + D+ VK+WK
Sbjct: 288 YNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340
++ R T++++C F+ L+ATG D A LW + + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTS 230
Query: 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 399
R+ T SFD TV VW+AD G + T +GH A + S F N D LI + D +
Sbjct: 231 GNRIITGSFDHTVTVWEADT-GRKVYTLIGHCAEISSAVF--NWDCSLILTGSMDKTCKL 287
Query: 400 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 456
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGE 347
Query: 457 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+
Sbjct: 348 ISKISFNPQGNRLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN 396
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 5.0e-23, P = 5.0e-23
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 186
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 552
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 553 YVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 247 WIVSGSEDNLVYIW 260
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 5.0e-23, P = 5.0e-23
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 212
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 552
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 553 YVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 273 WIVSGSEDNLVYIW 286
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.76 | 0.9841 | 0.5993 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_VI1732 | hypothetical protein (894 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 567 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-60 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-44 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-33 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 6e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| COG5624 | 505 | COG5624, TAF61, Transcription initiation factor TF | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.001 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 2e-60
Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 14/292 (4%)
Query: 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 342
++ T V C FS DGKLLATG D +W +T + L+ H+ + DV S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402
LA+ S DKT+R+WD + G +RT GH++ V S+ F P+ ++ S D I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122
Query: 403 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 459
G C +G T + F P +++ + + + D T C +L GHT ++S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 460 VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518
V + P GE L S S D ++++W + S G+C+ L + N +S F P L+
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLASG 237
Query: 519 Y--QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
++ +W++ + TL+ H + +LA S + +AS S D +++W
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 1e-44
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335
+ + ++ TS V FS DG++L++ DK +W +T K T L H+ + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395
FSP +A+SS D T+++WD G + T GH+ V S+ F P+ + L S DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199
Query: 396 EIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQ 451
I+ W ++ G C +G + F P G LA+ +E + + D T C +L
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 452 GHTKPIDSVCWDPSGELLASVSED-SVRVW 480
GHT + S+ W P G+ LAS S D ++R+W
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 4e-33
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)
Query: 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 339
+R + FS DG+LL +G D LW D K+ H S ++ + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 340 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
+ SS D TV++WD PG +RT GHS SV SL F P+ L DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 398 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAET-QACRLSLQG 452
+ W + G G T + F P G +A+ + + + D T + R +L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 453 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511
H+ + S + P G LLAS S D ++R+W + S S + LS + + S F P
Sbjct: 241 HSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGK 297
Query: 512 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567
L ++ LW++ K ++TL HEG +++L+ S + + S S D ++LW
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---F 420
RT GH+ V + F P+ L+ + GDG I+ W + G R KG T +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 479
+ +++ + + D ET C +L GHT + SV + P G +L+S S D +++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 480 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTA 537
W V G+C+ L + + +S F P + + +++LW++ K + TLT
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 538 HEGLIAALAVSTETGYVASASHDKFVKLW 566
H G + ++A S + + S+S D +KLW
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (271), Expect = 2e-25
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 334
+ K S + S + FS DG LLA+G D LW + S L HSS +
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 393
V FSP LA+ S D TVR+WD + S T GH V SL F P+ L+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 394 DGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451
DG IR W + G + +G + + F P + + + V + D T + +L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 452 GHTKPIDSVCWDPSGELLASVSED-SVRVW 480
GHT + S+ + P G+ LAS S D ++R+W
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.9 bits (242), Expect = 1e-21
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 17/261 (6%)
Query: 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 379
S L H IT + FSP L + S D T+++WD DN +++ G S +S
Sbjct: 56 LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKL 115
Query: 380 FHPNKDD---LICSCDGDGEIRYWSINN-GSCTRVFKGGTA---QMRFQPHLGRYLAAAA 432
+ D L+ S DG ++ W ++ G R +G + + F P G+ LA+ +
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGS 174
Query: 433 E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEG 488
+ + D T +L GHT P+ S+ + P G L+AS S D ++R+W + +G
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-- 232
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALA 546
LS + + S F P L ++ LW++ + TL+ H + ++A
Sbjct: 233 LLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291
Query: 547 VSTETGYVASASHDKFVKLWK 567
S + +AS S D V+LW
Sbjct: 292 FSPDGKLLASGSSDGTVRLWD 312
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.8 bits (234), Expect = 1e-20
Identities = 78/287 (27%), Positives = 115/287 (40%), Gaps = 48/287 (16%)
Query: 286 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 343
T V FS DG L+A+G D LW T K + L HS + FSP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403
LA+ S D T+R+WD + LRT GHS+SV+S+ F P+ L S DG +R W +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314
Query: 404 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463
G L+L+GH P+ S+ +
Sbjct: 315 TGKLLSS-------------------------------------LTLKGHEGPVSSLSFS 337
Query: 464 PSGELLA-SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 521
P G LL S+D +R+W + G+ + L + S F P + +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL---RTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 522 LELWNMSENK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
+ LW++S L H + +L S + +AS S D ++LW
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335
+ K ++R + V FS DG LLA+G D +W T + L H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 336 RFSPSMPRLATSSFDKTVRVWD 357
+SP RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 286 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 336
++S ++C F DG+ AT G +KK ++ +++ L S L
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 395
S ++A+S+F+ V+VWD L T M H V S+D+ L+ S DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 396 EIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRL-SLQ 451
++ WSIN G T K ++F GR LA +A++ V D L ++
Sbjct: 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658
Query: 452 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 488
GH+K + V + S L++S +++++++W + G
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-07
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
K L+ H+ +T V FSP LA+ S D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 318 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
+ + L+ H+ +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (125), Expect = 3e-07
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 347
S V+ FS DG+++++G D LW T NL+ H+S +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 348 SFDKTVRVWDADNPGYSL 365
S D T+R+WD S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
+ +L+GHT P+ SV + P G+ LAS S+D ++++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
+L+GHT P+ SV + P G LLAS S+D +VRVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
G L+T GH+ V S+ F P+ + S DG I+ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 40/171 (23%), Positives = 55/171 (32%), Gaps = 26/171 (15%)
Query: 56 GSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHN 115
G G + +KL+ + QQ QQQQQQQ N NQQ
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQ------- 376
Query: 116 LHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS 175
+G G + G ++ + N + + +SS P T +
Sbjct: 377 ------VGQGGQMVALGYLNIQ-GNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQP 429
Query: 176 PSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLW 226
P PS PS PG S P SG + SPS Q+
Sbjct: 430 PQ--PSVPSPGGPG---SQPPQSVSGGMIPSPPAL-------MPSPSPQMS 468
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-05
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
G LRT GH+ V S+ F P+ +L+ S DG +R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 11/198 (5%)
Query: 81 QMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRG 140
++ + Q QQ Q+Q +PQQ L + ++ + G G L G RG
Sbjct: 229 RLVDRYPQFQQGQKQVLSPQQRFLHGMERYEASGMPPPAEWAGSNGLHVLPGRREEVPRG 288
Query: 141 NDQVSKNQTGRKRKQPVSSSGPANSSGTANTA--GPSPSSAPSTPSTHTPGDVISMPALP 198
R +P +G AN A P + P + P
Sbjct: 289 I--FRCPSPESSRGEPTHLD---YRNGMANNAQRSRFPGTCSIYPENPGKRWCSTKYPQP 343
Query: 199 HSGTTSKPLMMFG-TDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD 257
+ G G L +P D L R D+ RL L++ + +
Sbjct: 344 LVHKGDRDTETGGCAAPDGGLATPGR---DKGPLYERDDLWRLDSKRKLEELQHGGVDEE 400
Query: 258 DTDPRDAGGRGMDVSQGF 275
+ + + + GF
Sbjct: 401 EKIENEVEELLLSRADGF 418
|
Length = 505 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 4e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315
K +++ T V FS DG LLA+G D +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315
S + +++ T V FS DGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 325 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 376
L+ H+S I D++F+P LA+ S D T+RVW+ + S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 377 SLDFHPNKDDLICSCDGDGEIRYWSINN 404
+D++P ++CS D + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 8e-04
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 529 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
TL H G + ++A S + +AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 8e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 528 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
S TL H G + ++A S + Y+AS S D +KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 311 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 366
AVL HTD K +N L I DV F+P P +L T+S D T+ W G +
Sbjct: 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113
Query: 367 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417
GH+ V + FHP+ +++ S D + W + G V K + Q
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170
|
Length = 493 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 28/176 (15%), Positives = 42/176 (23%), Gaps = 8/176 (4%)
Query: 36 SMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDM--LIKLKMAQMHQQQQQQQQQQ 93
M +G G+ V + AGG + Q Q Q Q
Sbjct: 122 QMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMN 181
Query: 94 QQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKR 153
Q P Q Q Q +M G + N Q+ + +++
Sbjct: 182 QGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQ------GQPGGQQQQNPQMQQQLQNQQQ 235
Query: 154 KQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMM 209
+Q GPA++ V P L M
Sbjct: 236 QQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGM 291
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 567 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.93 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.83 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.8 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.8 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.79 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.72 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.69 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.68 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.67 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.66 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.64 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.63 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.63 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.62 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.6 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.6 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.58 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.57 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.49 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.49 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.49 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.49 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.43 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.4 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.4 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.4 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.36 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.31 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.3 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.28 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.28 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.25 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.24 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.23 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.23 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.23 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.22 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.21 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.17 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.16 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.14 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.07 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.06 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.06 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.05 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.05 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.01 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.0 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.98 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.96 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.96 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.94 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.9 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.89 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.88 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.86 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.85 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.84 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.84 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.71 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.7 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.64 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.63 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.62 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.62 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.61 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.6 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.6 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.59 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.56 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.53 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.51 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.5 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.49 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.48 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.47 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.47 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.43 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.4 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.4 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.39 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.37 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.36 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.36 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.33 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.33 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.3 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.3 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.27 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.25 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.22 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.2 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.09 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.04 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.03 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.03 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.98 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.95 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.95 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.94 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.92 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.84 | |
| PRK10115 | 686 | protease 2; Provisional | 97.76 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.76 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.76 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.76 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.73 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.71 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.7 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.67 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.6 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.59 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.57 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.56 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.52 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.5 | |
| PRK10115 | 686 | protease 2; Provisional | 97.49 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.46 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.44 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.43 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.4 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.39 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.33 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.31 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.3 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.3 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.22 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.21 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.19 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.19 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.19 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.18 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.18 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.14 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.99 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.95 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.91 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.78 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.75 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.63 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.62 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.6 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.42 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 96.39 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.39 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 96.33 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.23 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.08 | |
| PLN02153 | 341 | epithiospecifier protein | 96.07 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.01 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.97 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.93 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.93 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.9 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.83 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.8 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.8 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.79 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 95.74 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.66 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.65 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.63 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.55 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 95.46 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.43 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.42 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.37 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.21 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.1 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.04 | |
| PLN02153 | 341 | epithiospecifier protein | 95.02 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.0 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.96 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.87 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.75 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.73 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.67 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.54 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.52 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.32 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.27 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.2 | |
| PLN02193 | 470 | nitrile-specifier protein | 94.18 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 94.17 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.09 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.03 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.87 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 93.83 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.75 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.73 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.71 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.64 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.45 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.4 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.4 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.34 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.33 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.13 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.04 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.84 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.47 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 92.46 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.36 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 92.36 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.2 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 92.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.01 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.84 | |
| PLN02193 | 470 | nitrile-specifier protein | 91.78 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 91.68 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 91.64 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.62 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.38 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.1 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.05 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 90.96 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.93 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 90.53 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.49 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.44 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 90.03 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.61 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.39 | |
| PF11498 | 468 | Activator_LAG-3: Transcriptional activator LAG-3; | 89.29 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.06 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 88.97 | |
| PF06752 | 230 | E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: | 88.91 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.67 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 88.24 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 88.24 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.89 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 87.67 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.67 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.29 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 87.04 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 86.84 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.84 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=365.98 Aligned_cols=284 Identities=26% Similarity=0.450 Sum_probs=258.5
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-eeecccCccEEEEEECC-----CCCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-~~l~~h~~~V~~i~fsp-----~~~~l~s~s~dg 351 (567)
....+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..|.+|...|++++|.| ..++|++++.||
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 456788999999999999999999999999999999999988765 67999999999999966 567999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEE---------
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR--------- 419 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~--------- 419 (567)
.|+|||+.. +.++..+.+|+.+|+|++|-. ..+|++|+.|++|++|+...|.+.+.++++. +.++
T Consensus 228 ~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 228 SVRIWDTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CEEEEEccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999987 889999999999999999974 5589999999999999999999998888753 3333
Q ss_pred --EecCCC-------------------------EEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEE
Q 008393 420 --FQPHLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 420 --~~~~~~-------------------------~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s 471 (567)
|.+.+. ++++++.|.++.+|+.... +++..+.+|..-|+.+.|+||++++|+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 333333 4899999999999998654 688899999999999999999999999
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEec
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 549 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 549 (567)
++-| .|++||-++| +.+..+.+|-..|+.++|+.|.++|++++.|.++++||+++.+.. .+.+|...|.++.|+|
T Consensus 385 aSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred eecccceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 9999 9999999888 889999999999999999999999999999999999999998877 7889999999999999
Q ss_pred CCCEEEEEECCCcEEEcC
Q 008393 550 ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iWd 567 (567)
||..+++|+.|..++||.
T Consensus 462 DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceeecCCCceEEEeec
Confidence 999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=351.40 Aligned_cols=287 Identities=22% Similarity=0.403 Sum_probs=263.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCC----CCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 430 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 430 (567)
..++....+.+.+|...|++|+|.|- ...++++++.||.|+|||+..+.++..+.++ ++|++|--+ +.++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99988888999999999999999763 2347789999999999999999999998876 456666543 788899
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc-----------CCC-------------------------CEEEEEeC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSE 474 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s-----------p~g-------------------------~~l~s~s~ 474 (567)
+.|++|++|+...|++...+++|...|+.|+++ |.+ ..|++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 223 35999999
Q ss_pred C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC
Q 008393 475 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~ 552 (567)
| ++.+|+-.. ..+++..+.+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-+.|+.++|+.|.+
T Consensus 345 d~tlflW~p~~--~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFK--SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccc--cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 9 999999753 34688899999999999999999999999999999999999999988 8899999999999999999
Q ss_pred EEEEEECCCcEEEcC
Q 008393 553 YVASASHDKFVKLWK 567 (567)
Q Consensus 553 ~l~s~s~Dg~I~iWd 567 (567)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=342.36 Aligned_cols=285 Identities=27% Similarity=0.438 Sum_probs=265.6
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~i 355 (567)
.....--+-+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||+|+.||+|++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 333444567899999999999999999999999999999999999999999999999999997 568999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 432 (567)
|++++ ..++..+.+|...|..++|+|+|.+|. |++.|.+-++||++++..+....+ ++..++|.++|..+++|+.
T Consensus 246 w~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L~-TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 246 WKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFLG-TASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eccCC-CcchhhhhcchhhheeeeecCCCceee-ecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc
Confidence 99997 678899999999999999999987555 999999999999999988766655 5788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC-CC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TY 510 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp-~~ 510 (567)
|..-+|||+++++++..+.+|..+|.+|+|+|+|..||+|+.| +++|||++.. ..+..+..|.+-|..+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCC
Confidence 9999999999999999999999999999999999999999999 9999999865 56899999999999999999 78
Q ss_pred CeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.++++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 89999999999999999999888 7899999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=312.18 Aligned_cols=290 Identities=20% Similarity=0.382 Sum_probs=262.9
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
..++..+.|++|.++|+++.|++|.++|++++.||.+.|||.-+...++.+.-...+|..++|+|.++++|+|+.|....
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 34566689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC--C---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEec-CCC
Q 008393 355 VWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HLG 425 (567)
Q Consensus 355 iwd~~~~--~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~-~~~ 425 (567)
||++.+. . ...+.+.+|.+.+.|+.|..|+ +++ +++.|.++.+||+++++.+..|.++ +..+.+.| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC-ceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999853 1 3456789999999999999864 455 9999999999999999999999875 56778999 889
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
.+++++.|+..++||++.+.++..|.+|+..|++++|.|+|.-+++|++| +.++||++...+ ..+..-.....+|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999999999999999 999999998633 2223333445679999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+..|++|++|..|..+.+||.-.++.+ .+.+|++.|++|..+|||..|+||++|..||||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999888877 8889999999999999999999999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=298.17 Aligned_cols=286 Identities=24% Similarity=0.424 Sum_probs=262.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC-CCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~-~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+..+.+|++.|+.+.|+|+|.+||+||.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 44567899999999999999999999999999999995 46677888999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+++ ++.++.+++|..-|.+++-..-|..++++++.|+++++||+++..+++.+ +...+.+.|...+..+++++-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999 88899999999999999987788899999999999999999999999999 567889999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC-ceEEEeecCCC----ceEEEEEeCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 509 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~~~~----~i~~~~~sp~ 509 (567)
|++||++.....+.+.+|.+.|+.|..+++|.++.+-+.| ++++||++..... .++..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999876443 34666666533 3567899999
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+.++-+|+.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999885555 89999999999999999999999999999876
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=315.25 Aligned_cols=244 Identities=25% Similarity=0.420 Sum_probs=231.0
Q ss_pred eeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
..+..|++|++.|.++.|+|. +..||+|+.||++++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 467789999999999999997 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEEC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 432 (567)
||+.+ +..+....||...|.+|+|.+||. ++++|+.|..-+|||++++.++..+.++ +..+.|+|+|-.+++++.
T Consensus 288 WD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99998 666777889999999999999986 7889999999999999999999999875 567899999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
|++++|||++....++++.+|.+-|+.|+|+| .|.+|++++.| +++||.-++. .++..+.+|++.|.++.+++++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999999999999999999999999999998 88999999999 9999998776 8899999999999999999999
Q ss_pred CeEEEEEcCCeEEEEE
Q 008393 511 PSLLVIGCYQSLELWN 526 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd 526 (567)
.+|++++.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=282.50 Aligned_cols=283 Identities=21% Similarity=0.374 Sum_probs=244.3
Q ss_pred eeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCC-----CCeeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~-----~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.....+++|++.|+.++..+. -..|++++.|.++.+|++. .|...+.+++|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678999999999999987 4688999999999999875 5778899999999999999999999999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecC--CC
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH--LG 425 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~--~~ 425 (567)
++++||+.+ ++..+.|.+|...|.+++|++|...+ ++|+.|.+|++|++...-....... -+.+++|+|. ..
T Consensus 86 ~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecC-CcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999998 68889999999999999999997655 4999999999999986654444333 4789999999 67
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
.++.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 78889999999999999999999999999999999999999999999999 9999999876 5555554 67889999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE-E----eccc-----cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~----~~~h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+|+...|+++ .+..|+|||+.++.++ . +.+. .....+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999987655554 4456999999998766 1 1122 23456789999999999999999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=297.05 Aligned_cols=287 Identities=23% Similarity=0.398 Sum_probs=263.3
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.+++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..+++++...||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 431 (567)
.||++. .+.++.+.+|-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+.++ +..+.+.|.+..+++++
T Consensus 219 CwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998 778899999999999999999854 6669999999999999999999998875 56777899999999999
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
.|++|++||++.++....+..|+..|.+++.+|....+|+++.|.|+-|++..+ ..+..+.+|...+.++....|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999999999999776 6667788999999999998877
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEe---------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~~~---------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++|+.+|.|.+||.+++..+.. ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588899999999999999876521 12345789999999999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=295.58 Aligned_cols=288 Identities=26% Similarity=0.507 Sum_probs=268.2
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.+.+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|.+.|.+|.|+..|++|++++.|-.+++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34577788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEEC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 432 (567)
||.++...+++.+.+|...|.+++|.|.|++++ +|+.|.+|+.|++.++.++++|.++. ..++.+.+|..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeee-ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 999986678888999999999999999986555 99999999999999999999999874 55667788888888888
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC---------------CCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~---------------g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|.+|++|-+.++.+...+..|+.+|.+++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999763 2599999999 9999999888 89999999
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.+.|..++|+|.|+||+++..|+++++||+++..++ .+.+|...|+++.|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999988 7889999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=274.56 Aligned_cols=266 Identities=21% Similarity=0.439 Sum_probs=239.8
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEeccCCCcEEEE
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 378 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l 378 (567)
-+|+++++|.+|++|...+|.+..++......|+.+...|+++.||+++.-. |++||+.+... ++.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEE
Confidence 4899999999999999999999999999999999999999999999998765 99999998554 789999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC-CCC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTK 455 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~ 455 (567)
.|..+|+ ++++|++||+++|||++...+.+.+. .+++.+..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999976 55699999999999999988776654 5789999999999999999999999999999877666543 456
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC---CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~---~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.|.++...|||.+|+.+... ..++|++-+. .....+..+..|...+..|.++|++++|++++.|.+++||+.++..
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999998887 9999999764 3456778899999999999999999999999999999999999872
Q ss_pred EE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 TM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. .+.+|...+..++||.||+||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 6789999999999999999999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=293.34 Aligned_cols=361 Identities=20% Similarity=0.330 Sum_probs=291.3
Q ss_pred CCCcCeEEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEeecc---CCCCCCCCCccceeccCCc
Q 008393 202 TTSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH---DDTDPRDAGGRGMDVSQGF 275 (567)
Q Consensus 202 ~~~~~~~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~d~~~~~~~~~~~~ 275 (567)
..+.....|+|.|.+.+. ++.+++||...-+.+.+-+...-.|...|---.+-.. ....+++..++.+-...|
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 334566789999998766 4677999998754444444333333332211111000 012334445555555555
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
..+..+.||...|.+++|-|.-- ++++|+.|+.|.+|+-..++...+++.|...|.|+.|+|||+++++++.||+|.
T Consensus 138 --~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 138 --NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred --CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 34667889999999999999664 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee----EEEEecCCCEE
Q 008393 355 VWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRFQPHLGRY 427 (567)
Q Consensus 355 iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~l 427 (567)
+||-.+ ++.+..+. +|.+.|.+|+|+||+..++ +++.|.+++|||+.+.++++++..+.. .+-.--..+.|
T Consensus 216 iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 216 IYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 999988 66677776 8999999999999988776 999999999999999999998875432 23222337899
Q ss_pred EEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC-----------------------
Q 008393 428 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG----------------------- 483 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~----------------------- 483 (567)
++.+.+|.|.+++.....+...+.+|...|+++..++++++|++|+.| .|.-|+..
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 999999999999999999999999999999999999999999999999 99999986
Q ss_pred --------------------------------------------------------------------------------
Q 008393 484 -------------------------------------------------------------------------------- 483 (567)
Q Consensus 484 -------------------------------------------------------------------------------- 483 (567)
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence
Q ss_pred -------------------CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCe
Q 008393 484 -------------------SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLI 542 (567)
Q Consensus 484 -------------------~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V 542 (567)
.+........+..|...+++++|+||+.+|+++...+.+.+||+.+.+.. .+.-|...|
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 01011111233446778999999999999999999999999999988775 556799999
Q ss_pred eEEEEecCCCEEEEEECCCcEEEcC
Q 008393 543 AALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 543 ~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+++|+|+..+||||+.|-+|.||+
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEE
Confidence 9999999999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=314.42 Aligned_cols=284 Identities=30% Similarity=0.551 Sum_probs=254.7
Q ss_pred eeeecc-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 280 ANSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 280 ~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+.+ |...|.|+.|+++|++|++++.++.+++|+..+++ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 445544 48899999999999999999999999999998888 788889999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 433 (567)
|+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+.+ .+..++|++++..+++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966678999999999999999999998 7888999999999999999999999876 46778899999999999999
Q ss_pred CeEEEEECCCCe--EEEEecCCCCC--eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc---eEEEE
Q 008393 434 NVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHSCV 505 (567)
Q Consensus 434 g~I~i~d~~~~~--~~~~~~~h~~~--V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~---i~~~~ 505 (567)
+.|++||+.++. +...+.++... +++++|+|++++|++++.| .+++||+..+ .++..+.+|... +....
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777777665 9999999999999999999 9999999876 566666666654 44455
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE-Eeccc-cCCeeEEEEecCCCEEEEEE--CCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~l~s~s--~Dg~I~iWd 567 (567)
+++.+.++++|+.|+.|++||+.++..+ .+.+| ...+..+++++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987666 78889 89999999999999999998 789999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=271.36 Aligned_cols=280 Identities=23% Similarity=0.327 Sum_probs=247.2
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~f 337 (567)
.+.|.++|.|...+| .+.++++...+.|..+.+.||+++||+++ .-.|++||+.+++ ++.++.+|...|+++.|
T Consensus 16 A~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 16 AGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred ccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 456778999999999 68888888889999999999999999987 5689999998765 58999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----C
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G 413 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~ 413 (567)
..+|+++++|++||+++|||++. ..+.+.+ .|..+|+++..+|+...|| +|..+|.|++||+.+..+...+- .
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eecCeEEEecCCCceEEEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999999999999999999997 4444444 5889999999999988777 99999999999999987766543 3
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCC------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
.+..+.+.|++..++++...|..++|++-+. +++.+++.|.+.+..+.++||+++||+++.| +++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-
Confidence 5678899999999999999999999998653 5677889999999999999999999999999 9999999765
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 548 (567)
.+.-..+.+|...+..|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred -eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4566778889999999999999999999999999999999999877 677888887777753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=302.78 Aligned_cols=276 Identities=22% Similarity=0.440 Sum_probs=248.7
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-..+|..+.|.|+|+.|++|+..|.+.+|+..++.....+..|...|+++.|++++.++++|+.+|.|++|+..- ..+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnV 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNV 172 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhh
Confidence 356889999999999999999999999999988888888899999999999999999999999999999999874 334
Q ss_pred EEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 366 RTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 366 ~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
+.+.+|. ..|++++|+|+.. .|++|++||+|+|||....+..+.+.++ +.++.|+|..+.+++++.|+.|++||.
T Consensus 173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 5555554 9999999999755 5569999999999999999888888764 688999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCY 519 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~d 519 (567)
+++.++.++.+|+..|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCC
Confidence 9999999999999999999999999999999999 9999999865 6677888999999999999955 566778899
Q ss_pred CeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999855544 4458999999999999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=292.84 Aligned_cols=296 Identities=23% Similarity=0.371 Sum_probs=252.4
Q ss_pred ceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec---ccCccEEEEEECCCCCeE
Q 008393 268 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~---~h~~~V~~i~fsp~~~~l 344 (567)
......|.+|+...+++.|..-|.|+.|+|||+++|+++.||+|.+||-.+++.+..|. +|.+.|.++.|+||++.|
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 34455689999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCC------------------------------------------ceeEEeccCCCcEEEEEEcC
Q 008393 345 ATSSFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHP 382 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~------------------------------------------~~~~~~~~h~~~V~~l~~~p 382 (567)
++++.|.+++|||+.+.. ..+..+.+|...|+++..++
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 999999999999987531 11344558999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEE-------------------------------E--------------------
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRV-------------------------------F-------------------- 411 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~-------------------------------~-------------------- 411 (567)
++.+ |++|+.||.|.-|++.++..-+. +
T Consensus 331 d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 331 DGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 9865 55999999999999865432110 0
Q ss_pred ----------------------e-----------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecCCCCC
Q 008393 412 ----------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKP 456 (567)
Q Consensus 412 ----------------------~-----------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~ 456 (567)
. -...+++++|++..+++|+.|+.|++|.+.... ....+..|.++
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 0 012346788999999999999999999998754 33456679999
Q ss_pred eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--
Q 008393 457 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 533 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-- 533 (567)
|++++|+||+.|||++... .|.+||+.+... .......|...|.+++|+|+..++++|+.|-.|.||+++.....
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 9999999999999999988 999999987643 44556668999999999999999999999999999999876443
Q ss_pred EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 534 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...+|...|+.+.|- +...|++.+.|..|++|+
T Consensus 568 iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 456899999999995 556899999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=303.51 Aligned_cols=353 Identities=22% Similarity=0.301 Sum_probs=293.2
Q ss_pred CcCeEEEecCCCccccCC---CceeeeCCCcchhhcccccccCCCCCCceEEeeccCC-------CCCCCCCccceeccC
Q 008393 204 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------TDPRDAGGRGMDVSQ 273 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~~---~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~d~~~~~~~~~~ 273 (567)
+.-.|.|.|.|..+++.+ .+++||...+.....+.-+.. -|.+.+.+.. .+..|+.+++|+...
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG------vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG------VVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc------eEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 344688888885555544 449999998754443332221 2444444433 456788999999986
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-----------------------------
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN----------------------------- 324 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~----------------------------- 324 (567)
.-+ ++..++.|.+.|++++|++|+..+++++.|..|.|||+...+...+
T Consensus 181 ~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 181 KRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred Cch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence 654 7889999999999999999999999999999999997642111100
Q ss_pred --------------------------------------------------------------------------------
Q 008393 325 -------------------------------------------------------------------------------- 324 (567)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (567)
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence
Q ss_pred ----------------------ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC---CceeEEeccCCCcEEEEE
Q 008393 325 ----------------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---GYSLRTFMGHSASVMSLD 379 (567)
Q Consensus 325 ----------------------l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~ 379 (567)
+.+|++.|.++....+|-+|++|+.|.++++|.++++ ..++....+|.+.|.+++
T Consensus 339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence 1126777777775556779999999999999988542 234556779999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeee---E---------EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCT---R---------VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~---------~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
++..+..++++++.|++|++|++...+.. . .+...+++++++|+...+++++.|.+.+||+++.....
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 99999999999999999999999873211 1 12346899999999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 448 LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
.++.+|...|+++.|++..+++++++.| +|+||.+.+. .|+.++.+|...|..+.|-.++..|++++.||-|++|+
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999999999999999999 9999999776 89999999999999999999999999999999999999
Q ss_pred CCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 527 MSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++++. ++.+|...|++++.++.+.+++||+.||.|.+|+
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999988 8999999999999999999999999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=285.90 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
..+++|.++|.+++|++++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 56779999999999999999999999999999999999988889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
...+..+..|...|.++.|++++ .++++++.|+.|++||+.+++....+.. .+..+.|++++..+++++.++.|.
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 4666777799999999998888777663 478899999966666666699999
Q ss_pred EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999888999999999999999999888888878 9999999765 5666666778899999999998877777
Q ss_pred EcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 517 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999977665 6678889999999999999999999999999997
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=296.04 Aligned_cols=288 Identities=23% Similarity=0.383 Sum_probs=253.8
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC-CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d-g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
..|..++.+.-...+|..++|+..|++||.|+.. |.+.||++.+...+....+|...+++++++|||.+||+|+.||.|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 3456777888788899999999999999998764 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeEEEEecCCCEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA 429 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~ 429 (567)
+|||..+ +.++.++..|+..|+.+.|+..++.++ +.+-||+|+.||+...++.++|..+ ..+++..|.|..+++
T Consensus 375 KvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 375 KVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999998 899999999999999999999977555 8899999999999999999999764 467888998888888
Q ss_pred EECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 430 AAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 430 ~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
|+.|. .|.+|++.+|+.+-.+.||+++|.+++|+|++..|++++.| +|++||+-... ..+.++. ....+..++|.
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEc
Confidence 88876 89999999999999999999999999999999999999999 99999996431 2333333 46678999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEE-E--------------------eccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTM-T--------------------LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~-~--------------------~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|+|+.|+++..||.|.+||...+..+ . -.+....++.+++++||.+|++||....|+||
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999999999999998765432 0 11234578999999999999999999999998
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
+
T Consensus 610 ~ 610 (893)
T KOG0291|consen 610 D 610 (893)
T ss_pred E
Confidence 5
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=261.58 Aligned_cols=280 Identities=22% Similarity=0.420 Sum_probs=238.7
Q ss_pred eeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCC---Ceeeeeec-ccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 278 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~---~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
..++.+.+|++.|..++|+|- |..||+|+.|+.|++|+... ..++..+. +|+..|+.++|+|.|++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 467889999999999999998 89999999999999999884 45555553 79999999999999999999999999
Q ss_pred EEEEEcCC-CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeEEEeCC---eeEEEEecCCC
Q 008393 353 VRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHLG 425 (567)
Q Consensus 353 I~iwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~---~~~~~~~~~---~~~~~~~~~~~ 425 (567)
+.||.-.. ..+++.++.||...|.|++|+++|+ ++++|+.|+.|.||.+... ++..++..+ +..+.|+|...
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99998663 2467889999999999999999986 5669999999999999854 455666654 56788999999
Q ss_pred EEEEEECCCeEEEEECC---CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 426 RYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~---~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
.|++++.|++|++|+-. ...+..++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~ 236 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRAL 236 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccce
Confidence 99999999999999876 458899999999999999999999999999999 9999986532 112355778
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCC---cEE-----EeccccCCeeEEEEecC-CCEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSEN---KTM-----TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~---~~~-----~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iWd 567 (567)
+.+.|. ...|++++.|+.|++|..... ... ....|...|+++.|.|. .++|++|++||.|++|.
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 888998 446999999999999987643 111 34578999999999994 67899999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=283.05 Aligned_cols=301 Identities=23% Similarity=0.348 Sum_probs=264.0
Q ss_pred CCCCCCccceeccC-Cccceeeeeec------c----CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc
Q 008393 260 DPRDAGGRGMDVSQ-GFSFKEANSVR------A----STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH 328 (567)
Q Consensus 260 ~~~d~~~~~~~~~~-~~~~~~~~~l~------~----h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h 328 (567)
+..+.+.|+|++.. .........|+ + .+..|++++|+.+|.+||+|..||.+++|+. +|..+.++..|
T Consensus 197 g~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~H 275 (524)
T KOG0273|consen 197 GSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQH 275 (524)
T ss_pred cCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEec-Cchhhhhhhcc
Confidence 44566778888764 22222222222 1 2467999999999999999999999999986 67889999999
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
.++|.++.|+.+|+||++++.|+++.+||..+ +.....+.-|..+-..+.|-.+. -|++++.|+.|+++.+....++
T Consensus 276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPV 352 (524)
T ss_pred CCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcc
Confidence 99999999999999999999999999999987 66777788888887888887553 4668999999999999998888
Q ss_pred EEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC---------CEEEEEeCC-
Q 008393 409 RVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED- 475 (567)
Q Consensus 409 ~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g---------~~l~s~s~d- 475 (567)
.++.+ .+.++.|+|.+..|++++.|++++||......+...+.+|...|..+.|+|+| ..|++++.|
T Consensus 353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 88765 57889999999999999999999999999999999999999999999999965 478889988
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
+|++||+..+ .+++.+..|..+|++++|+|+|+++++|+.||.|.+|+.++++.+.-....+.|..++|+.+|.+|.
T Consensus 433 tV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 433 TVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred eEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence 9999999777 8999999999999999999999999999999999999999999998777888899999999999999
Q ss_pred EEECCCcEEEcC
Q 008393 556 SASHDKFVKLWK 567 (567)
Q Consensus 556 s~s~Dg~I~iWd 567 (567)
.+-.|+.+++-|
T Consensus 510 ~~~sd~~vcvld 521 (524)
T KOG0273|consen 510 ACASDGSVCVLD 521 (524)
T ss_pred EEecCCCceEEE
Confidence 999999998753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=284.07 Aligned_cols=281 Identities=24% Similarity=0.481 Sum_probs=246.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCC--Ceee--eeec----------ccCccEEEEEECCCCCe
Q 008393 279 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSK--TNLE----------EHSSLITDVRFSPSMPR 343 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~--~~~~--~~l~----------~h~~~V~~i~fsp~~~~ 343 (567)
.++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++.. .... ..|+ ..+..|++++|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 445556 999999999999665 999999999999999864 1111 1111 12457999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEE
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 420 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~ 420 (567)
||+|+.||.++||+.. +..+.++..|.++|.+|.|+..|.+++ +++.|+++.+||..++.....|.-+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999997 567789999999999999999988666 99999999999999999888776543 34667
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
..+ ..+++.+.|+.|+++-+....++.++.+|.++|.+|.|.|.|.+|+++++| +++||..... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 655 788899999999999999999999999999999999999999999999999 9999998654 78888999999
Q ss_pred ceEEEEEeCCCC---------eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~~---------~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|+.+.|+|.|. .+++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+|||+|+.||.|.||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999753 6899999999999999999888 7889999999999999999999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=265.80 Aligned_cols=263 Identities=19% Similarity=0.320 Sum_probs=224.7
Q ss_pred CCCCCCccceeccCC-ccc-eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQG-FSF-KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~-~~~-~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
..+|..+-+|++... ..+ ..++.|+||...|..++.++||++.++++.|+++++||+.+++....|.+|...|.+++|
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAF 113 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEe
Confidence 346666777776543 112 347889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--CCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeCC
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG 414 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~~ 414 (567)
++|.+.|++|+.|.+|++|++.. .+..++.. +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....+.++
T Consensus 114 s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 114 STDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred cCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence 99999999999999999999985 33344433 37899999999985 567779999999999999999988887654
Q ss_pred ---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceE
Q 008393 415 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 491 (567)
Q Consensus 415 ---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i 491 (567)
++.+.++|+|..++.|+.||.+.+||++.++.++.+. |...|.+++|+|+..+|+.+....|+|||+.++ .++
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v 267 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVV 267 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---hhh
Confidence 6788999999999999999999999999999987776 788999999999988887777669999999876 334
Q ss_pred EEeec---------CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 492 HELSC---------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 492 ~~~~~---------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.++.. ......+++|+++|..|++|..|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 33322 23446788999999999999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=294.01 Aligned_cols=290 Identities=19% Similarity=0.361 Sum_probs=252.3
Q ss_pred cceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCC-CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 276 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
+-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4457789999999999999999 899999999999999999876 89999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ 430 (567)
++||+++ +.++..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+. +.+..+.|.+.+.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 66666665 456789999999998888899999999999999999887765 457788999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC--CceEEEEE
Q 008393 431 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 506 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~--~~i~~~~~ 506 (567)
+.|+.++||+.+....+..... +.....+|..+|+++++++-+.| .|.+|.+...........+.+|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866654332 23345688999999999999999 99999976543333344455553 44567799
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
+|||.+|++|..+|.+++||.++.+.+ .+.+|.+++..+.|+|.. ..||+|+.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999998888 888999999999999965 5799999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=283.21 Aligned_cols=287 Identities=20% Similarity=0.321 Sum_probs=242.9
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC---CeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~---~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
.+++.+...+..|++.|+-+.||++|+|||+++.|.+..+|++.. .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456778899999999999999999999999999999999998753 56688999999999999999999999999999
Q ss_pred CcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCC
Q 008393 351 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLG 425 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~ 425 (567)
..+.+||+.+ +.....+. +|...+.+++|.|||..++ +|+.|+.|..||+.... +...+ ..+.++++.++|.
T Consensus 291 e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred HheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 9999999998 55444443 4568899999999998766 99999999999998543 22222 3467899999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc---e
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---F 501 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~---i 501 (567)
.+++.+.|..|++|+.++...+..+. ...+|++++.+.+++++++.-.+ .|++||++.. ..+..+.+|.-. |
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999999876664444 44789999999999999998888 9999999743 566666666443 3
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
.+|-=-.+..++++|+.|+.|+||+..+++.+ .+.+|...|++++|+|.. .++|+||+||+||||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33333345588999999999999999999988 889999999999999965 5799999999999994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=268.69 Aligned_cols=299 Identities=19% Similarity=0.255 Sum_probs=264.7
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
+++.|...-+|+..++. ....+.+|+..|+|+.|+.||.+||||+.+|.|.||+..++.....+...-..|.-+.|+
T Consensus 81 TGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred ecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence 55667777899999984 778899999999999999999999999999999999999999999998778889999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----C
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 414 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~ 414 (567)
|.+..|+.|+.||.|.+|.+.+ +...+.+.+|..++++=.|.|+|++++ ++..||+|++||+.++..+..++. .
T Consensus 158 p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCc
Confidence 9999999999999999999998 467789999999999999999988666 999999999999999999888773 4
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--------CCCCCeeEEEE---cCCCCEEEEEeCC-eEEEEeC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCW---DPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--------~h~~~V~~l~~---sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..++.++..+..++.+..++.+++.+..+++.+.... .+...+.++.+ +..=.+.|+|+-| +|.|||+
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 6778888888899999999999999999999888776 34444555554 4455688999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 483 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
... .++..-.|...|..+.|-+ ..+|++++.+|.|+.||.++|..+ .+.+|...|.+++++|++++++|++.|+
T Consensus 316 a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 316 AAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 764 3444455788899999999 788999999999999999999988 8899999999999999999999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
+.+||+
T Consensus 391 ~a~VF~ 396 (399)
T KOG0296|consen 391 TALVFE 396 (399)
T ss_pred eEEEEe
Confidence 999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=256.86 Aligned_cols=243 Identities=24% Similarity=0.442 Sum_probs=219.3
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------eeeeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
.++.+.-....|..++|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|++.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCce
Confidence 34455556788999999999999999999999999999855 456779999999999999985 58999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 429 (567)
..+||+++ +..+..|.+|.+.|.+|++.|...+.+++|+-|+..++||++.+.++..|.++ ++.++|.|++.-+++
T Consensus 168 CalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 168 CALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 99999998 88889999999999999999944556779999999999999999999999874 688999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
++.|++.++||++....+..+.. ...+|++++|+..|++|++|..| ++.+||.-.+ +.+..+.+|++.|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEE
Confidence 99999999999999888877763 34579999999999999999999 9999999665 788899999999999999
Q ss_pred eCCCCeEEEEEcCCeEEEEE
Q 008393 507 HPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd 526 (567)
+|||..+++|+.|..|+||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=289.99 Aligned_cols=352 Identities=19% Similarity=0.289 Sum_probs=281.3
Q ss_pred CeEEEecCCCccccCCC---ceeeeCCCcchhhcccccccCCCCCCceEEeeccC---CCCCCCCCccceeccCCcccee
Q 008393 206 PLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD---DTDPRDAGGRGMDVSQGFSFKE 279 (567)
Q Consensus 206 ~~~~~~~dg~~~~~~~~---~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~ 279 (567)
..++..||+..+++... .++|+..+|.++..+...-+ -+--...|-... .+++.|+.+++||+..+ ..
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He---~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~ 139 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE---APVITMAFDPTGTLLATGGADGRVKVWDIKNG---YC 139 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC---CCeEEEEEcCCCceEEeccccceEEEEEeeCC---EE
Confidence 35677778777766543 39999999977665553222 111122222222 25678889999999988 58
Q ss_pred eeeeccCCCCeEEEEEcCCCC--eEEEEeCCCcEEEEeCCCCee-eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~--~lasg~~dg~I~vwd~~~~~~-~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...|+||.+.|.++.|.|+-+ +|++|..|+.+++||+.+... +.++..|...|+++.|.+|+..+++++.|..+.||
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 899999999999999999764 589999999999999985554 88889999999999999999999999999999999
Q ss_pred EcCCCCc-------------------------e-----------------------------------------------
Q 008393 357 DADNPGY-------------------------S----------------------------------------------- 364 (567)
Q Consensus 357 d~~~~~~-------------------------~----------------------------------------------- 364 (567)
|+..-.. .
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 7631000 0
Q ss_pred ----------------------------------------------------------eEEeccCCCcEEEEEEcCCCCe
Q 008393 365 ----------------------------------------------------------LRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 365 ----------------------------------------------------------~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
...+.+|...|.+++...+| .
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~ 378 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-D 378 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-c
Confidence 11233788888888855554 5
Q ss_pred EEEEEeCCCcEEEEECCCCee----eEEE---eCCeeEEEEecCC-CEEEEEECCCeEEEEECCCCe-----EE----EE
Q 008393 387 LICSCDGDGEIRYWSINNGSC----TRVF---KGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQA-----CR----LS 449 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~----~~~~---~~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~-----~~----~~ 449 (567)
++++|+.|.++++|.++++.. +... ...+.+++++..+ ..|++++.|.++++|++...+ .+ ..
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 888999999999998854432 2222 3345667776554 457778889999999997721 11 13
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 450 LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 450 ~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
...|...|++++++|+.++||+|+.| +.+||+++.. .....+.+|...+.++.|++....+++++.|.+|+||.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 35699999999999999999999999 9999999744 8899999999999999999999999999999999999999
Q ss_pred CCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..++ ++.+|...|..+.|-.+++.|++|+.||.|+||+
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99998 8999999999999999999999999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=281.26 Aligned_cols=359 Identities=19% Similarity=0.314 Sum_probs=298.5
Q ss_pred CCcCeEEEecCCCccccCCCc--eeeeCCCcchhhccccccc----CCCCCCceEEeeccCC----CCCCCCCccceecc
Q 008393 203 TSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVE----DGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 272 (567)
Q Consensus 203 ~~~~~~~~~~dg~~~~~~~~~--~~Wd~~~g~~~~~~~~~~~----~~~~~~~v~~~~~~~~----~~~~d~~~~~~~~~ 272 (567)
.....+.|||||+..+....+ ++|-....... .+.-|.- .+.+++-+..-++.|. .+.+|...|+|.+.
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~ 175 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVD 175 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEec
Confidence 345679999999998876655 89988754321 2222221 2455555555566554 56889999999887
Q ss_pred CCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------------Cee--------
Q 008393 273 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------------------LKS-------- 321 (567)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-----------------------~~~-------- 321 (567)
.... -....+.+|++.|.++-|..+...+++.+.||.+.+|.... ++.
T Consensus 176 ~~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 176 GNKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred cccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 6544 34567889999999999999999999999999999997651 111
Q ss_pred ---eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 322 ---KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 322 ---~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
+.-+......|++.+|++..+.|++|-..|...+|++.. -.+++.+.-....|..+.|+..|+.+.+.|+.-|.+.
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 011222346799999999999999999999999999987 6778888777789999999999998887888889999
Q ss_pred EEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 399 YWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 399 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
||++.+...+....+ .+.+++++|+|..+++|+.||.|+|||...+-|+.+|..|+..|+.++|+..|+.|++.+-|
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 999999887776665 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcCC-eEEEEECCCCcEE-EeccccCCeeEEEEecCC
Q 008393 476 -SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALAVSTET 551 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg 551 (567)
+|+.||+... .+.+++... ...+.+++..|.|..+++|+.|. .|++|++.+|+.+ .+.+|+++|.+++|+|++
T Consensus 414 GtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 414 GTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred CeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 9999999655 666666654 34578889999999999998887 8999999999999 788999999999999999
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
..|+++++|.+||+||
T Consensus 491 ~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWD 506 (893)
T ss_pred CeEEeccccceEEEEE
Confidence 9999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=292.29 Aligned_cols=246 Identities=26% Similarity=0.451 Sum_probs=225.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-------------------------------eeeeeecc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 327 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-------------------------------~~~~~l~~ 327 (567)
+..++......++|+.|++|+++||.|..|..|++|.+... ....++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44556666778999999999999999999999999987631 12244678
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
|.++|..+.|+|+.++|++++.|++||+|.+++ ..++..++||..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888999999999999999996 6777999999999999999999
Q ss_pred eEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 408 TRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 408 ~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
++.|-++ +.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++|++| .|++||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 9988764 6789999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 484 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 484 ~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 87 67788888999999999999999999999999999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=310.48 Aligned_cols=283 Identities=18% Similarity=0.305 Sum_probs=238.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----e----eeeeecccCccEEEEEECCC-CCeEEEEeCCCc
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKT 352 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~----~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~ 352 (567)
.+..|.+.|.+++|+++|++||+|+.|+.|+||++... . ....+. +...|.+++|++. +.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 35569999999999999999999999999999997532 1 122233 3467999999874 779999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEe-cCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~ 429 (567)
|+|||+.+ +..+..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.. .+.++.|. +++..+++
T Consensus 557 v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEE
Confidence 99999987 6777888999999999999985456777999999999999999988877654 45677775 46788999
Q ss_pred EECCCeEEEEECCCCe-EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC---CCceEEEeecCCCceEEE
Q 008393 430 AAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSC 504 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~---~~~~i~~~~~~~~~i~~~ 504 (567)
++.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|++||++... ....+..+.+|...+..+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 9999999999998865 567788999999999997 77899999999 99999997532 235678888999999999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE--------------EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.+|++|+.|+.|++|+....... ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 99999999999999999999998655322 1233556799999999999999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=282.17 Aligned_cols=336 Identities=19% Similarity=0.293 Sum_probs=263.3
Q ss_pred CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCC-----CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEE
Q 008393 221 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHF 295 (567)
Q Consensus 221 ~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 295 (567)
..+.+||.++|++...+-..... ..+.+....++ .+..|+.+++|+...+ .....+.+|...|+++.|
T Consensus 43 E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfngHK~AVt~l~f 115 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNGHKAAVTTLKF 115 (888)
T ss_pred ccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecccccceEEEEE
Confidence 34689999999765544432221 22445555444 4578999999998877 677889999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec------
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM------ 369 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~------ 369 (567)
+..|..||+|+.|+.|.|||+-...-...+++|.+.|+...|..+.++|++.+.|+.|++||+++ ..++.+..
T Consensus 116 d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf~Thvd~r~Ei 194 (888)
T KOG0306|consen 116 DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCFETHVDHRGEI 194 (888)
T ss_pred cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceeeeEEecccceE
Confidence 99999999999999999999999899999999999999999999888999999999999998764 33333333
Q ss_pred --------------------------------------------------------------------------------
Q 008393 370 -------------------------------------------------------------------------------- 369 (567)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (567)
T Consensus 195 w~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 195 WALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred EEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008393 370 -------------------------------------------------------------------------------- 369 (567)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (567)
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s 354 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS 354 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence
Q ss_pred ----------------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEEC
Q 008393 370 ----------------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 370 ----------------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 432 (567)
+|...|.+++++.+. .++++| ..+.|++|+..+.+|++++... +.+..|.|.+.+++.|..
T Consensus 355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred CCCCccccccceeeeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEecc
Confidence 455555556655442 233233 3556666666666666666543 344557777777777777
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-----CCceEE----EeecCCCceE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-----EGECVH----ELSCNGNKFH 502 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~-----~~~~i~----~~~~~~~~i~ 502 (567)
.|.+.+||+.....+.++..|.+.|++++.+||++.+++|+.| +|++||+.-.. ..+.+. ..-.-...|.
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 7777777777777777778899999999999999999999999 99999985321 111111 1112356799
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++.++||+++|+++--|.+|+||-+.+-+.. .+.+|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 9999999999999999999999999998876 899999999999999999999999999999999
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=291.83 Aligned_cols=260 Identities=28% Similarity=0.491 Sum_probs=219.5
Q ss_pred EEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeeeeec
Q 008393 208 MMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR 284 (567)
Q Consensus 208 ~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~ 284 (567)
.-|++|+..++. ...+++|......+. .+.+ ..++...+....|...+..|...+ ...+++.
T Consensus 384 a~fSddssmlA~Gf~dS~i~~~Sl~p~kl~----~lk~--------~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~ 448 (707)
T KOG0263|consen 384 AEFSDDSSMLACGFVDSSVRVWSLTPKKLK----KLKD--------ASDLSNIDTESADVDVDMLDDDSS---GTSRTLY 448 (707)
T ss_pred EeecCCcchhhccccccEEEEEecchhhhc----cccc--------hhhhccccccccchhhhhccccCC---ceeEEee
Confidence 345566664433 345699988753221 1111 122233333333443444444333 3456699
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
||.++|+.+.|+|+.++|++++.|++|++|.+.+..++-.+++|..+|+++.|+|.|-|+||++.|++.++|..+. ..+
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~P 527 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKP 527 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 788
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
++.+.+|-+.|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.++ +.+++|+|+|.++++|+.|+.|.+||+
T Consensus 528 lRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999999999999999999966 5669999999999999999999999874 688999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
.+++.+..+.+|++.|.+|.|+.+|.+||+|+.| .|++||+..
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999 999999964
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=265.28 Aligned_cols=259 Identities=27% Similarity=0.504 Sum_probs=237.1
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CeeeeeecccCccEEEEEECC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h~~~V~~i~fsp 339 (567)
.+|.++++||..++ +....++||++.|..++|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.+++|-|
T Consensus 127 s~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P 203 (406)
T KOG0295|consen 127 SEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP 203 (406)
T ss_pred cCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe
Confidence 35678999999888 45889999999999999999999999999999999999987 778888999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---EeCCee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTA 416 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~---~~~~~~ 416 (567)
.|.+|++++.|.+|+.|++++ +.++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.++.|... +...+.
T Consensus 204 ~gd~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred cCCeeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 999999999999999999999 89999999999999999999996 5888999999999999999966544 445677
Q ss_pred EEEEecCC---------------CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEE
Q 008393 417 QMRFQPHL---------------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480 (567)
Q Consensus 417 ~~~~~~~~---------------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iw 480 (567)
+++|.|.. ..+..++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+| ++++|
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 77776532 367788889999999999999999999999999999999999999999999 99999
Q ss_pred eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
|+.+. .|...+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 362 dl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 362 DLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99776 899999999999999999999999999999999999974
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=246.13 Aligned_cols=279 Identities=19% Similarity=0.331 Sum_probs=240.6
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
++.+.+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeEEEe---CCeeEEEEecCCCEEEEEEC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~~~~---~~~~~~~~~~~~~~l~~~~~ 432 (567)
+.+ ++.++.+.+|.+.|+.+.|+.+ ..++++|+.|..+++||.++.. ++..+. ..+..+. -.+..+++++.
T Consensus 88 V~T-Gkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS~ 163 (307)
T KOG0316|consen 88 VNT-GKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGSV 163 (307)
T ss_pred ccc-CeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeecc
Confidence 999 8899999999999999999977 4578899999999999998754 445443 3444444 44678999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc--eEEEEEeCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPT 509 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~--i~~~~~sp~ 509 (567)
||+++.||++.+.....+.+ .+|++++|+++++.++.++.| +|++.|-.+| +.+..+++|.+. -..|++...
T Consensus 164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence 99999999999987666654 589999999999999999999 9999999888 666677777654 345678888
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-EeccccCC-eeEEEEecCCCEEEEEECCCcEEEc
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
...++.|+.||.|++||+.....+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 889999999999999999998887 56666666 899999998877777764 345555
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=272.48 Aligned_cols=275 Identities=25% Similarity=0.454 Sum_probs=233.0
Q ss_pred CCcCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCcccee
Q 008393 203 TSKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 279 (567)
Q Consensus 203 ~~~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (567)
...+.+.|.|+|++++++ +...||+.. .|..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~----------------------------------------------~fnF 130 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT----------------------------------------------SFNF 130 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCc----------------------------------------------eeeH
Confidence 356789999999988764 445666543 2333
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
...+..|..+|.++.|+++|.++++|..+|.|++|+..- ..+..+. .|...|++++|+|+...|+++++||+|+|||.
T Consensus 131 EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 445779999999999999999999999999999999754 4444444 45599999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.. .+..+.+.+|.-.|.+++|+|.. .+|++++.|..|++||.+++.|+.++.. .+..+.|++++++|++++.|..
T Consensus 210 ~~-~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 210 RM-PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred cC-CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 87 45556779999999999999984 5888999999999999999999877554 5677889999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
+++||+++.+.+..+++|+..|++++|+| ...+|++|+.| .|..|.+...+ .....-..|...|++++|+|-|..|
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeE
Confidence 99999999999999999999999999999 56688888888 99999986332 2223334688999999999999999
Q ss_pred EEEEcCCeEEEEECC
Q 008393 514 LVIGCYQSLELWNMS 528 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~ 528 (567)
++|+.|.++++|.-.
T Consensus 366 ~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRN 380 (464)
T ss_pred eecCCCcceeeeccC
Confidence 999999999999653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=279.76 Aligned_cols=278 Identities=23% Similarity=0.420 Sum_probs=254.5
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.||...|.+++||.|...+++|+ .+.|++|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS- 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS- 443 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh-
Confidence 5679999999999999998888875 679999999999999999754 799999999999999999999999999998
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----Ce----------eeEEEeCCeeEEEEecCCCE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GS----------CTRVFKGGTAQMRFQPHLGR 426 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-----~~----------~~~~~~~~~~~~~~~~~~~~ 426 (567)
...+.++..|.+.|++++..|++..++ +|+.|.+|++||..- +. ....+...+.++.++|++.+
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 677888889999999999999988776 999999999999752 11 12234567889999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
++++--|++|++|-+.+.+....+-||.-+|.|+..+||++++++|+.| +|+||-+.-| .|-..+..|...|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999776 78888999999999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|-|....++++|.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999999887766 8999999999999999999999999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=267.24 Aligned_cols=264 Identities=22% Similarity=0.466 Sum_probs=230.3
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.....|+|+.+.. ..+++|..|++|+|||..+..+...+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 4567899999864 489999999999999999999999999999999999996 45999999999999999998 889
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eEEEeCC---eeEEEEecCCCEEEEEECCCeEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGG---TAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+..... .+++.++ ++.+.|+ ..++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 99999999999999998 34777999999999999987653 2334444 3444444 458999999999999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
|++.+++++.++.+|...|-|+.+ .|+++++|+.| +|++||+..| .|+..+.+|+.-|.++.|. .+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cceeeecc
Confidence 999999999999999999988875 58999999999 9999999887 8999999999999999995 55799999
Q ss_pred cCCeEEEEECCCCcE----------EEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 518 CYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 518 ~dg~I~iwd~~~~~~----------~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.||+|++||+..+.- ..+..|.+.|..+.| |...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999999987642 156689999999999 466799999999999997
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=260.33 Aligned_cols=277 Identities=25% Similarity=0.437 Sum_probs=244.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--------ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--------~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+..+-+.|..|+|||.||++|+.||.|.||+..+|+....++ -+..+|.|+.|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445667899999999999999999999999999999887665 378899999999999999999999999999
Q ss_pred EcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEEC
Q 008393 357 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 432 (567)
.+.+ +.+++.|. .|...|+|+.|+.|+..++ +++.|.++++.-+++|++++.|+++. +...|.++|..+++++.
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999 77777776 8999999999999988777 99999999999999999999999864 55679999999999999
Q ss_pred CCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEee---cCCCceEEEE
Q 008393 433 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELS---CNGNKFHSCV 505 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~---~~~~~i~~~~ 505 (567)
||+|++|+.++.+|+.+|+. ...+|+++..-|. -..++.|... +|+|.++.. ..+..+. ..++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988875 4457888887774 4567777766 999999853 4444443 3456788999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|.|.++++.+.|+.++.|.+.+|+.. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999998877 7889999999999999999999999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=270.55 Aligned_cols=281 Identities=21% Similarity=0.392 Sum_probs=255.7
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+.+..|+..|.|+.|+|...+++++-..|.|.||+.++...+..+.-...+|++..|-...+++++|++|..|+||+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCC---eeEEEEecCC-CEEEEEECCC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAEN 434 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~---~~~~~~~~~~-~~l~~~~~dg 434 (567)
+ ...+..|..|...|.+|+.+|...+++ +++.|-.|++||.+.. .+..+|.++ +.+++|+|.. +.+++++-|+
T Consensus 86 t-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 86 T-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred c-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 8 788999999999999999999988666 9999999999999875 677888886 4678899965 5688888899
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCC--CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g--~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
+|++|.+....+..++.+|...|+|++|-+.| .+|++|++| +|+|||..+. .|+.++.+|...|..+.|+|.-.
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999998855 599999999 9999999765 89999999999999999999999
Q ss_pred eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 512 SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.|++|+.||+++||+..+-+.. ++.-..+.|+|++-.+.++.++.|.+.|.|.|
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999887766 55556678999999998889999998888754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=239.53 Aligned_cols=279 Identities=16% Similarity=0.247 Sum_probs=236.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.||..+++-+.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+|+..+.+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEE----eCCCcEEEEECCC-------CeeeEEEe---CCeeEEEEecCCCEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSC----DGDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 427 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~----~~dg~I~iwd~~~-------~~~~~~~~---~~~~~~~~~~~~~~l 427 (567)
++.+..+. ...+|..+.|+.+|+.++++. +.-+.|.++|++. .++...+. ..++.+.|.|.+..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 66666665 578899999999988766543 2347899999983 34344443 346777899999999
Q ss_pred EEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 428 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
+++..+|.|.+||++++ +.+.....|...|+.|++++|..++++++.| +-++||+.+. .++.++. ...++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence 99999999999999998 5556667899999999999999999999999 9999999876 5666655 467899999
Q ss_pred EeCCCCeEEEEEcCCe--EEEEECCCCc------------EE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 506 FHPTYPSLLVIGCYQS--LELWNMSENK------------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~--I~iwd~~~~~------------~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++|...+++.|+.... |.--+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|||.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999888888876542 2222333332 22 678999999999999999999999999999974
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=268.17 Aligned_cols=242 Identities=24% Similarity=0.369 Sum_probs=218.3
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
++.+.-..-+|.++.|-...+++++|+.|..|+||+..+++.+..+..|.+.|++|+.+|...+++++++|-+|++||.+
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 34444456688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCC--CEEEEEECCC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAEN 434 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~--~~l~~~~~dg 434 (567)
....+..++.||...|.+++|+|....-+++++-|++|++|.+....+..++++ +++++.+-+.+ .++++|+.|.
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 988889999999999999999999999999999999999999999998888876 57888887754 5899999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.|+|||..+..|+.++.+|...|..++|+|.-.++++|++| +|+||+-.+- +....+......+++++-.+.+..+
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i 284 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKI 284 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeE
Confidence 99999999999999999999999999999999999999999 9999998765 4555666677889999988888888
Q ss_pred EEEEcCCeEEE
Q 008393 514 LVIGCYQSLEL 524 (567)
Q Consensus 514 ~~~~~dg~I~i 524 (567)
++|..+|.|.+
T Consensus 285 ~vG~Deg~i~v 295 (794)
T KOG0276|consen 285 AVGFDEGSVTV 295 (794)
T ss_pred EEeccCCcEEE
Confidence 88877775544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=238.92 Aligned_cols=274 Identities=18% Similarity=0.268 Sum_probs=242.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ecccCccEEEEEECCC-CCeEEEEeCCCcEEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWD 357 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd 357 (567)
+.+++|..+|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66789999999999999999999999999999999987765544 4589999999999885 45899999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+.. +++........+. .-+.|+|+|.+++ .++.|..|.+.|.++.+..... +..+..++|+.+++.++.....|.
T Consensus 94 ~r~-~k~~~~i~~~~en-i~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGEN-INITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcc-eEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 5565555544444 4578999988665 7889999999999998877654 456778889988888888888899
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|.|......+++..++.|.....||.|+|+|++||+|+.| .+.+||+.. ..|++.+..++-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 999999954 488889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 515 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+++.|..|-|=++++|..+....+.++...++|+|...+||.+++|
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999888899999999999999999988865
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=245.13 Aligned_cols=279 Identities=22% Similarity=0.313 Sum_probs=245.1
Q ss_pred eeeccCCCCeEEEEEcC---CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 281 NSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~---dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
....+|+.+|..++||| +|-+|++++.|+.-.+-+-++|..+-++.+|.+.|+...++.+...-++++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35679999999999986 899999999999999999999999999999999999999999988999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEEeCCeeEEEEecCCCEEEEEECC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
.-+ +..+..+. |..-|..++|+.|.++|+ +|+.+..++|||++..+. +.-..+.+..+.|......+++++.|
T Consensus 88 a~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 998 66666665 889999999999987666 999999999999987653 23345567788899988999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
++|++||.+++..+..+. ...+|+++.++++|.+|.++....|++||..+. ..+..+. -...|.+..++|+...+
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFF 239 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceE
Confidence 999999999999998887 467899999999999988877779999999765 3444433 24557888999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|+.|..++.||+.+++.+.. .+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988833 79999999999999999999999999999994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=249.47 Aligned_cols=283 Identities=19% Similarity=0.273 Sum_probs=244.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.+..|..|+..|.+++.+|+.+++|||+.|..-.||++.++.....+.+|++.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+ +.....+......|.-+.|+|.+ .+++.|+.||.|.+|.+.++...+.+.++. ++=.|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 44455555567788999999975 566699999999999999988888888754 45569999999999999999
Q ss_pred EEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee--------cCCCc---eE
Q 008393 436 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------CNGNK---FH 502 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~--------~~~~~---i~ 502 (567)
|++||+.++.++..+... .....++.++..+..++.|+.+ .+++-+..++ +.+.... .+... |.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 999999999999888743 3457788899999999999988 8888877766 3333332 22333 44
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.++..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 45566667788999999999999999999888899999999999988 78999999999999997
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=275.36 Aligned_cols=258 Identities=29% Similarity=0.448 Sum_probs=224.7
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC-CCCeeeeeecccCccEEEEEECCCCCe
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPR 343 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~-~~~~~~~~l~~h~~~V~~i~fsp~~~~ 343 (567)
.+++|....... .+...+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++++++|...|++++|+|++++
T Consensus 182 ~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~ 260 (456)
T KOG0266|consen 182 LIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNL 260 (456)
T ss_pred cEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCE
Confidence 344555433322 355667899999999999999999999999999999999 667999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeEEEeC-----Cee
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTA 416 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~~~~~-----~~~ 416 (567)
|++|+.|++|+|||+.+ +.++..+.+|...|.+++|.+++..++ +++.|+.|++||+.++. +...+.. .+.
T Consensus 261 i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 261 LVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLV-SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred EEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEE-EcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 99999999999999998 889999999999999999999987555 77889999999999999 4455432 357
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCe---eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI---DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V---~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+.|+|++.++++++.|+.+++||+..+.+...+.+|...+ .+..+++.+.++++++.| .|++||+.++ ..+.
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~ 415 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQ 415 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhh
Confidence 78999999999999999999999999999999999988753 344557799999999999 9999999875 5667
Q ss_pred EeecC-CCceEEEEEeCCCCeEEEEE--cCCeEEEEECC
Q 008393 493 ELSCN-GNKFHSCVFHPTYPSLLVIG--CYQSLELWNMS 528 (567)
Q Consensus 493 ~~~~~-~~~i~~~~~sp~~~~l~~~~--~dg~I~iwd~~ 528 (567)
.+.+| ...+..+.+++..+++++++ .|+.|++|...
T Consensus 416 ~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 77778 88899999999999999998 67899999764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=249.57 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=221.5
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.+..+.+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.+ +....++.+|...|..+++++...++| +++.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 888899999999999999999877665 999999999
Q ss_pred EEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 399 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 399 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.||++..+.++.+.++ +.++..+|....+++++.|..+++||+++...+..+.+|..+|..+.+.|....+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999998875 5778899999999999999999999999999999999999999999999988889999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCE
Q 008393 476 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 553 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 553 (567)
+|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+ .+.+|..-|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999887 6778888899999999999998877776665 6999999999877 788999999999997776 7
Q ss_pred EEEEECCCcEEEcC
Q 008393 554 VASASHDKFVKLWK 567 (567)
Q Consensus 554 l~s~s~Dg~I~iWd 567 (567)
+++|++.|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88999999999997
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=258.10 Aligned_cols=284 Identities=21% Similarity=0.309 Sum_probs=244.5
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.+|.+..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3456788999999999999999999999999999999997666 77888899999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCe
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-....+..+......++.+..|+.
T Consensus 246 Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 246 WNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK 323 (459)
T ss_pred eeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence 99997 7788999999999999999876544 669999999999999999998887655444333333566777888999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC----CCceEEEEEeCCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTY 510 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~----~~~i~~~~~sp~~ 510 (567)
|++||.++..+......+. .|+++..+++|..|.+++.| ++.++|+++. .....+... ...++.++|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988775 99999999999999999988 9999999886 333333322 2337889999999
Q ss_pred CeEEEEEcCCeEEEEECCCCcEEE-ecc-ccC-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQSLELWNMSENKTMT-LTA-HEG-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~~-~~~-h~~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|+++|+.||.|+||++.++++.. +.. +.. .|++++|+|.|.+|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999998873 332 322 699999999999999999999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-30 Score=235.15 Aligned_cols=283 Identities=20% Similarity=0.309 Sum_probs=239.2
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC--CCcEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 354 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~--dg~I~ 354 (567)
|+..+.++.-.+.|.++.|+.+|.+|++++.|..|+|||..+++.+.++..+...|..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4556667777899999999999999999999999999999999999999999999999999887777777776 88999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-CeeEEEEecCCCEEEEEECC
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d 433 (567)
..++.+ .+.++.+.||...|.+|+.+|-++. +++++.|++|++||++..+|...+.. +....+|.|.|-.++++...
T Consensus 84 yLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeec-CceEEEcCCCCceEEEEEecCCCCe-EEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 999998 7889999999999999999999864 55999999999999999988877765 45667899998777777777
Q ss_pred CeEEEEECCCC--eEEEEec---CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc---eEEE
Q 008393 434 NVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHSC 504 (567)
Q Consensus 434 g~I~i~d~~~~--~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~---i~~~ 504 (567)
+.|++||++.- .+..++. +.....+.|.|+|||++|+.++.. .+++.|.-+|. .+..+..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence 79999999874 3333333 346788999999999999998888 89999998774 55555544333 3677
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecc-ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|.||++++++|+.||+|.+|+++++..+ .+.+ +.+++.++.|+|.-.++++++. .+.+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 89999999999999999999999999888 5555 7899999999998877777654 57777
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=270.52 Aligned_cols=280 Identities=22% Similarity=0.388 Sum_probs=248.3
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
|...+..|..++|+|.--+++++-..|.|.+||..-+.++..+.+|.++|+.|+|+|...++++|++|-.|+||+..+ .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence 445577888999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCeEEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
.++.++.+|-..|..+.|++.-..++ +++.|.+|+||+..+++++..++++. .|..|+|....+++++-|-+|++|
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 88999999999999999999977555 99999999999999999999999864 566799999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 440 DAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 440 d~~~~-----------------------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
|+... -..+.+.||...|+-++|+|.-.+|++|++| .|++|.+... ..-
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cce
Confidence 97521 1234678999999999999999999999999 9999999753 334
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+...+.+ ++.-..+..+.++.+|..++++.| +|+-+.+|
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 56778899999999999999999999999999999999988877 566666788999999999887755 55555554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=240.78 Aligned_cols=284 Identities=22% Similarity=0.393 Sum_probs=239.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------------------CeeeeeecccCccEEEEEECCC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------------------~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
+...+..|.+++.+.+|++||.++|+|+.|..|+|+|++. --.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4567889999999999999999999999999999999861 1356788899999999999999
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE------Ee
Q 008393 341 MPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FK 412 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~------~~ 412 (567)
...|++|+.|++|++||+..... ..+.+ ....+|.+|.|+|.|+.++ .|.....+++||+++..|... .+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999975321 11222 2457899999999988665 888889999999999887644 45
Q ss_pred CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC-CC-CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 413 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~-~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
+.++++.+++.+..+++++.||.|++||--.++|+.++.. |. ..|.+..|..+|+||++.+.| .|++|.+.++ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 6789999999999999999999999999999999988864 54 479999999999999999999 9999999887 6
Q ss_pred eEEEeecCCCc-----eEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 490 CVHELSCNGNK-----FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 490 ~i~~~~~~~~~-----i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
++.++.+.+.. -+...|+....|++.-... +.+.-||.++...+ .-.+|.+.+..+.-+|.+.-+++|+.|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 77776654221 2344677777777776554 58999999998776 3458999999999999999999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.+|+|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=264.86 Aligned_cols=243 Identities=25% Similarity=0.443 Sum_probs=210.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
+..|..|.++|..++|+|.+.++++||.|.+|+||+.++.+++.++.+|-+.|+.+.|++.-.+|+++++|.+|+||+..
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-----------------------------eEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----------------------------TRV 410 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-----------------------------~~~ 410 (567)
+ ..++..++||...|.|..|+|.. .+|++++-|.+|+|||+..-+. ...
T Consensus 124 s-r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 124 S-RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred C-CceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 8 88999999999999999999974 4788999999999999863211 112
Q ss_pred EeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 411 FKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 411 ~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
+.+ +++.++|+|.-..+++|+.|..|++|....-+ .+-+..+|.+.|.++-|+|.-+++++.++| .|+|||+..
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 233 46778899999999999999999999986543 345678999999999999999999999999 999999965
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
. ..+.++......++.++.+|..+. ++++.|+.+.+|.++
T Consensus 282 R---t~v~tfrrendRFW~laahP~lNL-fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 282 R---TSVQTFRRENDRFWILAAHPELNL-FAAGHDSGMIVFKLE 321 (1202)
T ss_pred c---cceeeeeccCCeEEEEEecCCcce-eeeecCCceEEEEEc
Confidence 5 778888888899999999999984 445555555566554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=253.01 Aligned_cols=291 Identities=16% Similarity=0.215 Sum_probs=234.7
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe----eeeee-cccCccEEEEEECCCCCeEEEEeC
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNL-EEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~----~~~~l-~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+......+++|+..|.++++.|.|-.|++|+.|..|++||+.... ..+.| ......|+++.|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 3445566789999999999999999999999999999999997432 22222 245567999999999999999988
Q ss_pred CCcEEEEEcCCCCcee------------EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe----
Q 008393 350 DKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---- 412 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~------------~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---- 412 (567)
...++|+|-+. ...+ ...+||...++|.+|+|..+..|++|+.||+++|||+...+ .+.+++
T Consensus 235 ~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 88999999874 2222 23358999999999999999999999999999999998754 334443
Q ss_pred ----CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE---EEEecCCCC--CeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 413 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC---RLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 413 ----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..++.++|++++..+++++.||.|.+|+...... ...-..|.. .|+||.|++||++|++-+.| ++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 2467788999999999999999999999865422 233356776 89999999999999999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc------CCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEE
Q 008393 483 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~ 555 (567)
+..+....+.+-.....+-+.|+|+|+.+.|++|.. .|.+++||..+...+ .+......|..+.|+|.-+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 976543333333334455688999999999999864 368999999988776 5666677899999999988899
Q ss_pred EEECCCcEEEc
Q 008393 556 SASHDKFVKLW 566 (567)
Q Consensus 556 s~s~Dg~I~iW 566 (567)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=248.10 Aligned_cols=273 Identities=21% Similarity=0.401 Sum_probs=230.5
Q ss_pred CCceEEeeccCC---CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee
Q 008393 247 DDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 323 (567)
Q Consensus 247 ~~~v~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~ 323 (567)
.+.|-++--.|+ .+.+|.++++||..+. .+.+.+.||++.|.|+.|.. +.+++|+.|.+|+|||+++++++.
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 344555544444 5778899999987554 67888999999999999975 499999999999999999999999
Q ss_pred eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 324 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
++-+|.+.|..+.|+. .++++++.|.+|.+||+..+.. +.+.+.||...|..+.|+. .+|++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEe
Confidence 9999999999999974 4999999999999999987542 3456779999999999973 3788999999999999
Q ss_pred CCCCeeeEEEeCCeeEEEEec-CCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 008393 402 INNGSCTRVFKGGTAQMRFQP-HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 479 (567)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~i 479 (567)
+.++++++++.++...++... .+..++.|+.|++|++||+..|.++..+.+|+.-|.||.|. .+.+++|+.| +|+|
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKV 424 (499)
T ss_pred ccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEE
Confidence 999999999998877766544 44556667779999999999999999999999999999996 5679999999 9999
Q ss_pred EeCCCCCCC------ceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 480 WTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 480 wd~~~~~~~------~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
||+..+..+ .|+..+..|.+.|..+.|. ...|++++.|.+|.|||+..+..-
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 999876443 3666777788888888885 456999999999999999876544
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=232.82 Aligned_cols=272 Identities=22% Similarity=0.361 Sum_probs=232.4
Q ss_pred cCeEEEecCCCccccCCCc---eeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 205 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~~~---~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
.-.++|.|+|..+++++.. -||++... .+...
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------------------------ceN~~ 84 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------------------------CENFW 84 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEecccc---------------------------------------------cccee
Confidence 3467999999988887765 45654321 12345
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 360 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~ 360 (567)
.+++|.++|..+.|.+|++.|++++.|++|+.||+++|+.++.+++|...|+.+.-+.-|. ++.+++.||+++|||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 6779999999999999999999999999999999999999999999999999998555454 677889999999999997
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
+..++++. ....++++.|...+...+ +|+-|+.|++||++......++.++ ++.+..++++..++.-+.|++++
T Consensus 165 -k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 165 -KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence 55666554 467799999998888777 9999999999999999999998874 67888999999999999999999
Q ss_pred EEECCCC----eEEEEecCCC----CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 438 ILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 438 i~d~~~~----~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
+||++-. +++..+.+|. .....++|+|++..+.+|+.| .+++||.... ..+..+.+|...|.++.|+|
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecC
Confidence 9999863 5677777753 345678999999999999999 9999999654 78999999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEC
Q 008393 509 TYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~ 527 (567)
....|++++.|.+|++=.+
T Consensus 319 ~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CCcEEEEeccCceeEeecc
Confidence 9999999999999987543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=227.54 Aligned_cols=263 Identities=22% Similarity=0.368 Sum_probs=219.1
Q ss_pred CCCCCCCccceeccCCccceeeeeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDV 335 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i 335 (567)
..+.|..+|+|+...+-++.+...+. +|+..|..++|+|.|++||+|+.|.++.||.-. +++++.+|++|...|.|+
T Consensus 32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV 111 (312)
T ss_pred eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence 34567789999988776777776664 899999999999999999999999999999865 568899999999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCC--CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-C--CeeeEE
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-N--GSCTRV 410 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~--~~~~~~ 410 (567)
+|+++|.+||+++.|+.|-||.++. .-.++..+..|...|..+.|+|.. .|+++++.|++|++|+-. . -.++..
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 9999999999999999999999984 335678899999999999999984 477799999999999877 2 356777
Q ss_pred EeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 411 FKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 411 ~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
+.++ +-++.|++.|.++++++.|++|+||-..+.- -..|...+..+.|. ...|++++.| .|++|.-....
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCC
Confidence 7664 5678899999999999999999999866321 12277899999998 4578888888 99999876431
Q ss_pred CC---ce-EEEeecCCCceEEEEEeCC-CCeEEEEEcCCeEEEEECC
Q 008393 487 EG---EC-VHELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 487 ~~---~~-i~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~I~iwd~~ 528 (567)
.. .. ...-..|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 11 2234567889999999994 6789999999999999874
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=238.01 Aligned_cols=276 Identities=21% Similarity=0.359 Sum_probs=232.9
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC---CeEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~---~~l~s~s~dg~I~iwd~~~~ 361 (567)
.|.+.|.++... ++++++|++||.+++||. .|+...++.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 578888888887 779999999999999997 589999999999999998885433 36999999999999999864
Q ss_pred Cce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-------------------------eeeEEEeC
Q 008393 362 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 413 (567)
Q Consensus 362 ~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-------------------------~~~~~~~~ 413 (567)
... +....||...|.++...+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 332 2334599999999999999775 559999999999993221 11122233
Q ss_pred ---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 414 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 414 ---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
.+..+.|.+ ...++.++.|.+|+.||++++..+.++.+ ...++++.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 456677887 68899999999999999999999888875 4678999999999999999999 99999999987777
Q ss_pred eEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCc--EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 490 CVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
....+.+|.+.|.++.|+|... .|++++.|+++++||++..+ .+.+.+|...|.++.|. ++.+|++||.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 8889999999999999999765 46678889999999999876 45889999999999996 56799999999999997
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=240.72 Aligned_cols=243 Identities=33% Similarity=0.603 Sum_probs=217.0
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+..|...+.++.|++++++|++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.|+.|++||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 34556788899999999999999999999999999999998889999999999999999999888998888999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+ ......+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. .+..+.|++++..+++++.++.
T Consensus 123 ~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 123 ET-GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred CC-cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 86 666777888999999999999854 665777799999999998887777654 5678899999989999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|.+||+++++.+..+..|...+.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|+
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEE
Confidence 9999999999998888899999999999999999988866 9999999765 56667778888999999999999999
Q ss_pred EEEcCCeEEEEE
Q 008393 515 VIGCYQSLELWN 526 (567)
Q Consensus 515 ~~~~dg~I~iwd 526 (567)
+++.|+.|++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=245.76 Aligned_cols=278 Identities=18% Similarity=0.339 Sum_probs=236.5
Q ss_pred eeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456789999999999999987 7899999999999999999999999999999999999987 6899999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEE-CC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA-AE 433 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-~d 433 (567)
++. .+++++.+ ...+..|+-+.. ...++|||. .|-|||......+..+.- .+.++.|+|....+++++ .|
T Consensus 136 ~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 986 35666654 455677776655 346778865 599999998888888764 457889999887776666 79
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+.|.+||++...++..+.- ...-+.|||+|.+-.++++++| .++.||++... ..+....+|.+.+.++.|+|.|.-
T Consensus 210 rsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 9999999999988766542 3445789999988889999999 99999998653 567778889999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEec--cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|+.|.+|+||....+....+. .-...|.|+.||-|.+||++|++|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999988765332 3345699999999999999999999999996
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=227.26 Aligned_cols=275 Identities=21% Similarity=0.380 Sum_probs=229.6
Q ss_pred EEEEEcC-CCCeEEEEe-------CCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcC
Q 008393 291 ICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 291 ~~l~~s~-dg~~lasg~-------~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~ 359 (567)
+++.||| -.++||++. ..|++.|.++...+-+..+. .-.+.+..++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4788998 233444432 36889999986554444433 35677999999986 4588999999999999988
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE---EEEecCCC-EEEEEECCCe
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLG-RYLAAAAENV 435 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~-~l~~~~~dg~ 435 (567)
.+..++..++.|...|.++.|++..++.+++++.|++|++|+...+..+.+|+++..+ ..|+|... .++.++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 8788999999999999999999988888889999999999999999999999987554 56898764 5566777999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-Ce
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PS 512 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~ 512 (567)
+++||++..-....+..|...|.++.|+. +.++|++|+.| .|++||+++.+ ..+.++.+|+-.|..+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 99999988655555889999999999998 67799999999 99999998754 5688899999999999999976 46
Q ss_pred EEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEec-CCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iWd 567 (567)
|++++.|-+++|||...+... +...|...|..+.|++ +..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 777888899999999865543 6678999999999987 567999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=222.76 Aligned_cols=254 Identities=23% Similarity=0.332 Sum_probs=221.0
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
.|.++|+|+..+| ..++++.+|...|..++.+.|...|++|+.|..|.+||+++|+..+.+.+|.+.|+.++|+.+.
T Consensus 37 sdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees 113 (307)
T KOG0316|consen 37 SDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES 113 (307)
T ss_pred CCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc
Confidence 3445666666666 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEEcCCC-CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eCCeeEEE
Q 008393 342 PRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR 419 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~~~ 419 (567)
..+++|+.|.++++||.++. .+++..+......|.++... ++.|++|+.||+++.||++.|.....+ ..++++++
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs 190 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVS 190 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEE
Confidence 99999999999999999863 35778888888999999997 456779999999999999999877654 45789999
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCe--eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|+++++..++++.++++++.|-.+++.+..+++|...- ...++......+++|++| .|++||+... ..+..+..
T Consensus 191 ~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~ 267 (307)
T KOG0316|consen 191 FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSV 267 (307)
T ss_pred ecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeecc
Confidence 99999999999999999999999999999999997653 345677788899999999 9999999765 67777777
Q ss_pred CCCc-eEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 497 NGNK-FHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 497 ~~~~-i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
+... +..+.++|.-..++++...+ +.+|
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred CCceeEEeeecccCccceeEecCCc-eece
Confidence 7766 89999999888888776654 3444
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=253.86 Aligned_cols=246 Identities=18% Similarity=0.312 Sum_probs=217.7
Q ss_pred CeeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 319 LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++...+.+++++.+|..+|.+++|+.+|..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 456788999999999999999 8889999999999999999988999999999999999999999998777 99999999
Q ss_pred EEEECCCCeeeEEEeC--CeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 398 RYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
++||+++|+++..|.. ...++.|+|++ +.+++|+.|+.|..||+++++.+..+..|-+.|..|.|-++|+.+++.++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999998875 46889999999 78889999999999999999999999999999999999999999999999
Q ss_pred C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----Eecccc--CCeeEEEE
Q 008393 475 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALAV 547 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~~ 547 (567)
| .++||+.+..-..+.+.. .......+|..+|+++++++-+.|+.|.+|.+...-.. .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9 999999987643333333 23445678899999999999999999999997654333 566775 45667899
Q ss_pred ecCCCEEEEEECCCcEEEcC
Q 008393 548 STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 548 spdg~~l~s~s~Dg~I~iWd 567 (567)
||||++|++|+.||.+.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=237.15 Aligned_cols=275 Identities=24% Similarity=0.395 Sum_probs=243.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...|.++...+....+++|+.|..+.++|...++.+.++++|...|+.+.|+++...+++++.|..|+||.... .....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888878999999999999999999999999999999999999999999999999999999999987 44566
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-----eeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
....|..+|+.+..+|.|++++ +++.|+++.+.|++++.++...... .++..|+|||-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999998777 8899999999999999988776553 678899999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~d 519 (567)
..+..+..|.+|+++|..|+|+.+|.||+++++| .|++||++..+. +.++... ...+.++.|...|.+|+.++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999999999999999999999999999999999 799999987643 3333322 2368999999999999999888
Q ss_pred CeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 520 QSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 520 g~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
=.|++++-.+.... .+..|.+..+++.|.....++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 78888876555433 566788899999999999999999999999886
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=240.11 Aligned_cols=259 Identities=20% Similarity=0.273 Sum_probs=219.4
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCe
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPR 343 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~ 343 (567)
+..+|.+.....++..+++.+|..+|..+.||||.++|++++.|..+.+||+.+|.....+. +|...+.+++|.|||..
T Consensus 247 Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 247 TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 34455555555578899999999999999999999999999999999999999999888776 45788999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEE
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRF 420 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~ 420 (567)
+++|+.|+.|..||++. ..+....+- ...|.+++..+||++++ +.+.|..|++++.++......+ ..+++.+++
T Consensus 327 ~V~Gs~dr~i~~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~i 403 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSI 403 (519)
T ss_pred eEecCCCCcEEEecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEE
Confidence 99999999999999985 333444433 25699999999999888 4557999999999987766443 457889999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCC--eeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
+.++..+++.-.+..|.+||++..+.+.++.||+.. |..-||-- +..++++|++| .|+||+..++ +.+.++.+
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsG 480 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSG 480 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecC
Confidence 999999999999999999999999999999998754 44456654 55899999999 9999999877 88999999
Q ss_pred CCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCC
Q 008393 497 NGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~ 529 (567)
|...+.+++|+|... .+++++.||+|+||....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999765 577788899999998764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=258.36 Aligned_cols=242 Identities=23% Similarity=0.346 Sum_probs=200.8
Q ss_pred eeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------------------------------
Q 008393 281 NSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------------------------------------- 318 (567)
Q Consensus 281 ~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----------------------------------------- 318 (567)
..+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4556 8999999999999999999999999999997643
Q ss_pred -------------------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEE
Q 008393 319 -------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 379 (567)
Q Consensus 319 -------------------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 379 (567)
.+++..+.+|.+.|.+|.|+.++ +|++++.|.+|++|++.. ..++..|. |...|+|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence 01223456799999999999765 999999999999999997 78888887 999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC--C--
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-- 453 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h-- 453 (567)
|+|..+++|++|+-||.|+||++...+.+.. ++.-++.++|.|+|...++|+.+|.+++|+....+....+.- |
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 9999999999999999999999999887755 346789999999999999999999999999998876654421 1
Q ss_pred ----CCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC--ceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 454 ----TKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 454 ----~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
...|+.+.|.|.. ..|++.+.| .|+|||.+.. ..+..+++... .-....|+.||++|++++.|..|+||
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 2379999999743 346666777 9999999655 45555554332 23456899999999999999999999
Q ss_pred ECC
Q 008393 526 NMS 528 (567)
Q Consensus 526 d~~ 528 (567)
++.
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 973
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=239.20 Aligned_cols=276 Identities=19% Similarity=0.289 Sum_probs=239.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-.+.|.+++|+|...+=++....-.+.||+..+...+.++......|.++.|..||++|+.|...|.|+|||+.+ ...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356899999999654333333357899999999888888888899999999999999999999999999999655 6678
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-EEEEEECCCeEEEEEC
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAENVVSILDA 441 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~~dg~I~i~d~ 441 (567)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.+ .+.+..|+|..+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 899999999999999999999999999999999999999987555555 456777888766 5677888999999999
Q ss_pred CCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 442 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 442 ~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
+.. ..+..+. |..+|..+.+-|.|.+|++++...|+|||+.+|. +.+..+..|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988 5555655 9999999999999999999999999999998663 45555566889999999999999999999999
Q ss_pred eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 521 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 521 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.|++||+.+.+.+.-....++|-+++.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999888888876778899999999999999999999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=249.66 Aligned_cols=248 Identities=15% Similarity=0.184 Sum_probs=200.1
Q ss_pred EeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCc-------eeEEeccCCCcEE
Q 008393 305 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 376 (567)
Q Consensus 305 g~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~-------~~~~~~~h~~~V~ 376 (567)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||+|+|||+.+... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888999999999999999997 78999999999999999976332 3446788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 454 (567)
+++|+|++..++++++.|+.|++||+++++.+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988766553 457889999999999999999999999999999999999998
Q ss_pred CCeeEE-----EEcCCCCEEEEEeCC-----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 455 KPIDSV-----CWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 455 ~~V~~l-----~~sp~g~~l~s~s~d-----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
+.+.+. .|++++.+|++++.+ .|+|||++..........+......+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 345888888887755 4999999864332333333333344444444556888899999999999
Q ss_pred EECCCCcEEEe--ccccCCeeEEEEecCCC
Q 008393 525 WNMSENKTMTL--TAHEGLIAALAVSTETG 552 (567)
Q Consensus 525 wd~~~~~~~~~--~~h~~~V~~l~~spdg~ 552 (567)
|++..+....+ ..+..++.+++|.|+..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEccccc
Confidence 99988765433 34667889999999653
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=255.71 Aligned_cols=268 Identities=27% Similarity=0.472 Sum_probs=236.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~-l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
.|...|.|..|. ..++++++.|.+|.+||..++..+.. +.+|.+.|++++|...+.+|++|+.|.++++||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788888888 55899999999999999999999988 999999999999998788999999999999999887 89
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCeEEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
+...+.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.++. .++.+. ++.+++++.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999999999874 367688999999999999999999988543 444444 89999999999999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+.++++++.+.+|...|.++.+... .++++|+.| +|++||+++.. +|+..+.+|...+..+. ..+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLL--LRDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCcccccccc--cccceeEecccc
Confidence 9999999999999999999988765 899999999 99999998654 78999999988885444 456789999999
Q ss_pred CeEEEEECCCCcEE-Eecc-ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|++||..+++++ .+.+ |.+.|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 56889988876 46788999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=234.60 Aligned_cols=275 Identities=24% Similarity=0.415 Sum_probs=235.5
Q ss_pred EEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeeeeec
Q 008393 208 MMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR 284 (567)
Q Consensus 208 ~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~ 284 (567)
..|+|||.+++++ +-+.+|+..+|.++.++.-...+ .|-
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------------------------------------~fM 260 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------------------------------------NFM 260 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------------------------------------cee
Confidence 4789999988774 33489999999877665533222 234
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
-|..+|.|+.|+.|...||+|+.||.|+||.+.+|.+++.+. .|+..|+|+.|+.|+..+++++.|.+++|.-+.+ ++
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK 339 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GK 339 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-ch
Confidence 577899999999999999999999999999999999999998 8999999999999999999999999999999998 88
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-----eeEEEEecC-CCEEEEEECCCeEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPH-LGRYLAAAAENVVS 437 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~dg~I~ 437 (567)
+++.+++|...|+...|.++|.+++ +++.||+|++|+.++.+|+.+|+.. +..+...|. -..++++...++|+
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 9999999999999999999998776 9999999999999999999998753 344555554 45688888899999
Q ss_pred EEECCCCeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 438 ILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 438 i~d~~~~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
|.++.. ..+..+.. ..+...+.+++|.|.++++.++| .++.|.+.+| ..-+.+..|+..+..++-+|..+.|
T Consensus 419 imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 419 IMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLL 494 (508)
T ss_pred EEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchh
Confidence 999864 44555543 23456678899999999999999 9999999887 6777888899999999999999999
Q ss_pred EEEEcCCeEEEEE
Q 008393 514 LVIGCYQSLELWN 526 (567)
Q Consensus 514 ~~~~~dg~I~iwd 526 (567)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999994
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=244.73 Aligned_cols=265 Identities=22% Similarity=0.429 Sum_probs=228.1
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc-C
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-H 371 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-h 371 (567)
+.|+ ..+.||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+ .+.++.+.+ |
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSH 259 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCc
Confidence 5677 344677664 56899999999987776666689999999999999999999999999999987 566777777 9
Q ss_pred CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE
Q 008393 372 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
...|.+++|. ..++.+|+.|+.|..+|++..+.... ....+..+.|++++.+++.++.|+.+.|||....++.
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 34677999999999999998765443 3445777889999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEcC-CCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc--CCe
Q 008393 448 LSLQGHTKPIDSVCWDP-SGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQS 521 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp-~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~ 521 (567)
..+..|...|.+++|+| ...+||+|+ .| .|++||..++ ..+..+. .+..|..+.|++..+-|+++.. ++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 99999999999999999 566888876 56 8999999887 4444433 4778999999999988887654 468
Q ss_pred EEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 522 LELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 522 I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999987776 7889999999999999999999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-27 Score=265.33 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=199.4
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
...|.+++|++ ++.+||+++.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.+ +..
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 46799999987 478999999999999999999999999999999999999997 788999999999999999987 566
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
+..+..+ ..|.++.|.+....++++|+.||.|++||+++.. .+..+. ..+..+.|. ++..+++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 6666644 6799999976555677799999999999998765 344443 356778886 678899999999999999
Q ss_pred CCC------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce--------E--EEeecCCCceEE
Q 008393 441 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 503 (567)
Q Consensus 441 ~~~------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~--------i--~~~~~~~~~i~~ 503 (567)
++. ...+..+.+|...+.+++|++++.+|++|+.| .|++|+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 974 35778899999999999999999999999999 999999865421100 0 011234556999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=244.83 Aligned_cols=262 Identities=16% Similarity=0.231 Sum_probs=205.4
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----------eee---eeecccCccEEEEEECC-CCCeEEEEeCCCcE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----------KSK---TNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 353 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----------~~~---~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I 353 (567)
..|....+++|+..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44555566667666666666666666664433 222 24678999999999999 88899999999999
Q ss_pred EEEEcCCCC------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCC
Q 008393 354 RVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL 424 (567)
Q Consensus 354 ~iwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~ 424 (567)
+|||+.+.+ ..+..+.+|...|.+++|+|++..++++++.|+.|+|||+++++.+..+.+ .+.+++|++++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997632 356788999999999999998777888999999999999999988877764 47889999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEe----CC-eEEEEeCCCCCCCceEEEeec-C
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC-N 497 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s----~d-~I~iwd~~~~~~~~~i~~~~~-~ 497 (567)
..+++++.|+.|++||+++++.+..+.+|... +..+.|.+++..|++++ .| .|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999988765 44678899888777654 35 899999986543 3333322 2
Q ss_pred CCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCC
Q 008393 498 GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTET 551 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg 551 (567)
...+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34456668999999999888 599999999999887632 2455678888888753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=222.98 Aligned_cols=249 Identities=19% Similarity=0.282 Sum_probs=222.9
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
=+.+|.+|.+.|+...++.+....|+++.|-+-+|||.-+|..+..+. |...|.+++|+.|.++|++|+.++.++|||+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 467899999999999999999999999999999999999999998886 8889999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCeE
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
+.+..+...+.+|.+.|..+.|+.....+| +...|++||+||.++++.+..+ +.+++.+.++++ +.+++.+..+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecCcee
Confidence 998888899999999999999998766555 7789999999999999998875 467889999998 667777888999
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
.+||..+...++.++. ...|.+..++|+...+++|++| .++.||..++.+..+. .++|.++|.|+.|+|+|...++
T Consensus 208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred EEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeec
Confidence 9999999988887763 4678999999999999999999 9999999998543331 4889999999999999999999
Q ss_pred EEcCCeEEEEECCCCcEE
Q 008393 516 IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~ 533 (567)
|+.||+|+||-+.-++..
T Consensus 285 GSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCceEEEEEecCCCch
Confidence 999999999998766654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=253.78 Aligned_cols=278 Identities=20% Similarity=0.330 Sum_probs=234.2
Q ss_pred cCCCCeEEEEEcCCCCeEEEEe--CCCcEEEEeCCC------------CeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~--~dg~I~vwd~~~------------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
.+...|.+++.+|||..+|||| .|+.++||+.+. .+.+.+...|.+.|+|+.|++||.+||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455699999999999999999 899999998652 23456677899999999999999999999999
Q ss_pred CcEEEEEcCC------C-----------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 351 KTVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 351 g~I~iwd~~~------~-----------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
+.|.||+... . .+.+..+.+|...|..++|+|++. ++++++.|++|.||+..+.++++++++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 1 125678889999999999999865 677999999999999999999888876
Q ss_pred C---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC------CCeeEEEEcCCCCEEEEEeC----C-eEEE
Q 008393 414 G---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRV 479 (567)
Q Consensus 414 ~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~----d-~I~i 479 (567)
+ +..+.|.|-|.++++-+.|++|+||.+.+..+.+.+..+. ..+..+.|+|||.+|++... . ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 5 5678899999999999999999999988887777776543 35778999999999998752 2 6888
Q ss_pred EeCCCCCCCceEEEeecCCCceEEEEEeCC-------------CC----eEEEEEcCCeEEEEECCCCcEE--EeccccC
Q 008393 480 WTVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTM--TLTAHEG 540 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~~~~~~i~~~~~sp~-------------~~----~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~ 540 (567)
.+-.+. +.-..+-+|..++.+++|+|. .. .+++|+.|++|.||.....+.+ ...-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 887544 667788999999999999882 11 5788899999999999776665 3334567
Q ss_pred CeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 541 LIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 541 ~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|..++|+|||..|+.|+.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=218.47 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=221.3
Q ss_pred cCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCC-Ceee-eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~-~~~~-~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.-.+.|.+++||| ...+++.++.||+|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 556677899999999999986 3333 445679999999999999999999999999999999984
Q ss_pred CceeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.+..+..|.++|.++.|-+... .+|++|+.|.+|++||.+....+..+.-+..+-+..-....++++..+..|.+|+
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 4577788999999999976543 4778999999999999999999998888777777777778899999999999999
Q ss_pred CCCCeEEEEe-c-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC---------CceEEEEEeC
Q 008393 441 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 508 (567)
Q Consensus 441 ~~~~~~~~~~-~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~---------~~i~~~~~sp 508 (567)
++.+...... . .-+-.++||+...|....+.|+-. .+.|..+..+.. +.-..+++|. ..|.+++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 9876432221 1 123468899988888877888877 888888876533 3444555554 2477889999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
....|+++|.||++.+||-.....+ ....|..+|++.+|+.+|.++|.+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999998877655 668899999999999999988754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=224.22 Aligned_cols=287 Identities=17% Similarity=0.323 Sum_probs=242.7
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.|..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 35677889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC------C-----------------------------C----CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 356 WDAD------N-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 356 wd~~------~-----------------------------~----~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
|... . . ..++..+.+|.+.|.+..|...|..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 9521 0 0 123567789999999999998877666 9999999
Q ss_pred EEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEE
Q 008393 397 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~ 472 (567)
-.+||+++++.+..+.++. +.++-+|....+++.+.|.+.++||.+.. ..+..|.+|...|+++.|..+. .+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 9999999999999998864 45567888788888888999999999864 5677899999999999998765 57889
Q ss_pred eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE-----eccccCCeeEEE
Q 008393 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 546 (567)
Q Consensus 473 s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~-----~~~h~~~V~~l~ 546 (567)
++| +|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||+....... -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998764 3344443 35678888999888877777778899999999877653 358999999999
Q ss_pred EecCCC--EEEEEECCCcEEEcC
Q 008393 547 VSTETG--YVASASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~--~l~s~s~Dg~I~iWd 567 (567)
|..+-. -|++||.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 975442 478999999988885
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=246.51 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=231.5
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCe------eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC-ceeEEec
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM 369 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~ 369 (567)
|.+++|++||.||.|++|++.... ....+..|.++|++++...+++.|++++.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 466789999999999999986322 367788999999999999999999999999999999998754 6788999
Q ss_pred cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee--eEEE------------eCCeeEEEEecCCCEEEEEECCCe
Q 008393 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------------KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~--~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.|...|.|+++....+.++++|+-|+.|.+||++++.. +..+ +..+..++.++.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999444477999999999999999998733 2222 234677888888888888999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|++||.++.+.+..+.+|...|.++..++||..+++++.| +|++||+... .|+.++..|...++++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999999999999999 9999999644 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 515 VIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+.|+.|+.-|+++. +...+.....+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999984 3445556667788888876555556778899999884
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=223.68 Aligned_cols=261 Identities=21% Similarity=0.339 Sum_probs=221.3
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCC---CeEEEEeCCCcEEEEeCCCCeee----eeecccCcc
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSL 331 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg---~~lasg~~dg~I~vwd~~~~~~~----~~l~~h~~~ 331 (567)
.+..|+..|+|+..- +....+.||+++|.+++|--.. ..|++++.|.++++|.++.++.+ ..-.+|...
T Consensus 120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~ 195 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS 195 (423)
T ss_pred EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence 455678889998754 5788999999999988875433 36999999999999998876543 333499999
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCC------------------------CceeEEeccCCCcEEEEEEcCCCCeE
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDL 387 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~p~~~~l 387 (567)
|-+|...+++..+++|+.|.+|+||+..+. +.++.++.+|..+|.++.|++. ..
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v 273 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TV 273 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--Cc
Confidence 999999999999999999999999993311 1346678899999999999973 46
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECCCC---eEEEEecCCCCCeeEEEE
Q 008393 388 ICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCW 462 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~ 462 (567)
+++++.|.+|+.||+.++.++..+.+ ...++.+++....+++++.|..|++||.+++ .....|.+|.+.|.++.|
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence 77999999999999999999887765 4688889999999999999999999999986 456789999999999999
Q ss_pred cCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 463 DPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 463 sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
+|.. ..|++++.| ++++||+++.. ..+..+.+|...|.++.|.. +.+|++||.|.+|+|+...
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9954 578889999 99999998752 47889999999999999975 4569999999999998653
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=245.98 Aligned_cols=259 Identities=25% Similarity=0.451 Sum_probs=225.1
Q ss_pred CCCCCCCccceeccCCccceeeee-eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
.+..+.++++|+..++ ..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++.+...+.+|...|.++..
T Consensus 223 ~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI 299 (537)
T ss_pred ecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence 4455667788888777 45555 9999999999999988889999999999999999999999999999999999987
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~ 417 (567)
.+ .++++|+.|.+|++|++.+ +..+..+.+|.+.|.++.++ ..++++|+.|+.|++||+.++++++.+.++...
T Consensus 300 ~~--~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 300 DP--FLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred cC--ceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 64 4788899999999999997 78899999999999999998 336779999999999999999999999987544
Q ss_pred EE-EecCC-CEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 418 MR-FQPHL-GRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 418 ~~-~~~~~-~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
+. +..+. ..++.++.|+.|++||+++. +++..+.+|..-|..+.+ .+++|++++.| .|++||..++ .+++.
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~ 448 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRT 448 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeee
Confidence 33 24444 89999999999999999999 999999999998876654 47899999999 9999999777 78888
Q ss_pred eec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 494 LSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 494 ~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
+.+ +...+..+++. ...+++++.++.+++||++.+...
T Consensus 449 ~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 449 LEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 887 56778777776 567999999999999999998876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=226.94 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=203.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCcee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
...|+++.|-.||++||+|+..|.|+|||..+...+..+.+|..+|..+.|+|.+ ..|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 5578899999999999999999999999988877888999999999999999965 4778888999999999998 5556
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
..+.+|++.|.|.+|+|-.+++++||+.||.|++||++.. ..+..+.. ++..+.+-|.+..++ .+..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia-sAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA-SAGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE-EcCCCeEEEEEec
Confidence 6889999999999999999999999999999999999987 56666654 678888988865554 4556799999999
Q ss_pred CC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 443 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 443 ~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
+| +.+..+..|...|+|+++..++..|++++-| .|++||+.+. +.++.+. ..++|.+|+++|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEecccc
Confidence 65 5555556699999999999999999999999 9999997554 6666665 467899999999999999999999
Q ss_pred eEEEEECCC
Q 008393 521 SLELWNMSE 529 (567)
Q Consensus 521 ~I~iwd~~~ 529 (567)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887775443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=248.20 Aligned_cols=250 Identities=22% Similarity=0.390 Sum_probs=215.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------------------CeeeeeecccCccEEEEEECC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------------------~~~~~~l~~h~~~V~~i~fsp 339 (567)
+.+.....|.+.|+|+.|++||++||+|++|+.|.||+... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45677889999999999999999999999999999998762 246778899999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC------
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 413 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~------ 413 (567)
++.+|++++.|++|.||+..+. ..+..+.+|.+.|..+.|.|-|. +|++-+.|++|+||++.+-.+.+.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999994 88999999999999999999987 566999999999999888777776654
Q ss_pred ---CeeEEEEecCCCEEEEEEC----CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-----CC------------EE
Q 008393 414 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GE------------LL 469 (567)
Q Consensus 414 ---~~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-----g~------------~l 469 (567)
....+.|+|+|.+|++... ...+.|.+-.+++.-..|-+|.+++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 3456789999999988765 348999999999999999999999999999871 11 68
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
|+|+.| .|.||.....+..-.++. .....|..++|+|||..|++++.||+|.++.+++.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 889999 999999865433333333 346779999999999999999999999999987654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=213.79 Aligned_cols=264 Identities=18% Similarity=0.306 Sum_probs=219.3
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 351 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg 351 (567)
.+.+..+..+..|.++|+|+|.+ +.++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.+.-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 45667788899999999999987 77999999999999999999999999999999999999998765 899999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 429 (567)
.|.+|+... ..++.++++|.+.|+.|+.+|.++ |.++.+.|+.++.||+-+|+.-.. ++.....+.|+|.|.++++
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999999997 788999999999999999999976 666888899999999999886554 4455666999999888877
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE--
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF-- 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~-- 506 (567)
+.. +.|-+|.+++......+.. ...+.|+.|. ++..|++|.++ .|++||..+. .+...+..|...|..+.+
T Consensus 186 ~~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGR-NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eec-cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEe
Confidence 665 5678888887665554442 2557777775 45677788888 9999999764 788899999999999884
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCc-----EEEeccccCCeeEEEE
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAV 547 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~ 547 (567)
.|++.+|++++.||.|++||++... .+....-...++|+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 4678899999999999999998762 3333334556667665
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-27 Score=213.86 Aligned_cols=283 Identities=20% Similarity=0.290 Sum_probs=214.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eeec--ccCccEEEEEECCCCCeEEEE-eCCCcEE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRLATS-SFDKTVR 354 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l~--~h~~~V~~i~fsp~~~~l~s~-s~dg~I~ 354 (567)
+..|++|.+.|+|++|+.||++||+++.|+.|+||+++.+... +.++ -..+.-+.++|.||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999999875332 1111 122356789999998765554 4556799
Q ss_pred EEEcCCCC---ce--------eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEE
Q 008393 355 VWDADNPG---YS--------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 420 (567)
Q Consensus 355 iwd~~~~~---~~--------~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~ 420 (567)
+|.+.... .. ......|.-.|..+-.... ..+|++++.|..|.+|+++ |..+..+.. .....+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99875311 11 1122345666777766655 4577799999999999999 777776654 3456789
Q ss_pred ecCCCEEEEEECCCeEEEEECC---CC-----eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC----CC
Q 008393 421 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 487 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~---~~-----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~----~~ 487 (567)
+|+|..+++++..-.|++|++- .| ..+..+++|...|..++|+++...+++.+.| +++|||..-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 3456789999999999999999999999999 9999998632 22
Q ss_pred CceEEEe----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 488 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 488 ~~~i~~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
++.+.+. ...+..-..+.++|.|..|++. ....|.+|..++++.+ ....|...|.+++|+++|++++|+| |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 3333322 2223444588999999965554 4468999999998877 3458999999999999999999998 45
Q ss_pred cEEEc
Q 008393 562 FVKLW 566 (567)
Q Consensus 562 ~I~iW 566 (567)
.++++
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 66654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-25 Score=195.70 Aligned_cols=288 Identities=20% Similarity=0.291 Sum_probs=235.5
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------C---------eeeeeecccCccEEEEEECC
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L---------KSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------~---------~~~~~l~~h~~~V~~i~fsp 339 (567)
..|+.+..+. .+..|.+++|+|.|.+.|+|+..++++|-.... + ...+.-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3455565554 467899999999999999999999988864321 1 11123457999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCc----eeEEeccCCCcEEEEEEcCC---CCeEEEEEe-CCCcEEEEECCCCeeeEEE
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~~p~---~~~li~s~~-~dg~I~iwd~~~~~~~~~~ 411 (567)
+|.+|++|+.|++|++.-+..... .-..+.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987654221 12456679999999999643 445665554 4788888899999988888
Q ss_pred eCCeeEE--EEecCCCEEEEEECCCeEEEEECCCCeEEEEecC--C-----CCCeeEEEEcCCCCEEEEEeCC-eEEEEe
Q 008393 412 KGGTAQM--RFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWT 481 (567)
Q Consensus 412 ~~~~~~~--~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h-----~~~V~~l~~sp~g~~l~s~s~d-~I~iwd 481 (567)
.++...+ .++.++-.++.++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|-.| ...+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 8765443 2566677888888999999999999988887753 2 3579999999999999999999 999999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-----EEEeccccCCeeEEEEecCCCEEEE
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~spdg~~l~s 556 (567)
++.+ ..+..+..|...|.++.|+|...|+++++.|..|++-|+...- .+.+..|...+..+.|+|..--+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9877 7888999999999999999999999999999999999997542 3366789999999999999988999
Q ss_pred EECCCcEEEc
Q 008393 557 ASHDKFVKLW 566 (567)
Q Consensus 557 ~s~Dg~I~iW 566 (567)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-25 Score=234.80 Aligned_cols=224 Identities=17% Similarity=0.264 Sum_probs=181.8
Q ss_pred eeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCccEEEEEECCCC-CeEEEEeCCC
Q 008393 281 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 351 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg 351 (567)
..+.+|.+.|++++|+| ++++||+|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999765 3567889999999999999985 6999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----eEEEEecCCCEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRY 427 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~l 427 (567)
+|+|||+.+ +..+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.++. ..+.|.++++.+
T Consensus 149 tVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999997 667788889999999999999976 56699999999999999999888776542 356788888888
Q ss_pred EEEEC----CCeEEEEECCCCe-EEEEecCC-CCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEEeec-CC
Q 008393 428 LAAAA----ENVVSILDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NG 498 (567)
Q Consensus 428 ~~~~~----dg~I~i~d~~~~~-~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~~~~-~~ 498 (567)
++++. |+.|++||+++.. ++.....+ ...+....|++++++|++++. | .|++||+.++. .+..... ..
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 87653 6899999998764 33333333 345666779999999998874 6 99999998763 3333322 34
Q ss_pred CceEEEEEeCC
Q 008393 499 NKFHSCVFHPT 509 (567)
Q Consensus 499 ~~i~~~~~sp~ 509 (567)
.++..++|.|.
T Consensus 304 ~~~~g~~~~pk 314 (493)
T PTZ00421 304 EPHKGLCMMPK 314 (493)
T ss_pred CCCcceEeccc
Confidence 45677788775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=235.52 Aligned_cols=337 Identities=19% Similarity=0.294 Sum_probs=271.4
Q ss_pred CCceeeeCCCcchhhcccccccCCCCCCceEEeeccC-----CCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEE
Q 008393 221 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD-----DTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHF 295 (567)
Q Consensus 221 ~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 295 (567)
+..++|+.+++..+..+..+... +.+..... ..+..++.+.++++..+ +.+.+|+.-.+.|++++|
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~------IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSR------ITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSF 252 (910)
T ss_pred CcEEEEEeccCcEEEEecccccc------eeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEe
Confidence 34699999999888877776632 22222211 24556777888888777 567778766799999999
Q ss_pred cCCCC-eEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC---ceeEEecc
Q 008393 296 SSDGK-LLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMG 370 (567)
Q Consensus 296 s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~ 370 (567)
..||. ++|+|+..|.+.+||++..+.+..+. .|.+.|....|.+....|++++.|..+++|=.+++. ..++...|
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 99997 55677777999999999988887776 899999999999999999999999999999776422 35666778
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-----------------------------------------------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN----------------------------------------------- 403 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~----------------------------------------------- 403 (567)
|..+..||.|.-...+.+.+.+.|++++.+++.
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 999999999985555566677777777666542
Q ss_pred ------------------CCee-eEEE--------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe---cCC
Q 008393 404 ------------------NGSC-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGH 453 (567)
Q Consensus 404 ------------------~~~~-~~~~--------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h 453 (567)
+... ...+ .....+++.++.|+..+.|...|.|.+|++.+|-....+ ..|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 1111 0001 123567888999999999999999999999999988888 479
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------------------------------------CceEEEe
Q 008393 454 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------------------------------GECVHEL 494 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~--------------------------------------~~~i~~~ 494 (567)
..+|+.++.+.-++.+++++.+ .+++||+..... .+.++.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f 572 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF 572 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence 9999999999999999999888 999999975320 0123356
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC-CcEEEc
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 566 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW 566 (567)
.+|.+.|+.++|+|||++|++++.|++|++||+.++..+.......++.++.|+|+|.+|||+..| .-|++|
T Consensus 573 ~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 688999999999999999999999999999999999999877888999999999999999999988 669998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=195.96 Aligned_cols=247 Identities=19% Similarity=0.338 Sum_probs=208.3
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee-----eeeecccCccEEEEEECCC----CCeEEEEeC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPS----MPRLATSSF 349 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~-----~~~l~~h~~~V~~i~fsp~----~~~l~s~s~ 349 (567)
..+.-+.|.+.|+|.+|+|+|.+||+|+.|++|++.-++...+ ...+.-|.+.|..++|..+ +.+|++++.
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 3455678999999999999999999999999999987654322 2346679999999999653 446777654
Q ss_pred -CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----------CeeEE
Q 008393 350 -DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQM 418 (567)
Q Consensus 350 -dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----------~~~~~ 418 (567)
|..|++-|... +..+..+.+|++.|.++--. + ..++++|+.|.+|++||++-..++.++.. .+..+
T Consensus 161 gdc~iy~tdc~~-g~~~~a~sghtghilalysw-n-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 161 GDCKIYITDCGR-GQGFHALSGHTGHILALYSW-N-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CcceEEEeecCC-CCcceeecCCcccEEEEEEe-c-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 77788888887 77889999999999887433 2 45888999999999999999998887642 35678
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC-CCCceEEEeec
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSC 496 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~-~~~~~i~~~~~ 496 (567)
+..|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+++++.| .|++-|+... .....+.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999 9999999643 12234556677
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
|...+..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88999999999999999999999999999764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=210.01 Aligned_cols=239 Identities=23% Similarity=0.401 Sum_probs=208.0
Q ss_pred eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -....+|.+.|-.++|+|....++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999863221 1345689999999999999999999999999999999
Q ss_pred CCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-CeEE
Q 008393 402 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-DSVR 478 (567)
Q Consensus 402 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d~I~ 478 (567)
++.++++..+. ++...+.|+|++++++++..|..|.++|.++.+.....+ ....+..++|+.++.+++.... ++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999987765 466778999999999999999999999999988776655 4466788999877776555444 5899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
|...... +.+..+..|.....|+.|+|+|+++++|+.|..+.+||+.+.-+. .+..+.-+|+.|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9888644 788899999999999999999999999999999999999988776 677889999999999999999999
Q ss_pred ECCCcEEE
Q 008393 558 SHDKFVKL 565 (567)
Q Consensus 558 s~Dg~I~i 565 (567)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=226.26 Aligned_cols=258 Identities=22% Similarity=0.368 Sum_probs=223.7
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
+++.|..+++|++.-.. .+.+.+|.|..+.|+.+.|.++++++++++.|+.+++|+++..+...+|.+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 56667778899887554 67888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--Cee
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTA 416 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~ 416 (567)
.....+++|+.|.+|++||+.. .++.+++. ....+..|+.. ...+++|..|++|++||+++..+...... .++
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt 345 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT 345 (459)
T ss_pred ccccceeeccccchhhhhhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCccee
Confidence 8877799999999999999997 66666554 34556666665 34567999999999999999999888764 578
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC----CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i 491 (567)
.+..++++..+++++.|..+.++|+++.+....+... ...++.++|+|++.|+++|+.| .|+||++.++ ++.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLE 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEE
Confidence 8999999999999999999999999999888877642 2347889999999999999999 9999999887 555
Q ss_pred EEeecCCC--ceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 492 HELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 492 ~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
..+..... .|++++|+|.|.++++++.++.+.+|
T Consensus 423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 55555444 49999999999999999999999998
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=209.25 Aligned_cols=246 Identities=21% Similarity=0.342 Sum_probs=203.9
Q ss_pred eeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCC-CCeeeeeecccCccEEEEEECCC-CCeEEEEeCCCcEE
Q 008393 278 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVR 354 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~-~~~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~ 354 (567)
.+...+.- .+.+..++|++.. +.+++++.||+++|||+. ..+++..+++|...|.++.|++. ...+++++.|++|+
T Consensus 52 ~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 52 QECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred EEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 34444432 5678899999965 577888999999999964 34678899999999999999985 45688889999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCE-EEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~-l~~~ 430 (567)
+|+... ...+.++.+|...|....|+|....++++++.|+++++||++.......+.. .+.++.|+..... ++++
T Consensus 131 LW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 131 LWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred eecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 999987 7788999999999999999999999999999999999999987543333443 4566778776554 5566
Q ss_pred ECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 431 AAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 431 ~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
+.|+.|++||++.. .++..+.+|.-.|+.++|+|. ..+|++++.| +++|||..... .++.+...|..-+..+.|+
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccccc
Confidence 67999999999985 678889999999999999995 5699999999 99999997442 4666677788888888988
Q ss_pred C-CCCeEEEEEcCCeEEEEEC
Q 008393 508 P-TYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 508 p-~~~~l~~~~~dg~I~iwd~ 527 (567)
+ +..+++.++.|+.++||+-
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 8 5568999999999999984
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=233.28 Aligned_cols=347 Identities=13% Similarity=0.193 Sum_probs=266.3
Q ss_pred CCCceeeeCCCcchhhcccccccC-------------------CCCCCceEEeeccCC----CCCCCCCccceeccCCcc
Q 008393 220 SPSNQLWDDKDLELRADMDRLVED-------------------GSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 220 ~~~~~~Wd~~~g~~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
.+.++|++..+.+....+.+.-.- +.+.|.+.+.+.+.. -...|....+||+.+-..
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 345688888877666666544332 223333333332211 122345667899998877
Q ss_pred ceeeeeeccCCCCeEEEEEcCC-----------CCeEEEEeCCCcEEEEeCCCCeeeeee--------------------
Q 008393 277 FKEANSVRASTSKVICCHFSSD-----------GKLLATGGHDKKAVLWHTDTLKSKTNL-------------------- 325 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~d-----------g~~lasg~~dg~I~vwd~~~~~~~~~l-------------------- 325 (567)
......+--|...|+.+.--|. ...++|++.|++|++|+++.+..-..+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 7778888899999999887662 135889999999999998752111100
Q ss_pred -----------------cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC--CCe
Q 008393 326 -----------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 386 (567)
Q Consensus 326 -----------------~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~ 386 (567)
-+....|++++.+|++.+||+|..-|+++||++.+ ......+..|...|.|+.|+.. +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 01345699999999999999999999999999997 5566778899999999999743 456
Q ss_pred EEEEEeCCCcEEEEECCCC-eeeEEEeC---CeeEEEEecCC--CEEEEEECCCeEEEEECCCCeEEEEecC-----CCC
Q 008393 387 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTK 455 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~-~~~~~~~~---~~~~~~~~~~~--~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~~ 455 (567)
|+++++.|..|.|||+... ..+.++.+ .++.+.|...+ .+++.++.|..|.+--..+......+.. ...
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999999754 34455544 46778887776 5678888888876654432221222222 235
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 533 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~- 533 (567)
.++.++..|..+++++++.| .|+|||+.+++..+.++--..+++....+...|.|.||++.+.|.+|.+||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999998666666666667788889999999999999999999999999999999
Q ss_pred EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 534 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.+|...|+.+.|.+|.+.|++.+.||.|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=232.06 Aligned_cols=237 Identities=19% Similarity=0.312 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|+......+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999998 99999999998 6689999999999999999866555
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC---CCeEEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSIL 439 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~---dg~I~i~ 439 (567)
.++.+|...|..+.|++++. .+++|+.|+.+.|||......+..+. ..+..++|+|....+++.+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 56889999999999999976 55699999999999997766665554 46778899998766666443 8999999
Q ss_pred ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe-C-C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E-D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 440 d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~-d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
|..+++.+..+. ....|.+|.|++..+-|+++. . + .|.||++.+. ..+..+.+|...|..++++|||..|++|
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999887776 457899999999886555543 2 2 7999999774 7889999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 008393 517 GCYQSLELWNMSEN 530 (567)
Q Consensus 517 ~~dg~I~iwd~~~~ 530 (567)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=240.06 Aligned_cols=244 Identities=19% Similarity=0.335 Sum_probs=196.2
Q ss_pred eeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC--------------------------------C-----
Q 008393 320 KSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--------------------------------P----- 361 (567)
Q Consensus 320 ~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~--------------------------------~----- 361 (567)
.....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344455 8999999999999999999999999999997654 0
Q ss_pred ----------------------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeE
Q 008393 362 ----------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQ 417 (567)
Q Consensus 362 ----------------------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~ 417 (567)
.+++..+.||.+.|.+|.|+.+ ++|++++-|.+|++|++...+|++.|.. .++|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 0124556799999999999976 3666999999999999999999998864 6899
Q ss_pred EEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 418 MRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 418 ~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
++|+|.+ ++|+.|+-|+.|+||++...+.+.-...+ .-|+++||.|||++.+.|+.+ .+++|+....+..... .+.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~-~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF-HIR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee-eEe
Confidence 9999955 56778888999999999998888666544 789999999999999999998 9999998754221111 111
Q ss_pred cC------CCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcEE-EeccccC--CeeEEEEecCCCEEEEEECCCcEEE
Q 008393 496 CN------GNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 496 ~~------~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+ ...|+.+.|.|... .|++.+.|..|+|||.++...+ .+.++.. .-....|+.||++|+++++|..|+|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 11 33799999997544 6999999999999999877766 4554332 2345578899999999999999999
Q ss_pred cC
Q 008393 566 WK 567 (567)
Q Consensus 566 Wd 567 (567)
|+
T Consensus 573 W~ 574 (712)
T KOG0283|consen 573 WK 574 (712)
T ss_pred Ee
Confidence 96
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=206.90 Aligned_cols=269 Identities=18% Similarity=0.254 Sum_probs=216.9
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-...|..+.|+|.+..|++++.||.+++||+........++ |..++.+++|.+ ...+++|+.||.|+++|+.+...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc--
Confidence 36789999999999999999999999999999875555554 889999999987 55899999999999999997433
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
..+..|...|.||.+.+..+ .+++|+.|++|++||.+.......+..+....+.+-.++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999997755 55599999999999999877777776666667778889999999999999999999876
Q ss_pred EEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC-CCCceEEEeecCC---------CceEEEEEeCCCCe
Q 008393 446 CRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 512 (567)
Q Consensus 446 ~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~-~~~~~i~~~~~~~---------~~i~~~~~sp~~~~ 512 (567)
....... -+-.+.||++.|++.=+++++-+ .|.+=.+... ........+++|. .+|++++|+|-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 5443322 34578999999987767777766 6655444433 1112333444442 35899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEEC
Q 008393 513 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
|++|+.||.|.+||+...+.+ .+......|.+++|+.+|..||+|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999988877 56666778999999999999999874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=206.19 Aligned_cols=256 Identities=21% Similarity=0.388 Sum_probs=206.9
Q ss_pred EEEEeCCCcEEEEeCC------------CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 302 LATGGHDKKAVLWHTD------------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 302 lasg~~dg~I~vwd~~------------~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
|++|++...|.-+++. +....+.+..|.+.|++++.+ +.++|+|+.|.+|+|||+.. ...+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhccee
Confidence 5666666666666553 223466778999999999985 78999999999999999998 56677778
Q ss_pred cCCCcEEEEEEcCCCC--eEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCC
Q 008393 370 GHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 444 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~--~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 444 (567)
.|.+.|+++.|.+.-. +|+ +|+.||.|.+|+....+++..++. .++.++++|.+...++.+.|+.+++||+-++
T Consensus 81 ~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 8999999999988753 566 999999999999999998888765 4788899999999999999999999999998
Q ss_pred eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
+..+.+.-. ..-+.+.|+|.|.+++.+..+.|-+|.+.+- ..+.++.. ...+.++.|- ++.+|++|+.++.|.+
T Consensus 160 r~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIEN-PKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhhc-cccceeeeec-CCceEEEecCCceEEE
Confidence 776665532 2334599999999999999999999998764 22222221 2334454444 5667999999999999
Q ss_pred EECCCCcEE-EeccccCCeeEEEE--ecCCCEEEEEECCCcEEEcC
Q 008393 525 WNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 525 wd~~~~~~~-~~~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iWd 567 (567)
||....... .+.+|...|.++.+ .|++.||+|++.||.|+|||
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 999987766 78899999999985 46788999999999999997
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=216.60 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=221.1
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee----ee-------------e-cccCccEEEEEECCCC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TN-------------L-EEHSSLITDVRFSPSM 341 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~----~~-------------l-~~h~~~V~~i~fsp~~ 341 (567)
+..+..|.-+|.||++++|++++++++.+++|.-|++.+++.. .. - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6778899999999999999999999999999999999877633 11 0 2688899999999999
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 418 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~ 418 (567)
+||++|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....++ +++.|+.|++|++.....+.++-++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 778888999999999999987655555 8999999999999988877776554 4455
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee--
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 495 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-- 495 (567)
.....+..+-+++.|.++++|++ ..+....+.+|.+.+-|++|-.+ ..+++|+++ .|.+|++-..+ .+....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC---ceeEeecc
Confidence 55555566666778999999999 44445578889999999999755 567889988 99999997652 222221
Q ss_pred ----------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc----EEEeccccCCeeEEEEecCCCEEEEE
Q 008393 496 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 496 ----------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
.+..+|++++..|....+++|+.+|.|++|-+.++. .+.-....+.|++|+|+++|++|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112378999999999999999999999999999883 22333467899999999999966554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=227.63 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=185.8
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCe--------eeeeecccCc
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSS 330 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~--------~~~~l~~h~~ 330 (567)
++.++.+++|+..+. ..+..+++|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 445566778876554 467789999999999999996 7899999999999999997542 3446789999
Q ss_pred cEEEEEECCCCCe-EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 331 LITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 331 ~V~~i~fsp~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
.|.+++|+|++.. |++++.|++|+|||+.+ +..+..+. |...|.+++|+++|. ++++++.|+.|+|||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 9999999999875 57899999999999998 44445554 667899999999987 45578889999999999999888
Q ss_pred EEeCCee---E-----EEEecCCCEEEEEECCC----eEEEEECCC-CeEEEEec--CCCCCeeEEEEcCCCCEEEEEeC
Q 008393 410 VFKGGTA---Q-----MRFQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQ--GHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 410 ~~~~~~~---~-----~~~~~~~~~l~~~~~dg----~I~i~d~~~-~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+.++.. . ..|+++++.+++++.++ .|+|||+++ .+++..+. .+.+.+......++|.++++|+.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 8776432 1 12457888999988764 799999995 45555443 23334434444556889999988
Q ss_pred C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 475 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
| .|++|++..+. ...+..+. +..++.+++|.|..
T Consensus 284 D~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 8 99999997652 22333333 45677888999864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=200.18 Aligned_cols=247 Identities=19% Similarity=0.326 Sum_probs=205.1
Q ss_pred CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe-CCCc
Q 008393 318 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGE 396 (567)
Q Consensus 318 ~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-~dg~ 396 (567)
..+..+.+......|.++.|+++|.+|++++.|.+++|||..+ +..++++..+...|..++|......++.+.. .|.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3455566666778899999999999999999999999999998 7788888888888999999777666664432 3889
Q ss_pred EEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe
Q 008393 397 IRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|+..++.+.+.++.|.++ +..++.+|-+..++.++.|++|++||++..++...+.....+ .++|+|.|-++|++.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 999999999999999986 577889999999999999999999999988877766544344 478999999999999
Q ss_pred CC-eEEEEeCCCCCC-CceEEEee-cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCC---eeEEE
Q 008393 474 ED-SVRVWTVGSGSE-GECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALA 546 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~-~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~---V~~l~ 546 (567)
.. .|++||+++... +.....+. .....++.+.|+|||++|+.+...+.+++.|.-+|... .+..+... --..+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 88 999999997633 22222222 44677899999999999999999999999999999876 45444432 25678
Q ss_pred EecCCCEEEEEECCCcEEEcC
Q 008393 547 VSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+||+++|++|+.||+|.+|+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=204.47 Aligned_cols=275 Identities=21% Similarity=0.313 Sum_probs=221.5
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
..||.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++|+++|+.|+|++.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998 55666665
Q ss_pred cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-------CCeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
...+|+...|+|...+.++++--+..-.+-++..++....-+ ....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999877776666555555555655432211111 112334588999999999999999999999
Q ss_pred CCeEEEEecCCC-CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC------CCCceEEEee--cCCCceEEEEEeCCCCe
Q 008393 443 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELS--CNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 443 ~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~------~~~~~i~~~~--~~~~~i~~~~~sp~~~~ 512 (567)
+.+++..++-.. ..|..|.|+..|..|+.-+.| .||.|++..- ...+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999888765 789999999999999999999 9999998631 1112112221 12345678999999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-Eecccc-CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~d-g~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++++.. ..+|||.-..|..+ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988754 48999999999988 455555 567889999998888877 678999993
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=212.40 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=204.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 377 (567)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999999888876644 6789999999976 5667889999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCC-eEEEEECCCCeEEEEecCCC
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~ 454 (567)
++|+|+++.+++++..|+.|++||+.+.+.+..+.. ....+.|+|++..++++..++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999988877777899999999999888877763 357789999999988888764 577889998877665543 2
Q ss_pred CCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEeecC-------CCceEEEEEeCCCCeEEEE-EcCCeEEE
Q 008393 455 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 524 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~~~~-------~~~i~~~~~sp~~~~l~~~-~~dg~I~i 524 (567)
..+.+++|++++.+|+.++ .+ .|++||++++ +.+..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3457899999999886554 45 9999999876 333333211 1123467899999987665 45678999
Q ss_pred EECCCCcEEEeccccCCeeEEEEecCCCEEEEE-ECCCcEEEcC
Q 008393 525 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567 (567)
Q Consensus 525 wd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iWd 567 (567)
||+.+++......+...+.+++|+|+|++|+++ +.+|.|++||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999988877544556689999999999999876 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=223.44 Aligned_cols=273 Identities=18% Similarity=0.310 Sum_probs=227.5
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eeecccCccEEE-EEECC-CCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITD-VRFSP-SMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l~~h~~~V~~-i~fsp-~~~~l~s~s~dg~ 352 (567)
++..+.+.+|...|..+++.++. .+++++.||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45667899999999998877655 8899999999999997655443 456778888887 88886 4446999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|.+|.... ..++.++++|...|.++....++. +++|+.|.++++|-+.. +...+.+ .+..+..-|.. .+++
T Consensus 83 i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEe
Confidence 99999997 788999999999999999877754 55999999999997654 3333444 45566777775 9999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
|+.|..|++|.- ++.+.+|.+|.+.|+.+++-+++. |++++.| .|++|++ ++ .++.++.+|...++++....
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecC
Confidence 999999999987 778889999999999999998765 5567777 9999999 34 79999999999999999888
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEEEeccccC-CeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++..+++++.|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.||||
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 88899999999999999987 5554445555 799999888886 6678899999998
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=218.10 Aligned_cols=275 Identities=19% Similarity=0.301 Sum_probs=232.1
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC---Ceeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~---~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.|.+-|.++.+|...++++||+ .|.|+|||+.. ...+..|. .....|+++.+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 6888888999999999999997 68899999963 23344444 245679999999999999999999999999998
Q ss_pred CCCceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 360 NPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 360 ~~~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+...++ .+....-..+.++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..++.++++|.+|.+++-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7544332 2333345577899999965 566888899999999999999999886 5689999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|+.||+++++.+.... ....|.++.++|++.+|+.|-++ .|.|..... ...+.+..|+..|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk----p~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK----PEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC----ccceeecccccEEEEEEecccCceee
Confidence 9999999987665433 45789999999999999999998 888877653 34556777899999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 515 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+.+.|+.+..|...-|..+.-......|.++.++.|.+||+||+.|..-.||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988887666777899999999999999999999877766
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=225.65 Aligned_cols=305 Identities=16% Similarity=0.229 Sum_probs=249.9
Q ss_pred CCCCCCCccceeccCCccc---eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEE
Q 008393 259 TDPRDAGGRGMDVSQGFSF---KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLIT 333 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~---~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~ 333 (567)
++++|+.+++|+......+ ..+..+..|...|..++...+|+.|++++.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 5678899999998765543 246789999999999999999999999999999999999876 67889999999999
Q ss_pred EEEE-CCCCCeEEEEeCCCcEEEEEcCCCCc---------eeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 334 DVRF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 334 ~i~f-sp~~~~l~s~s~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
|+++ .++...+|+|+.|+.|.+||+.+... ....+. ++...|++++.++.| .+|++|+..+.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence 9999 78888999999999999999986321 122233 888999999999987 57779999999999999
Q ss_pred CCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEE
Q 008393 403 NNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR 478 (567)
Q Consensus 403 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~ 478 (567)
++++.+..+.++ +..+..+.+|.++++++.||+|++||+...+++.++..|+..|+++..+|+-..+++|+.| .|.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 999988887765 5677899999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE------------------------
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT------------------------ 534 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~------------------------ 534 (567)
.=|+++......+. ..+.++..+..+...+-+.+++.|+.|+-|..+-...+.
T Consensus 281 ~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 281 RTDLRNPAKSTLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred ecccCCchhheEee---cCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 99998753322222 345667777777666667888999999999654321110
Q ss_pred -eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 535 -LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 535 -~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.......|...++-.|.++++|-..+|.+.+||
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 011112344445556788999999999999997
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=195.66 Aligned_cols=231 Identities=21% Similarity=0.299 Sum_probs=207.4
Q ss_pred eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 324 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
.+.+|..+++.|.|+.+|.+|++++.|.++.||-..+ ++.+-++.+|.+.|+|++...+.+.++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999999877 788999999999999999998876655 99999999999999
Q ss_pred CCeeeEEEeC--CeeEEEEecCCCEEEEEECC-----CeEEEEECC-------CCeEEEEecCCCCCeeEEEEcCCCCEE
Q 008393 404 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-----NVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 404 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----g~I~i~d~~-------~~~~~~~~~~h~~~V~~l~~sp~g~~l 469 (567)
+|+++..++. .+..+.|+.+++.+++...+ +.|.++|++ ..++...+..+...++.+-|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988875 56778899998888887763 689999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
++|.++ .|.+||++++. +.+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.......+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 456666778889999999999999999999999999999999998777788899999999
Q ss_pred cCCCEEEEEE
Q 008393 549 TETGYVASAS 558 (567)
Q Consensus 549 pdg~~l~s~s 558 (567)
|....++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777665
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=213.63 Aligned_cols=246 Identities=18% Similarity=0.380 Sum_probs=204.4
Q ss_pred eccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC----------eeeeeecccCccEEEEEECCCCC-eEEEEeCC
Q 008393 283 VRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFD 350 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~----------~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~d 350 (567)
.-.|.+.|+.+.+-|.. .++|+++..+.|.|||..+. .+-.+|.+|...-+.+.|++... +|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999955 67788889999999998642 22337889999889999998544 89999999
Q ss_pred CcEEEEEcCCCCc------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCC
Q 008393 351 KTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 424 (567)
Q Consensus 351 g~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (567)
+.|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||++++.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------------ 261 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------------ 261 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------------
Confidence 9999999975333 3567889999999999999999999999999999999988531
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
.++.....+|...|+|++|+| ++.+||+|+.| +|++||+++.. .+++.+.+|...|.
T Consensus 262 -------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 262 -------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVF 320 (422)
T ss_pred -------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceE
Confidence 122235567999999999999 66789999989 99999999764 58999999999999
Q ss_pred EEEEeCCC-CeEEEEEcCCeEEEEECCCC-c--------------EEEeccccCCeeEEEEecCCCE-EEEEECCCcEEE
Q 008393 503 SCVFHPTY-PSLLVIGCYQSLELWNMSEN-K--------------TMTLTAHEGLIAALAVSTETGY-VASASHDKFVKL 565 (567)
Q Consensus 503 ~~~~sp~~-~~l~~~~~dg~I~iwd~~~~-~--------------~~~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~i 565 (567)
.+.|+|.. ..|++++.|+.+.|||+..- + .+.-.+|...|..+.|+|+..+ |+++++|+.+.|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999976 46677788999999999642 1 1355689999999999998875 778899999999
Q ss_pred cC
Q 008393 566 WK 567 (567)
Q Consensus 566 Wd 567 (567)
|+
T Consensus 401 W~ 402 (422)
T KOG0264|consen 401 WQ 402 (422)
T ss_pred ee
Confidence 96
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=198.50 Aligned_cols=229 Identities=17% Similarity=0.300 Sum_probs=189.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~ 358 (567)
+....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+||+.|++|+.||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 556789999999999999999999999999999999998 5677888999999999988666 8999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE-----EEeCCeeEEEEecCCCEEEEEECC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
+. ..++.++. ....|++++... .+++.+..++.|.+|+++++.... .++-.+.+++...+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55555554 567788887753 366678889999999998764332 244567888888888888999999
Q ss_pred CeEEEEECCCC--eEEEEecCCCC---------CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 434 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 434 g~I~i~d~~~~--~~~~~~~~h~~---------~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
|.+.|..+..+ +.-+.|+.|.. .|++|+|+|....|++++.| ++.+||-... ..+.....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988776 55566666652 47889999988889998888 9999998554 5677778889999
Q ss_pred EEEEEeCCCCeEEEEEc
Q 008393 502 HSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~ 518 (567)
++|.|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999997776543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=222.30 Aligned_cols=244 Identities=24% Similarity=0.337 Sum_probs=212.4
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC---CCCeEEEEeCCCcEEEEEcCC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp---~~~~l~s~s~dg~I~iwd~~~ 360 (567)
-.....|.|++++|+|++||+|...|.|+||++.+.+....++.|...|.|+.|+. ..++||+++.|..|.|||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567799999999999999999999999999999999999999999999999986 356899999999999999998
Q ss_pred CCceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEE--------eCCeeEEEEecCCCEEEEEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~ 431 (567)
+-.++.++.+|...|+++.|.-.| +.-+++|+.|..|.+--.........| +.....+...|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 777889999999999999997665 334459999988765443322211222 23456788999999999999
Q ss_pred CCCeEEEEECCCCeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 432 AENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.|..|+|||+..++..+.|++ |++....+..+|.|.||++.+.| ++.++|+.++ +|+..+.+|...|+.+.|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeec
Confidence 999999999999999999986 66777889999999999999999 9999999887 8999999999999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+|.++|++.+.||.|.||.+...
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccchhheeecCCceEEEEECchh
Confidence 99999999999999999988653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=207.69 Aligned_cols=263 Identities=19% Similarity=0.243 Sum_probs=225.5
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
+++.|...-++|...+ ..+..|+||+..|+.+.|+++...+++++.|..|+||..........+..|..+|+.+..+
T Consensus 236 TGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred ecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeec
Confidence 4556656666665554 5678899999999999999999999999999999999999888888899999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 413 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--- 413 (567)
|.|.||++++.||+..+.|+++ +..+..... ..-.+++.+|+||| .+|.+|..|+.|+|||+.+...+..|.+
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred cCCcEEEEecCCceEEEEEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999999999999999999998 444443332 23458999999997 4777999999999999999998888765
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceE
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i 491 (567)
++..+.|+.+|-++++++.|+.|++||++..+...++... ...|.+++|+..|.+|+.++.+ .|++++-.+ +...++
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~ 469 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEI 469 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceee
Confidence 5788899999999999999999999999998877766543 3479999999999999999888 888887554 456788
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
..+..|.+..+++.|.....++++++.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888888888999999999999999999999888864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-23 Score=200.87 Aligned_cols=296 Identities=19% Similarity=0.309 Sum_probs=234.6
Q ss_pred ccceeccCCccceeeeeeccCC-CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE
Q 008393 266 GRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
..-|+...+.-++....+..+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll 302 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL 302 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe
Confidence 4568877777777777777654 5699999999995 5689999999999999988888888999999999999999555
Q ss_pred EEEeCCCcEEEEEcCCCC----------ce-----------------------------eEEeccCCCcEEEEEEcCCCC
Q 008393 345 ATSSFDKTVRVWDADNPG----------YS-----------------------------LRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~----------~~-----------------------------~~~~~~h~~~V~~l~~~p~~~ 385 (567)
+|+.|..|..||-.-.. .. .....+|......++.+|+.+
T Consensus 303 -SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 303 -SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred -ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 49999999999832100 00 012236888899999999966
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~ 465 (567)
.+ ++|+.|+.+++|+-......+.+..+..++.|+|.+ .++++...|...+.|.++...+..-.. ..++++++|+|+
T Consensus 382 q~-~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 382 QL-LTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD 458 (626)
T ss_pred he-eeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence 54 599999999999944444556677889999999998 999999999999999999766655554 889999999999
Q ss_pred CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-------------
Q 008393 466 GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK------------- 531 (567)
Q Consensus 466 g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~------------- 531 (567)
|.+||.|+.| .|+||.+..... +....-..+..+|+.+.|++|+++|.+-+.|-.|..|.....+
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATY 537 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeee
Confidence 9999999999 999999975432 3333334455899999999999999999999999999433221
Q ss_pred ---------------------------------------------------EEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 532 ---------------------------------------------------TMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 532 ---------------------------------------------------~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
...+.+|.+.|++++|..+...|++.+.|
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D 617 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKD 617 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCC
Confidence 12455678888888888777777777788
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
.+|..|+
T Consensus 618 ~Si~qW~ 624 (626)
T KOG2106|consen 618 TSIMQWR 624 (626)
T ss_pred ceEEEEE
Confidence 8888885
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=214.72 Aligned_cols=359 Identities=16% Similarity=0.231 Sum_probs=257.4
Q ss_pred CCCcCeEEEecCCCccccCCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCC---CCCCCCCccceeccCC-cc-
Q 008393 202 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS- 276 (567)
Q Consensus 202 ~~~~~~~~~~~dg~~~~~~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~d~~~~~~~~~~~-~~- 276 (567)
..++-+.+...+....+++..+.++-.+-|..+.+...... ..|...+.-++ ....+....+|+...+ .+
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~-----a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHG-----AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEecccc-----ceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 44566677777888877777776666655532222221111 11111111111 1123345677887764 22
Q ss_pred ceeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 277 FKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
......++.....|+++. +|. -+.++.|+.+|.+.+|++.+++.++++.++...|+++.=+|--..++.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 112222333233366653 453 35778999999999999999999999999999999999999888999999999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 430 (567)
|+++.. .+.+..++...+.|++++|.-||+.++++++..|.+.+||++..+.+.... +.+....|.+....++++
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 777888874469999999999999999999999999999999988776654 345666677776777777
Q ss_pred ECCCeEEEE--ECCCC--eEEEEecCC-----------------------------------------------------
Q 008393 431 AAENVVSIL--DAETQ--ACRLSLQGH----------------------------------------------------- 453 (567)
Q Consensus 431 ~~dg~I~i~--d~~~~--~~~~~~~~h----------------------------------------------------- 453 (567)
+.|+.+++| |...+ +.++.-.||
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 777655444 41111 000000111
Q ss_pred -------------------------------------------------------C------CCeeEEEEcCCCCEEEEE
Q 008393 454 -------------------------------------------------------T------KPIDSVCWDPSGELLASV 472 (567)
Q Consensus 454 -------------------------------------------------------~------~~V~~l~~sp~g~~l~s~ 472 (567)
. ..+++++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 1 346677778888888887
Q ss_pred eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--------------------
Q 008393 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------------------- 531 (567)
Q Consensus 473 s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------------------- 531 (567)
... .|.+|++.+|-.......-..|..+|+.++...-++.+++++.+|-+.+||+.+..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 776 88888888774333333336789999999999999999999999999999987754
Q ss_pred ---------------------E-EEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 ---------------------T-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ---------------------~-~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. ..+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 14567999999999999999999999999999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=209.81 Aligned_cols=261 Identities=17% Similarity=0.256 Sum_probs=220.6
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
.++.|+.+++|+.... .+...++.|.+.|..|+++. ..+++++.|++|+.|.++- .++.++.+. ..+..|.-+
T Consensus 84 SGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccc
Confidence 5778999999999876 67889999999999999988 6888999999999998865 455555543 346677777
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCee
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTA 416 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~ 416 (567)
..+..++||+.+ |.|||... ..++..+.-....|.++.|+|....+|++|+.|+.|.+||++.+..++.. +...+
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 777889999876 99999986 66778887778889999999999999999999999999999999988654 45678
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.++|+|..-.++++..|..++.||++.. +++....+|.+.|.++.|+|.|+-+++|+.| +|+||.++.+......++-
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999998788888899999999999985 6778889999999999999999999999999 9999999876443332221
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
. -..|.++.|+-|.+++++|+.|+.|++|.....+
T Consensus 314 R--Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 R--MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred h--hheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 1 2348899999999999999999999999876543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=196.29 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=203.2
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEEEc
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd~ 358 (567)
..|.+.|..+...--|++|||++.|++|+|+.+.+. +.+.+|.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 478999999999999999999999999999998753 57889999999999999965 7899999999999999999
Q ss_pred CCCCc-eeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCC------eeeEEEeCCeeEEEEecC---C---
Q 008393 359 DNPGY-SLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 424 (567)
Q Consensus 359 ~~~~~-~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~------~~~~~~~~~~~~~~~~~~---~--- 424 (567)
+++.. ....+..|...|++++|.|.+- .+|+.++.||.|.|.+.+.. +.......+++.++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87422 2345678999999999998754 35667888999999998765 223334567888888886 3
Q ss_pred --------CEEEEEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCC----CEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 425 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 425 --------~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g----~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
.+|++++.|+.|+||+...+ +...+|.+|.+.|+.++|.|.- .+||+++.| +|.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998875 4445688999999999999954 489999999 99999987433333
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
....+......+..+.|+..|+.|++++.|+.|++|.-..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 4444555667899999999999999999999999997553
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=207.41 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=233.6
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~ 361 (567)
...+.|+|+.|+|...+|++|+.|+.++||.++ +...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 446899999999999999999999999999886 3456667777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEE
Q 008393 362 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 362 ~~-~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
+. .+....++. ..+.....+++++ +|+..+..|.|.+....+++.+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 32 222333443 3566788899987 55578889999999999999987765 5678899999999999999999999
Q ss_pred EEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC-eEEEEeCCC---CCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 438 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGS---GSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~---~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+||++...+++++....+ .-+++|.+.++.|||+|+.. .|.|||..+ ...++.+..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34678888999999999998 999999754 3456777777777888999999999998
Q ss_pred EEEEEcC--CeEEEEECCCCcEE-Ee---ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCY--QSLELWNMSENKTM-TL---TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~d--g~I~iwd~~~~~~~-~~---~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+.++.. ..+++--+.....+ .+ ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8887654 58899888877666 22 23345799999999999999999999999995
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=207.49 Aligned_cols=231 Identities=23% Similarity=0.351 Sum_probs=196.9
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
++|...|.+++.++||+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++. ..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hH
Confidence 59999999999999999999999999999999999999999999999999999999888999999999999999997 66
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
.+.++.+|.+.|..|....- ..++.+|+.|+++++|++.....+.... +.+.+++|..+ ..+++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 77889999999999998766 4577678899999999995544332222 24567777665 88999999999999999
Q ss_pred CCCeEEEEecC-C-----------CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-CCceEEEeecCCCceEEEEEe
Q 008393 442 ETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 442 ~~~~~~~~~~~-h-----------~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~s 507 (567)
-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|+.++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99988877642 2 2389999999999999999999 99999998762 345555655 56789999999
Q ss_pred CCCCeEEEEEc
Q 008393 508 PTYPSLLVIGC 518 (567)
Q Consensus 508 p~~~~l~~~~~ 518 (567)
++|+.|++|..
T Consensus 435 ~sgk~ivagiG 445 (479)
T KOG0299|consen 435 NSGKRIVAGIG 445 (479)
T ss_pred cCCCEEEEecc
Confidence 99997777743
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=217.03 Aligned_cols=255 Identities=20% Similarity=0.368 Sum_probs=220.4
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEE-EEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 336 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~ 336 (567)
..++|++.++|+-. +..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|+.|.+|......+..+|++|...|.++.
T Consensus 30 s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 35678888999764 3345566778889998888 88885 555799999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 416 (567)
...++. |++|+.|.+++||.... +...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.++..
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 888876 99999999999999854 456689999999999999986 4559999999999986 778888888765
Q ss_pred EE---EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 417 QM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~---~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
++ ++-++ ..+++++.||.|++|++ +++++..+.+|...|.++....++..++++++| +++||+.. .|..
T Consensus 181 ~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q 253 (745)
T KOG0301|consen 181 CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQ 253 (745)
T ss_pred heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEE
Confidence 54 45554 78999999999999999 899999999999999999988888999999999 99999975 6778
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.+......++++.+-++|. |++|++||.|+||.....
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 8887788899999988887 999999999999977643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=199.90 Aligned_cols=247 Identities=14% Similarity=0.233 Sum_probs=206.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
..+++|-.|.+.|+++.|+|....|++|+.|++|++||+..-...+.++ .....|.+|.|+|.|.+|+.|....++++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 4678899999999999999999999999999999999998654444433 35668999999999999999999999999
Q ss_pred EEcCCCCceeEE---eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCCEE
Q 008393 356 WDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRY 427 (567)
Q Consensus 356 wd~~~~~~~~~~---~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l 427 (567)
||+.+ ..+... -..|.+.|+++.+++.++ +.++++.||.|++||--+++|+.++.. .+....|..++.++
T Consensus 243 Ydv~T-~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 243 YDVNT-YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred Eeccc-eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 99998 443332 236899999999999976 566999999999999999999988753 46677899999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEecCCC--C---CeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 428 LAAAAENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~h~--~---~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
++.+.|..+++|++.+++++..+.+-. + --+...|+....|++.-.+. .+.-||.++...... .-.+|.+.
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a 398 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGA 398 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCC
Confidence 999999999999999999999887641 1 12345688888888887766 799999988743222 23468899
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
+..+.-+|.+..+++++.|-.+++|--+
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeeeeec
Confidence 9999999999999999999999999643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=207.95 Aligned_cols=257 Identities=19% Similarity=0.215 Sum_probs=208.8
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
.+.+|.+-+...+. ..---.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 34566665543332 111236789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCC--------CCceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEe--C
Q 008393 345 ATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFK--G 413 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~--~ 413 (567)
++|+.||.|.+|.+.. .-.++..+..|.-+|+++...+.+ +..++|.+.|.++++||+..+..+..+. .
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998742 235678899999999999887652 3456699999999999999999887654 5
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCC----------------eEEEEecCCCC--CeeEEEEcCCCCEEEEEeCC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~----------------~~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d 475 (567)
.+.+++++|.+..+++|+.+|.|.+.++.+. ..+..+.+|.+ .|+|++++-||.+|++|+.|
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 6789999999999999999999999887542 34556788988 99999999999999999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEEC
Q 008393 476 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNM 527 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~ 527 (567)
.|+|||+.+. ++++++....++|+.+.+.|-.+.++.+.. ...+-+|++
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999765 788877777888999998775544444322 224444444
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=200.23 Aligned_cols=276 Identities=13% Similarity=0.087 Sum_probs=204.2
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.|..+++|+..++ +.+..+..|.. +.+++|+|+|+.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus 9 ~d~~v~~~d~~t~---~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (300)
T TIGR03866 9 KDNTISVIDTATL---EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN 83 (300)
T ss_pred CCCEEEEEECCCC---ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence 4557788888766 34555555543 6789999999976 5667889999999999988877765544 567899999
Q ss_pred CCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEEe--CCee
Q 008393 341 MPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTA 416 (567)
Q Consensus 341 ~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~~--~~~~ 416 (567)
++.++++ +.|+.|++||+.+ ...+..+. +...+.+++|+|++..++ ++..+ ..+.+||..+++....+. ....
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 9977655 5689999999987 45555554 234578899999987666 45544 467788999887765443 3456
Q ss_pred EEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEecCCC-----C--CeeEEEEcCCCCEEEEE-eCC-eEEEEeCCCCC
Q 008393 417 QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGS 486 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~-----~--~V~~l~~sp~g~~l~s~-s~d-~I~iwd~~~~~ 486 (567)
.+.|++++..+++++ .++.|.+||+++++.+..+..+. . ....++|+|++++++.+ +.+ .|.+||+.++
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~- 239 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY- 239 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 788999998887665 48999999999998776654321 1 23468899999986554 334 8999999765
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEeccccCCeeEEEEec
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 549 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 549 (567)
+.+..+. +...+.+++|+|++.+|+++. .++.|.+||+.+++.+.........+.++++|
T Consensus 240 --~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 --EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred --cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 3333332 345788999999999998874 58999999999999873334456678888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=194.17 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=199.8
Q ss_pred cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC--ceeEEeccCCCcEEEEEE-cCCCCeEEEEEeCCCcEEEEEC
Q 008393 326 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~-~p~~~~li~s~~~dg~I~iwd~ 402 (567)
..|.+.|.++...--|++|+|++.|++|+|+.+++.+ ..+.++.+|.++|..++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889998888889999999999999999999866 578899999999999999 5665678999999999999999
Q ss_pred CCCeeeEE-----EeCCeeEEEEecCC--CEEEEEECCCeEEEEECCCC---eEEEEecCCCCCeeEEEEcCC---C---
Q 008393 403 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 466 (567)
Q Consensus 403 ~~~~~~~~-----~~~~~~~~~~~~~~--~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~---g--- 466 (567)
.++...+. +...+++++|.|.+ -.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 98864433 34567888888865 45677888999999987654 333455679999999999985 5
Q ss_pred --------CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC----CeEEEEEcCCeEEEEECCCC---
Q 008393 467 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 530 (567)
Q Consensus 467 --------~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~I~iwd~~~~--- 530 (567)
+.|++|+.| .|+||+..++ ....-..+.+|...++.++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999876 334445689999999999999964 47999999999999987633
Q ss_pred -cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 531 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 531 -~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+...+......+..+.||..|++|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1123445667899999999999999999999999995
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=212.20 Aligned_cols=288 Identities=20% Similarity=0.240 Sum_probs=230.6
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 351 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg 351 (567)
.|+..+...++||++.|.|+...|.|.+||+|+.||+|+||.+.+|+++.++.- .+.|.||+|+|.+. .||++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 456667788999999999999999999999999999999999999999998873 44799999999765 344443332
Q ss_pred cEEEEE---------------------------------cCC---CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC--
Q 008393 352 TVRVWD---------------------------------ADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-- 393 (567)
Q Consensus 352 ~I~iwd---------------------------------~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-- 393 (567)
+.|-+ -.. ...-++....|...|..+.|+..|++|..++..
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 33332 211 011133444688999999999999987765543
Q ss_pred CCcEEEEECCCCeeeEE---EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEE
Q 008393 394 DGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 470 (567)
...|.|+++.......- .++.+.++.|+|...++++++ ...|+|||+...+.+.++......|..++.+|.|.-|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 35689999987665443 457788999999977777665 57899999999888888887888999999999999999
Q ss_pred EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE------CCCCc-EE---Eecccc
Q 008393 471 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN------MSENK-TM---TLTAHE 539 (567)
Q Consensus 471 s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd------~~~~~-~~---~~~~h~ 539 (567)
.++.| .+..||+.-.. +....+..|...++.++|++...++++++.||++.||- +-.+. ++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 99999 99999996442 56778888999999999999999999999999988873 22222 22 567787
Q ss_pred CC----eeEEEEecCCCEEEEEECCCcEEEc
Q 008393 540 GL----IAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 540 ~~----V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.. |..+.|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 8899999999999999999999999
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=192.24 Aligned_cols=255 Identities=20% Similarity=0.324 Sum_probs=198.1
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC----CCeeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEEE
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~----~~~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd 357 (567)
.+|.+-|.|+.|...|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 4466777889999999999965 488999999999999997
Q ss_pred cCCC--------CceeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEE
Q 008393 358 ADNP--------GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 428 (567)
Q Consensus 358 ~~~~--------~~~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (567)
-... -....++......|+++.|.|... ..+++++.||.||||+......+...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W----------------- 152 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW----------------- 152 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc-----------------
Confidence 6321 123456667788999999998643 35678899999999987654322221
Q ss_pred EEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCC---CCEEEEEeCC------eEEEEeCCCCC-CCceEEEeec
Q 008393 429 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 496 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~d------~I~iwd~~~~~-~~~~i~~~~~ 496 (567)
.+... ..+.....+..+..|+.|++. ..+||.|+.+ .++||...... ....+.++..
T Consensus 153 -----------~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 153 -----------TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 11100 000011135567788999874 4588888877 69999886553 5667888899
Q ss_pred CCCceEEEEEeCC----CCeEEEEEcCCeEEEEECCCCc--------------------EE-EeccccCCeeEEEEecCC
Q 008393 497 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 551 (567)
Q Consensus 497 ~~~~i~~~~~sp~----~~~l~~~~~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spdg 551 (567)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45788899999 9999987411 11 467899999999999999
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
..|++.|.||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-26 Score=227.48 Aligned_cols=237 Identities=27% Similarity=0.477 Sum_probs=211.6
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|...|.+|.|++...+|+.|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 35567899999999998888999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
. .+.++++.+|...+.++.|+|-+.+ +++|+.|+.+++||++...|.+
T Consensus 101 e-Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~------------------------------ 148 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSH------------------------------ 148 (825)
T ss_pred h-hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCcee------------------------------
Confidence 7 7888999999999999999999764 4688889999998887554443
Q ss_pred ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 440 d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.+.+|...|.++.|+|+|++++.+++| .++|||+..| +.+.+|..|...+..+.|+|..-.+..|+.
T Consensus 149 ---------~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 149 ---------TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ---------eecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCC
Confidence 555688889999999999999999999 9999999776 788899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECC
Q 008393 519 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 519 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
|++|++||+++.+.+ ........|.++.|+|+++.+++|..+
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999988877 444557789999999999988887654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=193.80 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=220.6
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee---cc-cCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EE-HSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l---~~-h~~~V~~i~f 337 (567)
.+....+|+..++... ...+..++.|..+.|+|.+..|+.....+.+.+|+.+.+...++. +. ....|.|++|
T Consensus 178 ~~h~lSVWdWqk~~~~---~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKL---GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred Cccccchhhchhhhcc---CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 3445568888777443 344456778999999997765555556889999999887665543 32 2367999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----------
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---------- 407 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---------- 407 (567)
.++| -++||..+|.|.||+..+ .+..+....|.+.|.+++...+|. |+ +|+.|+.|..||-.-.+.
T Consensus 255 ~eng-dviTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 255 LENG-DVITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred cCCC-CEEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcC
Confidence 9988 678999999999999987 444455559999999999998874 44 799999999999321110
Q ss_pred -eEEE---------------------e-----------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC
Q 008393 408 -TRVF---------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 408 -~~~~---------------------~-----------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 454 (567)
++++ . .+...++.+|..+.+++++.|+.+.+|+ ..+++.+.. -.
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 0110 0 1223466788889999999999999999 444444333 34
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-E
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-T 532 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-~ 532 (567)
.++.|+.|+|.| .+|.|... ...+.|.++. ..+.... ...++.++.|+|+|.+|++|+.|+.|+||.+..+. .
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 788999999999 88888877 8899998763 3343333 38899999999999999999999999999987654 3
Q ss_pred E-Eec-cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M-TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~-~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+ ... -|..+|+.+.|++|+++|.+-+-|-.|.+|+
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 3 222 2348999999999999999999999999984
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=203.31 Aligned_cols=257 Identities=17% Similarity=0.295 Sum_probs=215.8
Q ss_pred CCccceeccCCccceeeeeec--cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECC
Q 008393 264 AGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp 339 (567)
+-+++||+...-.-..+..|. ....-|.+|.+.|||+.|++|+.-.++.|||+... +....+....-.+.+++.+|
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 519 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence 346899998754433443333 23567899999999999999999999999999754 44445555556788899999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EEeCCeeE
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGTAQ 417 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~~~~~~~ 417 (567)
|.+..++++.||.|.|||+.+ ...++.|.+|.+.+.||.++++|..|. +|+-|++|+.||+++++.+. .|...+..
T Consensus 520 DakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfS 597 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFS 597 (705)
T ss_pred ccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhhee
Confidence 999999999999999999998 788999999999999999999998777 99999999999999988764 46678888
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
+.+.|.+.+++++-.++.+.+......+ .+.+.-|+..|.++.|.+.|+++++.+.| .+..|...-| ..|...+
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk- 672 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK- 672 (705)
T ss_pred cccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-
Confidence 9999999999999999999998876543 34666799999999999999999999999 8999998766 3444433
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
....|.+|.++.|+++|++|+.|....||.+
T Consensus 673 E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3567999999999999999999988888865
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=218.09 Aligned_cols=273 Identities=20% Similarity=0.369 Sum_probs=213.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecc---cCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~---h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~ 360 (567)
...+|...++-.-++.++ ...++||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 445677778887787776 346777766532 22222221 122356678864 466999999999999999986
Q ss_pred --CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-EEEEEECCC
Q 008393 361 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAEN 434 (567)
Q Consensus 361 --~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~~dg 434 (567)
..+.+..|..|...|++++|++...+++++|+.||+|++||++..+...++.+ .+..+.|+|..+ .|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34455678899999999999999999999999999999999999988877765 456788998765 456666678
Q ss_pred eEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 435 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 435 ~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+.++. ...++..+.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999975 6778899999999999999999999999999 999999976433 3333333 3578899999999887
Q ss_pred EEEEEc---CCeEEEEECCCCcEE--EeccccCCeeEEEEec-CCCEEEEEECCCcEE
Q 008393 513 LLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 564 (567)
Q Consensus 513 l~~~~~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~ 564 (567)
.++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 665543 558999999876543 7889999999999954 455788999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=187.00 Aligned_cols=281 Identities=22% Similarity=0.350 Sum_probs=216.5
Q ss_pred eeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee----------ee-----eecccCccEEEEEECC-CCCeE
Q 008393 282 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS----------KT-----NLEEHSSLITDVRFSP-SMPRL 344 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~----------~~-----~l~~h~~~V~~i~fsp-~~~~l 344 (567)
..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||+++... +. .-.+|...|..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999988 789999999999999999975431 11 1236888999999999 55588
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC--CeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEE
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 419 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~--~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~ 419 (567)
.+++.|.+++|||..+ ......|+ ..+.|++-+++|-. ..||++|..|-.|++.|+.+|.+.+.+.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999998 44444554 56778888887743 46888999999999999999999998876 577889
Q ss_pred EecCCCEEEE-EECCCeEEEEECCCC-eEEEEec--------------CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 420 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSLQ--------------GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 420 ~~~~~~~l~~-~~~dg~I~i~d~~~~-~~~~~~~--------------~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
|+|...++++ ++.||.|++||++.. .+...+. .|.+.|+.++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999888665 556999999999864 3333332 466789999999999999999998 9999999
Q ss_pred CCCCCCceEEEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE
Q 008393 483 GSGSEGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
.+|.....-..-..+ ...+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+=....++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 887532211111111 11121 22 334444444555689999999988877 677898899999999988889999
Q ss_pred ECCCcEEEc
Q 008393 558 SHDKFVKLW 566 (567)
Q Consensus 558 s~Dg~I~iW 566 (567)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=203.77 Aligned_cols=235 Identities=17% Similarity=0.266 Sum_probs=190.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee------------cccCccEEEEEECCCCC-eEEEEeCCCcE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL------------EEHSSLITDVRFSPSMP-RLATSSFDKTV 353 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l------------~~h~~~V~~i~fsp~~~-~l~s~s~dg~I 353 (567)
+..|.++.|++.|..|++.+....++|+|-+........ ++|...++|.+|+|+.+ .++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 446889999999999988888899999998766555433 47999999999999765 79999999999
Q ss_pred EEEEcCCCCceeEEec-----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE------EeC--CeeEEEE
Q 008393 354 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKG--GTAQMRF 420 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~------~~~--~~~~~~~ 420 (567)
+|||+.+....+..++ +..-.++.++|+++++. |++|..||.|.+|+......... +.. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999997655444443 34457899999999875 77899999999999865432211 222 6899999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCC-eEEEEecCC--CCCeeEEEEcCCCCEEEEEeC-------CeEEEEeCCCCCCCce
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 490 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~-------d~I~iwd~~~~~~~~~ 490 (567)
++++++|++-+.|+.+++||++.. +++....+- ..+-+.++|+|+.++|++|+. +.+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999985 555555542 335678999999999999863 15899998665 67
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
+..+......|..|.|+|.-+.|++++.||.+++|
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999886
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=210.81 Aligned_cols=274 Identities=15% Similarity=0.238 Sum_probs=216.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
+|+..-+.++|.++|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.+ +.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-GE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-CC
Confidence 78889999999999999999999999999998765 5555555578888888764 44999999999999999987 44
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.-..+.....++.+++|+.+|+ +++.|+.|-.|++.+..+....+.+. +++.++.|+|.+..+++.+.||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4445556678899999999876 55589999999999999887666654 5789999999999999999999999999
Q ss_pred CCCCeEEEEecCC--------CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 441 AETQACRLSLQGH--------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 441 ~~~~~~~~~~~~h--------~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
+.++.+..++.+- ...+..++|+|+|..|+....| .|++|+...+.....+ ....+...+..+.|+|+|.
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-cccccccceEEEEEcCCCc
Confidence 9999887766541 3446678999996555555555 9999999877432222 2223344599999999999
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 512 SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
||++++.+|.|.|||..+... ......|.+++|.|+.+-|-.-..-|...+|
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999999999999999998332 3344679999999998866554445544443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=208.32 Aligned_cols=274 Identities=23% Similarity=0.314 Sum_probs=208.7
Q ss_pred EEEEcC---CCCeEEEEeCCCcEEEEeCCCCeee------eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 292 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKSK------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 292 ~l~~s~---dg~~lasg~~dg~I~vwd~~~~~~~------~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
++.|++ ...+||.+..||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+.. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 456655 2358899999999999998754333 44557999999999999777999999999999999997 5
Q ss_pred ceeEE--eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE----------EEe------------------
Q 008393 363 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----------VFK------------------ 412 (567)
Q Consensus 363 ~~~~~--~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~----------~~~------------------ 412 (567)
.++.. +.+|.+.|.+++|.+.+..+|++|+.||.|.|||++...... .++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 55544 889999999999999999999999999999999987533100 000
Q ss_pred --CCeeE---EEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEe--------cCC---CCCeeEEEEcCCCCEEEEEeCC
Q 008393 413 --GGTAQ---MRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 413 --~~~~~---~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~--------~~h---~~~V~~l~~sp~g~~l~s~s~d 475 (567)
..+.. +.+..|...|++++. |+.|++||+++....... ..| ...+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 01122 446667788888877 999999999986544332 223 2357788888888887777777
Q ss_pred -eEEEEeCCCCCCCceEEEeecCCCc--eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecC
Q 008393 476 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 550 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 550 (567)
.|++|++.+... ..+..+.++... ...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999986432 233333333222 223357899999999999999999999877644 67899999999999874
Q ss_pred C-CEEEEEECCCcEEEcC
Q 008393 551 T-GYVASASHDKFVKLWK 567 (567)
Q Consensus 551 g-~~l~s~s~Dg~I~iWd 567 (567)
. .-+++|++|..++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3477889999999996
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=196.81 Aligned_cols=263 Identities=16% Similarity=0.226 Sum_probs=201.9
Q ss_pred CCccceeccCCccceeeeeeccCC-CCeEE-EEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRAST-SKVIC-CHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~-l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
....+||..+|- ....+++.. ..-.+ -+. .++|++++.. ...|.+|.+..........--.+.|.+++-+|+
T Consensus 18 ~~~~~~dl~TGt---~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGT---SLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCc---eeEEecCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 346788888873 333444331 11111 111 2356666654 457889988765544433345677999999999
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 420 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 420 (567)
|.+|+.|+..|.|++|.+.+ +..+..+.+|-..|+||.|+.||..+| +|+.||.|.+|++..
T Consensus 93 G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~ii-TgskDg~V~vW~l~~---------------- 154 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHII-TGSKDGAVLVWLLTD---------------- 154 (476)
T ss_pred ceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEE-ecCCCccEEEEEEEe----------------
Confidence 99999999999999999998 788888899999999999999987655 999999999998632
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC--CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
++.+..+. +-++++.|..|.-+|+.+...+. ..+|++++.| ++++||+..+ ..+..+. .
T Consensus 155 ------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-f 216 (476)
T KOG0646|consen 155 ------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-F 216 (476)
T ss_pred ------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-c
Confidence 22222222 44677788899999999988765 4589999999 9999999877 4444443 4
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-----------------EEEeccccC--CeeEEEEecCCCEEEEEE
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASAS 558 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----------------~~~~~~h~~--~V~~l~~spdg~~l~s~s 558 (567)
...+.+|+++|-+..+++|+.+|.|.+.++.... ...+.+|.+ .|+|++++-||.+|++|+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 6789999999999999999999999998875432 225678888 999999999999999999
Q ss_pred CCCcEEEcC
Q 008393 559 HDKFVKLWK 567 (567)
Q Consensus 559 ~Dg~I~iWd 567 (567)
.||.|+|||
T Consensus 297 ~dg~VcvWd 305 (476)
T KOG0646|consen 297 EDGKVCVWD 305 (476)
T ss_pred CCCCEEEEe
Confidence 999999997
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=202.16 Aligned_cols=282 Identities=21% Similarity=0.297 Sum_probs=223.3
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeee-----ecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN-----LEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~-----l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.+.||.+.|+++.|+|++..|++++.|+++.+|.-++. --+.. +.+.........|+|+++.+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34599999999999999999999999999999987643 22222 224455688999999999999999999999
Q ss_pred EEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EE------EeCCeeEEEEecCCC
Q 008393 355 VWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RV------FKGGTAQMRFQPHLG 425 (567)
Q Consensus 355 iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~------~~~~~~~~~~~~~~~ 425 (567)
+|...... .....+.||.+.|.+++|+|.|++|+ +.+.|.+-|+|-.-..+.. +. +.....++++-+..-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99943312 23345679999999999999998666 8889999999876522111 11 112457777777667
Q ss_pred EEEEEECCCeEEEEECC-------------------------------------------CCe-----------------
Q 008393 426 RYLAAAAENVVSILDAE-------------------------------------------TQA----------------- 445 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~-------------------------------------------~~~----------------- 445 (567)
.++.++.+..+++|+.. ++.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 77778778888888643 010
Q ss_pred ----------------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 446 ----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 446 ----------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
.+.++.+|...|++++.+|+|+++|+++.. .|++|+..+. ..+..+..|.-.|+.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence 011244788899999999999999999753 4999999766 556688899999999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEE-----EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|+|||++|++.+.|.++.+|........ ....|..-|.++.|+|++.+++|++.|.+|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999998655433 3678999999999999999999999999999994
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=189.82 Aligned_cols=244 Identities=21% Similarity=0.347 Sum_probs=207.2
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.+.++.+.+|.+.|+.++-......+.+++.|.+.+||.+++ +.++.++.+|.+.|++|.|++.+ .|+++++.|++-.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taH 215 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAH 215 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEecccc-ceEEEccCCcchH
Confidence 456778889999999999988888999999999999999998 88999999999999999999985 4677999999999
Q ss_pred EEEC------CCC--------e--------------------------eeEEEeCC---eeEEEEecCCCEEEEEECCCe
Q 008393 399 YWSI------NNG--------S--------------------------CTRVFKGG---TAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 399 iwd~------~~~--------~--------------------------~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~ 435 (567)
||.. ... + .+..++++ +.+..|-..+..+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9972 110 0 01112222 233447777889999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
..+||+++++++..+.+|....+.++-+|.-+++++.+.| +.++||++ .....+..+.+|...|+++.|..+++ ++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecCCc-ee
Confidence 9999999999999999999999999999999999999999 99999998 45678889999999999999998876 89
Q ss_pred EEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 515 VIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+.|.+|++||+++.... ...-...+++.++.+..+.+|+.--++..|+|||
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999999876543 3344567899999998888888887788899986
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=182.05 Aligned_cols=224 Identities=18% Similarity=0.321 Sum_probs=184.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.|..++.+++|.++ ..+++|+.||.|+++|+.++.. ..+..|...|.||.+++....+++|++|++|++||... ...
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 58899999999984 5788999999999999987654 45667999999999999888999999999999999986 333
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-----EEEeCCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
...+. ....|.++... ++.|+ .|+.|..|.+||+++.... ..++-.+.++++.|++.-+++++-||.|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~~Lv-Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GNRLV-VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CCEEE-EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44443 34589999887 34455 7888999999999986543 3456678899999999999999999999887
Q ss_pred ECCCC----eEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 440 DAETQ----ACRLSLQGHT---------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 440 d~~~~----~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
.++.. +..+.|+.|. .+|++|+|+|-...||+|+.| .|.+||+.+. +.+..+......|..++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 66655 5556666664 369999999998999999999 9999999765 56667766677899999
Q ss_pred EeCCCCeEEEEEc
Q 008393 506 FHPTYPSLLVIGC 518 (567)
Q Consensus 506 ~sp~~~~l~~~~~ 518 (567)
|+.+|..|++++.
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=206.79 Aligned_cols=238 Identities=17% Similarity=0.261 Sum_probs=201.2
Q ss_pred ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 008393 327 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406 (567)
Q Consensus 327 ~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~ 406 (567)
.|....+.|+|.|+|+.|++++.||.|++|+.......-.++..+...|.+++.... .|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence 688889999999999999999999999999987653334444447888888887643 56699999999999998875
Q ss_pred ---eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 407 ---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
.+..|.-+..+++++-+|.++++|+.|-.|++.+..+......+++|.++|.+|.|+|.+++||+.+.| .|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 567788899999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCCceEEEee----cC-CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-E--eccccCCeeEEEEecCCCEE
Q 008393 483 GSGSEGECVHELS----CN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T--LTAHEGLIAALAVSTETGYV 554 (567)
Q Consensus 483 ~~~~~~~~i~~~~----~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~--~~~h~~~V~~l~~spdg~~l 554 (567)
.++.....+..+. .. ...+..++|+|++..+++.+.|+.|.+|+..+.+.. . ...+...+.++.|+|+|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 8763322222111 11 344677899999999999999999999999988765 2 23444559999999999999
Q ss_pred EEEECCCcEEEcC
Q 008393 555 ASASHDKFVKLWK 567 (567)
Q Consensus 555 ~s~s~Dg~I~iWd 567 (567)
|+++.||.|.|||
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999999997
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=190.04 Aligned_cols=246 Identities=21% Similarity=0.421 Sum_probs=196.8
Q ss_pred eccCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEeCC----------------CCeeeeeecccCccEEEEEECCCC-Ce
Q 008393 283 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPSM-PR 343 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~----------------~~~~~~~l~~h~~~V~~i~fsp~~-~~ 343 (567)
.-+|.+.|.-+..++-+ .+.|+-+..|.|.||++. ..++++++.+|...-+.|+|+|-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677777777777754 455566778999999874 346788899999999999999932 36
Q ss_pred EEEEeCCCcEEEEEcCCCCcee--EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEe
Q 008393 344 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 421 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 421 (567)
|++|..-+.|++|...++...+ ..+.+|+..|..|+|+|..+.+|++|+-||+|+|||++.+.....
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~----------- 295 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA----------- 295 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce-----------
Confidence 8888888899999998754433 456789999999999999999999999999999999997632211
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 422 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+ ..+.|.+.|+.|.|+..-.+||+|++| +++|||++..+....+..++.|..+
T Consensus 296 -------------------------~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 296 -------------------------V-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred -------------------------e-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 1 235688999999999988899999999 9999999998888999999999999
Q ss_pred eEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcE-----------------EEeccc--cCCeeEEEEecCC-CEEEEEEC
Q 008393 501 FHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTET-GYVASASH 559 (567)
Q Consensus 501 i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~-----------------~~~~~h--~~~V~~l~~spdg-~~l~s~s~ 559 (567)
|+++.|+|.. ..|++++.|..|.|||+....- .-+..| ...|..+.|++.- .+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 9999999954 5678889999999999864321 022334 3468888998753 58888888
Q ss_pred CCcEEEc
Q 008393 560 DKFVKLW 566 (567)
Q Consensus 560 Dg~I~iW 566 (567)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 98 4554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=195.46 Aligned_cols=227 Identities=19% Similarity=0.354 Sum_probs=185.1
Q ss_pred CccceeccCCc-------cceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-------eeeeeecccC
Q 008393 265 GGRGMDVSQGF-------SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHS 329 (567)
Q Consensus 265 ~~~~~~~~~~~-------~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~ 329 (567)
.+.+||..+-. .+..-.+|++|...-++++|++.. -+|++|+.|++|++||+... .....+.+|.
T Consensus 148 dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~ 227 (422)
T KOG0264|consen 148 DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE 227 (422)
T ss_pred CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC
Confidence 34455555432 233445899999988899999954 48899999999999999743 2356678999
Q ss_pred ccEEEEEECCC-CCeEEEEeCCCcEEEEEcCC-CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 330 SLITDVRFSPS-MPRLATSSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 330 ~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
..|..++|++- ..+|++++.|+.+.|||+++ ..++.....+|.+.|.|++|+|-+..+|++|+.|++|++||+++..
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~- 306 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN- 306 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-
Confidence 99999999994 55889999999999999995 3556677889999999999999999999999999999999998643
Q ss_pred eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCC
Q 008393 408 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~ 485 (567)
++++++.+|...|.+|.|+|+. .+||+++.| .+.|||+..-
T Consensus 307 -------------------------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 307 -------------------------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred -------------------------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 2445888999999999999954 588888888 9999999742
Q ss_pred C-----------CCceEEEeecCCCceEEEEEeCCCCeEE-EEEcCCeEEEEECCC
Q 008393 486 S-----------EGECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSE 529 (567)
Q Consensus 486 ~-----------~~~~i~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~I~iwd~~~ 529 (567)
. .++.+....+|...|..+.|+|+..+++ +.+.|+.+.||.+..
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2 2455677889999999999999998655 456778999999864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-21 Score=190.52 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=175.8
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
-.++.+.+|++..+|-.+.+-.. +-...|.+++|++ +..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.
T Consensus 44 Rt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~ 121 (691)
T KOG2048|consen 44 RTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE 121 (691)
T ss_pred ccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc
Confidence 35667889999887654443333 4456899999995 557778888999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC------
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 413 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~------ 413 (567)
+..++.|++||.+..++...+.-. .+.+...++.|.+++|++++.+++ +|+.||.|++||...+..+.....
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~ 200 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVKSGQTLHIITMQLDRLS 200 (691)
T ss_pred cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcCCCceEEEeeecccccc
Confidence 999999999997777777653222 133445568999999999986555 999999999999999987774321
Q ss_pred -CeeE----EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 414 -GTAQ----MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 414 -~~~~----~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
.... +.|- ..+.+++|...|.|.+||...+..+..+..|...|.+++..++++++++++.| .|.-|...
T Consensus 201 k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 201 KREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred cCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 1223 3344 45889999999999999999999999999999999999999999999999888 66655443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-21 Score=191.89 Aligned_cols=276 Identities=15% Similarity=0.219 Sum_probs=225.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-eeeeeccc-CccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-~~~~l~~h-~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+.+.-...+|.|+||+.+.+.||.+-.||.|.+|++...- ....+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3444557899999999999999999999999999998653 33445544 5679999999 5558999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-----eCCeeEEEEecCCCEEEEEECC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d 433 (567)
.+ .+....+....+.|++++.+|.+. .++.|++||.+++++...++..... ++.+.++.|++++.+++.|+.|
T Consensus 98 ~~-lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HT-LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cc-CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98 677778888889999999999976 4557888999999998888765442 3567889999999999999999
Q ss_pred CeEEEEECCCCeEEEEec-----C---CCCCeeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 434 NVVSILDAETQACRLSLQ-----G---HTKPIDSVCWDPSGELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~-----~---h~~~V~~l~~sp~g~~l~s~s-~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
|.|++||..++..++... . ...-|+++.|-.++. |++|. .++|.+||...+ ..+..+..|...|.++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLAL 251 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcceeEE
Confidence 999999999987665221 1 223477888887765 45554 449999999777 7788888999999999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcE--E---EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+..+++.+++++|.|+.|.-|...+++. + ....|...|.+++..++ .|++||.|..+.+
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999999998887743 1 44578889999999876 8999999988765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=190.23 Aligned_cols=241 Identities=22% Similarity=0.408 Sum_probs=191.1
Q ss_pred EEEEEcC-------CCCeEEEEeCCCcEEEEeCCCC---eeee------------------eecccCccEEEEEECCC-C
Q 008393 291 ICCHFSS-------DGKLLATGGHDKKAVLWHTDTL---KSKT------------------NLEEHSSLITDVRFSPS-M 341 (567)
Q Consensus 291 ~~l~~s~-------dg~~lasg~~dg~I~vwd~~~~---~~~~------------------~l~~h~~~V~~i~fsp~-~ 341 (567)
.|++|.. -|+|+|.|+.|..|.|||++-- .+.. ...+|++.|.++.|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 3679999999999999998621 1111 12369999999999875 4
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---CeeeEEEeCCeeEE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 418 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~---~~~~~~~~~~~~~~ 418 (567)
+.||+|+.|.+|++||+++ +++..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4899999999999999998 8888999999999999999999999999999999999999994 44556788899999
Q ss_pred EEecCCCE-EEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 419 RFQPHLGR-YLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 ~~~~~~~~-l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.|.+.... ++++..||.|+-+|++.. +++++++.|..+|.+|+++.. -.++++++.+ .|++|++.... .+.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-~~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-PKSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-Ccccccc
Confidence 99998755 556667899999999986 999999999999999999884 4578888888 99999997532 2333322
Q ss_pred ecCCCceEEEEEeCCCCeE-EEEEcCCeEEEEECCCCcEE
Q 008393 495 SCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l-~~~~~dg~I~iwd~~~~~~~ 533 (567)
...-+...|.++.|+-.++ ++||..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2223346677788877655 45566667999999876544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=194.52 Aligned_cols=358 Identities=18% Similarity=0.256 Sum_probs=256.1
Q ss_pred eEEEecCCCccccCCCc---eeeeCCC--cchhhcccccccCC-CCCCceEEeeccCC----CCCCCCCccceeccCCcc
Q 008393 207 LMMFGTDGAGTLTSPSN---QLWDDKD--LELRADMDRLVEDG-SLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 207 ~~~~~~dg~~~~~~~~~---~~Wd~~~--g~~~~~~~~~~~~~-~~~~~v~~~~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
.+-++|.+..+|++.+. .+|...+ |-.+..+ ++.+.+ .-.......+..+. ..++.+..++|...+...
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v-RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV-RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEE-EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence 57788888666665444 7785543 3332222 222222 11112233333332 233445667887555555
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC----CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~----~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+.....+.||.+.|..++|+|.|++|++.+.|-+-+||-.- +.-.+..-.-|...++|++|-+....+++|...+.
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 66777889999999999999999999999999999998643 11223334468889999999987678888988899
Q ss_pred EEEEEcCC-------------------------------------------CCc--------------------------
Q 008393 353 VRVWDADN-------------------------------------------PGY-------------------------- 363 (567)
Q Consensus 353 I~iwd~~~-------------------------------------------~~~-------------------------- 363 (567)
+|+|+... ++.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99995420 000
Q ss_pred ------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEE
Q 008393 364 ------SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 429 (567)
Q Consensus 364 ------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 429 (567)
.+..+.||...|++++.+|+++ +++++... ..|++|+..+-..+..+.++ ++.++|+|++.+|++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 0234458999999999999976 66677653 46999999988777766664 688999999999999
Q ss_pred EECCCeEEEEECCCCe----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE--EeecCCCceE
Q 008393 430 AAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH--ELSCNGNKFH 502 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~--~~~~~~~~i~ 502 (567)
++.|.++.+|...... .....+.|+.-|.+..|+|++.++++++.| +|++|....... +++. ........|+
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVT 668 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVT 668 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCcee
Confidence 9999999999875431 123367899999999999999999999999 999999976532 2232 2334577888
Q ss_pred EEEEeCC-----CCeEEEEEcCCeEEEEECC------CCcEE-------EeccccCCeeEEEEecC--------C--CEE
Q 008393 503 SCVFHPT-----YPSLLVIGCYQSLELWNMS------ENKTM-------TLTAHEGLIAALAVSTE--------T--GYV 554 (567)
Q Consensus 503 ~~~~sp~-----~~~l~~~~~dg~I~iwd~~------~~~~~-------~~~~h~~~V~~l~~spd--------g--~~l 554 (567)
.+++.|- +..+++|-..|.|.+|... +.... ....|.+.|+.+.|.|. . ..|
T Consensus 669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEE
Confidence 8888773 2367788888999999965 11111 23467788999999975 2 347
Q ss_pred EEEECCCcEEEcC
Q 008393 555 ASASHDKFVKLWK 567 (567)
Q Consensus 555 ~s~s~Dg~I~iWd 567 (567)
++|++|..+||++
T Consensus 749 a~~g~D~~vri~n 761 (764)
T KOG1063|consen 749 AVGGDDESVRIFN 761 (764)
T ss_pred eeecccceeEEee
Confidence 9999999999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-22 Score=190.78 Aligned_cols=280 Identities=17% Similarity=0.215 Sum_probs=210.4
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCCC
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
.+++||........++....... .|..+.|+.... .+++.+.|..|++|.-... +....-+...+.-.|++.....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred ceEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 45677776654333333333222 388999988764 2234456889999965422 2222111122233444444445
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQ 417 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~ 417 (567)
.|+++|+..+.|+|||+.. +.+.+.+++|...|+++.++... .+|++++..|.|.|..+.++.....|+.+ +.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 7999999999999999996 77888999999999999998775 46679999999999999999888777654 335
Q ss_pred EEEecCCCEEEE-EECCCeEEEEECCCCeEEEEe-cCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 418 MRFQPHLGRYLA-AAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 418 ~~~~~~~~~l~~-~~~dg~I~i~d~~~~~~~~~~-~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
+.|++....++. ++.+|.|.+||+....+++.+ ..|..+...|||+|. ..+|++.+.| .|.+||++......++
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-- 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-- 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--
Confidence 678888776554 556899999999998777665 469999999999994 5688899999 9999999865433333
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTET 551 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg 551 (567)
....++..++|.++|.+|++|...|.|+.||++..+.. .+.+|...|++++|-+..
T Consensus 248 --~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 --TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 24678899999999999999999999999999876533 677999999999997654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=188.22 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=203.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeee--eecccC-ccEEEEEECCCCCeEEEEeCCCcE
Q 008393 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~--~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
..+..++-...+|.+++|.|+|. .+++++....++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|
T Consensus 248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE
Confidence 35667777788999999999998 99999999999999998876543 333443 457778889999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~ 429 (567)
.+....+ +..+..++ -.+.|..++|+.+++.++ +++.+|.|.+||++...+++.+.. +.+.++.+.++.++++
T Consensus 328 ~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 328 HLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred Eeehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence 9999988 66666665 578899999999997777 555689999999999999999864 4577888999999999
Q ss_pred EECCCeEEEEECCC------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 430 AAAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 430 ~~~dg~I~i~d~~~------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
|+..|.|.|||.++ .+++..+..-...|++|.|++|+.+||.++.. .+++-.+.+.......-.....-+.
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~ 484 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH 484 (514)
T ss_pred ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence 99999999999654 46777777777889999999999999998854 7999888654221222222333456
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
++|++|+|.+.++++|..+|.+.+|.+.
T Consensus 485 vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 485 VTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEEecCCCceEEeecCCCceeeEeec
Confidence 8999999999999999999999999874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=179.15 Aligned_cols=288 Identities=19% Similarity=0.355 Sum_probs=219.1
Q ss_pred cceeeeee-ccCCCCeEEEEEcC-----CCCeEEEEeCCCcEEEEeCCCCe---eeeeec--ccCccEEEEEECCC----
Q 008393 276 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS---- 340 (567)
Q Consensus 276 ~~~~~~~l-~~h~~~V~~l~~s~-----dg~~lasg~~dg~I~vwd~~~~~---~~~~l~--~h~~~V~~i~fsp~---- 340 (567)
+|+....+ ..|+.+|..++|++ +-..+|++| ...+.+|.....- .+..+. .|.+....++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 34444444 47889999999985 234666665 4578888765322 222222 47777888888654
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC------C
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 414 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~------~ 414 (567)
..+||.|+.-|.|+|.|+.+ +.....+.+|...|..|.|+|+...|+++++.|..|++|++.+..|+..|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 44899999999999999998 7788899999999999999999999999999999999999999999999864 6
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE----------------------------EecCCCCCeeEEEEcCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL----------------------------SLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~----------------------------~~~~h~~~V~~l~~sp~g 466 (567)
+..+.|+.++.++++++.|..|++|++...+... +-..|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 7889999999999999999999999998321110 112366667777776 5
Q ss_pred CEEEEEeCC-eEEEEeCCC-CC----------CCceEEEeecCCCceEE--EEEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 467 ELLASVSED-SVRVWTVGS-GS----------EGECVHELSCNGNKFHS--CVFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~-~~----------~~~~i~~~~~~~~~i~~--~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
+++++-+-+ .|..|.... .+ ....+.++......++- .+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 788887777 999998721 11 11233444444444444 45677789999999999999999987765
Q ss_pred E---Ee--ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M---TL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~---~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. ++ ......|...+|+.|+.+|+..++|++|.-||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 22 23345799999999999999999999999886
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=209.10 Aligned_cols=214 Identities=22% Similarity=0.344 Sum_probs=191.7
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
++.|..+.+|.+.+.+ .+..|.+|.++|.|+.|+.+..+|++|..+|+|++||++.++.+++|.+|...+..+.|+|
T Consensus 46 Gg~~~k~~L~~i~kp~---~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P 122 (825)
T KOG0267|consen 46 GGEDEKVNLWAIGKPN---AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP 122 (825)
T ss_pred CCCceeeccccccCCc---hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc
Confidence 3445556677766553 4456999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTA 416 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~ 416 (567)
-+.+++.|+.|+.+++||+.. ..+...+.+|...|.++.|.|+|. +++++++|.+++|||+..|+....|+ +.+.
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQ 200 (825)
T ss_pred ceEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccccccccccccccccc
Confidence 999999999999999999997 668899999999999999999976 56699999999999999999998888 5667
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 478 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~ 478 (567)
.+.|+|..-.+..|+.|++|++||+++.+.+...+.....|.+++|+++++.+++|....++
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 78899998888899999999999999999998888888999999999999999988776444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=176.68 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=165.8
Q ss_pred ccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCc------ee--------EEeccCCCcEEEEEEcCCCCeEEEEE
Q 008393 327 EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGY------SL--------RTFMGHSASVMSLDFHPNKDDLICSC 391 (567)
Q Consensus 327 ~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~------~~--------~~~~~h~~~V~~l~~~p~~~~li~s~ 391 (567)
.|.+.|+++...+ .|+|+++|+.||.|.+||+++... .. ..-.+|...|.++.|.|-...++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4778899999887 588999999999999999986321 00 11236888999999999888899999
Q ss_pred eCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 392 DGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 392 ~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
+.|.++++||.++......|+ +.+..-+++|-.- .++++..+-.|++.|+..|.+.+.+.+|...|.++.|+|..
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 999999999999988877665 4455566776432 34455557799999999999999999999999999999976
Q ss_pred C-EEEEEeCC-eEEEEeCCCC------------CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 467 E-LLASVSED-SVRVWTVGSG------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 467 ~-~l~s~s~d-~I~iwd~~~~------------~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
. .|++|+.| .|++||++.- +....+..-..|.+.+..++|..++.++++.+.|..+++|+...|+
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 6 57788889 9999999743 1112222344567789999999999999999999999999998875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=183.70 Aligned_cols=290 Identities=18% Similarity=0.296 Sum_probs=210.9
Q ss_pred cceeeeeeccCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEeCCC----CeeeeeecccCccEEEEEECCCC-CeEEEEe
Q 008393 276 SFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSM-PRLATSS 348 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s 348 (567)
.+......+-|.+.|+|++|+|.. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.+|.|+|.+ ..+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 345667788899999999999965 5888999999999999952 23356677899999999999954 5899999
Q ss_pred CCCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEEeCCeeEEEEecC
Q 008393 349 FDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPH 423 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~ 423 (567)
.||+|++-|+++.-. .+..+......+.++.|+.+...++ .++.-|...+||++++.. ++..+..+..++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 999999999986321 1222223445677788887766555 666667999999998654 2334457888999998
Q ss_pred CCEE-EEEECCCeEEEEECCCCe----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC---CCCCC-ceEEE
Q 008393 424 LGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG---SGSEG-ECVHE 493 (567)
Q Consensus 424 ~~~l-~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~---~~~~~-~~i~~ 493 (567)
..++ ++++.|++++|||++... ++.....|...|.+..|+|.+-.|++.+.| .|+|||.. ..... ..|..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence 7765 556669999999998642 234455699999999999987778888888 99999984 11111 11111
Q ss_pred eecCCCc--eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccC-CeeE-EEEecCCCEEEEEE-CCCcEEEc
Q 008393 494 LSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAA-LAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 494 ~~~~~~~--i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~-~V~~-l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
-..++.. ....+|.|+..+|++|..-..|.|||-..++.+ .+..... .|.+ ..|+|-+..+++|+ .-|.|+||
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1111122 234589999999999999899999999888855 4333222 4444 46899887455554 57888887
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=175.92 Aligned_cols=266 Identities=18% Similarity=0.265 Sum_probs=204.8
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------------eeeeeec-ccCccEEEEEEC-------CCCCeEEEEeC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTL------------KSKTNLE-EHSSLITDVRFS-------PSMPRLATSSF 349 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~------------~~~~~l~-~h~~~V~~i~fs-------p~~~~l~s~s~ 349 (567)
...+.|+|||..|++-+.|..+.+|++... +....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346899999999999999999999987521 1111122 234567788885 56779999999
Q ss_pred CCcEEEEEcCCCCceeEEecc--CCC---cEEEEEEcCCCCeEEEEEeCCCcEEEEEC-CCCeeeEE----------EeC
Q 008393 350 DKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRV----------FKG 413 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~--h~~---~V~~l~~~p~~~~li~s~~~dg~I~iwd~-~~~~~~~~----------~~~ 413 (567)
+.-|++||.-+ ++....+.+ |.. ...+++|+|||..|+ ++....|++||+ +.|..... ..+
T Consensus 132 ~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999988 554444432 333 356899999999877 456889999999 55543222 123
Q ss_pred CeeEEEEecCCC-EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCce
Q 008393 414 GTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC 490 (567)
Q Consensus 414 ~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~ 490 (567)
-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+.. .|..||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 467889999877 56667778899999999999999999999999999999999999999864 99999998542 44
Q ss_pred EEEeecCCC---ceEEEEEeCCCCeEEEEEcCCeEEEEECCC-Cc-EEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 491 VHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NK-TMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 491 i~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~-~~-~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+..+..|.. .-.-....|++++|++|+.+|.|++||+++ +. ...+..|...|+.++++|--.++|+++-.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 445544433 233345678999999999999999999998 55 34677899999999999998888887643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=213.41 Aligned_cols=272 Identities=19% Similarity=0.285 Sum_probs=214.3
Q ss_pred EEEEcCCCC-eEEEEe----------CCCcEEEEeCCCCe------eeeeecccCccEEEEEECCCCCe----EEEEeCC
Q 008393 292 CCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSSFD 350 (567)
Q Consensus 292 ~l~~s~dg~-~lasg~----------~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~~~~----l~s~s~d 350 (567)
.++|+|++. ++|+|. .+.++.||.++... .+..+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 578999886 555543 34566666654222 222222 3456789999987765 8999999
Q ss_pred CcEEEEEcCCC-----CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-----EeCCeeEEEE
Q 008393 351 KTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQMRF 420 (567)
Q Consensus 351 g~I~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~ 420 (567)
|.|.+||.... ...+.++..|.+.|..++|++....++++|+.||.|.|||++..+.-.. ....+.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998751 2346677889999999999999999999999999999999998554333 3456888999
Q ss_pred ecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCC--CeeEEEEcCCCC-EEEEEeCC----eEEEEeCCCCCCCceEE
Q 008393 421 QPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 421 ~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~--~V~~l~~sp~g~-~l~s~s~d----~I~iwd~~~~~~~~~i~ 492 (567)
+..-.++++.+. +|.+.|||++..+.+..+..+.. .+..|+|+|++. .|+++++| .|.+||++.-. ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 887777666554 77999999999998888877655 467899999764 45555544 69999998543 4566
Q ss_pred EeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC-EEEEEECCCcEEEc
Q 008393 493 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 566 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW 566 (567)
++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+ .+.....++..+.|+|... .++.++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88899999999999999999988 6777788999999999776 78888999999887
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=190.12 Aligned_cols=269 Identities=17% Similarity=0.271 Sum_probs=213.5
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+.|.|++|+.||+.+++|+.|+.|.+|+-.-.+. ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~--Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI--LK- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce--ee-
Confidence 789999999999888775 66899999999999999999999999999999999999999999999999765332 22
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE-EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
..|...|.|+.|+|-.. .+++|+ -...-+|........+ .....+.+.+|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35999999999999855 455776 3467789877655433 23345677889999999999999999999865544333
Q ss_pred EEe--cCCCCCeeEEEEcCCC-----CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC
Q 008393 448 LSL--QGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 448 ~~~--~~h~~~V~~l~~sp~g-----~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
..- .+...+|++|+|+|.. ..+++...+ ++.+|.+.. +.|..-..-+....|+.+.++|.++++||.|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 222 2467899999999953 366666666 777777643 3343333344556788999999999999999
Q ss_pred CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.+.+|.-+.-..-++.....+|+.++..|++.+++.|+.||+|--|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999755444446777888999999999999999999999997664
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-22 Score=201.49 Aligned_cols=221 Identities=20% Similarity=0.356 Sum_probs=186.4
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC-
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP- 339 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp- 339 (567)
.-+.+-+||+.+...-+.+..|..|+..|.++.|++. -.+|++|+.||.|++||+...+.+.++.+..+.|++|.|+|
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC
Confidence 3456789999886666777889999999999999985 47899999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EEe--CCe
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGT 415 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~~--~~~ 415 (567)
.+.+|+++.+.|.+.+||++.+..+...+..|.++|.|+.|+|+ ..+|+||+.|+.|+|||+.+.+... ++. .++
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv 266 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV 266 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeeccee
Confidence 46689999999999999999988889999999999999999996 5578899999999999998765433 332 467
Q ss_pred eEEEEecCCCEEEEEEC---CCeEEEEECCCC-eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCC
Q 008393 416 AQMRFQPHLGRYLAAAA---ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~ 483 (567)
.+++|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |...|.+++.| .|..-.++
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 89999999887766655 779999999876 56678889999999999976 45577777777 55444443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=178.40 Aligned_cols=313 Identities=18% Similarity=0.219 Sum_probs=228.2
Q ss_pred eEEeeccCCCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------Ceeee
Q 008393 250 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKT 323 (567)
Q Consensus 250 v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------~~~~~ 323 (567)
+..||...+..+.....+.+........-+.+.+++|.+.|.++.|+.++++||+|+.|..++||+++. .+++.
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~ 98 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG 98 (609)
T ss_pred eeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce
Confidence 567777776666555444333322222224467889999999999999999999999999999999863 34444
Q ss_pred eec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 324 NLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 324 ~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
... .|...|.|++|...++.|++|..+++|.+.|+++ ...+..+. ...+.|+.+..+|..+ ++++.+.++.|.+|
T Consensus 99 ~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFI 176 (609)
T ss_pred eccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEE
Confidence 443 4668999999999999999999999999999998 55444443 2235899999999954 66688899999999
Q ss_pred ECCCCe-e-----eEEEeCCeeEEEEecCCCEEEEE-ECCCeEEEEECCCCe-EEEEec------CCCCCeeEEEEcCCC
Q 008393 401 SINNGS-C-----TRVFKGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQA-CRLSLQ------GHTKPIDSVCWDPSG 466 (567)
Q Consensus 401 d~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~-~~~~~~------~h~~~V~~l~~sp~g 466 (567)
|++... . ..........+.|+|....|++. ...+.+-+||.+... .+.... .......++.|+|+|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 998754 2 22223345677899988776554 457899999998753 222221 112234678899999
Q ss_pred CEEEEEeCC-eEEEEeCCCCCCCceEEEeecC------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC---------
Q 008393 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCN------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN--------- 530 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~--------- 530 (567)
+.|.+--.+ .-.+||+-+.. ..+..+... ...+.+|+|..|.. +++|+.+-.|++|.+...
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred CeehhhhccCCCEEeeeeccc--ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc
Confidence 998888777 67788886531 222222211 12366778877766 888888889999987421
Q ss_pred ---------------cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 531 ---------------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 531 ---------------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....+.+|..-++.+.|+|...+|++.+....++||-
T Consensus 334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 1336789999999999999999999999999999993
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=189.92 Aligned_cols=247 Identities=15% Similarity=0.259 Sum_probs=187.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ecccCccEEEEEECCCCC-eEEEEeCCCcEEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 357 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd 357 (567)
.....|.+.|..+.|-|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+.+. .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 55668999999999999767899999999999999999988877 889999999999999655 789999999999999
Q ss_pred cCCCCc--------------------------eeEEeccCCCcEEE---EEEcCCCCeEEEEEeC-CCcEEEEECCCCee
Q 008393 358 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 407 (567)
Q Consensus 358 ~~~~~~--------------------------~~~~~~~h~~~V~~---l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~ 407 (567)
+.-.+. .++....+...|.+ +.+..|... |++++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeeccccc
Confidence 874220 01122234444444 444455454 456666 99999999997654
Q ss_pred eEEE--------------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCC--eEEEEecCCCCC--eeEEEEcCCCCEE
Q 008393 408 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 469 (567)
Q Consensus 408 ~~~~--------------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~--V~~l~~sp~g~~l 469 (567)
.... ..+..++.....|.++++.+.|+.|++||+.+. .++..+.++... ...-..+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 4321 124566777788899999999999999999875 344445443221 1223568999999
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCC
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~ 530 (567)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999997643 4455677888999999998843 34777799999999999654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=172.07 Aligned_cols=241 Identities=16% Similarity=0.232 Sum_probs=179.9
Q ss_pred eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc----eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
..|++|.+.|++++|+.||++|++++.|+.|+||+++.-.. +++.-- .-+..+.+.|.||-..+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999985211 111111 1235678999999999999998888999
Q ss_pred EEECCCCee---eEE------------EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc
Q 008393 399 YWSINNGSC---TRV------------FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463 (567)
Q Consensus 399 iwd~~~~~~---~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s 463 (567)
+|.+...+- ... ....+..+-....+.++++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 998754321 110 11122334445556778888889999999999 87777777666666778999
Q ss_pred CCCCEEEEEeCC-eEEEEeCCCC-----CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc------
Q 008393 464 PSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK------ 531 (567)
Q Consensus 464 p~g~~l~s~s~d-~I~iwd~~~~-----~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~------ 531 (567)
|+|++|++++-- .|++|.+--+ .+...+..+++|...|..++|+++...+++.+.||+++|||..-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999988 9999998533 3345677899999999999999999999999999999999985321
Q ss_pred -EE-----EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 532 -TM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 532 -~~-----~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.+ .+.+-.+....|+++|+|..||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 11 1122233444899999999887643 2345543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=207.66 Aligned_cols=242 Identities=19% Similarity=0.363 Sum_probs=201.5
Q ss_pred CCCeEEEEEcCCCCe----EEEEeCCCcEEEEeCCCC------eeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEE
Q 008393 287 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 355 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~----lasg~~dg~I~vwd~~~~------~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~i 355 (567)
....+.++|.+.|.. ||.|..||.|.+||.... ..+.+...|.+.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 445678999987765 888999999999998652 34566778999999999999765 9999999999999
Q ss_pred EEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-----eeEEEEecCCCE-EE
Q 008393 356 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGR-YL 428 (567)
Q Consensus 356 wd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~-l~ 428 (567)
||+.+....... -......|.+|+|+..-.+++++++.+|.+.|||++..+.+..+... ...+.|+|+... ++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874433322 12356789999999988899999999999999999999877666543 457899998864 55
Q ss_pred EEECC---CeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 429 AAAAE---NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 429 ~~~~d---g~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
+++.| -.|.+||++.- ..+..+.+|...|.++.|++.+ .+|++++.| .|.+|+.+++ +.+.++...++++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 55554 38999999875 6777888999999999999965 899999999 9999999887 78889988899999
Q ss_pred EEEEeCCCC-eEEEEEcCCeEEEEECCCCc
Q 008393 503 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 503 ~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~ 531 (567)
.+.|.|... .+++++-||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 67788899999999998765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=172.15 Aligned_cols=280 Identities=18% Similarity=0.206 Sum_probs=204.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+...|++|.+.|+|+.|..+++ |.+|..-|.|.+|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 5567889999999999998875 8889999999999999999999998 67888999998887 5889999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-cEEEE-----------ECCCCeeeEEEe-------CCeeEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYW-----------SINNGSCTRVFK-------GGTAQM 418 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-~I~iw-----------d~~~~~~~~~~~-------~~~~~~ 418 (567)
+.. .. ....|.-.++++.|++.. +...+... ....+ |......+...+ +.+.+.
T Consensus 84 ia~-s~---~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 84 IAY-SA---FISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ccC-cc---eEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 986 22 222344556666666431 11211111 11122 221111121111 122222
Q ss_pred EEec-CCC--EEEEEECCCeEEEEECCCCe----------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 419 RFQP-HLG--RYLAAAAENVVSILDAETQA----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 419 ~~~~-~~~--~l~~~~~dg~I~i~d~~~~~----------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
.+.. ++. .+++|..+|.|.+||+.++. .......|..+|.++.|.+.-..=++|+.+ .+..|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 2221 122 35566779999999999973 334445689999999998755555677777 899998864
Q ss_pred C-CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 485 G-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 485 ~-~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
. .....-.++......+..+.+-||++.++++|.|+.|+||..++...+ .+..|.+.|++++|+|+..++|.++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 3 222233344445667888899999999999999999999999999888 67789999999999999999999999999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|.+|+
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99996
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=179.16 Aligned_cols=254 Identities=18% Similarity=0.237 Sum_probs=199.2
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCCcEEEEEcCC---CCceeEEeccCCCcEEEEEEcCCCCeEE
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLI 388 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~li 388 (567)
+|+.+......++.+...|++++|+|..+ ++++|..-|.|-+||+.+ ...-+..+..|..+|.+|.|+|.....|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44455566666778899999999999654 788899999999999952 2334567788999999999999988888
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeE-EEEecCCCCCeeEEEE
Q 008393 389 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 462 (567)
Q Consensus 389 ~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~V~~l~~ 462 (567)
++.+.||+|++-|++.......+.. ....+.|+.+...++++..-|.+.+||++++.. ...+.-|+..|.+|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999998754433322 344566778888888888888999999998754 6677779999999999
Q ss_pred cCC-CCEEEEEeCC-eEEEEeCCCCCCCc-eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC----CCcEEEe
Q 008393 463 DPS-GELLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 535 (567)
Q Consensus 463 sp~-g~~l~s~s~d-~I~iwd~~~~~~~~-~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~----~~~~~~~ 535 (567)
+|- -.+||+++.| +++|||++...... .+.....|...|.+..|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 995 4588999999 99999998764433 244555688899999999999889999999999999984 2222222
Q ss_pred ccccC------CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 536 TAHEG------LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 536 ~~h~~------~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..|.. ......|.|+..+|++|-.-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 23322 234557999999999998877777765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-20 Score=181.90 Aligned_cols=208 Identities=18% Similarity=0.244 Sum_probs=148.1
Q ss_pred CccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee------eeeecccCccEEEEEECCCCCeEEE
Q 008393 274 GFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLAT 346 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~------~~~l~~h~~~V~~i~fsp~~~~l~s 346 (567)
|..-+.+..+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-. ...+.+..-.|.++.|+|...-|+.
T Consensus 66 Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~ 145 (1012)
T KOG1445|consen 66 GRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILA 145 (1012)
T ss_pred CccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEE
Confidence 334456778999999999999999 556899999999999999974321 1223344557889999998776777
Q ss_pred EeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCC----eeEEEEe
Q 008393 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG----TAQMRFQ 421 (567)
Q Consensus 347 ~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~----~~~~~~~ 421 (567)
.+..|.++|||+.+ .+.+..+.+|...|.+..|+.||. ++++.+.|..|+|||.+.. +.+....++ ...+.|.
T Consensus 146 s~a~g~v~i~D~st-qk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~ 223 (1012)
T KOG1445|consen 146 SGAHGSVYITDIST-QKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA 223 (1012)
T ss_pred eccCceEEEEEccc-CceeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCccCCCccccccccccchhheeeec
Confidence 77789999999998 777888999999999999999986 6668899999999999864 445444433 2345555
Q ss_pred cCCCEEEEEECC----CeEEEEECCCC-eEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCC
Q 008393 422 PHLGRYLAAAAE----NVVSILDAETQ-ACRLSLQG-HTKPIDSVCWDPSGELLASVSED--SVRVWTVG 483 (567)
Q Consensus 422 ~~~~~l~~~~~d----g~I~i~d~~~~-~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~ 483 (567)
-+-.++++.+.+ ..|++||.+.. ..++++.- ....|.---|+||.++|+.++.+ ++.++.+.
T Consensus 224 Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 224 GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 554566666553 57888888764 33333321 22234444566666666666655 45555543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=172.05 Aligned_cols=285 Identities=22% Similarity=0.288 Sum_probs=204.3
Q ss_pred CCCCCCCccceeccCCc------cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--------C------
Q 008393 259 TDPRDAGGRGMDVSQGF------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T------ 318 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~------~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--------~------ 318 (567)
+++.|..+|+|.+..+. ..+....|..|...|+++.|+|+|++||+|+.+|.|.+|... +
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 45566677777666543 445677899999999999999999999999999999999765 2
Q ss_pred --CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 319 --LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 319 --~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
......+.+|...|..++|+|++.++++++.|..+++||+.. +.....+..|...|..++|.|-+. ++++-+.|..
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~ 188 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRH 188 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhh-hhhhhccCcc
Confidence 344567789999999999999999999999999999999998 888899999999999999999865 5558888888
Q ss_pred EEEEECCCCeeeEEEeCCe-eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 397 IRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.+++.+.....+......+ ....+.... ....++|.-++.+ .-...++|+|+|.+|++...-
T Consensus 189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e--------~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 189 PEGFSAKLKQVIKRHGLDIMPAKAFNERE--------GKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred cceeeeeeeeeeeeeeeeEeeecccCCCC--------cceeeeeecCchh---------hhhhhcccCCCCcEEEcccce
Confidence 8888776655444332100 000011110 1133333333322 234567888999888875421
Q ss_pred ----------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC-----------------CCCeEEEEEcCCeEEEEECC
Q 008393 476 ----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 476 ----------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp-----------------~~~~l~~~~~dg~I~iwd~~ 528 (567)
..++|+-. .....+..+.+.......+.|+| -.+.+++....+.|+|||..
T Consensus 252 ~~~g~~~~~n~tYvfsrk--~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRK--DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred eeeCCceeeceeEeeccc--cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 23444432 22234444555455554444443 23456667777899999999
Q ss_pred CCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 529 ENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 529 ~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+...+ .-.-|-..|+.++|++||.+|+..+.||...
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 87766 4456889999999999999999999999654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-17 Score=172.51 Aligned_cols=295 Identities=30% Similarity=0.499 Sum_probs=235.5
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCCC
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
+..+.+|+... .......+..|...|.+++|++++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++
T Consensus 133 d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 133 DGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 56778888776 34677889999999999999999999998885 9999999999999999999999999999999999
Q ss_pred C-eEEEEeCCCcEEEEEcCCCCceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEE---eCCe
Q 008393 342 P-RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGT 415 (567)
Q Consensus 342 ~-~l~s~s~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~---~~~~ 415 (567)
. .+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++|++..... ...+ ...+
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred ceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 8 555559999999998885 55555 688888876 44899998 4555899999999999997665 4444 3456
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEE-eCC-eEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~-s~d-~I~iwd~~~~~~~~~i 491 (567)
..+.|.|++..+++++.++.+.+||..+........ .|...+..+.|.+++..++.+ ..| .+.+|++.... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~ 364 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PL 364 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---ee
Confidence 778899988888888888889999999887776665 788889999994332555555 566 88889997653 22
Q ss_pred EEeecCCCceEEEEEeCCCCeEEE-EEcCCeEEEEECCCCcEEEecccc-CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....... .+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus 365 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 365 KTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 2222222 278888888 543444 578899999999998877554444 8899999999999999999999999995
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=176.33 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=211.0
Q ss_pred CceeeeCCCcchhhcccccccCCCCCCceEEeecc----CCCCCCCCCccceeccCCc-cceeeeeeccCCCCeEEEEEc
Q 008393 222 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH----DDTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFS 296 (567)
Q Consensus 222 ~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~d~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s 296 (567)
.++|||....+.....-..... .+++-.+|-.. -...+.|..+++|...... ....+..+.+. .-.|++..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~--pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAE--PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACA 88 (673)
T ss_pred ceEEeecccccCccccccCCCC--CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhh
Confidence 3589999887665544433332 11111222111 1234456666777654331 12222223332 44566666
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcE
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 375 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V 375 (567)
....|+++||..+.|+|||+....+.+.+++|...|+++.|+....|||+++..|.|.|..+.+ +.....|... ...|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeE
Confidence 6668999999999999999998888889999999999999999999999999999999999988 4444445433 4556
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEEEEecCCCE-EEEEECCCeEEEEECCCCeEEEEe
Q 008393 376 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 376 ~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
.-+.|++..+.++.+++.+|.|.+||+.....+..+ ..+...++|+|.... +++.+.|..|.+||.+..+....+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 689999999999999999999999999987766543 457788999998765 455677999999999987766665
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
. ...+...++|.++|.+|+.|... .|..||++..+ ..+..+..|...|++++|-+.-
T Consensus 248 ~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred e-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 5 45688999999999999999988 99999998653 6777888899999999998764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-17 Score=172.14 Aligned_cols=282 Identities=31% Similarity=0.547 Sum_probs=228.0
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-eeeeecccC-ccEEEEEE-CCCCC-eEEEEeC-CCcEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 356 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-~~~~l~~h~-~~V~~i~f-sp~~~-~l~s~s~-dg~I~iw 356 (567)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998886 677776644 37777777 78887 5555445 9999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEE-E
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 431 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-~ 431 (567)
++.........+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+.+ .+..+.|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99864566788889999999999999987 4446665 99999999999877777765 67888999888745554 7
Q ss_pred CCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC
Q 008393 432 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~ 509 (567)
.|+.|.+||...+.... .+.+|...+ ...|++++.++++++.+ .+++|++..... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888887 688888875 44899999888889999 999999986643 23333667889999999998
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-Ee--ccccCCeeEEEEecCCCEEEEE-ECCCcEEEcC
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~--~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iWd 567 (567)
+..+++++.|+.+.+||+.+.... .. ..|...+..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888988988988999999888766 33 3788889999994332455555 6788898885
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=180.28 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=160.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECC--CCCeEEEEeCCCcEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTVR 354 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp--~~~~l~s~s~dg~I~ 354 (567)
.....|.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456789999999999999999999999999999999998888887775 8999999999998 456899999999999
Q ss_pred EEEcCC---------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EE---------E---e
Q 008393 355 VWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RV---------F---K 412 (567)
Q Consensus 355 iwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~---------~---~ 412 (567)
++|+.. .....+.+..|...|..|+..|++.+.+.++++||+|+-+|++....- .. + -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999984 233456677899999999999999899999999999999999874321 11 1 1
Q ss_pred CCeeEEEEecCCCE-EEEEECCCeEEEEECCCC--------e----------EEEEec-CCC--------C---CeeEEE
Q 008393 413 GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQ--------A----------CRLSLQ-GHT--------K---PIDSVC 461 (567)
Q Consensus 413 ~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~--------~----------~~~~~~-~h~--------~---~V~~l~ 461 (567)
....++.++|.... |++|+.+-..++||.+.. . ++..+. +|- . .++-++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 24567888887765 556667889999994321 1 122221 222 1 145678
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCC
Q 008393 462 WDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 462 ~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
|+|+|.-|+..-.+ .|+++|+.
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeec
Confidence 99999755555444 99999987
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=172.53 Aligned_cols=205 Identities=26% Similarity=0.418 Sum_probs=164.7
Q ss_pred cccCccEEEEEECCCCC--eEEEEeCCCcEEEEEcCC---------------CCceeEEeccCCCcEEEEEEcCCCCeEE
Q 008393 326 EEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDLI 388 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~~p~~~~li 388 (567)
..|.+.|+.+.-.+-++ +.++=+..|.|+||++.. ...++.++.+|...=+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35778888887777544 556667789999999852 2345778889999999999998655555
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-CC
Q 008393 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GE 467 (567)
Q Consensus 389 ~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-g~ 467 (567)
++|.--+.|++|...++..... ...|.+|+..|..|+|+|. ..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd------------------------------------~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVD------------------------------------QRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred ccCccccceEeeeeccCceeec------------------------------------CccccccccchhhhccCCccCc
Confidence 5777777888888766432210 0145679999999999995 45
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----EeccccCCe
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLI 542 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~~~V 542 (567)
+|++|+.| .|+|||++.+....++.. +.|...|+.+.|+....+|++|+.||++.|||++.-+.- .+..|..+|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 89999999 999999999877677766 888999999999999999999999999999999865433 888999999
Q ss_pred eEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 543 AALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 543 ~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
++|.|+|.. ..|+++|.|..|.|||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEE
Confidence 999999854 5688888999999997
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=180.08 Aligned_cols=240 Identities=19% Similarity=0.245 Sum_probs=195.4
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
...+.+|++.|++|...|.|.+|++|+.||+|+||.+.+ +.+++++. ..+.|.|++|+|.+..-++....+..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345679999999999999999999999999999999998 78888776 5678999999998766554444444455554
Q ss_pred CCCCee---------------------------------------e-EEEeCCeeEEEEecCCCEEEEEECC---CeEEE
Q 008393 402 INNGSC---------------------------------------T-RVFKGGTAQMRFQPHLGRYLAAAAE---NVVSI 438 (567)
Q Consensus 402 ~~~~~~---------------------------------------~-~~~~~~~~~~~~~~~~~~l~~~~~d---g~I~i 438 (567)
..-|.. + ......+..+.|+..|.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 332210 0 0112245678899999999888774 48999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
+++...+...-|.-..+.|.++.|+|...+|++++...|+|||+... ..+..+......|..++++|.|..|++++.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99988776666666678899999999999999999999999999754 556666667778999999999999999999
Q ss_pred CCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 519 YQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 519 dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|+.+..||+.-.... ++..|...|++++|++.-.++++|+.||++.||
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999866433 788999999999999999999999999999886
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=184.18 Aligned_cols=256 Identities=21% Similarity=0.332 Sum_probs=198.0
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--------CCeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--------~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
...+++.|...|..++|.+-...|++++.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 334899999999999999999999999999999999993 346788999999999999999999999999999
Q ss_pred CcEEEEEcCCC---------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---Ce--e
Q 008393 351 KTVRVWDADNP---------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT--A 416 (567)
Q Consensus 351 g~I~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~--~ 416 (567)
|+|+.|++... ......+.||.+.|+.++++.....|+ +|+.||+|+.|+...... .+|.. +. .
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999965421 133467789999999999999866655 999999999999887665 33321 22 2
Q ss_pred EEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCC-------CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC
Q 008393 417 QMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 487 (567)
Q Consensus 417 ~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~ 487 (567)
.+.+.... ...++...-+.-.+++.+....+..+... ...+.-+.++|.+.+.+++.+| .|+++|..++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-- 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-- 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc--
Confidence 23332222 12223333344444555554444443321 2346778899999999999999 9999999877
Q ss_pred CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
..++....|...++++++.|+|.+|++++.|+.+++|.+....++ ....|.
T Consensus 522 -~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 522 -KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred -ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 788888899999999999999999999999999999999776665 444443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-19 Score=161.51 Aligned_cols=245 Identities=16% Similarity=0.253 Sum_probs=183.2
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd 357 (567)
..+.+.+|..+|.|++||+||+.|+|++.|..|.+||+..|.+++.++ ...+|+.+.|+|... ..++.-.+..-.+-+
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVID 135 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence 445678999999999999999999999999999999999999988887 567899999999544 333333444455666
Q ss_pred cCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEE
Q 008393 358 ADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 358 ~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~ 430 (567)
+..+...+..... ......+..|.+.|++++ +|...|.+.++|..+.+++..++- .+..+.++..+..++.-
T Consensus 136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred ecCCceeeccCCCccccccccccccccCCCCEEE-EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEe
Confidence 6542221111110 011122335788877555 999999999999999999988764 45678899999999999
Q ss_pred ECCCeEEEEECCCC-------eE--EEEecC--CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC
Q 008393 431 AAENVVSILDAETQ-------AC--RLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 431 ~~dg~I~i~d~~~~-------~~--~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
+.|..|+.|+++.- ++ .+++.. .+..-.+++|+.+|.|++.++.. .++||.-..| ..++.+.+.
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~ 291 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGT 291 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCC
Confidence 99999999998631 11 122211 22345689999999999999876 7999999877 667777776
Q ss_pred C-CceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 498 G-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 498 ~-~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
. .....+.|+|-...|++. ..|.|++|....
T Consensus 292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred chhheeecccccceeeeeec-cCCceEEEEeec
Confidence 6 567888999998877776 778999997654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-20 Score=179.40 Aligned_cols=290 Identities=18% Similarity=0.288 Sum_probs=226.8
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCC--CCeEEEEeCCCcE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTV 353 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~--~~~l~s~s~dg~I 353 (567)
+.....|..|.+.|..+.|...|..|++|+.|..|.+||+..++.+..+. +|...|..-.|-|. ...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34556789999999999999999999999999999999999988887765 79999998889884 4589999999999
Q ss_pred EEEEcCCCCce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---------CCeeEEEEec
Q 008393 354 RVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQP 422 (567)
Q Consensus 354 ~iwd~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~ 422 (567)
++=.+...++. ...+..|.+.|..++..|+..+-|.+|+.|+.+.-+|++.......+. -....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99888764543 345667999999999999999999999999999999998876443332 1345677888
Q ss_pred CCC-EEEEEECCCeEEEEECCCCeE------EEEecC------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC-
Q 008393 423 HLG-RYLAAAAENVVSILDAETQAC------RLSLQG------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE- 487 (567)
Q Consensus 423 ~~~-~l~~~~~dg~I~i~d~~~~~~------~~~~~~------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~- 487 (567)
... .+++++.|-.+++||.+.-.. +.++.. ....|++++|+.++.-|.+...| .|++|.-..+..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 765 677888899999999875321 233322 23469999999766545555555 999995543221
Q ss_pred -C-------ceEEE-eecCCCc--eEEEE-EeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEE
Q 008393 488 -G-------ECVHE-LSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 554 (567)
Q Consensus 488 -~-------~~i~~-~~~~~~~--i~~~~-~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l 554 (567)
+ ..+.. +++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++.+ .+.+...-|+||.-+|--..|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 12222 5666543 55554 6788899999999999999999999988 455655689999999999999
Q ss_pred EEEECCCcEEEc
Q 008393 555 ASASHDKFVKLW 566 (567)
Q Consensus 555 ~s~s~Dg~I~iW 566 (567)
|++|-|.-||||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=169.16 Aligned_cols=225 Identities=17% Similarity=0.333 Sum_probs=176.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeeEEEe--C----C
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFK--G----G 414 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~----~ 414 (567)
..+|++...|.|++||..+ +..+..++++...+..+.|... +.+.+.+|+.||+|++||++.......+. . .
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 5789999999999999998 7888999999999999999764 67788899999999999999876554443 2 2
Q ss_pred eeEEEEecCCCEEEEEEC----CCeEEEEECCCCeE-EEEe-cCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAA----ENVVSILDAETQAC-RLSL-QGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~-~~~~-~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
..++.....++.+++++. +..|.+||++..+. +..+ ..|...|++|+|+| +-++|++|+-| .|.|||++...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 233444445555555544 56899999998765 4443 56999999999999 56799999999 99999998765
Q ss_pred CCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCc----------------------------------
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENK---------------------------------- 531 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~---------------------------------- 531 (567)
+...+.....+...|..+.|..++ +.|++.+.+++..+|+++.+.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 545555555677889999998776 568899999999999887654
Q ss_pred ----------------------------EEEec-cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 ----------------------------TMTLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ----------------------------~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...+. +|..-|+++.|.-.+.++.|||+||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 00122 2556677888887888999999999999995
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-17 Score=165.83 Aligned_cols=263 Identities=13% Similarity=0.156 Sum_probs=185.1
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe-CCCcEEEEeCC-CCee--eeeecccCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~I~vwd~~-~~~~--~~~l~~h~~~V~~i~f 337 (567)
.+..+++|++...-.++.+..+.. .+....++++|++++|++++ .++.|.+|+++ +++. +.... .......++|
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 456788888864445556666653 45677899999999987764 57899999986 3432 22222 2335678999
Q ss_pred CCCCCeEEEEeC-CCcEEEEEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE----
Q 008393 338 SPSMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---- 409 (567)
Q Consensus 338 sp~~~~l~s~s~-dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~---- 409 (567)
+|++++|++++. ++.|.+|++++.+.. +..+. +.....+++++|+++.++++...++.|.+||+.+...+.
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 999999888875 889999999753322 22222 334567889999999888888888999999998743221
Q ss_pred ---EE--eCCeeEEEEecCCCEEEEEEC-CCeEEEEECCC--C--eEEEEecCC------CCCeeEEEEcCCCCEEEEEe
Q 008393 410 ---VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 410 ---~~--~~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~--~--~~~~~~~~h------~~~V~~l~~sp~g~~l~s~s 473 (567)
.. ..+...+.|+|++.+++++.. ++.|.+||+.. + +.+..+..+ ......+.|+|+|++|+++.
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 11 123467899999999988877 89999999973 3 333333321 12234688999999999986
Q ss_pred CC--eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECC
Q 008393 474 ED--SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 528 (567)
Q Consensus 474 ~d--~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 528 (567)
.. .|.+|++.... ..+.+..... ......+.|+|+|++|+++.. +++|.+|++.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 53 89999996542 2223333332 234567899999999998876 7899999875
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=193.31 Aligned_cols=274 Identities=22% Similarity=0.385 Sum_probs=213.5
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
.+.++.|.+|.+.|+|+.|...|.++++|+.|..++||..+++.+.....+|.+.|+.++.+.+...+++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-----E--eCCeeEEEEecCCCEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----F--KGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-----~--~~~~~~~~~~~~~~~l~~ 429 (567)
.+.. +.++..+.+|++.|++|+|+|-- +.+.||++++||.+-.-.+.. + +.-+..+.|...+..+++
T Consensus 260 rl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9998 88899999999999999999863 678899999999881111111 1 112344556666777888
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
++.++.-..|...... .+...+.-+.++.+- .+.+++-.+ .+.+|++.++ ...+.+.+|...+..+.++
T Consensus 334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeec
Confidence 8888877766654321 122222222222222 345555566 8999999877 6677888899999999999
Q ss_pred CCCCeE-EEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 508 PTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 508 p~~~~l-~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|-+..+ ..++.||...|||+-.+..+ ...+| +.+....||+||..++....-|.+.|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 977655 46788999999999988766 33454 456677999999888776666777664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=166.49 Aligned_cols=262 Identities=12% Similarity=0.191 Sum_probs=181.5
Q ss_pred EEEeCCCcEEEEeCCC-Ce--eeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCce--eEEeccCCCcEE
Q 008393 303 ATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMGHSASVM 376 (567)
Q Consensus 303 asg~~dg~I~vwd~~~-~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~--~~~~~~h~~~V~ 376 (567)
++...++.|.+|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|+++..+.. +... ...+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 4446789999999964 33 444554 345677899999999987765 4788999999743322 2222 2334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCC-e---eeEEEeC--CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEE-
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNG-S---CTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 448 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~---~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~- 448 (567)
.++|+|+++.++++...++.|.+|++.+. . .+..+.+ +...+.++|++..++++.. ++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 89999999988877767999999999742 2 2233322 4566789999999877666 6899999997632221
Q ss_pred ------EecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCC-CCCceEEEeecC------CCceEEEEEeCCCCeE
Q 008393 449 ------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPSL 513 (567)
Q Consensus 449 ------~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~-~~~~~i~~~~~~------~~~i~~~~~sp~~~~l 513 (567)
... .......++|+|+|++|+++.. + .|.+|++... ...+.+..+... ......+.++|++++|
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 1234578999999999988886 4 9999999742 122334433321 1123358899999999
Q ss_pred EEEEc-CCeEEEEECCCCc-EEEeccc---cCCeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 514 LVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 514 ~~~~~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
+++.. ++.|.+|++.... ...+..+ ......+.|+|+|++|+++.. +++|.+|+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99864 5799999986532 2222222 235678999999999998775 88999984
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=165.36 Aligned_cols=233 Identities=15% Similarity=0.348 Sum_probs=177.6
Q ss_pred EEEEECC-------CCCeEEEEeCCCcEEEEEcCCCC--ceeE------------------EeccCCCcEEEEEEcCCCC
Q 008393 333 TDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLR------------------TFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 333 ~~i~fsp-------~~~~l~s~s~dg~I~iwd~~~~~--~~~~------------------~~~~h~~~V~~l~~~p~~~ 385 (567)
.|+.|.. .|+|+|.|+.|..|.|||++-.. .+.. .-.+|+..|.+|.|+..-.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 36799999999999999986211 1111 1236899999999999999
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCE-EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEE
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 461 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~ 461 (567)
+++++|+.|.+|++||+.++++...+. ..+.++.|+|.... ++.|+.|++|.++|.+........-...+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 999999999999999999999988876 46788999998754 66777799999999994322111111346789999
Q ss_pred EcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcEEEeccc
Q 008393 462 WDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTAH 538 (567)
Q Consensus 462 ~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~~~~~h 538 (567)
|.+... .++++.+| +|+-+|++... +++.++..|...|.+++++..-+ ++++++.++.|++|++..........|
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999665 45555566 99999998653 89999999999999999998665 567788899999999976554433333
Q ss_pred c---CCeeEEEEecCCC-EEEEEECCCcEEEcC
Q 008393 539 E---GLIAALAVSTETG-YVASASHDKFVKLWK 567 (567)
Q Consensus 539 ~---~~V~~l~~spdg~-~l~s~s~Dg~I~iWd 567 (567)
. +...|+++.|+-. +|+.||..+.++|||
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEee
Confidence 2 2356677777664 577888888899997
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=170.35 Aligned_cols=134 Identities=14% Similarity=0.216 Sum_probs=109.8
Q ss_pred CEEEEEECCCeEEEEECCCC-------eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 425 GRYLAAAAENVVSILDAETQ-------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~-------~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.++++++.||.|++|.+..+ .+...+..|...|+++.|+| ..+.|++++.| +|++||+.+. +....+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~---~~~~~l~ 717 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA---KLYSRLV 717 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh---hhhheec
Confidence 46788888999999987653 44567788999999999999 56789999999 9999999877 5667889
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc---ccCCeeEEEEecCCCEEEEEECCC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA---HEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
+|.+.|..++|+|+|+.+++.+.||+|++|+-+.++.....+ ....-..+.|.-||++|++.|.|.
T Consensus 718 gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 999999999999999999999999999999998776542221 112334577888999998888774
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-18 Score=155.00 Aligned_cols=274 Identities=22% Similarity=0.286 Sum_probs=187.9
Q ss_pred eEEeeccCCCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCC-------CcEEEEeCCC---
Q 008393 250 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT--- 318 (567)
Q Consensus 250 v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~d-------g~I~vwd~~~--- 318 (567)
..+|+..-...-.|..+.+.+...+...-.-+.|..|.+.|+.++-+| |.++|+++..+ ..+.||.+..
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 345554444444445555555555444444567888999999999999 55667776542 3578998753
Q ss_pred ------Ceeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-----cCCCcEEEEEEcCCCCe
Q 008393 319 ------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDD 386 (567)
Q Consensus 319 ------~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~ 386 (567)
.+++..+. .+-+.|.|+.|.|++..|++-. |..|.+|+++.....+..+. ++....++-+|+|.
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH--- 181 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH--- 181 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC---
Confidence 23444454 5666899999999999988877 77799999997544232221 12333444444441
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCC
Q 008393 387 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPS 465 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~ 465 (567)
..+..++...++++..||+++.++...+. .|...|..+.|.|+
T Consensus 182 ------------------------------------Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn 225 (370)
T KOG1007|consen 182 ------------------------------------HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN 225 (370)
T ss_pred ------------------------------------CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCC
Confidence 22333344444555555555544444443 47788999999998
Q ss_pred CC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCC-------------
Q 008393 466 GE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE------------- 529 (567)
Q Consensus 466 g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~------------- 529 (567)
.. +|++|++| .|+|||.+.. ...+.++.+|...++++.|+|.. .+|++++.|..|.+|....
T Consensus 226 kq~~lvt~gDdgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de 303 (370)
T KOG1007|consen 226 KQHILVTCGDDGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE 303 (370)
T ss_pred ceEEEEEcCCCccEEEEeccCC--CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence 76 67778888 9999999854 36788999999999999999965 5678888999999995421
Q ss_pred -----------------CcEEEeccccCCeeEEEEecCCCE-EEEEECCCcEEE
Q 008393 530 -----------------NKTMTLTAHEGLIAALAVSTETGY-VASASHDKFVKL 565 (567)
Q Consensus 530 -----------------~~~~~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~i 565 (567)
+...++..|+..|.+++|+.-..+ +|+-+.||.|.|
T Consensus 304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 112266789999999999876654 678899999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=158.48 Aligned_cols=240 Identities=20% Similarity=0.334 Sum_probs=182.3
Q ss_pred cCCCCeEEEEEcCCC----CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcC
Q 008393 285 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg----~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~ 359 (567)
.|....+.++|+-|. -+||+||.-|.|+|.|+.++++...+.+|...|+.|.|.|+. ++|++++.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 367777788887653 378999999999999999999999999999999999999975 589999999999999999
Q ss_pred CCCceeEEe---ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eC-----------------
Q 008393 360 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG----------------- 413 (567)
Q Consensus 360 ~~~~~~~~~---~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~----------------- 413 (567)
+ ..++..+ .+|.+.|.+++|+.++. .|++|+.|..|++|++...+....+ ..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 6666655 57999999999999988 5559999999999999854321111 00
Q ss_pred --------CeeEEEEecCCCEEEEEECCCeEEEEECC-CCe-------------EEEEecCCCCCeeEE--EEcCCCCEE
Q 008393 414 --------GTAQMRFQPHLGRYLAAAAENVVSILDAE-TQA-------------CRLSLQGHTKPIDSV--CWDPSGELL 469 (567)
Q Consensus 414 --------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~-------------~~~~~~~h~~~V~~l--~~sp~g~~l 469 (567)
.+.++.| -++.+++-+.++.|..|... -.+ .+..+.-....|+-| +|++-+++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0111111 24677888889999999872 111 222333333445544 456678899
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEE-EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
|.|... .|.+||++..+...+-. ........|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 99999998875533222 222345668999999999999999999999999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=158.20 Aligned_cols=227 Identities=15% Similarity=0.281 Sum_probs=181.0
Q ss_pred eeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCC------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 323 TNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
-.+.+|++.|..++|+| +...||+|+.|.+|.||.+-..+ .++..+.+|...|--+.|+|...+++++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999999 55689999999999999987533 357788999999999999999999999999999
Q ss_pred cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEE
Q 008393 396 EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASV 472 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~ 472 (567)
.|.+||+.+++.+..+.. -+..+.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.+|+++.+|
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 999999999998777663 4678899999999999999999999999999999988888763 3456688889866666
Q ss_pred eC---C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEE--Ee--ccccCCee
Q 008393 473 SE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TL--TAHEGLIA 543 (567)
Q Consensus 473 s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~--~~--~~h~~~V~ 543 (567)
-. + .+-+||..+...+..+.++.. .+.|.---|.+|...|+.+| .|+.|+.|.+.....+ .+ .....+-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 43 3 699999988777666666654 45566667888888776655 5789999999877633 22 22334455
Q ss_pred EEEEecC
Q 008393 544 ALAVSTE 550 (567)
Q Consensus 544 ~l~~spd 550 (567)
.+.|-|.
T Consensus 314 G~g~mPK 320 (472)
T KOG0303|consen 314 GMGFMPK 320 (472)
T ss_pred ccccccc
Confidence 5666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=159.67 Aligned_cols=204 Identities=14% Similarity=0.268 Sum_probs=157.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--------eeeee--c----------------------
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNL--E---------------------- 326 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--------~~~~l--~---------------------- 326 (567)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.+|.-.-.- .+... .
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK 124 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK 124 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence 557789999999999999999999999999999999754211 11100 0
Q ss_pred -----ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCC----CeEEEEEeCCCc
Q 008393 327 -----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNK----DDLICSCDGDGE 396 (567)
Q Consensus 327 -----~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~----~~li~s~~~dg~ 396 (567)
.....|.+++|..||.+|+.|-.+|+|.|-+-....+ .+..-.+.+.+|.+++|+|.. ..++++.....+
T Consensus 125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 0234578889999999999999999999997654222 222333577899999999863 346667777888
Q ss_pred EEEEECCCCeee--EEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 397 IRYWSINNGSCT--RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 397 I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
+.+|.+.....- +.+.-...++.+.++|.++++|+.|+.+++|-- .|-.+-++.....+|+.++..|++.+++.|+.
T Consensus 205 LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 205 LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence 888877644332 344556778999999999999999999999864 45555566667789999999999999999999
Q ss_pred C-eEEEEeCC
Q 008393 475 D-SVRVWTVG 483 (567)
Q Consensus 475 d-~I~iwd~~ 483 (567)
| +|..|++.
T Consensus 284 DGTiACyNl~ 293 (1081)
T KOG1538|consen 284 DGTIACYNLI 293 (1081)
T ss_pred cCeeehhhhH
Confidence 9 99999875
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=151.29 Aligned_cols=277 Identities=20% Similarity=0.325 Sum_probs=197.1
Q ss_pred CCCCCcCeEEEecCCCcccc----CCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCC-CCCCCccceeccCC
Q 008393 200 SGTTSKPLMMFGTDGAGTLT----SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD-PRDAGGRGMDVSQG 274 (567)
Q Consensus 200 ~~~~~~~~~~~~~dg~~~~~----~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~d~~~~~~~~~~~ 274 (567)
........+.|.+.+..++. .....+|+....- .-.+ +......+..+ ..-....+|.+.+.
T Consensus 37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P---~d~~----------ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSP---FDQR----------ILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCC---CCCc----------eEEEEEeccCCCcceeeEEEEecccc
Confidence 34455667777777666544 3455788876531 1111 11111111111 11223456665543
Q ss_pred ------ccceeeeeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee-eeeec-----ccCccEEEEEECC--
Q 008393 275 ------FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP-- 339 (567)
Q Consensus 275 ------~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~-~~~l~-----~h~~~V~~i~fsp-- 339 (567)
.+++.+..|. .+-+.|.|+.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+|
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 3356666776 6778999999999999998876 89999999987665 33332 3566788889998
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEE
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR 419 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 419 (567)
+++.+++.+ |+++..||+++..+....-..|...|..++|+|+..+++++|+.||.|+|||.+..
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------------- 247 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------------- 247 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------------
Confidence 676776664 78899999998666666667899999999999999999999999999999998753
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCC-----------
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGS----------- 486 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~----------- 486 (567)
..++..+.+|...|+++.|+|. ..+|++++.| .|.+|...+-.
T Consensus 248 ------------------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de 303 (370)
T KOG1007|consen 248 ------------------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE 303 (370)
T ss_pred ------------------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence 2445578889999999999994 5688888888 89888764211
Q ss_pred ----------C-----CceEEEeecCCCceEEEEEeCCCCeEEE-EEcCCeEEEEECCC
Q 008393 487 ----------E-----GECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSE 529 (567)
Q Consensus 487 ----------~-----~~~i~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~I~iwd~~~ 529 (567)
. ...+.++..|+..|++++|+.-..++++ -+.||.+.|=.+..
T Consensus 304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 1124567788999999999998887655 57889888876654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=146.97 Aligned_cols=227 Identities=19% Similarity=0.244 Sum_probs=170.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCC---------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
.|.+-+|+|.+++|+.|..+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 356668999999999999999999998863 2345566789999999999993 3454766 69999998
Q ss_pred CCCCeee----E--EE----------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC
Q 008393 402 INNGSCT----R--VF----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465 (567)
Q Consensus 402 ~~~~~~~----~--~~----------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~ 465 (567)
.+..... . .. -..++.+...|..+.++.++.|+.++.||+++++....+++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 7653321 0 00 125678889999999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc
Q 008393 466 GELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 537 (567)
Q Consensus 466 g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~ 537 (567)
...+++|++| ++||||.++.+....+...+.. +..|-+++. +..++++| ....+.+|.++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCCceeEEeccCCCceEEEe
Confidence 5567899999 9999999988554444433221 223444444 44455554 44589999999999887777
Q ss_pred ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 538 HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 538 h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
-.+.|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 7778888888643 56667755555444
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=171.84 Aligned_cols=243 Identities=21% Similarity=0.296 Sum_probs=179.4
Q ss_pred eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC-------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEe
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~ 392 (567)
....++..|.+.|+.+.|.+....|++++.||+|++|++.. .-+++.+|.+|.++|.|+++.+++..++ +|+
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg 363 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGG 363 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eec
Confidence 34457788999999999999999999999999999999932 1246789999999999999999987655 999
Q ss_pred CCCcEEEEECCCCe----------eeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC--CCCe
Q 008393 393 GDGEIRYWSINNGS----------CTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--TKPI 457 (567)
Q Consensus 393 ~dg~I~iwd~~~~~----------~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~~~V 457 (567)
.||+|+.|++.... ....+.+ .+..++++....+|+.++.||++++|+...... .++... .+.-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999999765211 1122333 345678999999999999999999999877665 233321 1223
Q ss_pred eEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeec-------CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 458 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~-------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.++.+-...-.+..++.. .--++++... ..+..+.. ....+..++++|.....+++..|+.|+++|..
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 445553332111111111 2223333222 12222111 12346778999999999999999999999999
Q ss_pred CCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++.+ ...+|...++++++.|+|.+|+++++||.|++|+
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 99988 7889999999999999999999999999999995
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=152.91 Aligned_cols=231 Identities=16% Similarity=0.286 Sum_probs=175.1
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce------------eEEeccCCCcEEEEEEc-------CCCCeEEEEEe
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS------------LRTFMGHSASVMSLDFH-------PNKDDLICSCD 392 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~------------~~~~~~h~~~V~~l~~~-------p~~~~li~s~~ 392 (567)
...+.|+|||..|++.+.|..+.+|++...... ..........|...+|. |+ ..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeecc
Confidence 456799999999999999999999988531110 01111234667888886 44 45777889
Q ss_pred CCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEECCCeEEEEEC-CCCeE--EEEec-----CCCCC
Q 008393 393 GDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDA-ETQAC--RLSLQ-----GHTKP 456 (567)
Q Consensus 393 ~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~dg~I~i~d~-~~~~~--~~~~~-----~h~~~ 456 (567)
.+.-|++||.-+|+....+.. ...+++|+|+|..|+++ ....|++||+ +.++. +.... +..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999998877653 35679999998777664 5789999999 55532 22222 23677
Q ss_pred eeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEE
Q 008393 457 IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM 533 (567)
Q Consensus 457 V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~ 533 (567)
|.+++|+| +.+.++.++.. .+-||.-... ..+..+.+|.+.|+.+.|.++|+.|++|+. +..|..||++.....
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 89999999 45599999988 7777766444 667778899999999999999999999986 469999999876543
Q ss_pred --EeccccC-CeeE--EEEecCCCEEEEEECCCcEEEcC
Q 008393 534 --TLTAHEG-LIAA--LAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 --~~~~h~~-~V~~--l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+..|.+ .-.. +...|++++|++|+.||.|++||
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 5556655 2223 34468999999999999999997
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-17 Score=149.64 Aligned_cols=235 Identities=23% Similarity=0.359 Sum_probs=174.1
Q ss_pred CCCCCCCcccee-ccCCccceeeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCC---------CCeeeeeec
Q 008393 259 TDPRDAGGRGMD-VSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLE 326 (567)
Q Consensus 259 ~~~~d~~~~~~~-~~~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~---------~~~~~~~l~ 326 (567)
+...|..+++|+ ......+......+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-. ......++.
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV 109 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence 445677889999 555568889999999999999999976 58999999999999999752 123455677
Q ss_pred ccCccEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCcee-----EEe-------ccCCCcEEEEEEcCCC--CeEEEE
Q 008393 327 EHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSL-----RTF-------MGHSASVMSLDFHPNK--DDLICS 390 (567)
Q Consensus 327 ~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~~~-----~~~-------~~h~~~V~~l~~~p~~--~~li~s 390 (567)
.....|++|.|.|. |-.||+++.||.||||+.-...... ..+ ..+.....|+.|++.. ..+|+.
T Consensus 110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 78889999999995 6689999999999999986533221 111 1345566677776532 234444
Q ss_pred EeCC-----CcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC
Q 008393 391 CDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465 (567)
Q Consensus 391 ~~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~ 465 (567)
|+.+ +.++||....+ .+....+.++.+|..+|+.|+|.|+
T Consensus 190 gs~e~a~~~~~~~Iye~~e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNEN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred EcccCCccccceEEEEecCC-----------------------------------cceeeeehhcCCCCCcceeeeeccc
Confidence 4433 24444433221 1122344567789999999999995
Q ss_pred ----CCEEEEEeCCeEEEEeCCCC-----------------CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 466 ----GELLASVSEDSVRVWTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 466 ----g~~l~s~s~d~I~iwd~~~~-----------------~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
-.+||+++.|.|+||.++.. -..+.+..+..|...+..+.|+-.|..|.+.|.||.|++
T Consensus 235 ~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred cCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 34888999889999999731 123456778899999999999999999999999999999
Q ss_pred EECC
Q 008393 525 WNMS 528 (567)
Q Consensus 525 wd~~ 528 (567)
|...
T Consensus 315 Wkan 318 (361)
T KOG2445|consen 315 WKAN 318 (361)
T ss_pred hhhh
Confidence 9764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=174.68 Aligned_cols=290 Identities=19% Similarity=0.235 Sum_probs=207.4
Q ss_pred eeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCC-------CeeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 278 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~-------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
..+..+..|...|..++.+++. .+|++|+.||+|++|+... .+...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4678889999999999998866 9999999999999999853 2333344445778999999999999999999
Q ss_pred CCcEEEEEcCCCCc------eeEEeccC-CC-cEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEe-----CCe
Q 008393 350 DKTVRVWDADNPGY------SLRTFMGH-SA-SVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----GGT 415 (567)
Q Consensus 350 dg~I~iwd~~~~~~------~~~~~~~h-~~-~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~ 415 (567)
||.|++.+++.... ..+....+ .+ .|...+|..... .+++.+...+.|..||++.......++ |-+
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999975111 11111112 22 333444443333 367778889999999999877665543 467
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCC---CCEEEEEeC-C--eEEEEeCCCCCCC
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPS---GELLASVSE-D--SVRVWTVGSGSEG 488 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~---g~~l~s~s~-d--~I~iwd~~~~~~~ 488 (567)
+.++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|- ..+.++++. . .|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 899999999999999999999999999998887665 24577888877763 245555554 3 8999999987322
Q ss_pred ceEEEe----------e------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-------------------
Q 008393 489 ECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------- 533 (567)
Q Consensus 489 ~~i~~~----------~------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~------------------- 533 (567)
..+..- . .+......+.+...+..+++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 222111 0 01112233455556678999999999999997543200
Q ss_pred --------------------------------------EeccccCCeeEEEEecC-CCEEEEEECCCcEEEcC
Q 008393 534 --------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 --------------------------------------~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iWd 567 (567)
.-..|..+|+++++... -.+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 11247778888887543 35899999999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=151.70 Aligned_cols=239 Identities=20% Similarity=0.369 Sum_probs=179.0
Q ss_pred ccCCCCeEEEEEcCCCC-----eEEEEeCCCcEEEEeCCCCeeee----ee-----cccCccEEEEEECC-CCCeEEEEe
Q 008393 284 RASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKT----NL-----EEHSSLITDVRFSP-SMPRLATSS 348 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~-----~lasg~~dg~I~vwd~~~~~~~~----~l-----~~h~~~V~~i~fsp-~~~~l~s~s 348 (567)
-.|.-+++.+-|.|+.+ +||+. +..+++|.+...+... .+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999873 56665 4589999987422211 11 24677899999987 566899999
Q ss_pred CCCcEEEEEcCCC--CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eC-----CeeEEEE
Q 008393 349 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 420 (567)
Q Consensus 349 ~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~-----~~~~~~~ 420 (567)
-|-+..|||++++ +.....+..|...|..|+|...+..+|++++.||.||+||++..+.-..+ ++ ....++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 33456778999999999999988999999999999999999987654443 22 2345677
Q ss_pred ecCCCEEEEEE-C-CCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCC---CceEE
Q 008393 421 QPHLGRYLAAA-A-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSE---GECVH 492 (567)
Q Consensus 421 ~~~~~~l~~~~-~-dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~---~~~i~ 492 (567)
++....+++.. . ...|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|+++++| .+.+||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 77766555433 3 468999999985 788899999999999999994 5689999999 999999975422 11222
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
.+. .+..|..+.|++...--++...++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 222 56779999999755444444444555543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=173.08 Aligned_cols=278 Identities=15% Similarity=0.227 Sum_probs=206.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc---CccEEEEEECC--CCCeEEEEeCCCcEEEEEcCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h---~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..+-..+.|+|-...++++...-.|+|||.+.++....+..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 335567888998889999988889999999999988777644 35688888865 4558999999999999975432
Q ss_pred C----ceeEEecc-------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----eEEE-EecCCC
Q 008393 362 G----YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMR-FQPHLG 425 (567)
Q Consensus 362 ~----~~~~~~~~-------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~~~~-~~~~~~ 425 (567)
. +.+..+.+ ..+.-.-++|.....+|+++| +-..|+|||.....++..+..+. +.+. -...++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 22322221 111124466777767777554 48899999999988887776432 2232 234468
Q ss_pred EEEEEECCCeEEEEECCCC---eEEEEecCCCCC--eeEEEEcCCCCE-EEEEeCC-eEEEEeCCCCCCCceEEEeecC-
Q 008393 426 RYLAAAAENVVSILDAETQ---ACRLSLQGHTKP--IDSVCWDPSGEL-LASVSED-SVRVWTVGSGSEGECVHELSCN- 497 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~--V~~l~~sp~g~~-l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~- 497 (567)
.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|-- |++|+.+ .|++||++.... .....+..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999875 356677788887 999999886654 8889888 999999997522 222222222
Q ss_pred --CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-------ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 --GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 --~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++..+++..|++...+++|+. +.|+||++.......+.. ..+.+.|++|+|-.-+||+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998888888 999999998776553332 235689999999999999999999999983
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=156.33 Aligned_cols=202 Identities=19% Similarity=0.314 Sum_probs=161.1
Q ss_pred eeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCccEEEEEECCC-CCeEEEEeC
Q 008393 279 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSF 349 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~ 349 (567)
..-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..|.+|...|.-++|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 5578999999999999998643 456788899999999999996 458999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeEEEEecCCC
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLG 425 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~ 425 (567)
|.+|.+|++.+ +..+.++. |...|+++.|+.+|. ++++.+.|..|+|||.++++.+..-.++ ...+.|-.++.
T Consensus 153 Dn~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 99999999999 55555666 999999999999987 5558899999999999999988775432 34466777777
Q ss_pred EEEEEEC----CCeEEEEECCCCe---EEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC
Q 008393 426 RYLAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 426 ~l~~~~~----dg~I~i~d~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~ 485 (567)
+++.+. +..+.+||....+ ....+. ..+.|.---|++|.++|+.++.+ .|+.|.+...
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 555443 6789999987643 223333 34556666688899988888866 8999999754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=144.00 Aligned_cols=231 Identities=17% Similarity=0.295 Sum_probs=173.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~ 364 (567)
...+..+.|+.|...|..|+.|| .++|..+..............|..+-|+.. ++|..+.+ ..++++++.. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence 45677788999999999998887 467777765554444444455666777654 66665554 3489999886 444
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeEEEEecCC--CEEEEEEC--CCeE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 436 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~--~~l~~~~~--dg~I 436 (567)
+..+. ....|.++.++.+ +|+ ++-++ .|+|||+++.+.++++..- ...++++++. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 44333 5677999999854 455 55544 4999999999998877532 2234455544 45655433 6899
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeCCCCe
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 512 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~~ 512 (567)
.+||+.+-+.+..+..|++.+-+++|+++|.+||++++. -||||.+.++ ..+.++... ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999988 6999999877 556666533 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 008393 513 LLVIGCYQSLELWNMSE 529 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~ 529 (567)
|.+.+..++|.||.+++
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=164.08 Aligned_cols=280 Identities=17% Similarity=0.285 Sum_probs=210.4
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC----CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
..|+-.++|.+++|+++++|+|..||.|.+|.--. ......+.-|...|.++.|+++|.+|++|+..|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777899999999999999999999999996322 23345677899999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--------------CCeeEEEEecCCC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLG 425 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~ 425 (567)
+++ ...+..-.+.|..+.++||++.+. ....|+.|.+....+......+. +-...++++|..+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 855 356667789999999999987555 66679999999886655443332 2245678999888
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecC-----C------CCCeeEEEEcCCCCEEEEEeC----------C-eEEEEeCC
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVSE----------D-SVRVWTVG 483 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h------~~~V~~l~~sp~g~~l~s~s~----------d-~I~iwd~~ 483 (567)
.++..+..+.|.+||+-+.+.+..+.. + ...++.++.+-.|.++++.-. . .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999998876665531 1 234677888888999998741 2 58899876
Q ss_pred CCCCCceE--EEeecCCCceEEEEEe-CCCC-eEEEEEcCCeEEEEECCCCc----------EE-EeccccCCeeEEEEe
Q 008393 484 SGSEGECV--HELSCNGNKFHSCVFH-PTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 484 ~~~~~~~i--~~~~~~~~~i~~~~~s-p~~~-~l~~~~~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~s 548 (567)
.....-.+ .....|+..+...++. +... ..++++.||.++||-+...+ +. .-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 54332222 2233566655555544 3333 78899999999999883321 11 112478899999999
Q ss_pred cCCCEEEEEECCCcEEEcC
Q 008393 549 TETGYVASASHDKFVKLWK 567 (567)
Q Consensus 549 pdg~~l~s~s~Dg~I~iWd 567 (567)
.||..| +++.|++|.|||
T Consensus 519 ~dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCCcEE-EEecCCEEEEec
Confidence 999655 566788999997
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=160.98 Aligned_cols=260 Identities=17% Similarity=0.252 Sum_probs=191.7
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE-CC-------CCCeEEEEeCCCcEEEE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW 356 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f-sp-------~~~~l~s~s~dg~I~iw 356 (567)
.|...|.|+.|+.....+.+++.+..+.-||+.+ .....+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5777888999999887777776444444455443 222222222222222211 11 23478999999999888
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--eeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
+-. +..-+....|.+.|.+-.|+|+|..|+ +.++||.|++|.-... ..+..+...+.|++|.|+.+.++.+. .+
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 765 455577889999999999999999887 8899999999985432 12334556788999999988777654 46
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.+.|--+.....+...+.|.+-|.++.|++..+++++|++| ..+|||-- +..+..-..|+.+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChhccceeeeeeccc-cce
Confidence 67777777777777899999999999999999999999999 99999964 2567777789999999999999 434
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 514 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+++ ..+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 242 ~v~-S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LLW-SYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 443 33455521 233467999999999999999998887653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-16 Score=137.66 Aligned_cols=267 Identities=15% Similarity=0.215 Sum_probs=189.0
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC----------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
..|.+-+++|.+++|++|..+|.|.++.+.. ...+....+|.++|+.++|.. .+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEee
Confidence 4566778999999999999999999998753 233455679999999999983 36666664 9999998
Q ss_pred cCCCCceeE-------EeccC-----CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEec
Q 008393 358 ADNPGYSLR-------TFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQP 422 (567)
Q Consensus 358 ~~~~~~~~~-------~~~~h-----~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~ 422 (567)
.....+... ...-| --.|+++...|..+.++++| .|+.++.||+++|+..+.++++. .++....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 764222110 01112 24588999999888787555 79999999999999999999875 4455556
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecCC----------CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 423 HLGRYLAAAAENVVSILDAETQACRLSLQGH----------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----------~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
..+.+++++.||++++||.++++++..+... ...|-+++ -+..+|++|+.-.+.+|.+++.+. .++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~-t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSES-TCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCc-eEEE
Confidence 6789999999999999999999988876532 12355555 456688877766999999987622 3343
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecC-CCEEEEEECCCcEEEc
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLW 566 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW 566 (567)
.+ ...+..+.|..+ .+++++..+.|.-|.+..--...........++..|+-. -++|-.++..+.+.|+
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33 345666677654 577888778899998865444444443334455555322 2455566666666664
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=146.16 Aligned_cols=249 Identities=18% Similarity=0.265 Sum_probs=184.8
Q ss_pred eeeeccCCCCeEEEEEcC--C-CCeEEEEeC----CCcEEEEeCC--CCeeeeee-cccCccEEEEEECCCCC-----eE
Q 008393 280 ANSVRASTSKVICCHFSS--D-GKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP-----RL 344 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~--d-g~~lasg~~----dg~I~vwd~~--~~~~~~~l-~~h~~~V~~i~fsp~~~-----~l 344 (567)
+..+.. .-.++++.|+. + ..+||.|+. .++|.|..++ +++.+..- ..|..+++.+.|.|+.. +|
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 334433 34677888884 2 347888873 4666666553 44444332 36889999999999863 45
Q ss_pred EEEeCCCcEEEEEcCCCCcee--------EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee
Q 008393 345 ATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~--------~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 416 (567)
|+++ ..+|+|.+......+ ..-..+..++++.+|+.-..++|.+++-|-+..|||++++..
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------- 185 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------- 185 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---------
Confidence 5544 349999987422111 112346788999999988888998999999999999887521
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
+.....+..|..+|..|+|...+ .++|+++.| .||+||++..+....+.+-
T Consensus 186 ---------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 186 ---------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred ---------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence 11223667799999999999855 488999999 9999999988777777776
Q ss_pred ecCCCceEEEEEeCCC-CeEEEEEcCC-eEEEEECCCCcEE--EeccccCCeeEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 495 SCNGNKFHSCVFHPTY-PSLLVIGCYQ-SLELWNMSENKTM--TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~-~~l~~~~~dg-~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
.....+...++|++.. +++++...|. .|.|.|++..... ++.+|.+.|++++|.|.. ..|+|||+|..+.|||
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 6667788899999865 4566666554 8999999876543 889999999999999965 5799999999999997
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=162.44 Aligned_cols=257 Identities=17% Similarity=0.262 Sum_probs=183.8
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCce-e----EEeccCCCcEEEEEEcC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS-L----RTFMGHSASVMSLDFHP 382 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~-~----~~~~~h~~~V~~l~~~p 382 (567)
+.+.||+++........-.-...|+|++|+|. ..+|+.|+.+|.|.+||+...... . .....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999876333333335667999999995 557888889999999999875442 1 22346889999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEECCCCeee-E-----E---------EeCCeeEEEEecCC-CEEEEEECCCeEEEEECCCC-
Q 008393 383 NKDD-LICSCDGDGEIRYWSINNGSCT-R-----V---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 444 (567)
Q Consensus 383 ~~~~-li~s~~~dg~I~iwd~~~~~~~-~-----~---------~~~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~- 444 (567)
+... =|++++.||.|+.|+++.-..- . . -....+.+.|.+.. ..+++|+.+|.|.--+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5333 2448888999999988754321 0 0 11245677887755 56788888898887443322
Q ss_pred -------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE-E
Q 008393 445 -------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL-V 515 (567)
Q Consensus 445 -------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~-~ 515 (567)
+....+..|.++|+++.++|-+..++..+.| +|+||.... ....+..+..+...+++++|+|....++ +
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 1233556688999999999966544444447 999999862 2245666666777799999999876554 5
Q ss_pred EEcCCeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+|.|.|||+...... ....+....+.+.|++.|++|+.|...|.|.||+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 556899999999755432 4444466777888899999999999999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=151.00 Aligned_cols=261 Identities=16% Similarity=0.214 Sum_probs=188.0
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCeeeeee--cccC-ccEEEEEEC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHS-SLITDVRFS 338 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~~~~~~l--~~h~-~~V~~i~fs 338 (567)
+.+|+++..++ ..+..+++|...+..++|.. ....+.+|+.||+|++||+........+ ..+. .+..|++..
T Consensus 50 gsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 50 GSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred CeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 35778887776 45566778888888889877 4578899999999999999876655443 4454 466777777
Q ss_pred CCCCeEEEEeC----CCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eE
Q 008393 339 PSMPRLATSSF----DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TR 409 (567)
Q Consensus 339 p~~~~l~s~s~----dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~ 409 (567)
..+..+++|.. +-.|.+||++.....++. ...|...|++++|+|....++++|+.||.|.+||++.... +.
T Consensus 127 ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 77878888854 677999999986664443 4579999999999999999999999999999999986532 23
Q ss_pred EEe--CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCC------------CCeeEEEEcC-CCCEEEEEe
Q 008393 410 VFK--GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVS 473 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------------~~V~~l~~sp-~g~~l~s~s 473 (567)
++. ..+..+.|...+ .++.+.+......+|+++.+.+...+.... ..+... .+| ++..++.++
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAG 285 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEec
Confidence 333 245677787664 578888999999999999887655443210 111111 223 444555554
Q ss_pred CC--eEEEEeC---CCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 474 ED--SVRVWTV---GSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 474 ~d--~I~iwd~---~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+ +..++-+ .++.....+..+.+ |...|.++.|.-.+..+++||.||.+.+|...
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 42 4444433 34444455556665 55667888899899999999999999999853
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=162.54 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=195.7
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee--eee----ecccCccEEEEEE
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRF 337 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~--~~~----l~~h~~~V~~i~f 337 (567)
..-+|+..+.... ...+ .-...|+|++|+| +..+||.|..+|.|.+||+..+.. ... ...|...|+.+.|
T Consensus 223 ~~~vW~~~~p~~P--e~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP--ELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred eEEEEecCCCCCc--eEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4567887766222 2222 2367899999999 557888889999999999987655 322 3368999999999
Q ss_pred CCCC--CeEEEEeCCCcEEEEEcCCCCceeEE-----ec------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 338 SPSM--PRLATSSFDKTVRVWDADNPGYSLRT-----FM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 338 sp~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..+. .-|++++.||.|..|+++.-..+... .. .-...+++++|.+.....++.|+++|.|..-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7654 45999999999999988752221111 11 12356899999998888888999999998844332
Q ss_pred CeeeE-----------EEeCCeeEEEEecCCCEEEEEECCCeEEEEECC-CCeEEEEecCCCCCeeEEEEcCCCC-EEEE
Q 008393 405 GSCTR-----------VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLAS 471 (567)
Q Consensus 405 ~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s 471 (567)
.+... ...+.+..+.++|-...++..+.|-+|+||... ...++..+..+...|++++|||..- .|++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 22111 123467788899999888888889999999998 7788888888888899999999765 5666
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+..+ .|.+||+..... ..+..........+.+.|++.|+.|++|...|.+.+|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 6666 999999976433 344444444666777788889999999999999999999654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-15 Score=142.46 Aligned_cols=276 Identities=15% Similarity=0.249 Sum_probs=191.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
+-.+..++|++.-..+|++..|-.|++||-.. +....++. ....|+|++|-|. ++.|++|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34566789998767788999999999999876 55555553 4467999999995 45788888777 999988643221
Q ss_pred -------------eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE---eCCeeEEEEecCCCEEE
Q 008393 365 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 428 (567)
Q Consensus 365 -------------~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 428 (567)
+....+| ..|++|.|.+||..++-+.-.|..|.|||..++.++... .+++.-+.|+|++..++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 2223345 789999999999877755566889999999999877655 24677899999999999
Q ss_pred EEECCCeEEEEE-CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCC------------CceEEEee
Q 008393 429 AAAAENVVSILD-AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE------------GECVHELS 495 (567)
Q Consensus 429 ~~~~dg~I~i~d-~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~------------~~~i~~~~ 495 (567)
++..|+..++|. .++.....-.. ..+.|...+|+|+|.+|+....+.-++|.+....+ ...+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 999999999994 44444443333 34589999999999988877776444554432111 01111111
Q ss_pred -----c----CCCceEEEEEeCCCCeEEEEEcCC--------eEEEEECCCCcEEEec--c--ccCCeeEEEEec---CC
Q 008393 496 -----C----NGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 551 (567)
Q Consensus 496 -----~----~~~~i~~~~~sp~~~~l~~~~~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---dg 551 (567)
. -.+.+.+++|.|.|.+|++.-..+ .|.+||.+....+.+. + .......++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146688999999999999986654 4777887766555332 1 111244556654 45
Q ss_pred CEEEEEECCCcEEEc
Q 008393 552 GYVASASHDKFVKLW 566 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iW 566 (567)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 556555556665543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=163.76 Aligned_cols=237 Identities=15% Similarity=0.172 Sum_probs=166.5
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCee--eeeecccCccEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVR 336 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~--~~~l~~h~~~V~~i~ 336 (567)
.+..+.+||.... ....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++
T Consensus 182 ~~~~i~i~d~dg~----~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~ 254 (429)
T PRK01742 182 QPYEVRVADYDGF----NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPA 254 (429)
T ss_pred ceEEEEEECCCCC----CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCcee
Confidence 3456667776433 235567788899999999999999987654 3699999988754 3334444 34689
Q ss_pred ECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCC
Q 008393 337 FSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG 414 (567)
Q Consensus 337 fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~ 414 (567)
|+|||+.|+.++ .+|.+.||.++........+..+...+....|+|+|+.+++++..++...||++... .....+...
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~ 334 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR 334 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC
Confidence 999999888765 688766664432223345666777788899999999988878777888888876532 222222222
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
.....|+|++..+++++.++ +.+||+.+++.......+ ....+.|+|||++|++++.+ .+.+|++.. .....+..
T Consensus 335 ~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-~~G~~~~~ 410 (429)
T PRK01742 335 GYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS-ADGRFKAR 410 (429)
T ss_pred CCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEE-CCCCceEE
Confidence 24567999999988887754 566999988765333222 34568899999999999877 777777632 12256677
Q ss_pred eecCCCceEEEEEeCC
Q 008393 494 LSCNGNKFHSCVFHPT 509 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~ 509 (567)
+..+...+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7777777888899885
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=163.04 Aligned_cols=230 Identities=17% Similarity=0.184 Sum_probs=162.3
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 383 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~ 383 (567)
+..|++||.+... ...+..|...+.++.|+|||+.|+.++.+ ..|++||+.++.. .+..+.+| ...++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4789999986554 56677788889999999999999888754 3699999987332 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEE--EECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECC--CCeEEEEecCCCCC
Q 008393 384 KDDLICSCDGDGEIRY--WSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRLSLQGHTKP 456 (567)
Q Consensus 384 ~~~li~s~~~dg~I~i--wd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~~~~~~~~h~~~ 456 (567)
|+.++++.+.+|.+.| ||+.++....... .......|+|++..++.++. ++...||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 9988877777886555 4666665443322 23567889999998877664 6767777654 3332 222 3433
Q ss_pred eeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC---CCCcEE
Q 008393 457 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 533 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~---~~~~~~ 533 (567)
.++.|+|||++|+..+.+.+.+||+.++... . +... .....+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~---lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-V---LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-E---ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4678999999999888787777999876321 1 1111 12345689999999999999887766654 444455
Q ss_pred EeccccCCeeEEEEecC
Q 008393 534 TLTAHEGLIAALAVSTE 550 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spd 550 (567)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788888999999984
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=160.17 Aligned_cols=261 Identities=18% Similarity=0.279 Sum_probs=207.6
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.-+.+.|+.+|++|+.|+..|.|..+|+.++++...+.. ...|.++.|..+..+||++- ...++|||-. +..++.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 446799999999999999999999999999999888874 34589999998888888775 4568999876 5566777
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
+.| ..|..+.|.|. ..|+++++..|.++.-|+.+|+.+..+. +.+..++-+|.+..+-+|..+|+|.+|.....+
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 654 56899999998 6788899999999999999999887664 456778889998899999999999999999999
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
++..+..|.++|.+|++.++|.|+++.+.| .|+|||++... .+.++.. ..+...++||..| +++.+....|.|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 999999999999999999999999999999 99999998764 3333333 3455666787766 666666678999
Q ss_pred EEC-CCC---cEEEec--cccCCeeEEEEecCCCEEEEEECCC
Q 008393 525 WNM-SEN---KTMTLT--AHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 525 wd~-~~~---~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
|.- -.+ ....+. ...+.|..+.|.|-...|..|-.-|
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 942 221 111122 2235899999998776666554443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-15 Score=140.55 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=171.6
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCe
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 406 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--g~I~iwd~~~~~ 406 (567)
...+..+.|+.+...|..|+.|| .++|..+...+... .......|..+-|+.. |++..+.+ +.+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577778999999999999999 78998876444222 1222344556667633 55444443 459999999888
Q ss_pred eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC---eEEEE
Q 008393 407 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED---SVRVW 480 (567)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d---~I~iw 480 (567)
.+..+.-+...++.--+.++++++-.+. |+|||+++.+.++++.. +...+.++.++..+.+||.-+.- .|.||
T Consensus 80 ~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 7766554444444333445676666655 99999999999988765 34456666666677788875432 79999
Q ss_pred eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECCCCcEE-Eecc--ccCCeeEEEEecCCCEEEE
Q 008393 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~l~s 556 (567)
|+.+- ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.++..+ .+.- -...|.+++|+|++.+|++
T Consensus 159 d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 159 DTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred Ecccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 99765 77888889999999999999999999999999 5799999999877 4442 2346889999999999999
Q ss_pred EECCCcEEEcC
Q 008393 557 ASHDKFVKLWK 567 (567)
Q Consensus 557 ~s~Dg~I~iWd 567 (567)
.+..++|.||+
T Consensus 236 sS~TeTVHiFK 246 (391)
T KOG2110|consen 236 SSNTETVHIFK 246 (391)
T ss_pred ecCCCeEEEEE
Confidence 99999999985
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=141.59 Aligned_cols=283 Identities=17% Similarity=0.255 Sum_probs=202.2
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.++.-..+|+|.+|++|+..+|++.....|.||..... +..+++..|...|+.|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445689999999999999999999999999987654 577889999999999999999999999999999999999
Q ss_pred CCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-------eeEEEeCCeeEEEEecCCCEEEE
Q 008393 359 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 359 ~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 429 (567)
..++ ++...+..++..++++.|+|.++ .|++|+.-..|.||-++... ..+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 4433 23445566899999999999965 56689889999998877543 22335567889999999999999
Q ss_pred EECCCeEEEEECC-----C-------------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 430 AAAENVVSILDAE-----T-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 430 ~~~dg~I~i~d~~-----~-------------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
++.|+..++|..- . |..+..+....+.|..+.|+|+|..|+-.+.| .|.+-|..... +.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~--~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS--ER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc--hh
Confidence 9999998888532 1 12233343456789999999999999999999 99998876542 12
Q ss_pred EEEeecCCCceEEEEEeCCC----------CeEEEEEcCCeEEE-EECCCCc-------------------------EE-
Q 008393 491 VHELSCNGNKFHSCVFHPTY----------PSLLVIGCYQSLEL-WNMSENK-------------------------TM- 533 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~----------~~l~~~~~dg~I~i-wd~~~~~-------------------------~~- 533 (567)
+..+....-+..++.|-.+. ..+++...++.+.+ -++...+ ..
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~~~d~k~~~~~~~~ 321 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFLGMDRKGRTENDRS 321 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccccCCchhHHHHHHHhccccccccccccc
Confidence 33333334556666665443 33344444431111 1111100 00
Q ss_pred -EeccccCCeeEEEEecCC----CEEEEEECCCcEEEcC
Q 008393 534 -TLTAHEGLIAALAVSTET----GYVASASHDKFVKLWK 567 (567)
Q Consensus 534 -~~~~h~~~V~~l~~spdg----~~l~s~s~Dg~I~iWd 567 (567)
....|...|+.|..-..+ ..+-+++.||.|.|||
T Consensus 322 ~~~~~h~N~i~~l~~~~~~~~~i~~f~t~g~Dg~~viw~ 360 (361)
T KOG1523|consen 322 ARWGAHQNCITSLRPFAGGKGKITKFSTSGLDGKLVIWD 360 (361)
T ss_pred ccchHhHhhhhhhhecccCCcceEEEEecCccceEEEec
Confidence 113466667766653322 2466888999999997
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-14 Score=144.14 Aligned_cols=265 Identities=13% Similarity=0.138 Sum_probs=177.0
Q ss_pred CeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 300 KLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 300 ~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+ .+.+..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec-CCCcceE
Confidence 344 4455689999999999999999987655445578999999999999999999999998 567777764 4457889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----------eeEEEEecCCCEEEEEECC-CeEEEEECCCCeEE
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR 447 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~d-g~I~i~d~~~~~~~ 447 (567)
+++++|+++++++...+.+.++|.++.+.++.+... ...+..++....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999988889999999999999998887532 3456667887877777664 89999997765322
Q ss_pred -EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCC-------------------------------------
Q 008393 448 -LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE------------------------------------- 487 (567)
Q Consensus 448 -~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~------------------------------------- 487 (567)
..............|+|++++++.+... .|-++|..+++.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 2333344667889999999988776533 777777764311
Q ss_pred ---------------CceEEEeecCCCceEEEEEeCCCCeEEEE---E-cCCeEEEEECCCCcEEE-ecc-ccCCeeEEE
Q 008393 488 ---------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMT-LTA-HEGLIAALA 546 (567)
Q Consensus 488 ---------------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~---~-~dg~I~iwd~~~~~~~~-~~~-h~~~V~~l~ 546 (567)
.+.+.++...+.+ ..+..+|+++++++. + ..+.|.++|..+.+... +.. -...+..+.
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 1122233333333 456779999999998 3 34699999999987663 322 223488999
Q ss_pred EecCCCEEEEEECCC--cEEEcC
Q 008393 547 VSTETGYVASASHDK--FVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg--~I~iWd 567 (567)
|+++|+++..+.+|+ .|.|||
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEE
Confidence 999999876655543 588875
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-14 Score=149.42 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=167.6
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++|++.+ +.. ..+....+.+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~-~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEccCCCCCcCCeEECCCCC
Confidence 4789999875543 344556778999999999999887653 35699999986 332 22333334455789999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC-C--eEEEEECCCCeEEEEecCCCCCee
Q 008393 386 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 386 ~li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
.++++.+.+| .|++||+.+++....... ......|+|++..++.++.+ + .|+++|+.+++.. .+..+.....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 599999998876655433 35678899999998887764 3 5666788776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCc
Q 008393 459 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 531 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 531 (567)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999998876643 588999977632 22221 12234568999999999998876 47888997777
Q ss_pred EEEeccccCCeeEEEEec
Q 008393 532 TMTLTAHEGLIAALAVST 549 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~sp 549 (567)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 778888889999999987
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-15 Score=139.69 Aligned_cols=241 Identities=16% Similarity=0.205 Sum_probs=189.8
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc--cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~--h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.....
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 5668999999999999999999999999999999888877653 34589999999999999999999999999998643
Q ss_pred ce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEE------EeCC---eeEEEEecCCCEEEEE
Q 008393 363 YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV------FKGG---TAQMRFQPHLGRYLAA 430 (567)
Q Consensus 363 ~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~------~~~~---~~~~~~~~~~~~l~~~ 430 (567)
.. .............+.|+|....||++.+..+.+.+||++.... +.. +... -..+.|+|.|..+++.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 22 2233345567889999999999999999999999999986432 111 1111 1356799999999998
Q ss_pred ECCCeEEEEECCCCeEE-EEecCCC-------CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------------
Q 008393 431 AAENVVSILDAETQACR-LSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------------- 487 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~-~~~~~h~-------~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-------------- 487 (567)
-....-.+||+-..++. ..+. |. ..+.+++|..|.. +++|+++ .|++|.+.....
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred hccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhC
Confidence 88888888998886544 3333 32 2466788876554 8899999 999999863210
Q ss_pred ------CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 488 ------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 488 ------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
...+..+++|...+..+.|++....|++.+-.+.++||.-
T Consensus 341 ~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred chhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1235678899999999999999999999999999999964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=137.49 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=192.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCCcEEEEEcCCCCceeEEecc
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
-+.|||+|+++|+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++. ...|+.|.+|++..... ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 47899999999999755 888888888776655443 345778899888776554 56788999999987443 445566
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEEEECC---------------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAE--------------- 433 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d--------------- 433 (567)
....+.+++|+|+|++++.+...|-.|.+|.+.+.+.... .+.....++|++++...+..+.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 6788999999999999999999999999999998775533 34556677777776655554431
Q ss_pred ---------------------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-----
Q 008393 434 ---------------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 486 (567)
Q Consensus 434 ---------------------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----- 486 (567)
+.+.+||.--.-.+..+. ..-.+..++|+|.+++|+.|+.| .+||.+--+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123344432221111111 22467889999999999999999 77775432100
Q ss_pred ------------------------------------------C----------CceEEEee------cCCCceEEEEEeC
Q 008393 487 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP 508 (567)
Q Consensus 487 ------------------------------------------~----------~~~i~~~~------~~~~~i~~~~~sp 508 (567)
. ...+..++ ...-.+--++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00011111 1122356689999
Q ss_pred CCCeEEEEEcC--CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 509 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 509 ~~~~l~~~~~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|..++++-... +.+.+||+...+...+.....+|.+..|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99988877654 58999999998888777778899999999998888877766678888
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=150.00 Aligned_cols=279 Identities=23% Similarity=0.258 Sum_probs=200.1
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC---eEEEEeCCCcEEEEEcC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDAD 359 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~---~l~s~s~dg~I~iwd~~ 359 (567)
+.+.+..-..-.|++|+++++... +..|.||...++.++..+.+|...++.+.+.|... ++++++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 333333344567999999888765 67999999999999999999999999999988544 78899999999999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCC---CCeEEEEEeCCCcEEE-EECCCCeeeEE-----E--------eCC--eeEEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRY-WSINNGSCTRV-----F--------KGG--TAQMRF 420 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~---~~~li~s~~~dg~I~i-wd~~~~~~~~~-----~--------~~~--~~~~~~ 420 (567)
. +..++++..+ ..|..+.+.|. ....++.+..|..+.. ......+.... + +.. ...+.+
T Consensus 91 ~-~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~ 168 (792)
T KOG1963|consen 91 D-GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD 168 (792)
T ss_pred C-cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence 7 6777776643 34444444221 1111212222211111 11111111111 0 111 244555
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEE----EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC-CCCCceEEEe
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHEL 494 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~----~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~-~~~~~~i~~~ 494 (567)
++. +.+.....+..+.+|+..+..... .-..|...+++.+++|+++++|++..| .|.+|.--. .........+
T Consensus 169 ~~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 169 NNS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred cCC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 554 566666677788888887754111 112366678999999999999999998 999996543 2333455667
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.=|...|.+++|+++|.+|++||.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|+.|.+
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 77889999999999999999999999999999999997777788899999999999999999999998876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=142.77 Aligned_cols=124 Identities=23% Similarity=0.436 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC---------eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 287 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 287 ~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~---------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
..+|..+.|.++.. .||+|+.|..|++|.+... +....|..|...|+++.|+|+|.+|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 9999999999999987632 2345677899999999999999999999999999999
Q ss_pred EcC--------C------C-CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE
Q 008393 357 DAD--------N------P-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 357 d~~--------~------~-~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~ 411 (567)
... + + ....+.+.+|...|..++|.|++.. +++++-|..+++||+..|..+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec
Confidence 776 1 0 1123456677788888888887654 447777777777777766555443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=143.74 Aligned_cols=274 Identities=14% Similarity=0.162 Sum_probs=206.2
Q ss_pred cCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
.|...-+.|..+|||+|+ |+|.+--.|++||+.+..+.+.-......|.-..++.|-..++.-..|.+|.+..... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 466777889999999976 6677888999999998776665555566777777888877888888888887765542 1
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
...+ .-...-..++++.-.-.|+ .++....|+-++++.|..+..|. +.+.++.+++..+.+++|+.+|.|.+||
T Consensus 127 hy~~--RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYRT--RIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeee--ecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 1111 1223345566665444566 44456789999999999887765 4678889999999999999999999999
Q ss_pred CCCCeEEEEecC------CCC-----CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 441 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 441 ~~~~~~~~~~~~------h~~-----~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.++...+..+.. |.+ .|+++.|+.+|-.+++|+.. .|.|||+++.. ..+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 998766555432 333 39999999999999999988 99999999763 23333344567788889977
Q ss_pred CCCe-EEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 509 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 509 ~~~~-l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+.. .++......++|||-.+++.+........++.+|+-|++.++++|-+++.+..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 6433 33333345889999999999977777777999999999999999988776543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=146.28 Aligned_cols=191 Identities=23% Similarity=0.280 Sum_probs=151.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 369 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~- 369 (567)
.+++|+.+|..|++|+.||+++||++.....+.....|...|.++.|+|||+.|++-+.| ..+||++++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 689999999999999999999999999988888888999999999999999999999999 799999998 44444333
Q ss_pred -cCCCcEEEEEEcCCC---CeE-EEEEeCCCcEEEEECCCCee---eE---EE--eCCeeEEEEecCCCEEEEEECCCeE
Q 008393 370 -GHSASVMSLDFHPNK---DDL-ICSCDGDGEIRYWSINNGSC---TR---VF--KGGTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 370 -~h~~~V~~l~~~p~~---~~l-i~s~~~dg~I~iwd~~~~~~---~~---~~--~~~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
........+.|..++ ..+ ++.-..-+.|+.||+..... ++ .+ ...+.+++.+.+|..++.++.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445667777664 223 33333445677766543222 11 11 2367899999999999999999999
Q ss_pred EEEECCCCeEEEEe-cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 437 SILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 437 ~i~d~~~~~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
.||+..+.+.++.. +.|...|+.+.|+||.+++++.+.+ .+.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998777655 4599999999999999999999988 87777764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=135.48 Aligned_cols=232 Identities=17% Similarity=0.298 Sum_probs=180.3
Q ss_pred ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC-C
Q 008393 327 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-N 403 (567)
Q Consensus 327 ~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~-~ 403 (567)
.-..+|+|.+|++|...+|++.....|.||...... +..+++..|...|+.|+|.|..++++ +|+.|..-++|.. .
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCC
Confidence 345789999999999999999999999999987644 46788999999999999999987766 9999999999999 4
Q ss_pred CCe-----eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE----EEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 404 NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 404 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.++ .+..+....+++.|+|.++.|++++....|.||-.+...- .+.-+.+...|.++.|+|++-+|+.|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 444 2345667889999999999999999999999887765432 2233456788999999999999999999
Q ss_pred C-eEEEEeCC-----CCC----------CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--EEEec
Q 008393 475 D-SVRVWTVG-----SGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLT 536 (567)
Q Consensus 475 d-~I~iwd~~-----~~~----------~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--~~~~~ 536 (567)
| ..+||..- ... -...+.++....+.+..+.|+|+|..|+-.+.|..+.+-|..... ...+.
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 9 88888642 110 012344555667889999999999999999999999999987764 22333
Q ss_pred cccCCeeEEEEecCCCEEEEEECC
Q 008393 537 AHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 537 ~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.-.-+..++.|-.+. .++.+++|
T Consensus 247 ~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 247 TAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred hccCCceeeEeecCC-ceeecCCC
Confidence 333566677775433 34444444
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=146.99 Aligned_cols=242 Identities=15% Similarity=0.196 Sum_probs=163.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee----eeeecccCccEEEEEE-----CCCCCeEEEEeCCCcEEEEEcC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~----~~~l~~h~~~V~~i~f-----sp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+....++-.|++|+..- ...+++|+...+.. +...........|-+| .+.+--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 444555566677776543 45688888763221 1111111222333344 3455578888888889998876
Q ss_pred CCCceeEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE--EEEecCCCEEEEEECC
Q 008393 360 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ--MRFQPHLGRYLAAAAE 433 (567)
Q Consensus 360 ~~~~~~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d 433 (567)
. ....+.+. -....|+|+.|-|.++.+++..-.+|.+++||... ....+. ....+++..+.+....
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22111111 13478999999999999998999999999998721 111111 1122233333332221
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+ ..+..++..+.-..+.|+.++|+|||++||+.+.| .+||||+.+. +.+..++..-+.+.|++|+|||+|
T Consensus 276 s------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 S------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred c------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 1 11113333333345689999999999999999999 9999999765 555556666788999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe
Q 008393 513 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 548 (567)
|++|+.|.-|.||.+.+.+.+ .-.+|..+|+.++|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999988 667999999999998
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=147.45 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=133.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
+.+..|.+.|.|-.|+|||.-|+++|.||.|++|. .+|-...++......|+|++|.|+.+.++.+..+ .+.|=-+..
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~ 175 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAA 175 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeeccc
Confidence 45678999999999999999999999999999996 5677778888888999999999998766665443 366666665
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
...+...+.|.+-|.++.|++.. .+|++|++|-..+|||-...
T Consensus 176 -n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~----------------------------------- 218 (737)
T KOG1524|consen 176 -NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA----------------------------------- 218 (737)
T ss_pred -ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc-----------------------------------
Confidence 34456678899999999999985 58889999999999996422
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
.+++-..|+.+|++++|.|+ +.++.++.+++++=.. ..+.|..++|++||..+++|+..|
T Consensus 219 -----~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 219 -----NLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred -----ccccCChhccceeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCc
Confidence 22233346666677777766 5555555554442221 233456666777776666666666
Q ss_pred eE
Q 008393 521 SL 522 (567)
Q Consensus 521 ~I 522 (567)
.+
T Consensus 279 ~v 280 (737)
T KOG1524|consen 279 QL 280 (737)
T ss_pred eE
Confidence 44
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=145.15 Aligned_cols=233 Identities=16% Similarity=0.220 Sum_probs=167.5
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
...|.+||.+ +.....+..|...+.+..|+|||+.|+..+. +..|++||+.++ .. ..+..+.+.+...+|+|+|
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~~-~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-QR-ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-cE-EEeecCCCcccCcEECCCC
Confidence 3478889885 4445667778889999999999999888764 467999999873 32 3455566778899999999
Q ss_pred CeEEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-C--CeEEEEECCCCeEEEEecCCCCCe
Q 008393 385 DDLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 385 ~~li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
+.++++.+.++. |++||+.++........ ......|+|++..++..+. + ..|+++|+.+++... +..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcc
Confidence 998888777665 77889988776544332 2456789999998887775 2 378899988775543 33344556
Q ss_pred eEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC------CeEEEEEC
Q 008393 458 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNM 527 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d------g~I~iwd~ 527 (567)
....|+|||++|+....+ .|.+||+..+. ...+. ....+..+.|+|||+.|+..+.+ ..|+++|+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 778999999999887643 58888875442 12222 22345677999999998876653 36889999
Q ss_pred CCCcEEEeccccCCeeEEEEecC
Q 008393 528 SENKTMTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 528 ~~~~~~~~~~h~~~V~~l~~spd 550 (567)
.++....+. ..+.+...+|+|-
T Consensus 412 ~g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCceEEcc-CCCCccCcccCCC
Confidence 877665544 3556777888763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-13 Score=123.38 Aligned_cols=231 Identities=16% Similarity=0.236 Sum_probs=163.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCC------CcEEEEEcCCC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 361 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~d------g~I~iwd~~~~ 361 (567)
....++|+-|...+++|.. .-.+||+.+..+.......+.+.+.-+...-..++|+. |+.+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 4456999999999998874 45899999876654444333333222222223345543 3332 4699999443
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeEEEeC---CeeEEEEecCCCE-EEE--EECCC
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLGR-YLA--AAAEN 434 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~~-l~~--~~~dg 434 (567)
..++.++. ...+|.++.+.++ ++++. ..+.|+||... +.+.++.+.. +..-+++.|..+. +++ +-.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 56666665 6788999999876 34433 37899999998 5555555542 2223344444433 322 22368
Q ss_pred eEEEEECCCCeE--EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeC
Q 008393 435 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHP 508 (567)
Q Consensus 435 ~I~i~d~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp 508 (567)
.|.|.|+...+. ...+..|...|.|++++-+|.++|+++.. -|||||..++ ..+.++... ...|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987665 46788999999999999999999999987 6999999888 556565533 45699999999
Q ss_pred CCCeEEEEEcCCeEEEEECCC
Q 008393 509 TYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~ 529 (567)
+..+|++++..|+|.||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-14 Score=146.10 Aligned_cols=232 Identities=17% Similarity=0.143 Sum_probs=166.1
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
..|.+||.+. .....+..+...+.+.+|+||++.|+..+.+ ..|++||+.++ .. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g-~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG-QR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC-CE-EEeccCCCCccCceECCCCC
Confidence 4689999864 4445566677789999999999999888743 46999999863 32 33344455566889999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCCCCee
Q 008393 386 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 386 ~li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
.++++.+.+| .|++||+.+++....... ......|+|++..++.++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998876543332 2356789999998888775 33 578888877754332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCc
Q 008393 459 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 531 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~ 531 (567)
.++|+|||++|+..+.+ .|.+||+.++.. ..+. +......+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999999876532 599999976532 1222 22234456999999998887764 378999997766
Q ss_pred EEEeccccCCeeEEEEec
Q 008393 532 TMTLTAHEGLIAALAVST 549 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~sp 549 (567)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888886
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-16 Score=161.34 Aligned_cols=259 Identities=20% Similarity=0.232 Sum_probs=196.3
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
++..|..+++|...++ .+...++||.+.|+.++.+.+..++|+++.|..|++|.+.++.++..+.+|++.|++|+|+
T Consensus 207 tgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred ecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence 4556777888986665 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCc--eeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGY--SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~ 415 (567)
|-. +.+.||++++||.+-... .-+-.. ....-+.++.|..++..++ |++.|+.-..|.+....+......
T Consensus 284 P~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~li-- 356 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNLLI-- 356 (1113)
T ss_pred ccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccceE--
Confidence 964 778899999999871010 000011 1235566777777766555 999999999998764332211100
Q ss_pred eEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 416 AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 416 ~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+..+.+. ...+++-.+-.+.+|++.++...+.+.+|...+..+.++|-+ .+..+++.| ...|||+-.+.. +.
T Consensus 357 -f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---ik 432 (1113)
T KOG0644|consen 357 -FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---IK 432 (1113)
T ss_pred -EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---ce
Confidence 01111111 344555567789999999999999999999999999999954 455577777 999999987643 33
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.+......+....|+++|..++....-|.++|.....++
T Consensus 433 ~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 433 HYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 333346777888999999999998888999999876554
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=144.22 Aligned_cols=193 Identities=22% Similarity=0.260 Sum_probs=141.2
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 333 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
.+++|+.+|..|++++.||++|||++.+ ...+.....|...|.+|.|+||++.++ +-+.| ..+||+.+++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~la-sig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFLA-SIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEEE-EecCC-ceEEEEeccCchhhhcC
Confidence 7899999999999999999999999876 555666778999999999999987554 77777 89999999885544332
Q ss_pred CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC---CEEEEE--eCC-eEEEEeCCCCC
Q 008393 413 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---ELLASV--SED-SVRVWTVGSGS 486 (567)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g---~~l~s~--s~d-~I~iwd~~~~~ 486 (567)
.. .....+..+.|+.|+ .+++.+ ... .|+.||+....
T Consensus 225 ~~-------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 225 PF-------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred Cc-------------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 10 011223344455444 222222 222 56666654332
Q ss_pred CC--ceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 487 EG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 487 ~~--~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.. -...........|.+++++.+|++++.|+.+|.|-||+..+-+.+ ....|...|+.+.|+||.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 21 122223334557999999999999999999999999999998877 44589999999999999999999888877
Q ss_pred EEE
Q 008393 563 VKL 565 (567)
Q Consensus 563 I~i 565 (567)
+.|
T Consensus 348 ~~v 350 (398)
T KOG0771|consen 348 AAV 350 (398)
T ss_pred eeE
Confidence 665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=135.09 Aligned_cols=261 Identities=13% Similarity=0.193 Sum_probs=195.0
Q ss_pred cCCCCeEEEEEcCCCC--eEEEEeCCCcEEEEeCCCCeeeeee------cccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 285 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~--~lasg~~dg~I~vwd~~~~~~~~~l------~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
.-...|..++|--|++ .|...+.+..+..+.+..+.+...+ ......|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3455677788876654 4444446667777777665554443 3445566666654 2378899999999999
Q ss_pred EcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeEEEeC------------CeeEEE
Q 008393 357 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 419 (567)
Q Consensus 357 d~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--g~I~iwd~~~~~~~~~~~~------------~~~~~~ 419 (567)
....+. ..+..+..+ ..+..+.-++...+++++|+.. ..++|||++..+.+..-+. -.+.+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 988422 222333323 5577788888888899999999 8999999998865554332 234567
Q ss_pred EecC--CCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 420 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 420 ~~~~--~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
|.+. ...|++++.-+.|++||.+.+ +++..+.-.+.+|+++...|+|++|++|..- .+..||++.+.. ....+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--~g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--LGCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--eccccC
Confidence 8777 788999999999999999987 7788888888999999999999999999888 999999987732 223367
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 550 (567)
+..+.+.++..+|.+++|+++|-|..|+|+|+.+.+.+.-..-...+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7788999999999999999999999999999999766533333445666666443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-14 Score=148.39 Aligned_cols=252 Identities=19% Similarity=0.299 Sum_probs=187.9
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC---CCcEEEEEEcC-C
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N 383 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~~p-~ 383 (567)
+..|..||... ..+....-..+.|+|-...++++.....|+|||.+. +..+..|..+ ...|+.+.+.. +
T Consensus 1049 t~~i~~W~~~~------~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF------MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred cccccchHHHH------HhcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence 34466776431 112222456778899888999999888899999997 5556555533 36788888853 3
Q ss_pred CCeEEEEEeCCCcEEEEECCC-----CeeeEEEeC----------CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE
Q 008393 384 KDDLICSCDGDGEIRYWSINN-----GSCTRVFKG----------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~-----~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 448 (567)
...++++|+.||.|+||+--. .+.+..+.+ ....+.|.-..+++++++.-..|+|||..+..++.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 455777999999999997532 223332221 12445688888999999999999999999988777
Q ss_pred EecC-CCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc--eEEEEEeCCCC-eEEEEEcCCeE
Q 008393 449 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL 522 (567)
Q Consensus 449 ~~~~-h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~--i~~~~~sp~~~-~l~~~~~dg~I 522 (567)
.+.. ...-|+++.-+- .|++|++|..| .|++||.+.......+...+.|... |..+.+.+.|- .|++|+.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 6654 344566665443 57899999999 9999999987665667777777776 99999998665 49999999999
Q ss_pred EEEECCCCcEE---Eecccc--C-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 523 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 523 ~iwd~~~~~~~---~~~~h~--~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++||++..... .+..|. + .++++..+++...||+|+. +.|+||+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 99999984322 444444 4 5999999999999999998 8999996
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-12 Score=126.90 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=185.9
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeC----CCcEEEEeCCCC--e--eeeeecccCccEEEEEECCCCCeEEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 347 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----dg~I~vwd~~~~--~--~~~~l~~h~~~V~~i~fsp~~~~l~s~ 347 (567)
.+..+..+. -......+++++++++|.+... ++.|..|++... + .+............++++|++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 344444432 3344557999999999998876 578999987653 3 333444345566789999999999988
Q ss_pred eC-CCcEEEEEcCCCCceeEE---ec----------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeE--
Q 008393 348 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 409 (567)
Q Consensus 348 s~-dg~I~iwd~~~~~~~~~~---~~----------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~-- 409 (567)
.. +|.|.++++...+..... +. .......++.|+|+++.++++.-....|.+|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 75 899999999875543322 11 1235678999999999888777667789999998765 322
Q ss_pred EEe----CCeeEEEEecCCCEEEEEEC-CCeEEEEECC--CCe--EEEEecCC------CCCeeEEEEcCCCCEEEEEeC
Q 008393 410 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 410 ~~~----~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~--~~~~~~~h------~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+. .+...+.|+|++.++++..+ ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 25678999999999888877 7789999887 442 22232211 125778999999999999886
Q ss_pred C--eEEEEeCC-CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEEEC--CCCcEEEec--cccCCeeEEE
Q 008393 475 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 546 (567)
Q Consensus 475 d--~I~iwd~~-~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~ 546 (567)
+ .|.+|++. .......+..+...+.....++++|+|++|+++..+ +.|.+|++ .++...... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 89999994 333456666777667778999999999999998855 58888866 466554322 2334455665
Q ss_pred E
Q 008393 547 V 547 (567)
Q Consensus 547 ~ 547 (567)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=134.09 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=191.6
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC-CCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~-~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+.+..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++.-..+. .....++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 445677889999999999999998889999999999999953 3444433333 34567999999999999999999999
Q ss_pred EEEEEcCCC---CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEE
Q 008393 353 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRY 427 (567)
Q Consensus 353 I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l 427 (567)
+.-+.+... ....+.+..|...|..+-|+-.-+ ++++++.|..+.---.+.+..+..+ ......+.+.-. ..
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999877542 234566778999999999987644 5668888887766555655544332 222222222222 45
Q ss_pred EEEECCCeEEEEE--CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 428 LAAAAENVVSILD--AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 428 ~~~~~dg~I~i~d--~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
+++...|.|.+.. ...-..+.++.+|.+.+.+++|.+...+|.+|..| .|.+||+.-. .....++.+|...+..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence 5555566665544 34557788999999999999999999999999999 9999999643 35667888889999988
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
..-+.-+.+++++.||.|.+|+++..
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 88888889999999999999998754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.8e-13 Score=130.95 Aligned_cols=268 Identities=19% Similarity=0.329 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-----eCC-----CcEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-----SFD-----KTVRVW 356 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-----s~d-----g~I~iw 356 (567)
..++...+++++|+++|.+. +..++|++..++..+.+...- .+.++.|+|.+++|.+= ..+ -.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477889999999998774 778999999888655544433 68999999999988652 112 346788
Q ss_pred EcCCCCceeEEec----------------------------------------cCCCcEEEEEEcCCC-CeEEEE-----
Q 008393 357 DADNPGYSLRTFM----------------------------------------GHSASVMSLDFHPNK-DDLICS----- 390 (567)
Q Consensus 357 d~~~~~~~~~~~~----------------------------------------~h~~~V~~l~~~p~~-~~li~s----- 390 (567)
++++ +.....+. -|...|..+.++|.. ...+++
T Consensus 111 ~vet-~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 111 NVET-GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eecc-ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 8876 32211111 234456666666652 223322
Q ss_pred EeCCCcEEEEECCCCee------eEEEeCCeeEEEEecCCCEEEEEE-C-----------CCeEEEEECCCCeEEEEecC
Q 008393 391 CDGDGEIRYWSINNGSC------TRVFKGGTAQMRFQPHLGRYLAAA-A-----------ENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~-~-----------dg~I~i~d~~~~~~~~~~~~ 452 (567)
.+.-+.|+||....... ..-|+.....+.|++.+.-|++.. . +..++++++....+...+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 23345677777652221 122445566678888776554432 2 2478888888555555554
Q ss_pred CCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEE
Q 008393 453 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 526 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd 526 (567)
..++|.+++|+++|+-++++. .- ++.|||++. .-.+....++-.++-|+|.|++|+.+|-+ |.|.|||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 478999999999998665543 33 899999953 23344456778888999999999998876 6999999
Q ss_pred CCCCcEE-EeccccCCeeEEEEecCCCEEEEEEC------CCcEEEcC
Q 008393 527 MSENKTM-TLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iWd 567 (567)
+.+.+.+ .+.... -+-+.|+|||.+|+|+.. |+.++||+
T Consensus 343 v~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 343 VPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9997766 333322 345789999999998873 68889985
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-13 Score=141.47 Aligned_cols=233 Identities=18% Similarity=0.156 Sum_probs=158.2
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+ +.. ..+....+.+.+..|+|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 467777774 45555566778889999999999999887753 3599999987 332 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEEE--CCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCCCCee
Q 008393 386 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd--~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
.++++.+.++...||. +..+....... .......|+|++..++..+. ++ .|+++++.+++..... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 9888888888766654 54444332222 22456789999998887665 34 4555565655433222 2223345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCc
Q 008393 459 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 531 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 531 (567)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+||++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 68899999999877643 599999987632 12221 22335679999999998887654 57777886554
Q ss_pred EEEeccccCCeeEEEEecC
Q 008393 532 TMTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~spd 550 (567)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 5466667788888899873
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-13 Score=125.10 Aligned_cols=270 Identities=14% Similarity=0.202 Sum_probs=197.7
Q ss_pred CCCeEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg-~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
-..|.-+.|..|..+++++ ..|+.|.+|++...+-...+....+.+..+.|+|||+ .|.+...|-.|.||.+.+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 3566778888888766654 5688999999998888889999999999999999996 5566777999999999874332
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEECCCCeeeE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------------------------DGEIRYWSINNGSCTR 409 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~-----------------------------------dg~I~iwd~~~~~~~~ 409 (567)
.+.-.+..+..++|+|+|....+..-. +..+.+||.--.-.+.
T Consensus 128 --~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 128 --LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred --EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 222234456888899988754432211 2234455432222222
Q ss_pred EEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEE--------------------------------------
Q 008393 410 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-------------------------------------- 449 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-------------------------------------- 449 (567)
.+. -++..+.|+|.+..+++|+.|+.+++.+--+.+....
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 222 3677889999999999999999888765433222111
Q ss_pred ----------------------ec------CCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCC
Q 008393 450 ----------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 450 ----------------------~~------~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
++ ...-.+.-++|++|..++++-.+. .+-+||+... .++.+-...
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk 361 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQK 361 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhc
Confidence 11 011235668999999999998876 6999999764 333444457
Q ss_pred CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 499 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 7899999999999999999989999999988777777666678999999999999999998853
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-14 Score=130.49 Aligned_cols=275 Identities=18% Similarity=0.306 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-----eeeeeccc------------CccEEEEEECCCCC--eEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLATS 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-----~~~~l~~h------------~~~V~~i~fsp~~~--~l~s~ 347 (567)
..-|.++.|..+|.+||||..+|.|.+|.-+... ....+..| ...|..|.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999654322 22333333 34588999998765 67888
Q ss_pred eCCCcEEEEEcCCCCcee----------------------------------EE-eccCCCcEEEEEEcCCCCeEEEEEe
Q 008393 348 SFDKTVRVWDADNPGYSL----------------------------------RT-FMGHSASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~~~----------------------------------~~-~~~h~~~V~~l~~~p~~~~li~s~~ 392 (567)
+.|.+|++|.+...+... +. -.+|.-.|.+|.++.|...++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 899999999886422111 11 126888899999999987666 54
Q ss_pred CCCcEEEEECCCCeeeE---EEe--------CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEE----EEec-----
Q 008393 393 GDGEIRYWSINNGSCTR---VFK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR----LSLQ----- 451 (567)
Q Consensus 393 ~dg~I~iwd~~~~~~~~---~~~--------~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~----~~~~----- 451 (567)
.|-.|.+|+++--..-. .++ .-++...|+|.. +.++..+..|.|++.|++....- ..+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 48899999987433211 112 134566788875 45666777999999999843211 1111
Q ss_pred -------CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCC------------c---eEEEEEeCC
Q 008393 452 -------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN------------K---FHSCVFHPT 509 (567)
Q Consensus 452 -------~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~------------~---i~~~~~sp~ 509 (567)
+--..|..+.|+++|+|+++-..-+|++||+.... +.+.++..|.. . -..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245788999999999998777799999996433 33444433321 1 245789999
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE--Ee--------------------cc-------------ccCCeeEEEEecCCCEE
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM--TL--------------------TA-------------HEGLIAALAVSTETGYV 554 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~--~~--------------------~~-------------h~~~V~~l~~spdg~~l 554 (567)
+.++++|+..+.+++|++..|... ++ .+ ....|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996554321 00 01 01124456899999999
Q ss_pred EEEECCCcEEEc
Q 008393 555 ASASHDKFVKLW 566 (567)
Q Consensus 555 ~s~s~Dg~I~iW 566 (567)
|.+..+. ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-11 Score=123.98 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=179.4
Q ss_pred EEEEeCC----CcEEEEeC--CCCeeeeee-cccCccEEEEEECCCCCeEEEEeC----CCcEEEEEcCCC-Cc--eeEE
Q 008393 302 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 367 (567)
Q Consensus 302 lasg~~d----g~I~vwd~--~~~~~~~~l-~~h~~~V~~i~fsp~~~~l~s~s~----dg~I~iwd~~~~-~~--~~~~ 367 (567)
+++|+.. +.|.+|++ ++++....- .........++++|++++|++... ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556555 68888887 444443221 123445677899999999999877 568999998864 22 2223
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEE---Ee-------------CCeeEEEEecCCCEEEEE
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---FK-------------GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~---~~-------------~~~~~~~~~~~~~~l~~~ 430 (567)
..........++++|+++.++++...+|.|.++++.. +..... +. .+..++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3324455678999999999988877899999999987 443322 21 245689999999998887
Q ss_pred EC-CCeEEEEECCCCe--E--EEEec-CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC-CCCceEEEeecC----
Q 008393 431 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 497 (567)
Q Consensus 431 ~~-dg~I~i~d~~~~~--~--~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~-~~~~~i~~~~~~---- 497 (567)
.. ...|.+|++.... . ...+. .....-+.++|+|++++++...+. .|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 76 5689999987654 2 22222 234567899999999999888866 8999998722 122333333321
Q ss_pred --CCceEEEEEeCCCCeEEEEEc-CCeEEEEECC--CCcEE---EeccccCCeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 498 --GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 498 --~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
......++++|||++|+++.. .+.|.+|++. +++.. .+.......+.++++|+|++|+++.. ++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 125788999999999998875 4689999993 34433 22233445899999999999998874 56788763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=145.44 Aligned_cols=249 Identities=19% Similarity=0.264 Sum_probs=174.1
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCC------ceeEEeccCCCcEEEEEEcCCCCe
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
|+. .|..+..+..|...|..++.++.. .++++|+.||+|++|+...-. ....++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 578888999999999999988765 899999999999999986411 123344446788999999998876
Q ss_pred EEEEEeCCCcEEEEECCCCee-------eEEEe----CCeeEE-EEec-CCC-EEEEEECCCeEEEEECCCCeEEEEecC
Q 008393 387 LICSCDGDGEIRYWSINNGSC-------TRVFK----GGTAQM-RFQP-HLG-RYLAAAAENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~-------~~~~~----~~~~~~-~~~~-~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~ 452 (567)
++ .++.||.|.+.++..... .+..+ +.+..+ ++.. ... .++++...+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 66 568999999999986321 11111 111221 2222 223 677778889999999998766655543
Q ss_pred --CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCC---CeEEEEE--cCCeEE
Q 008393 453 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTY---PSLLVIG--CYQSLE 523 (567)
Q Consensus 453 --h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~---~~l~~~~--~dg~I~ 523 (567)
..+.|++++.+|.+.+++.|+.. .+.+||++-+ ..+.... .+..++..+..+|-. ...++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 45789999999999999999988 9999999865 3333322 334666666666644 3455444 457999
Q ss_pred EEECCCCcEE-Eeccc-------------------cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 524 LWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++.++... .+... .-.....++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988644 11111 11222334444567899999999999998
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=142.07 Aligned_cols=214 Identities=19% Similarity=0.284 Sum_probs=156.1
Q ss_pred eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCcEE
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 398 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~I~ 398 (567)
.....|.+|.+.|+|+.|+.+|.+|++|++|-.+.|||.-..+.....-++|...|.++.|.|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4456788999999999999999999999999999999998644444556799999999999885 467888999999999
Q ss_pred EEECCCCee----------eEEEe---CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEE-------E---EecCCC
Q 008393 399 YWSINNGSC----------TRVFK---GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR-------L---SLQGHT 454 (567)
Q Consensus 399 iwd~~~~~~----------~~~~~---~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~-------~---~~~~h~ 454 (567)
+||+...+. .+.+. ..+..++..|++ ..+.+++.||+|+-||++....- . .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985321 11122 234556777777 67888999999999999873211 0 111112
Q ss_pred CCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCC--------C-------CCceEEEeec-C--------C---CceEEEE
Q 008393 455 KPIDSVCWDPS-GELLASVSED-SVRVWTVGSG--------S-------EGECVHELSC-N--------G---NKFHSCV 505 (567)
Q Consensus 455 ~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~--------~-------~~~~i~~~~~-~--------~---~~i~~~~ 505 (567)
-...|+.++|. ..+|++|+.| ..++||.+.. . ...|+.-+.. | . ..++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 34678899995 4588999999 9999995421 0 0012222211 1 1 1145678
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|+|+|.-|++.-....|+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 9999999998888889999999887644
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-13 Score=140.20 Aligned_cols=221 Identities=18% Similarity=0.232 Sum_probs=151.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEE-EEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~-s~s~dg~I~iw 356 (567)
..+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455778889999999999999887643 359999999886543 333445567899999999886 46778877777
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC--CCCeeeEEE-eC-CeeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KG-GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~--~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~ 432 (567)
.++..+.....+..+...+....|+|||+.+++++..++...+|.+ .++...... .+ ......|+|++..++..+.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6543333455666666667788999999988877665666666654 455433322 22 2345789999999988776
Q ss_pred CC---eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 433 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 433 dg---~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
++ .|.+||+.+++...... . .....+.|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999999887553322 2 334678999999998888754 35555653 2 23334444445566667
Q ss_pred EeC
Q 008393 506 FHP 508 (567)
Q Consensus 506 ~sp 508 (567)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 776
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-12 Score=127.10 Aligned_cols=252 Identities=16% Similarity=0.160 Sum_probs=164.0
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRV 355 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~i 355 (567)
.+.+..+......-..+.|++||+++++++.||.|.++|+.+.+.+.++..-.. ...+++++||+++++++ .++.+.|
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeE
Confidence 356666665544445578999999999999999999999999999999986444 67899999999998776 5899999
Q ss_pred EEcCCCCceeEEecc-------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--EEEeC--CeeEEEEecCC
Q 008393 356 WDADNPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--RVFKG--GTAQMRFQPHL 424 (567)
Q Consensus 356 wd~~~~~~~~~~~~~-------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~--~~~~~--~~~~~~~~~~~ 424 (567)
+|.++ .+.+..+.. ....+..|..++....++++.-+.+.|.+.|....+.+ ..+.. ......|.|++
T Consensus 105 ~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 105 IDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred ecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 99988 555555432 23467777777877767766666688888887765433 22322 34567788888
Q ss_pred CEEEEEEC-CCeEEEEECCCCeEEEEec----------------------------------------------------
Q 008393 425 GRYLAAAA-ENVVSILDAETQACRLSLQ---------------------------------------------------- 451 (567)
Q Consensus 425 ~~l~~~~~-dg~I~i~d~~~~~~~~~~~---------------------------------------------------- 451 (567)
.+++++.. ++.|.++|.++++.+..+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 87766544 5677777777665544321
Q ss_pred ---CCCCCeeEEEEcCCCCEEEEE---eCC--eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEcCC--
Q 008393 452 ---GHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ-- 520 (567)
Q Consensus 452 ---~h~~~V~~l~~sp~g~~l~s~---s~d--~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg-- 520 (567)
..... .-+..+|+++++++. +.+ .|.++|.++. +.+..+.. ....+..+.|+++|++++++..++
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 11112 234558999999988 444 8999999876 45555532 233588999999999888876654
Q ss_pred eEEEEECCCCcEEE
Q 008393 521 SLELWNMSENKTMT 534 (567)
Q Consensus 521 ~I~iwd~~~~~~~~ 534 (567)
.|.+||..+.+...
T Consensus 340 ~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 340 AIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCcEEEE
Confidence 69999999998773
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=121.66 Aligned_cols=228 Identities=13% Similarity=0.212 Sum_probs=165.4
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee-EEeccCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCC
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINN 404 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~ 404 (567)
...++|+.|...+++|..+| .+||+.+--++.. +.+....-.+..+-|- .+.+.+.|+.+ +.|.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence 45589999999999999998 9999998522211 1111111223333333 34566666655 5799999777
Q ss_pred CeeeEEE--eCCeeEEEEecCCCEEEEEECCCeEEEEECC-CCeEEEEecCC--CCCeeEEEEcCCCCEEEEEeCC--eE
Q 008393 405 GSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--SV 477 (567)
Q Consensus 405 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~d--~I 477 (567)
.+++..+ ..++..+.+.++ .++...++.|++|... +.+.++.+... ...+.+++-..+..+||.-+.. .|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7777654 567788888765 5566678899999887 44555555432 2345555544456677777765 79
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCe-EEEEECCCCcEE-Eec--cccCCeeEEEEecCCCE
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMSENKTM-TLT--AHEGLIAALAVSTETGY 553 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-I~iwd~~~~~~~-~~~--~h~~~V~~l~~spdg~~ 553 (567)
.|-|+...... .-..+..|...|.+++++-+|..+++++..|+ |+|||..+++.+ ++. .....|.+++|||++.+
T Consensus 162 Qi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999765321 34677889999999999999999999999995 799999999887 433 34467999999999999
Q ss_pred EEEEECCCcEEEc
Q 008393 554 VASASHDKFVKLW 566 (567)
Q Consensus 554 l~s~s~Dg~I~iW 566 (567)
||++++.|+|.||
T Consensus 241 LavsSdKgTlHiF 253 (346)
T KOG2111|consen 241 LAVSSDKGTLHIF 253 (346)
T ss_pred EEEEcCCCeEEEE
Confidence 9999999999987
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-12 Score=126.84 Aligned_cols=270 Identities=16% Similarity=0.236 Sum_probs=191.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCC---------------CcEEEEeCCCCeeeeeecccCcc--EE-EEEECCCCCeEEEEe
Q 008393 287 TSKVICCHFSSDGKLLATGGHD---------------KKAVLWHTDTLKSKTNLEEHSSL--IT-DVRFSPSMPRLATSS 348 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~d---------------g~I~vwd~~~~~~~~~l~~h~~~--V~-~i~fsp~~~~l~s~s 348 (567)
...|..+.|+|.++||.+=... +.+.+||..++..+..+..-... .+ -+.|+.+.+|+|-..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 3457789999999999885533 35999999999999999877666 66 788998888776553
Q ss_pred CCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeE-EE-----EEeCCCcEEEEECCCCeeeEE---EeCCeeEE
Q 008393 349 FDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDL-IC-----SCDGDGEIRYWSINNGSCTRV---FKGGTAQM 418 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l-i~-----s~~~dg~I~iwd~~~~~~~~~---~~~~~~~~ 418 (567)
...++|+++ +......-+... ...|....|+|.+++- |+ ..+.++.+++|.+..++.+.. ++.....+
T Consensus 151 -~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 151 -GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred -cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 345999997 322221111111 3567888888874332 22 245688999999997766544 44566788
Q ss_pred EEecCCCEEEEEEC-----------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCC
Q 008393 419 RFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGS 484 (567)
Q Consensus 419 ~~~~~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~ 484 (567)
.|.+.+..+++-.. +..++|+++....+.... +-.++|...+|.|.++.+++.+ .. .+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 89999988776432 357888988855444333 5678999999999888777665 45 899999975
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEE--eccccCCeeEEEEecCCCEEEEEE-
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASAS- 558 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s- 558 (567)
. . .+......-..+.|+|.++++++++-+ |.|.+||......+. +.+. ..+-+.|+||+.++.+..
T Consensus 308 N----l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 308 N----L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred c----e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCC
Confidence 3 1 222334445566999999999998877 589999998776553 3332 344567999999887664
Q ss_pred -----CCCcEEEcC
Q 008393 559 -----HDKFVKLWK 567 (567)
Q Consensus 559 -----~Dg~I~iWd 567 (567)
.|..|+||+
T Consensus 380 s~k~~~Dn~i~l~~ 393 (561)
T COG5354 380 SEKLRVDNSIKLWD 393 (561)
T ss_pred CcccccCcceEEEE
Confidence 478899986
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=136.14 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=151.4
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCC--cEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDK--TVR 354 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg--~I~ 354 (567)
+.+..+...+.+.+|+|||+.|+..+. +..|++|++.+++... +......+..+.|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 344556778999999999999987542 4579999998875433 22223335578999999988765 4455 488
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 430 (567)
+||+++ +.. ..+..+...+....|+|+|+.++++...++. |+++|+.++........ ......|+|++..++..
T Consensus 271 ~~d~~t-g~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLAS-GQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCC-CCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 899986 333 4444455677889999999988877665554 55557776654433222 33568899999998887
Q ss_pred ECC---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e---EEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 431 AAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S---VRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 431 ~~d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~---I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
+.+ ..|.+||+.+++... +... .......|+|||++|+..+.+ . +.++++.. .....+..+...+..
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~ 422 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKF 422 (429)
T ss_pred EccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCC
Confidence 654 368899998886543 3321 234467899999999988866 3 67777743 234455566677777
Q ss_pred EEEeC
Q 008393 504 CVFHP 508 (567)
Q Consensus 504 ~~~sp 508 (567)
.+|+|
T Consensus 423 p~Wsp 427 (429)
T PRK03629 423 PAWSP 427 (429)
T ss_pred cccCC
Confidence 78887
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=126.66 Aligned_cols=214 Identities=18% Similarity=0.223 Sum_probs=160.4
Q ss_pred CCccceeccCCccceeeeeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee--------------eec--
Q 008393 264 AGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--------------NLE-- 326 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~--------------~l~-- 326 (567)
+.+.+|..... .....++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++.-...+. .+.
T Consensus 35 G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~ 110 (323)
T KOG0322|consen 35 GIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKK 110 (323)
T ss_pred ceEEEEEeecC---ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccC
Confidence 45677777655 3445566 57788999998887 467777899999999876421110 000
Q ss_pred -------------------------------------ccCccEEEEEECC-CCC--eEEEEeCCCcEEEEEcCCCCc---
Q 008393 327 -------------------------------------EHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY--- 363 (567)
Q Consensus 327 -------------------------------------~h~~~V~~i~fsp-~~~--~l~s~s~dg~I~iwd~~~~~~--- 363 (567)
...+.+.|..+.. +++ +|+.|..+|.|.+||+.++.+
T Consensus 111 ~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~ 190 (323)
T KOG0322|consen 111 PKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ 190 (323)
T ss_pred CCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec
Confidence 0223455555432 233 467788899999999987422
Q ss_pred ------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--e-----eeEEEeCCeeEEEEecCCCEEEEE
Q 008393 364 ------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 364 ------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~-----~~~~~~~~~~~~~~~~~~~~l~~~ 430 (567)
....+..|..+|.++.|.+.-+.=+ +|+.+..+..|++... . .+..-..++..+.+.|+++.++++
T Consensus 191 ~~~~~kv~~~~ash~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA 269 (323)
T KOG0322|consen 191 LPQSSKVESPNASHKQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA 269 (323)
T ss_pred cccccccccchhhccCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec
Confidence 2334457999999999987644444 7778888999988753 2 222334578889999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
+.|+.|++|..++..++..++-|...|.+++|+|+..++|.++.| .|.+|++
T Consensus 270 GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 270 GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999 9999986
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=137.44 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=158.6
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCC
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
.+.+||... ...+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.....++.|+|+|
T Consensus 185 ~l~i~D~~g----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDG----YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCC----CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC
Confidence 445566532 2345566778889999999999999987643 469999998876543 33344455688999999
Q ss_pred CeEE-EEeCCC--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeEEEe-C-C
Q 008393 342 PRLA-TSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK-G-G 414 (567)
Q Consensus 342 ~~l~-s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~--I~iwd~~~~~~~~~~~-~-~ 414 (567)
+.|+ +.+.+| .|++||+.+ +. +..+..+.......+|+|+|+.++++...+|. |+++|+.+++..+... + .
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9775 445555 599999986 33 34555566666789999999988877666655 7777877776544322 2 2
Q ss_pred eeEEEEecCCCEEEEEECCC---eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE 487 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~ 487 (567)
.....|+|++..++....++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ .|.++++..+
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-- 413 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-- 413 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--
Confidence 34578999999988876543 6999999888765 333 22345567999999988877653 5778887432
Q ss_pred CceEEEeecCCCceEEEEEeC
Q 008393 488 GECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp 508 (567)
....+..+...+...+|+|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 2333433445555566665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-13 Score=128.29 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=177.3
Q ss_pred cCccEEEEEECCCCC--eEEEEeCCCcEEEEEcCCCCce-----eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 328 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 328 h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~~~~~~~-----~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
....|..++|.-+++ .|...+.|..+..+.+...+.. +.........|..+.... . .+++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 345577777765544 3444446666777766652221 123344566777777652 2 45588999999999
Q ss_pred ECCCCe-----eeEEEe-CCeeEEEEecCCCEEEE-EECC--CeEEEEECCCCeEEEEecCCC---------CCeeEEEE
Q 008393 401 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGHT---------KPIDSVCW 462 (567)
Q Consensus 401 d~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~-~~~d--g~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~ 462 (567)
..+.+. .+..-. .+...+.-.+....+++ |+.+ +.+.|||++..+.++.-+.-. -+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 222222 34556666666666666 6667 799999999987776654321 24678889
Q ss_pred cCC--CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--Eecc
Q 008393 463 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 537 (567)
Q Consensus 463 sp~--g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~ 537 (567)
-+. ...||+++.- .|++||.+.+ .+++..+...+.++.++...|+++.|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 7889999888 9999999855 4677788888999999999999999999999999999999999887 4788
Q ss_pred ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 538 HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 538 h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+.|++|-.+|...+|++||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999987
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-12 Score=135.06 Aligned_cols=220 Identities=13% Similarity=0.200 Sum_probs=153.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEE-EEeCCCc--
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKT-- 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~-s~s~dg~-- 352 (567)
..+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+..|+|||+.|+ +.+.++.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34556778889999999999999988764 468999999887653 4555666788999999999775 5555655
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYL 428 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 428 (567)
|++||+++ + ....+..+........|+|+|+.++++...+| .|++||+..+....... +......|+|++..++
T Consensus 272 Iy~~d~~~-~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 272 IYTMDLRS-G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred EEEEECCC-C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 77778876 3 33556666667778999999998887665544 68888988776554433 3345678999999998
Q ss_pred EEECC---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-------eEEEEeCCCCCCCceEEEeecCC
Q 008393 429 AAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 429 ~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-------~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
....+ ..|.+||+.++... .+. ....+..+.|+|||++|+..+.+ .|+++|+..+. ...+.. .
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~~-~ 422 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVPT-P 422 (435)
T ss_pred EEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEccC-C
Confidence 87653 36888998665432 332 22356788999999988776542 36667775432 223322 2
Q ss_pred CceEEEEEeC
Q 008393 499 NKFHSCVFHP 508 (567)
Q Consensus 499 ~~i~~~~~sp 508 (567)
..+...+|+|
T Consensus 423 ~~~~~p~Wsp 432 (435)
T PRK05137 423 GDASDPAWSP 432 (435)
T ss_pred CCccCcccCC
Confidence 3345556665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-12 Score=127.58 Aligned_cols=267 Identities=14% Similarity=0.179 Sum_probs=181.7
Q ss_pred CeEEEEEcCCCCeEEEEeC-----------CCcEEEEeCCCCeeeeeeccc--CccEE-EEEECCCCCeEEEEeCCCcEE
Q 008393 289 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLIT-DVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~-----------dg~I~vwd~~~~~~~~~l~~h--~~~V~-~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.|.-+.|||..+||+|-+. ...++|||+.+|...+.+... ...++ -..||.|++|+|.-..++ |.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-is 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-IS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EE
Confidence 4668999999999998652 257999999999999888752 22233 358999999999887765 99
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRY 427 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l 427 (567)
||+..+ -.++..-.-.-..|....|+|.+.-|.+-.-. -..+.+..+.++..+++-. -....+.|...|.+|
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 999875 33222222234568888999986544332221 2356777777777666533 334556788887777
Q ss_pred EEEEC-------C---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCC-CCCCCceEE
Q 008393 428 LAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECVH 492 (567)
Q Consensus 428 ~~~~~-------d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~-~~~~~~~i~ 492 (567)
++-.. . ..+.|+.++....-...-.-...|...+|-|.|+.+++-+.. ++.+|.++ +......+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 66443 1 245566665543322222345778899999999877766543 69999998 344444555
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEE---cCCeEEEEECCC--CcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSE--NKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~I~iwd~~~--~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.+.. ...+.+.|+|.|.++++++ ..|.+.+||+.- .+.+....|. ..+.+.|.|.|+|+++++.-
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeeh
Confidence 5543 5567889999999988875 457999999984 3333444454 46788999999999998853
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-12 Score=133.24 Aligned_cols=231 Identities=19% Similarity=0.204 Sum_probs=159.5
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
...|.++|.+... ...+..+...+...+|+|+|++|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 3468888875433 45555677778999999999999887654 4799999987322 3334455667789999999
Q ss_pred CeEEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEEEEecCCCCCe
Q 008393 385 DDLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 385 ~~li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
+.++++.+.++ .|++||+.++........ ......|++++..++..+.. ..|+++|+.+++.. .+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 98887776554 589999988765443322 23456899999988877653 26888898877644 344345667
Q ss_pred eEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCC
Q 008393 458 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSEN 530 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~ 530 (567)
..+.|+|+|++|+.++.+ .|.+||+.++. ...+.. ........|+|++++|+....++ .+++++....
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 788999999998887754 58889987642 122221 12234558999999998887764 5777776655
Q ss_pred cEEEeccccCCeeEEEE
Q 008393 531 KTMTLTAHEGLIAALAV 547 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~~ 547 (567)
....+..+.+.+..++|
T Consensus 400 ~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 400 FRARLPLGNGDVREPAW 416 (417)
T ss_pred eeeECCCCCCCcCCCCC
Confidence 55455544555655555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=140.14 Aligned_cols=228 Identities=15% Similarity=0.186 Sum_probs=182.9
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
...-..+.|+.+|++|+.|+..|.|..+|+.+ +.....+. -...|.++.|..+. .+|+ ......++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHne-q~~A-VAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNE-QFFA-VAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcch-HHHH-hhhhceEEEecCC-CcEE
Confidence 34456789999999999999999999999998 55444443 45678999998774 4553 4457899999965 4555
Q ss_pred EEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 409 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 409 ~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
+.++ ..+..+.|-|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|..+ +|.+|...+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 5554 356778899997778888889999999999999999998888999999999988888888888 9999998665
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+.+..+.+|.++|.++++.++|.|+++.|.|..|+|||++....+ ++.. .-+...++||..| +|| ++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-eecCCeee
Confidence 667778889999999999999999999999999999999987644 3333 4567788888666 333 44445788
Q ss_pred EcC
Q 008393 565 LWK 567 (567)
Q Consensus 565 iWd 567 (567)
||.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 884
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-14 Score=136.06 Aligned_cols=250 Identities=20% Similarity=0.285 Sum_probs=189.6
Q ss_pred CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCc
Q 008393 318 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGE 396 (567)
Q Consensus 318 ~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~ 396 (567)
.......|..|.+.|..|.|+..|..|++|+.|..|.+||+......+....+|...|..-.|.|. +..-+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 345566788999999999999999999999999999999999866677777899999988888775 3345669999999
Q ss_pred EEEEECCCCee------eEEEeCCeeEEEEecCCC-EEEEEECCCeEEEEECCCCeEEEEe---cCCCC---CeeEEEEc
Q 008393 397 IRYWSINNGSC------TRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWD 463 (567)
Q Consensus 397 I~iwd~~~~~~------~~~~~~~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~---~V~~l~~s 463 (567)
|++=.+..... +....+++..++..|+.. .|++++.|+.+.-+|++.......+ ..+.. ....|+..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99988764332 334567788888888765 4777888999999999987543333 22333 56788999
Q ss_pred CCCC-EEEEEeCC-eEEEEeCCCCCCCc---eEEE------eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-
Q 008393 464 PSGE-LLASVSED-SVRVWTVGSGSEGE---CVHE------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK- 531 (567)
Q Consensus 464 p~g~-~l~s~s~d-~I~iwd~~~~~~~~---~i~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~- 531 (567)
|... .+++++.| .+++||.+.-.... .+.. .......|++++|+.++.-|++...|-.|++|.-.-+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 9554 88899999 99999987542211 1111 11234559999999999999999999999999543221
Q ss_pred -----------EE--EeccccC--CeeEEEE-ecCCCEEEEEECCCcEEEcC
Q 008393 532 -----------TM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 -----------~~--~~~~h~~--~V~~l~~-spdg~~l~s~s~Dg~I~iWd 567 (567)
.+ .+.+|.. .|..+.| -|...|+++|++-|.|.||+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 11 3567765 4667765 68889999999999999996
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-12 Score=131.08 Aligned_cols=232 Identities=15% Similarity=0.087 Sum_probs=160.6
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.|.++|.+.++ ...+..+...+....|+|||+.|+..+.+ ..|.+||+.++ .. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-RR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-CE-EEccCCCCCcCCeEECCCCCE
Confidence 47777876544 45555677789999999999998877644 36899999873 32 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEEEEecCCCCCeeE
Q 008393 387 LICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 387 li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
++++...++ .|++||+.+++....... ......|+|++..++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 688889998875543322 34457899999988877652 368888988876543222 2233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~ 532 (567)
..|+|+|++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.+ ..|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999999887643 588999987632 222 21 1122245899999999887765 3688889876666
Q ss_pred EEeccccCCeeEEEEecC
Q 008393 533 MTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spd 550 (567)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677888888763
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-12 Score=130.15 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=172.8
Q ss_pred ccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEE-EcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 327 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 327 ~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~-~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
++....+.|..+|||.|+ ++|...-.|++||+.+- .+..-......|..+. ++.|-...+ .--.|.+|-+...-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL--SLKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL--SLKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc--eeeeeecccccceeEEEeccchhhhe-EeecCceeeehhhcC
Confidence 477788999999999975 67778889999999862 2222222233343333 333323333 334577777665443
Q ss_pred CeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 405 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
......++.....++++.-...+++++....|+-++++.|..+..|....+.+++|..++...+|++|+.+ .|..||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 33333444455667777767778889999999999999999999998888999999999999999999988 99999998
Q ss_pred CCCCCceEEE---eecCC-----CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccC--CeeEEEEecC--C
Q 008393 484 SGSEGECVHE---LSCNG-----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--T 551 (567)
Q Consensus 484 ~~~~~~~i~~---~~~~~-----~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd--g 551 (567)
+......+.. +..+. ..|+++.|+.+|-.+++|..+|.|+|||++..+.+....|.. +|..+.|-+. .
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 7643322221 11122 238999999999999999999999999999999987777765 6888888665 3
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
..|+|. +...++|||
T Consensus 286 ~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWD 300 (703)
T ss_pred ceEEec-chHHhhhcc
Confidence 556655 456899996
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-12 Score=130.15 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=156.0
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-C--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+....+......|+|+|+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 677778755443 4555667789999999999988876543 3 5888898863 32 222222334457899999999
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-C--CeEEEEECCCCeEEEEecCCCCCeeE
Q 008393 387 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 387 li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
++++.+.++. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 9888777775 88889888765543332 3456789999998887765 2 36888888887654322 12223445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 532 (567)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999998887653 466678766532 11 2211 1122348999999888776543 588889866655
Q ss_pred EEeccccCCeeEEEEec
Q 008393 533 MTLTAHEGLIAALAVST 549 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~sp 549 (567)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=131.93 Aligned_cols=189 Identities=16% Similarity=0.255 Sum_probs=136.2
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeec----ccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~----~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+++--|+.|-..|.|.+.|....+..+.+. .....|+||.|-|.+. .++.+-.+|.+++||.+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---------- 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---------- 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc----------
Confidence 455567778888999988876533222222 2346799999999654 6677778999999987421
Q ss_pred CCcEEEEE--EcCCCCeEEE-EE---eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 372 SASVMSLD--FHPNKDDLIC-SC---DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 372 ~~~V~~l~--~~p~~~~li~-s~---~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
...+... ..+++..+-+ ++ ..++-+.-|-+ -++.+..++|+|++.++++.+.||.++|||..+.+
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~--------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e 323 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI--------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE 323 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeeccccCCccceeEe--------ccccccceeEcCCCceEEEEecCceEEEeeccHHH
Confidence 1111111 1222222211 11 01122333322 23467889999999999999999999999999998
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.+..++.--+...|++|+|||+||++|++| -|.||.+... +.+..-.+|..+|..++|.
T Consensus 324 Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 324 LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---eEEEeccccccceeeEeec
Confidence 887777777889999999999999999999 9999999654 8889999999999999998
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-12 Score=118.95 Aligned_cols=227 Identities=17% Similarity=0.248 Sum_probs=142.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
....+| .+|+++.|.+||..|++++. |..|.|||.+++..+....-..+.++-+.|+||+.+|+.+..|+..++|...
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 344566 79999999999999999875 6789999999988776665566779999999999999999999999999765
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEE-EEECCCeEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL-AAAAENVVSI 438 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~I~i 438 (567)
......+... ..+.|...+|+|.|..++++++..-.|+-....... ..+. .++......+
T Consensus 269 q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~------------------~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 269 QSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGED------------------SVFLRPQSIKRVLLI 329 (445)
T ss_pred ccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCC------------------ccccCcccceeeeee
Confidence 5333333333 345999999999999999988765444333222111 1111 1111222223
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e--------EEEEeCCCCCCCceEEEeecCCCceEEEEEeC-
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S--------VRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 508 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~--------I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp- 508 (567)
-|+..-....--.--.+++.+++|+|.|++||+.-.+ . |.+||.+..........-...+.....+.|+|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 3332111000000123678899999999999988755 2 55677654322121111111122234445555
Q ss_pred --CCCeEEEEEcCCeEEEEEC
Q 008393 509 --TYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 509 --~~~~l~~~~~dg~I~iwd~ 527 (567)
++..|.++=..|.|.-|++
T Consensus 410 ~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 410 KNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccCCcEEEEEeccCceEeeee
Confidence 4455555556666666654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-12 Score=118.17 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEE
Q 008393 453 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 526 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd 526 (567)
..++|.+++|+|+|+.|++.. .+ .|.+||++ .+.+..+. ...+..+.|+|+|++|++++.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999876653 44 89999996 24555553 5677889999999999998754 5799999
Q ss_pred CCCCcEEEeccccCCeeEEEEecCCCEEEEEEC------CCcEEEcC
Q 008393 527 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iWd 567 (567)
+++.+.+....|.. ++.++|+|||++|+++.. |+.++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888876666654 789999999999999874 78888885
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=138.38 Aligned_cols=265 Identities=16% Similarity=0.213 Sum_probs=185.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
-+++.+..+-. +||+.| ..-.|.+||+..+..+..+. .|... .. ..-.+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e--~~-~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGE--GK-VKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhccccccccc--cc-ceeccceEEEEEeecceeecchhh
Confidence 44555555554 466655 46689999998877665443 33000 00 001233555555444344333322
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE-------EEEecCCCEEEEEECC
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAAAE 433 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~d 433 (567)
.....+. ..|....+.-+. ..++....++.+.+||...+.....+.....+ +-++++.-++++++.-
T Consensus 81 --~~~~~~s---~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 --QIIERFS---DWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred --hhhhhcc---ccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1122222 223333333333 34556677889999999988777665543322 2245555567777789
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+.|.+|+......-..+.+|++.|.++.|+.||.++++.++| .+++|++.+.+... ...-+|...+..|+|.|+ +
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 999999987544444789999999999999999999999999 99999998875433 456678999999999999 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccccC-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++++.|-+.++|+........+..|.+ .|..++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 9999999999999877666657777764 699999999999999999999999996
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-10 Score=108.89 Aligned_cols=286 Identities=15% Similarity=0.135 Sum_probs=193.5
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCC--Ceeeee--ecccCccEEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDT--LKSKTN--LEEHSSLITDV 335 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~--~~~~~~--l~~h~~~V~~i 335 (567)
...+.+|++.+...-.....+-.+.+.++-++|++++++|.++.. +|.|..|.++. |++... .......-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 345666666532111122223356778889999999999988764 47888887764 444322 22223334889
Q ss_pred EECCCCCeEEEEeC-CCcEEEEEcCCCCceeE--EeccCCCc----------EEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 336 RFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 336 ~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~--~~~~h~~~----------V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
++++++++|+++.. -|.|.++-+...+.... ....|.+. +.+..|.|+++++++..-.--.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998876 57899999976554322 22335555 8899999999877755545568999999
Q ss_pred CCCeeeEEE----e--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCC-eEEEEecC---------CCCCeeEEEEcCC
Q 008393 403 NNGSCTRVF----K--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPS 465 (567)
Q Consensus 403 ~~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~-~~~~~~~~---------h~~~V~~l~~sp~ 465 (567)
..++....- + .+...+.|+|++...++.++ +++|.+|..... ..+..+.. .......|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 987754332 2 35678999999998888877 899999988763 22222211 2345678999999
Q ss_pred CCEEEEEeCC--eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECC--CCcEEEec--c
Q 008393 466 GELLASVSED--SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS--ENKTMTLT--A 537 (567)
Q Consensus 466 g~~l~s~s~d--~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~--~~~~~~~~--~ 537 (567)
|++|+++..+ .|.+|.+.... ....+.....++.....+.|++.+++|+++..++ .|.+|... +|+...+. .
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~ 334 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYA 334 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccccc
Confidence 9999999876 78888886542 2344444455555578889999999999998875 67777654 55544222 2
Q ss_pred ccCCeeEEEEe
Q 008393 538 HEGLIAALAVS 548 (567)
Q Consensus 538 h~~~V~~l~~s 548 (567)
......||.|.
T Consensus 335 ~~p~Pvcv~f~ 345 (346)
T COG2706 335 VVPEPVCVKFL 345 (346)
T ss_pred CCCCcEEEEEc
Confidence 33445566553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-10 Score=114.22 Aligned_cols=256 Identities=10% Similarity=0.080 Sum_probs=167.7
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC----------CCcEEEEEcCCCCceeEEeccC-------
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGH------- 371 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~h------- 371 (567)
+.|.|.|..+++.+.++..-..+- .+ ++||++.|+++.. +..|.+||..+ .+.+..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 899999999999998887543332 24 9999998877765 78899999998 5555555421
Q ss_pred CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCC-CeE-EE
Q 008393 372 SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 448 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~-~~ 448 (567)
......++++|+|+.++++--. +..|.++|+.+++.+..+.-+.....+-.....+.+.+.|+.....-+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 2233478999999988866544 89999999999999988875443333332223333444555444433222 221 11
Q ss_pred E---ecCCCCCeeE-EEEcC-CCCEEEEEeCCeEEEEeCCCCCC--CceEEEeec-------CCCceEEEEEeCCCCeEE
Q 008393 449 S---LQGHTKPIDS-VCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 449 ~---~~~h~~~V~~-l~~sp-~g~~l~s~s~d~I~iwd~~~~~~--~~~i~~~~~-------~~~~i~~~~~sp~~~~l~ 514 (567)
. +.+...++.. -.|.+ +|++++...++.|.+.|+..... ...+..+.. ....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1110111100 13455 88888888888999999754321 112222211 122344489999999999
Q ss_pred EEE----------cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEEEcC
Q 008393 515 VIG----------CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 515 ~~~----------~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iWd 567 (567)
+.. ..+.|.++|..+++.+....-...+..++++||++ +|++.. .++.|.+.|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 853 12489999999999886555566899999999999 777666 567788765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-11 Score=123.41 Aligned_cols=236 Identities=16% Similarity=0.155 Sum_probs=156.6
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE---EEEeCCC--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL---ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 383 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l---~s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~ 383 (567)
..|.+.|.+.+.. ..+......+..-+|+|||+.+ ++...+| .|.+.++.++. ...+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCC
Confidence 4677777765544 3455455667888999999752 3444444 47777887632 2333334555667899999
Q ss_pred CCeEEEEEeCCC----cEEEEECCCC---eeeEEEeC---CeeEEEEecCCCEEEEEEC-CC--eEEEEECCC-CeEEEE
Q 008393 384 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN--VVSILDAET-QACRLS 449 (567)
Q Consensus 384 ~~~li~s~~~dg----~I~iwd~~~~---~~~~~~~~---~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~-~~~~~~ 449 (567)
|+.++++...+| .+.+|++..+ ........ ......|+|++..++..+. ++ .|+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 999988775433 3444777653 33333322 2356789999998887764 45 455556543 233444
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeE
Q 008393 450 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 522 (567)
Q Consensus 450 ~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I 522 (567)
+..+...+....|+|||+.|+..+.+ .|.+||+.+++. ..+......+....|+|||+.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 55455667789999999988877642 699999987632 2222223456678999999988876543 479
Q ss_pred EEEECCCCcEEEeccccCCeeEEEEecCC
Q 008393 523 ELWNMSENKTMTLTAHEGLIAALAVSTET 551 (567)
Q Consensus 523 ~iwd~~~~~~~~~~~h~~~V~~l~~spdg 551 (567)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999988877666666777888898753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=114.45 Aligned_cols=148 Identities=13% Similarity=0.281 Sum_probs=110.8
Q ss_pred EEEEECCCCCeEEEEeC----------CCcEEEEEcCCCCceeEEecc-CCCcEEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 008393 333 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 400 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~li~s-~~~dg~I~iw 400 (567)
..+.|+++|.+|++-.. -+...||.++.....+..+.- ..+.|.+++|+|+++.+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 134566666543444444432 34579999999999887644 4567899999
Q ss_pred ECCCCeeeEEEe-CCeeEEEEecCCCEEEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--
Q 008393 401 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 474 (567)
Q Consensus 401 d~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-- 474 (567)
|++ ++.+..+. .....+.|+|+|..+++++. .|.|.+||.++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 45778999999999999875 4679999999998887765 3 34789999999999999873
Q ss_pred ----C-eEEEEeCC
Q 008393 475 ----D-SVRVWTVG 483 (567)
Q Consensus 475 ----d-~I~iwd~~ 483 (567)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 5 78999984
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-11 Score=123.50 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=145.5
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCCc--EE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VR 354 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg~--I~ 354 (567)
+.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +...........|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3455567788899999999999876543 358899998876532 2222333457899999998765 456665 77
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeEEE-eCC-eeEEEEecCCCEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~ 430 (567)
+||+++ +. ...+..+...+...+|+|+++.++++...++ .|+++|+.+++..... .+. .....|+|++..++..
T Consensus 290 ~~dl~t-g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIAT-KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 778876 32 3455556666778999999998887776554 4677788777655432 222 2346899999998887
Q ss_pred ECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 431 AAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 431 ~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
..+ + .|.++|+.+++... +... .......|+|||++|+..+.+ .+++++.. + .....+......+..
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~ 441 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKS 441 (448)
T ss_pred EecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCC
Confidence 663 3 56778988876543 2222 122345899999988776643 36777763 3 233444444455666
Q ss_pred EEEeC
Q 008393 504 CVFHP 508 (567)
Q Consensus 504 ~~~sp 508 (567)
.+|+|
T Consensus 442 p~Wsp 446 (448)
T PRK04792 442 PAWSP 446 (448)
T ss_pred CccCC
Confidence 67776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=120.48 Aligned_cols=211 Identities=12% Similarity=0.116 Sum_probs=138.7
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe--EEEEEeCCC--cEEEEECCCCeee--EEEeCCeeEEEEecCCC
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCT--RVFKGGTAQMRFQPHLG 425 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~--li~s~~~dg--~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~ 425 (567)
.|.+.|.+. ...+.+......+.+-.|+|||+. ++++...++ .|++.++.+++.. ..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566667664 333455556667788899999976 333554443 5888899877644 33556667789999999
Q ss_pred EEEEEEC-CC----eEEEEECCCC---eEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C---eEEEEeCCCCCCCceEEE
Q 008393 426 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 426 ~l~~~~~-dg----~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d---~I~iwd~~~~~~~~~i~~ 493 (567)
.++.... +| .+.+|++..+ +.......+.......+|+|||+.|+..+. + .|+++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333344567899999998887764 2 35555553211 12333
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC-C--CcEEEc
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLW 566 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-D--g~I~iW 566 (567)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 43444566778999999999887654 3799999999988766655556788999999998875443 2 345554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-11 Score=122.82 Aligned_cols=220 Identities=19% Similarity=0.210 Sum_probs=148.6
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCC--cE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 353 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg--~I 353 (567)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677889999999999999876644 369999998876543 3333344567899999998874 44455 58
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeEEEe-C-CeeEEEEecCCCEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~ 429 (567)
++||+++ +. ...+..+........|+|+++.++++...++ .|+++|+.+++..+... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778888877544332 2 2345689999999888
Q ss_pred EECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 430 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 430 ~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
...+ + .|.++|+.+++....... .......|+|||++|+..+.+ .|.++++... ....+......+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 2 588999988765432222 223356899999988877643 4777777432 2223333344455
Q ss_pred EEEEeC
Q 008393 503 SCVFHP 508 (567)
Q Consensus 503 ~~~~sp 508 (567)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 556665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=120.96 Aligned_cols=202 Identities=16% Similarity=0.238 Sum_probs=144.9
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 427 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--g~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l 427 (567)
.|.++|.+. ...+.+..+...+...+|+|+|+.++++...+ ..|++||+.+++.... +.+....++|+|++..+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577778764 33455556777899999999999888665433 5799999998865433 33445678899999888
Q ss_pred EEEEC-C--CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 428 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 428 ~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
++... + ..|++||+.++... .+..+........|+|||+.|+..+.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76544 3 36999999887544 344454555678999999988876643 58888886542 2334444556
Q ss_pred eEEEEEeCCCCeEEEEEcCC---eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 501 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
.....|+|++++|+.+..++ .|++||+.++....+... .......|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 67789999999999988776 899999988766544432 2345678999999988877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-09 Score=103.90 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=156.9
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC----------CCcEEEEeCCCCeeeeeecccC----
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS---- 329 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----------dg~I~vwd~~~~~~~~~l~~h~---- 329 (567)
..+.+.|..+. +.+..+..-..+-. + ++|||+.|+++.. +..|.+||..+++.+..+..-.
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 34455555554 33444443223322 4 9999998887765 7899999999999998887422
Q ss_pred ---ccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 330 ---SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 330 ---~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..-..++++|||++|++... +..|.+.|+.+ ++.+..+.-. +...-+..... ..++ - +.||......+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~e~-~~~~-~-~~Dg~~~~v~~d~ 176 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTAND-TFFM-H-CRDGSLAKVGYGT 176 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEecCC-ccEE-E-eecCceEEEEecC
Confidence 23447899999999998763 68899999998 5555554421 11111222211 1111 1 1244433333222
Q ss_pred -Cee-e---EEEeCCe----eEEEEecCCCEEEEEECCCeEEEEECCC-----CeEEEEecC-------CCCCeeEEEEc
Q 008393 405 -GSC-T---RVFKGGT----AQMRFQPHLGRYLAAAAENVVSILDAET-----QACRLSLQG-------HTKPIDSVCWD 463 (567)
Q Consensus 405 -~~~-~---~~~~~~~----~~~~~~~~~~~l~~~~~dg~I~i~d~~~-----~~~~~~~~~-------h~~~V~~l~~s 463 (567)
++. . ..|.... ..-.|.+.++..+..+.+|.|++.|+.. .+....+.. ..+.+.-++++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 110 1 1111100 0014456334444445559999999544 333332221 22334459999
Q ss_pred CCCCEEEEEe----------C-CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEE-cCCeEEEEECCCC
Q 008393 464 PSGELLASVS----------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSEN 530 (567)
Q Consensus 464 p~g~~l~s~s----------~-d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~ 530 (567)
++++.++... . +.|.++|..++ +.+..+.. +..+..++++||++ +|++.. .++.|.++|..++
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 9999888743 1 27999999776 56666554 56889999999999 777776 4678999999999
Q ss_pred cEEE
Q 008393 531 KTMT 534 (567)
Q Consensus 531 ~~~~ 534 (567)
+.+.
T Consensus 333 k~i~ 336 (352)
T TIGR02658 333 KELS 336 (352)
T ss_pred eEEe
Confidence 8773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=117.49 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=153.0
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeecc---cCccEEEEEE------CC--------------CCCeEEEEeCCCcE
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRF------SP--------------SMPRLATSSFDKTV 353 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~---h~~~V~~i~f------sp--------------~~~~l~s~s~dg~I 353 (567)
|-+.++|....||.+++|+..+++....+.. -++..++..| +| +...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999998887776652 2344555555 22 23367888889999
Q ss_pred EEEEcCCCCceeEEe--ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEE
Q 008393 354 RVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 428 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 428 (567)
.+|++.. ++....+ .+|.+.|.++.++.+- ..|++++.|+.+..|+...+..++.++. ....++++|+++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 4444444 4799999999988764 4677999999999999999999988875 457789999988887
Q ss_pred EEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-----CCEEEEEeCC--eEEEEeCCCC-CCCceEEEeecCCCc
Q 008393 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGSG-SEGECVHELSCNGNK 500 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~l~s~s~d--~I~iwd~~~~-~~~~~i~~~~~~~~~ 500 (567)
+++ +.|++||+++++.+..|.+|.++|.++.|-.+ |++++++... .+.+|-++.. +.....+.+.....+
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dip 238 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIP 238 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCC
Confidence 766 78999999999999999999999999999876 7777765543 6888877652 222333444444444
Q ss_pred e
Q 008393 501 F 501 (567)
Q Consensus 501 i 501 (567)
+
T Consensus 239 v 239 (541)
T KOG4547|consen 239 V 239 (541)
T ss_pred e
Confidence 3
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=112.62 Aligned_cols=253 Identities=13% Similarity=0.065 Sum_probs=161.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE--
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 375 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V-- 375 (567)
++..+++++.++.+..+|.++|+.+............... .+..++.++.+|.|+.||.++ ++.+-.+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4668888889999999999999998776543321111122 245777888899999999987 44443333222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----e------EEE--EecCCCEEEEEECCCeEEEEE
Q 008393 376 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 376 ---~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~------~~~--~~~~~~~l~~~~~dg~I~i~d 440 (567)
.+..+. + . .++.+..++.+..+|.++++.+....... . .+. ....++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111222 2 3 45577788999999999998775543110 0 000 111357888888999999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEc
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.++++.+...... ....... ++..++.++.+ .|..+|..+++ .+..... .........+ .+.+|++++.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999888776521 1122222 45567777777 99999998773 3333311 1111222222 4568999999
Q ss_pred CCeEEEEECCCCcEE-EeccccCCe-eEEEEecCCCEEEEEECCCcEEEcC
Q 008393 519 YQSLELWNMSENKTM-TLTAHEGLI-AALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 519 dg~I~iwd~~~~~~~-~~~~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|.|+++|..+++.+ .+..+...+ .+..+. ++ .|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 999999999999887 454444333 333333 33 577889999998763
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=109.31 Aligned_cols=240 Identities=18% Similarity=0.207 Sum_probs=165.3
Q ss_pred CCCCeEEEEEcC---CCC-eEEEEeCCCcEEEEeCCCCeeeeeecccC------ccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 286 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 286 h~~~V~~l~~s~---dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~------~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
-+..+..+.|.. +|. .|+-+..+|.|.+|..........|++-. ....++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345556666653 444 55667778999999876544444444321 12457889999999999999999985
Q ss_pred EEcCC-CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEeCCeeEEEEecCCCEEEEEECC
Q 008393 356 WDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 356 wd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
-+... .-+.+..++.|...++...|+.....++++|+.|+.+..||++..+ ++..
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----------------------- 204 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----------------------- 204 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee-----------------------
Confidence 55443 1233457889999999999998888899999999999999998322 1110
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
..+-|...|.+|.-+| .+.+|++|+.| .|++||.++.. +.+..-. ..+.|+.+.++|...
T Consensus 205 ---------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~-v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 205 ---------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAK-VGGGVWRIKHHPEIF 266 (339)
T ss_pred ---------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCc-cccceEEEEecchhh
Confidence 1233778888888776 67799999999 99999998543 2333222 247899999999643
Q ss_pred -eEEEEEcCCeEEEEECCCCcEE------EeccccCCeeEEEEecCCCEEEEEE-CCCcEE-Ec
Q 008393 512 -SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 566 (567)
Q Consensus 512 -~l~~~~~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~-iW 566 (567)
.|++++..+..+|.+...+... ....|.+.+..-.|.....+||||+ .|..++ +|
T Consensus 267 ~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 267 HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 4455555566677766554321 4456777777777755556788876 577755 77
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-10 Score=117.83 Aligned_cols=273 Identities=18% Similarity=0.261 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---------------eeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---------------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.....|++|+....++|+||.||.++|..+.+. ..-.++.+|.+.|.-+.|+.+...|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999999999999999999999987632 12356789999999999999999999999999
Q ss_pred cEEEEEcCCCCceeEEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEeC-CeeEEEEecCCCEEE
Q 008393 352 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRYL 428 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~l~ 428 (567)
.|.||-+-.+..+-..+ ....+.|.+++|..+|..+. ....||.|.+=.++..+.- +.+++ ....+.|+++...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIc-IvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKIC-IVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEE-EEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999988744433222 23456789999999987654 6778999888777654432 23333 345678999999999
Q ss_pred EEECCCeEEEEECCCC-------eEEEE----ecCCCCCeeEEEEc--------CCCCEEEEEeCC-eEEEEeCCCCCCC
Q 008393 429 AAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSEG 488 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~-------~~~~~----~~~h~~~V~~l~~s--------p~g~~l~s~s~d-~I~iwd~~~~~~~ 488 (567)
.+-.+|.+.+||.... .+... +......|-.++|. |+...|+.+..+ .+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999997643 12111 11222346667774 467788888877 7776655443332
Q ss_pred ceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---------eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 489 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 489 ~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
..+. .+-.+..+.|+++|..|+++|.+. .|.+|..-....-++......|++++|--.|-.+|.+ .
T Consensus 253 vv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 253 VVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred eEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 2222 246788889999999999998752 5777765544444777778889999997777666655 3
Q ss_pred CCcEEE
Q 008393 560 DKFVKL 565 (567)
Q Consensus 560 Dg~I~i 565 (567)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 566654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=121.76 Aligned_cols=277 Identities=18% Similarity=0.242 Sum_probs=192.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-------CCeeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-------~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.+..+.||..+|..++--.+.+-+++++.|++|++|.++ +..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345788999999999888888899999999999999986 234677888999999999999988887765 77
Q ss_pred cEEEEEcCCCCceeEEe-----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--------CCeeEE
Q 008393 352 TVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQM 418 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--------~~~~~~ 418 (567)
-|.+||.-- +..+... .+..+.|.|+.- -+...+++.|+...+|+++|.+..+....++ +-+.++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999764 3322211 122234444432 1234455556889999999999988765553 235778
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEE-EeCCCCCCCceEEEeec
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSC 496 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~i-wd~~~~~~~~~i~~~~~ 496 (567)
+..+.|++++++-.+|.|.+.|.++|+.+..+...+.....++- |....|+....| .+.+ |..-.+ ......+.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kp 958 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKP 958 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence 89999999999999999999999999998887765555555543 556677777777 7777 876544 22222222
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC-------cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~-------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
...+.. -.-.-|..|++......+.+|.-... ..+.-....+..++++.-|-..-+..|.+.|.|.+
T Consensus 959 ppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 122211 11223455666666667777743221 12233345677888888887777778888888876
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-09 Score=98.17 Aligned_cols=259 Identities=11% Similarity=0.116 Sum_probs=177.1
Q ss_pred CCcEEEEeCCCCeee---eeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeEEe---ccCCCcEEEE
Q 008393 308 DKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTF---MGHSASVMSL 378 (567)
Q Consensus 308 dg~I~vwd~~~~~~~---~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l 378 (567)
+.-|++|++++..-. ..+-.+....+-|+|+|+.++|+++.. +|.|..|.++.....+..+ .....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743221 222356777899999999999988865 4778888887532222222 1122334789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEE---E------------eCCeeEEEEecCCCEEEEEEC-CCeEEEEEC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F------------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDA 441 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~---~------------~~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~ 441 (567)
++++++..++++...-|.|.++-+.. |..... + ..+.....+.|++.++++... ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432221 1 123566789999888888776 569999999
Q ss_pred CCCeEEEEec---CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC-CCCceEEEeec------CCCceEEEEEeCC
Q 008393 442 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 509 (567)
Q Consensus 442 ~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~-~~~~~i~~~~~------~~~~i~~~~~sp~ 509 (567)
..++....-. .....-+.|.|+|++++.++.++= +|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 233456789999999998888764 8999999763 22233333221 2445677899999
Q ss_pred CCeEEEEEcC-CeEEEEECCC--CcEE---EeccccCCeeEEEEecCCCEEEEEECC-CcEEEc
Q 008393 510 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 566 (567)
Q Consensus 510 ~~~l~~~~~d-g~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW 566 (567)
|++|+++... ..|.+|.+.. ++.. ....+....+.+.|++.+++|+++..| ..|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999888653 3788887754 3322 223344458899999999999998865 346655
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=117.68 Aligned_cols=202 Identities=16% Similarity=0.214 Sum_probs=145.2
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~ 415 (567)
|...++|....||.++|||... +.....|.. -.+..++..|. + +.. +...+.- .-.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w~------L-~~~-~s~~k~~------------~~~ 61 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKWG------L-SAD-YSPMKWL------------SLE 61 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEEE------E-Eec-cchHHHH------------hHH
Confidence 3456889999999999999987 333332221 12223333332 1 110 0000000 000
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.....+.+...++.|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.| .+..|+.... ..++
T Consensus 62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~ 138 (541)
T KOG4547|consen 62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIR 138 (541)
T ss_pred HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeee
Confidence 001122334567777889999999999999888886 489999999999999999999999 9999999665 7788
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecC-----CCEEEE-EECCCcEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVKL 565 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd-----g~~l~s-~s~Dg~I~i 565 (567)
........+.+++++||+..+++++ +.|++||+++++.+ ++.+|.++|+++.|..+ |.++.+ +..+..|.+
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 8888888999999999999888876 58999999999988 89999999999999877 666554 444555666
Q ss_pred c
Q 008393 566 W 566 (567)
Q Consensus 566 W 566 (567)
|
T Consensus 217 w 217 (541)
T KOG4547|consen 217 W 217 (541)
T ss_pred E
Confidence 6
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=122.68 Aligned_cols=278 Identities=15% Similarity=0.266 Sum_probs=194.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeecc-cCccEEEEEECCCC--CeEEEEeCCCcEEEEEcCCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~-h~~~V~~i~fsp~~--~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.+++.++.++|.|+-+|.++.-|.+ +.|++ .+....-+.. ..-.|-.+.|++.. .+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 4567789999999999999876644 44554 3444333332 12246677887743 355555555557789986432
Q ss_pred --ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEE---EeCCeeEEEEecCCCEEEEEECCCeE
Q 008393 363 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 363 --~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
..-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +.. .......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 334566789999999999999999999999999999999998653 332 33567889999999999999999999
Q ss_pred EEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 437 SILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 437 ~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.+||++.+ .++..+++|...|+.+.|..- ...+.+++.| +|+.||..... +.-........++..-.+-|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt--~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST--TESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc--cccceeccccCcceeccccccCcee
Confidence 99999987 778889999999999998762 2356667777 99999997542 2222223345566666777755433
Q ss_pred EEE--EcCCeEEEE---------ECCCCc--EEEeccccCCeeEEEEecCC----------CEEEEEECCCcEEEcC
Q 008393 514 LVI--GCYQSLELW---------NMSENK--TMTLTAHEGLIAALAVSTET----------GYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~--~~dg~I~iw---------d~~~~~--~~~~~~h~~~V~~l~~spdg----------~~l~s~s~Dg~I~iWd 567 (567)
++- -.+..+.++ +..++. ..++.+|...|..+.|-..+ -.|+|-+.|..+|+|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 322 222233333 333332 33888999988877773322 1499999999999993
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-09 Score=105.20 Aligned_cols=270 Identities=12% Similarity=0.193 Sum_probs=174.7
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--e
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--R 343 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~ 343 (567)
..+|+..++.. ...+......-++..|+.|..+.|-- ..+.+.+|+..+.+.+. -+-|...|+.+.++|.+. .
T Consensus 107 ~~v~~vet~~~---~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 107 VLVYNVETGVQ---RSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred eeeeeecccee---hhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcccee-eeeeccceeeEEecCCCCCce
Confidence 35777766422 12222222222689999988654432 35789999988744332 223677899999999743 3
Q ss_pred EEE-----EeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCC
Q 008393 344 LAT-----SSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNG 405 (567)
Q Consensus 344 l~s-----~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-----------dg~I~iwd~~~~ 405 (567)
+|+ .+.-..|+||.+...+. .+..-.-....=..+.|++-|..|++..+. ..++++.++...
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 333 24456799998863111 111111112223457788777766654432 246888888855
Q ss_pred eeeEEE--eCCeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eE
Q 008393 406 SCTRVF--KGGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SV 477 (567)
Q Consensus 406 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I 477 (567)
.+.-.+ .+++.++.|++.+..++++.. -..+.|||++.. ++..+ ..++-+++-|+|.|++|+.++-+ .|
T Consensus 262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCce
Confidence 554444 478999999999987766554 689999998754 33333 45777889999999999998866 59
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc------CCeEEEEECCCCcEEEeccccCCeeEEEEec
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 549 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 549 (567)
.|||+.+. +++..+... ..+-+.|+|||.+|+++.. |+.++||++....... .........+.|-|
T Consensus 339 EvwDv~n~---K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 339 EVWDVPNR---KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP 410 (566)
T ss_pred EEEeccch---hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence 99999764 666666543 3455699999999999876 5789999986544331 11111456666654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=122.36 Aligned_cols=198 Identities=17% Similarity=0.268 Sum_probs=155.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc----EEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~----V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.+.|....+..+.+.++.+..++.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 444555777778889999999999999999887777666533322 2223446666789999999999999998534
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
... .+.+|.+.|.++.|+-+|. +++++++|..+++|++++.+...
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~--------------------------------- 211 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLG--------------------------------- 211 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccC---------------------------------
Confidence 433 6889999999999999976 55599999999999999876432
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-CceEEEEEeCCCCeEEEEEcCC
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg 520 (567)
...-+|...|+.++|.|+ .++++++| +.++|+.+. ..+..+..|. ..+..++..++...+++++.|+
T Consensus 212 -----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 212 -----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred -----cccccccceeEEEEeccc--eeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 134469999999999998 89999999 999997643 3444555553 4589999999999999999999
Q ss_pred eEEEEECCCC
Q 008393 521 SLELWNMSEN 530 (567)
Q Consensus 521 ~I~iwd~~~~ 530 (567)
.+++|++...
T Consensus 281 ~lk~~~l~~r 290 (967)
T KOG0974|consen 281 TLKLWDLNGR 290 (967)
T ss_pred chhhhhhhcc
Confidence 9999998653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-09 Score=105.28 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=186.9
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC------------
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK------------ 351 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg------------ 351 (567)
..-.-++..+.|||.|++|++... ..|.+|+...+..+..+. | ..|..+.|+|.++||.+=+..+
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cccCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 335668889999999999998754 458899888776555554 2 3499999999999999865433
Q ss_pred ---cEEEEEcCCCCceeEEeccCCCc--EE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEEe-CCeeEEEE
Q 008393 352 ---TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQMRF 420 (567)
Q Consensus 352 ---~I~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~-~~~~~~~~ 420 (567)
.+.+||+.+ +..+..+.....+ .. -+.|+-+..+.+-. ....++|+++ ++.. .+.++ .++....|
T Consensus 106 ~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 106 SKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 499999998 7777777766555 44 57777775544323 2457999997 3322 22333 46677788
Q ss_pred ecCCCE--EEEE-----ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC------------CeEEEEe
Q 008393 421 QPHLGR--YLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE------------DSVRVWT 481 (567)
Q Consensus 421 ~~~~~~--l~~~-----~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~------------d~I~iwd 481 (567)
+|.++. ++.- ...+.+++|.+..+..+.+..-....-..+.|.+.|++|++-.. ..++|++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 887433 2322 22578999998877665543333333356889999987765321 2578888
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE--cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~--~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+... .+.......++|...+|.|.++.+++++ ..-.+.++|++.+ +.+......=+.+.|+|.+++++.++-
T Consensus 262 ~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 262 ITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred eccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecC
Confidence 7632 2222225578999999999998887766 4458999999887 444455556677889999999988886
Q ss_pred C---CcEEEcC
Q 008393 560 D---KFVKLWK 567 (567)
Q Consensus 560 D---g~I~iWd 567 (567)
| |.|-||+
T Consensus 336 ~nl~gni~i~~ 346 (561)
T COG5354 336 DNLQGNIEIFD 346 (561)
T ss_pred CccccceEEec
Confidence 6 5677764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-09 Score=107.04 Aligned_cols=252 Identities=15% Similarity=0.110 Sum_probs=160.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
+..+++++.+|.|..+|..+|+.+............+.. ++..+++++.++.|..+|.++ ++.+-.... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeecc-CceeecC
Confidence 568888888999999999999998876654432223332 466888899999999999987 444433332 2223221
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEE------ecCCCEEEEEECCCeEEEEECCCCeEEEEecC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 452 (567)
-.. .++.++ .+..++.|+.||.++++.+..++.....+.+ .-.++.++++..++.+..+|.++++.+.....
T Consensus 141 p~v-~~~~v~-v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLV-ANGLVV-VRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEE-ECCEEE-EECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 111 133444 6677999999999999988776543211100 01235777888889999999999987765432
Q ss_pred CCC----C------e-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 453 HTK----P------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 453 h~~----~------V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
... . + .+..+ .+..++.++.+ .++.||..++ +.+...... .... ....+..|++++.+|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~~--~~~~--p~~~~~~vyv~~~~G 289 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDAS--SYQG--PAVDDNRLYVTDADG 289 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeeccC--CccC--ceEeCCEEEEECCCC
Confidence 100 0 1 11111 24466666666 9999999877 333333311 1111 223566788899999
Q ss_pred eEEEEECCCCcEE-Eeccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 521 SLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 521 ~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|+.+|..+++.+ ..... .....+... .+.+|++++.||.|++||
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999998876 22121 122233333 356888899999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-08 Score=98.72 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=182.9
Q ss_pred CccceeccCCc-cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeecccCcc--EEEEEECCC
Q 008393 265 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSL--ITDVRFSPS 340 (567)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~h~~~--V~~i~fsp~ 340 (567)
.+++|-...+- .|+.+-.+.+|-..-.-+ . ++..+....||.=.+|.++ .|+-++ .|+.- -.+-..+.|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV---~-~RvYFlsD~eG~GnlYSvdldGkDlr---rHTnFtdYY~R~~nsD 277 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV---G-ERVYFLSDHEGVGNLYSVDLDGKDLR---RHTNFTDYYPRNANSD 277 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCceEE---c-ceEEEEecccCccceEEeccCCchhh---hcCCchhccccccCCC
Confidence 34678766655 788888888775432111 1 2233334456555555443 232222 22211 112233557
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEec-----cC-----CCcEEEEE-EcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GH-----SASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~h-----~~~V~~l~-~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
|+.|+.. ..|.|.+||.++.......+. .. ..+..-+. |++-...+++..+ .|...|.+...+-.+.
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 8776654 346699999887432111111 00 01111111 3333334554554 6788888777766665
Q ss_pred EE-eCCeeEEEEecCCCEEEEEECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 410 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 410 ~~-~~~~~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
.- ++.+.-..+..+...++.+..|| .+-|||.++++... +...-+.|.++..+++|++++.+.+. .|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 53 34566667777778889999988 99999999988654 44456889999999999999998888 99999999873
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC----eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
. ...-....+-|+.+.|||++++|+.+--+| .|++||+.+++.+......+.=.+-+|.||+++|.--+
T Consensus 435 v---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 V---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred e---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2 222233456799999999999999887766 79999999999987766666667789999999876544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-08 Score=113.91 Aligned_cols=280 Identities=16% Similarity=0.227 Sum_probs=185.0
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEE----eCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC-
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD- 359 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vw----d~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~- 359 (567)
...+.|.++.|-+|..-++.+..+|.|.++ +..+. .+.....-...|.+++||||+..|+..+.+++|.+.+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 446789999999999999999999999999 44432 222333446679999999999999999999988776432
Q ss_pred -----------CCC----------ceeEEecc------------------------CCCcEEEEEEcCCCCeEEEEEe--
Q 008393 360 -----------NPG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 392 (567)
Q Consensus 360 -----------~~~----------~~~~~~~~------------------------h~~~V~~l~~~p~~~~li~s~~-- 392 (567)
..+ +.-..|.| +...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 000 00000100 2234567889999987765543
Q ss_pred C---CCcEEEEECCCCeeeEEE---eCCeeEEEEecCCCEEEEEEC---CCeEEEEECCC---CeEEEEecCCCCCeeEE
Q 008393 393 G---DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAA---ENVVSILDAET---QACRLSLQGHTKPIDSV 460 (567)
Q Consensus 393 ~---dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~---~~~~~~~~~h~~~V~~l 460 (567)
. -..|+||+-+ |....+- .+-...++|.|.|+.+++.-. ...|.+|.-+. ++....+......|..|
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2579999976 5543332 233467899999887777665 34677776443 23222332355689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCC-eEEEEEcCCeEEEEEC----CCC----
Q 008393 461 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---- 530 (567)
Q Consensus 461 ~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~----~~~---- 530 (567)
.|++|+.+||....|.|.+|-..+. ......++... ...+..+.|+|... .|.+.+.+|.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999998889999998653 22233333322 23344588998654 3555555565544432 111
Q ss_pred ------------cEE----------------EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 531 ------------KTM----------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 531 ------------~~~----------------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+ ........|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 000 1112457899999999998899999999998874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-08 Score=116.21 Aligned_cols=231 Identities=11% Similarity=0.111 Sum_probs=154.6
Q ss_pred EEEEECCC-CCeEEEEeCCCcEEEEEcCCCCceeEEecc--------------CCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 333 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--------------HSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 333 ~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--------------h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
..+++++. +.++++-..++.|++||... . .+..+.+ .-.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-N-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-C-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35788775 55666667788899999864 3 2333321 112357899998877677666667889
Q ss_pred EEEECCCCeeeEEEe-------------------CCeeEEEEecCCCEEEEE-ECCCeEEEEECCCCeEEEEecCC----
Q 008393 398 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGH---- 453 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h---- 453 (567)
+++|+.++....... .....++++++++.++++ ..++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999998765432211 123468899966655554 557899999998875432 2111
Q ss_pred -----------CCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEE-----------Eeec--------CCCce
Q 008393 454 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVH-----------ELSC--------NGNKF 501 (567)
Q Consensus 454 -----------~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~-----------~~~~--------~~~~i 501 (567)
-.....|+|+|+++.|+++. .+ .|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12345799999998555554 44 999999986532 1110 0000 01124
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccc--------------cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h--------------~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..++++++|..+++-..++.|++||..++....+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 5789999999777777888999999998876644332 23577899999999988888899999996
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-08 Score=114.55 Aligned_cols=234 Identities=14% Similarity=0.171 Sum_probs=159.7
Q ss_pred EEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecc--c------------CccEEEEEECCCCCeEEEEeC-CCcEEE
Q 008393 292 CCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE--H------------SSLITDVRFSPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 292 ~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~--h------------~~~V~~i~fsp~~~~l~s~s~-dg~I~i 355 (567)
.++++++ +.++++-...+.|++||... ..+..+.+ . -..-..|++.++++.|+++.. .+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788875 56777777788999999864 44433332 1 123578899998887766654 567999
Q ss_pred EEcCCCCceeEEeccC-----------------CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe------
Q 008393 356 WDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------ 412 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h-----------------~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~------ 412 (567)
+|+.+ + .+.++.+- -.....++|+|++..++++...++.|++||..++.......
T Consensus 651 id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99876 2 23333210 12346799999767788788889999999998875432110
Q ss_pred -----------CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC-------------C--------CCCeeE
Q 008393 413 -----------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPIDS 459 (567)
Q Consensus 413 -----------~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-------------h--------~~~V~~ 459 (567)
.....++++|+++.++++.. ++.|++||+.++.......+ + -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 12345889999886665555 68999999987653221100 0 012358
Q ss_pred EEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec--------------CCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 460 VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--------------NGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
++++++|+++++...+ .|++||..++. +..+.+ .-.....++++++|+.+++-+.++.|++
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~----v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKR----VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCe----EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 8999999988887777 99999997652 222221 1124678899999997777778889999
Q ss_pred EECCCCcE
Q 008393 525 WNMSENKT 532 (567)
Q Consensus 525 wd~~~~~~ 532 (567)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-09 Score=103.36 Aligned_cols=268 Identities=14% Similarity=0.197 Sum_probs=181.6
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-----------CCcEEEEEcC
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDAD 359 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-----------dg~I~iwd~~ 359 (567)
+-+.|||-|.||++--.- -|.+|--++...+..+. |.+ |.-+.|||+.+||+|=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 568999999999987644 48899877777666665 443 889999999999998653 2569999999
Q ss_pred CCCceeEEeccCC--Cc-EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EEe-CCeeEEEEecCCCEEEEEECC
Q 008393 360 NPGYSLRTFMGHS--AS-VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK-GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 360 ~~~~~~~~~~~h~--~~-V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~d 433 (567)
+ +...+.+.... .. -.-+.|+.|++++.... ...|.||+..+-..+. .++ .++....|+|.+..|+.-...
T Consensus 291 t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 T-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred c-cchhcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 8 66666665422 22 23467888876554333 4689999987744432 222 366778899997776665442
Q ss_pred -----CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----------eEEEEeCCCCCCCceEEEeecC
Q 008393 434 -----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 434 -----g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----------~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
..+.+..+.+++.+++..-|.-.=..+.|-.+|.+|+.--+. .+.|+.++....+...-. -
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve---l 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE---L 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee---c
Confidence 467888888887777665554444567788889988764322 355666654322222222 2
Q ss_pred CCceEEEEEeCCCCeEEEEEcC---CeEEEEECCC-CcEEEe--ccccCCeeEEEEecCCCEEEEEEC---CCcEEEcC
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASASH---DKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~-~~~~~~--~~h~~~V~~l~~spdg~~l~s~s~---Dg~I~iWd 567 (567)
...|...+|.|.|+.+++.+.+ .++.+|.+++ .....+ .-.....+.+.|+|.|++++.+.. .|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 4568888999999988887665 3889998874 222211 112255788999999999887653 46666664
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-09 Score=98.89 Aligned_cols=196 Identities=21% Similarity=0.238 Sum_probs=144.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee--eecccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~--~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
...++.|++.+.-++++-.+|.+.+-+........ .++.|...++...|+.. .+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34578899999999999999999866665555444 88999999999999764 4588999999999999999555444
Q ss_pred E-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEE--EeCCeeEEEEecCCC-EEEEEECCCeEEEEE
Q 008393 366 R-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHLG-RYLAAAAENVVSILD 440 (567)
Q Consensus 366 ~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~-~l~~~~~dg~I~i~d 440 (567)
. ..+.|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++..+..+|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 3 35679999999999998888999999999999999994 555433 347788888887643 456666666667776
Q ss_pred CCCC--e---EEEEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEE-EEeCCC
Q 008393 441 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVR-VWTVGS 484 (567)
Q Consensus 441 ~~~~--~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~-iwd~~~ 484 (567)
...+ + .....+.|.+-+..-.|.....+|++|+ .| .++ +|-.-+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 6554 3 3344555666566666644445788865 33 434 665443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-08 Score=102.75 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=132.9
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe-EEEEEeC--CCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDG--DGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 426 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-li~s~~~--dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 426 (567)
.|.+-|.+. ...+.+.... .+....|+|+|+. ++++... +..|+++|+.+++..... .+......|+|++..
T Consensus 170 ~l~~~d~dg--~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTL--TYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCC--CceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 455555543 3334343333 7889999999986 4443333 457999999988765543 344556789999988
Q ss_pred EEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCC
Q 008393 427 YLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 427 l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
++.... +..|+++|+.+++.. .+..+........|+|||+.|+..+.. .|+++|+.++.... + .....
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l---t~~g~ 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V---VFHGK 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C---ccCCC
Confidence 876654 358999999887644 344344334456899999988887743 68888987663311 1 11111
Q ss_pred ceEEEEEeCCCCeEEEEEcC---------CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 500 KFHSCVFHPTYPSLLVIGCY---------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~d---------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
. ...|+|+|++|+..... ..|++.|+.++....+... .......|+|||++|+....+
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 24899999999887654 2789999998877655543 234468999999988766644
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-10 Score=103.06 Aligned_cols=236 Identities=17% Similarity=0.316 Sum_probs=160.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-----eeeeecccC------------ccEEEEEECCCCC--eEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLATS 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-----~~~~l~~h~------------~~V~~i~fsp~~~--~l~s~ 347 (567)
...|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999765322 222344443 4588888876543 67778
Q ss_pred eCCCcEEEEEcCCCC------------------c-----------------------eeEEe-ccCCCcEEEEEEcCCCC
Q 008393 348 SFDKTVRVWDADNPG------------------Y-----------------------SLRTF-MGHSASVMSLDFHPNKD 385 (567)
Q Consensus 348 s~dg~I~iwd~~~~~------------------~-----------------------~~~~~-~~h~~~V~~l~~~p~~~ 385 (567)
+.|.+|++|.+.... . +.+.+ ..|.-.|.+|.|..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 889999999876420 0 01111 35777889999998876
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeE---EEeC--------CeeEEEEecCCC-EEEEEECCCeEEEEECCCCeE------E
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTR---VFKG--------GTAQMRFQPHLG-RYLAAAAENVVSILDAETQAC------R 447 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~---~~~~--------~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~------~ 447 (567)
.++ ++ .|-.|.+|+++-..... .++. -++...|+|... .+...+..|.|++.|++.... +
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 44 58889999987533211 1221 245667888654 455677789999999984211 1
Q ss_pred E--E--------ecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCC------------Cce---E
Q 008393 448 L--S--------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NKF---H 502 (567)
Q Consensus 448 ~--~--------~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~------------~~i---~ 502 (567)
. . +.+-...|..+.|+++|+++++-..-+|+|||++..+ .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 1 1122346788999999999988777799999998653 4555554331 112 3
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
.|.|+.|.+.+++|+..+..-+|-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 467888888899888877666665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-10 Score=104.74 Aligned_cols=224 Identities=17% Similarity=0.255 Sum_probs=145.2
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc----eeEEeccCC------------CcEEEEEEcCCCCe-EEEE
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPNKDD-LICS 390 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~~p~~~~-li~s 390 (567)
..+.|.+|.|...|.+|++|..+|.|.+|.-+.... ....+..|. ..|..+.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 455689999999999999999999999997654332 223333332 35788899876542 3445
Q ss_pred EeCCCcEEEEECCCCeeeEE---Ee--C---CeeEEE---EecCCCEEEEEECCCeEEEEECCCCeEEEEe-cCCCCCee
Q 008393 391 CDGDGEIRYWSINNGSCTRV---FK--G---GTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPID 458 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~~~~---~~--~---~~~~~~---~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~V~ 458 (567)
.+.|.+|++|.+........ +. + .+..+. ..+..-.+. ..+.+.+ .+|...|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve---------------a~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE---------------ASPRRVYANAHTYHIN 168 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee---------------eeeeeeccccceeEee
Confidence 67899999999876543321 00 0 111111 111111111 1122233 35888899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCC-----CceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcE
Q 008393 459 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~-----~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
+|.++.|+..++++.+=.|.+|+++-....-.|-.++.+. .-|++..|+|.. +.++..+..|+|++.|++....
T Consensus 169 SIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 169 SISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 9999999998876544499999997544333344444332 347888899964 5667778889999999984321
Q ss_pred -------EE----------eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 -------MT----------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 -------~~----------~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. +..--..|..+.|+.+|+|+++-.. -+|+|||
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 11 1112246889999999999998654 4899997
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-08 Score=100.72 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=147.2
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCe-EEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~-l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
..|.+-|.+... ...+.... .+....|+|||+. ++..+.+ ..|+++|+.+ +.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 355555554333 33233233 6788999999984 6654443 4688899977 332 3333355666778899999
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeeEEEeCC--eeEEEEecCCCEEEEEECC---CeEEEEECCCCeEEEEecCCCCCe
Q 008393 385 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 385 ~~li~s~~~d--g~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
+.++++.+.+ ..|.++|+.++......... .....|+|++..++..+.. ..|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9998877655 46888898888755443332 3456799999988887753 2789999988876433322 111
Q ss_pred eEEEEcCCCCEEEEEeC--------C--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEE
Q 008393 458 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 524 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~--------d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~i 524 (567)
...|+|||++|+.... + .|.+.|+.++.. ..+... .......|+|||+.|+.....+ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999998887763 2 577888876632 222222 1223578999999888876543 5888
Q ss_pred EECCCCcEEEeccccCCeeEEE
Q 008393 525 WNMSENKTMTLTAHEGLIAALA 546 (567)
Q Consensus 525 wd~~~~~~~~~~~h~~~V~~l~ 546 (567)
+++.......+....+.+...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8988777666655555555443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=126.82 Aligned_cols=208 Identities=17% Similarity=0.288 Sum_probs=163.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----Cee
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 416 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~ 416 (567)
+..+..+..++...-|..+..+ ..++.+-..|.++.-+|...+++ +|+.||.|++|....+..+..+.. .++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3444455556666667665422 23344567788999999877666 999999999999999988877653 356
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe---CC-eEEEEeCCCCCCCceEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+.|+..|+.+-++..||.+.+|.+. .++....+.|......+.|-. ..+++++ ++ .+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999988 667777888999999988875 5566654 33 79999986554445666
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|....+++++.|....|++||.+|.|++||++..+.. .+.. +. ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999877654 3322 44 567899999999999995
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-10 Score=125.33 Aligned_cols=190 Identities=21% Similarity=0.318 Sum_probs=153.5
Q ss_pred ceEEeeccCC-----CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee
Q 008393 249 NVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 323 (567)
Q Consensus 249 ~v~~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~ 323 (567)
+|.++-+|.. +++.|+.++.|....+...-..++... ..|+.+.|+..|+.+..+..||.+.+|.+. .+...
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 4566655554 677889999999888866555555443 899999999999999999999999999987 67788
Q ss_pred eecccCccEEEEEECCCCCeEEEEe---CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 324 NLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~~l~s~s---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
..+.|.....+..|-. ..+++++ .++.+.+||.--+.........|.+.++++++.|.. .++++|+.+|.|++|
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLF 2363 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCcEEEe
Confidence 8889999999999976 5777764 478899999765444333348899999999999984 577799999999999
Q ss_pred ECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 401 SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 401 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
|++..+.++.+.. +. ....++.+...|.|+||++.....++.+.
T Consensus 2364 D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ehHHHHHHHHhhh------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999888877765 33 46788999999999999998877666654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-06 Score=83.87 Aligned_cols=214 Identities=18% Similarity=0.224 Sum_probs=142.8
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC-CCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 292 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs-p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
+++|.+ ++.++++--..+.|..|+..+++... +.... ...+++. ++ ..|+.+..++ +.++|..+ +.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678888 77777777788999999998876644 22122 6677777 55 5666666655 56669887 33222222
Q ss_pred ----c-CCCcEEEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-C
Q 008393 370 ----G-HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E 433 (567)
Q Consensus 370 ----~-h~~~V~~l~~~p~~~~li~s~~~d--------g~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-d 433 (567)
. .....+.+++.++|+ ++++.... |.|..++.. ++...... ...+.++|+|+++.++++.. .
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 346788999999987 55455433 568888888 55444433 35678999999998876554 7
Q ss_pred CeEEEEECCC--C-----eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 434 NVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 434 g~I~i~d~~~--~-----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
+.|..|++.. . +....+....+....++++.+|++.++.... .|.+++.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 8999999853 2 1222233323347889999999988777666 99999976 4 56666766666899999
Q ss_pred Ee-CCCCeEEEEE
Q 008393 506 FH-PTYPSLLVIG 517 (567)
Q Consensus 506 ~s-p~~~~l~~~~ 517 (567)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=98.63 Aligned_cols=244 Identities=12% Similarity=0.195 Sum_probs=169.8
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
......+++|.+.|++...-|...-+++.+.|.+++||--.+.+.....+ ..-..+++++.+.++.. .++.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence 34556788999999999999988999999999999999765544433322 23457889999998855 45488889999
Q ss_pred EEEECCC----CeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEE
Q 008393 398 RYWSINN----GSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 398 ~iwd~~~----~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 470 (567)
.-+.+.. ....+.+. ..+..+.|+-....+++.+.|..+.-.-.+.+..+..+.- ...-+++.+.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 9887653 22223222 3455666777777788888777665554444432211110 001111111111 233
Q ss_pred EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--EEEeccccCCeeEEEE
Q 008393 471 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAV 547 (567)
Q Consensus 471 s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~ 547 (567)
.|... .|.+-.+.. .....+.++.+|...+.++.|.+....|+++..|..+.+||+..++ ...+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 33322 344333322 2346788999999999999999999999999999999999997554 4478899999999999
Q ss_pred ecCCCEEEEEECCCcEEEcC
Q 008393 548 STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 548 spdg~~l~s~s~Dg~I~iWd 567 (567)
.+--+.|++++.||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88889999999999999996
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=92.81 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=115.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCC-cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg-~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
+|.+.|.-..+..+++-++.|..|| .+.|||.++++... +...-+.|.++..+++|++++.+.....|.+.|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 6788899999999999999999999 89999998876544 445667799999999999999999999999999998 44
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d----g~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 432 (567)
....-+...+-|+.++|+|++..+. -+--+ ..|+++|+..++....... ....-+|.|++.++..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 4444445667899999999976444 44333 4799999999887766543 4456679999888776654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.3e-10 Score=114.11 Aligned_cols=218 Identities=20% Similarity=0.283 Sum_probs=158.6
Q ss_pred cceeccCCccceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeE
Q 008393 267 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
.+|++.....-.....+.+|+..|+.+-|.+.. ..||+++.|..+..||+.+. ..+..+..-......|+|+-....+
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 356666655555666789999999999999865 58899999999999999864 3445555555567788998866667
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--E--eCCeeEEEE
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F--KGGTAQMRF 420 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~--~~~~~~~~~ 420 (567)
.+.+....|++||+..+..++..+++|...|..++|.......+.+++.|++|++||......... . +..+..-++
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 777777889999999988899999999999999999876666777999999999999876543222 1 223333344
Q ss_pred ecCCCEEEEEE-----------CCCeEEEEECCC-CeEEEEecCCCCCeeEEEEcCCC----------CEEEEEeCC-eE
Q 008393 421 QPHLGRYLAAA-----------AENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSG----------ELLASVSED-SV 477 (567)
Q Consensus 421 ~~~~~~l~~~~-----------~dg~I~i~d~~~-~~~~~~~~~h~~~V~~l~~sp~g----------~~l~s~s~d-~I 477 (567)
.|-+.-++.-- .++....|+..+ ..+++.|.||.+.|...-|-..+ -.|++=+.| .+
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 44443322221 123333444444 37889999999988776664322 268999999 99
Q ss_pred EEEeCCC
Q 008393 478 RVWTVGS 484 (567)
Q Consensus 478 ~iwd~~~ 484 (567)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998864
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-10 Score=120.54 Aligned_cols=262 Identities=16% Similarity=0.200 Sum_probs=179.1
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 353 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I 353 (567)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|........|...|+.+.=+.+|..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999877765433 47
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eC------CeeEEEEecCCCE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG------GTAQMRFQPHLGR 426 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~------~~~~~~~~~~~~~ 426 (567)
.+|++.+.+...+.|.+ -.++.|+.....-+ .|.......+||+.++..+.++ .+ ..+...|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875655555553 35677765432223 4444567899999998876653 22 2356778998766
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
++- || .+||.+..+.++.|......+ .-.|+|.|.-++.-+ .|||+++.. .++.... -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~---lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFK---LLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHH---HHhcCcc--ccceEEEe
Confidence 653 22 589999988887776554333 345999999888766 489998763 3332221 11234567
Q ss_pred eCCCCeEEEEEc--C---------------CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEE
Q 008393 507 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 507 sp~~~~l~~~~~--d---------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
+..|..+++.-. | ...+-||......+........|..++-++...+|+.-
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765544320 0 02233333333333223334456666666666666543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-07 Score=97.90 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=151.6
Q ss_pred cCCccceeeeeeccCCCCeEEEEEcCCC------------CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 272 SQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg------------~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
.+...++.+..+..|...|+.+.|.|.. -+||++...|.|.+||+..+..+..+..|.+.|..++|-+
T Consensus 40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence 3345567888999999999999998732 2577888899999999999999999999999999999976
Q ss_pred ---CC-CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-------Ceee
Q 008393 340 ---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCT 408 (567)
Q Consensus 340 ---~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-------~~~~ 408 (567)
+. ..|+.-....+|.+|+.++ +..+-.+........|+.+.|-...-++.-+..|.|.+-+.-. ++..
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 3566667778899999998 4444444444556677898887665555566677777766432 1111
Q ss_pred EEEeC----------------------------CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEE
Q 008393 409 RVFKG----------------------------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSV 460 (567)
Q Consensus 409 ~~~~~----------------------------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l 460 (567)
..-.. ....++|+|.-..++.......+.++|++-..++....-..+.+.-+
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv 278 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV 278 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee
Confidence 11110 01225688988889999999999999999887777766555655566
Q ss_pred EEcCCC--CEEEEEeCC-eEEEEeCC
Q 008393 461 CWDPSG--ELLASVSED-SVRVWTVG 483 (567)
Q Consensus 461 ~~sp~g--~~l~s~s~d-~I~iwd~~ 483 (567)
.|-|++ ..|++...+ .+.+|--+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEee
Confidence 666654 367777766 77776543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-07 Score=87.75 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=138.0
Q ss_pred CCcEEEEeCCCCeeeeeeccc--CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
+|.|..||..+++.+.....- .....+. ..+++.++++++.++.|..||..+ ++.+-.+.. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-ccc
Confidence 688999999999999887541 1222211 233566888889999999999988 555444442 2221111122 234
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEE-eCC------eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCC--
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-- 456 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~-~~~------~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-- 456 (567)
.++ .+..++.|+.+|..+++.+..+ ... .........++.++++..++.|..+|+++|+.+.........
T Consensus 78 ~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 444 5567889999999999998874 321 122334444788999999999999999999999888764422
Q ss_pred --------eeEEEEcCCCCEEEEEeCC-e-EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 457 --------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 457 --------V~~l~~sp~g~~l~s~s~d-~-I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
+..-.+..++ .++.++.+ . +.+ |+.+++ .+.... ...+.. .....+..|++++.++.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 55555545 4 555 998873 333222 222222 2557788888888999999999
Q ss_pred CCCCcEE
Q 008393 527 MSENKTM 533 (567)
Q Consensus 527 ~~~~~~~ 533 (567)
+++++..
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999865
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-06 Score=82.97 Aligned_cols=215 Identities=9% Similarity=0.055 Sum_probs=138.6
Q ss_pred EEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 333 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 333 ~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
.+++|.+ ++.++++-...+.|..|+..+... ..+.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3578888 666666666789999999987322 2222222 7777887 55 5555 4443 4566669999866544
Q ss_pred EeC--------CeeEEEEecCCCEEEEEECC--------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 411 FKG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 411 ~~~--------~~~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
... ..+.+++.+++..+++.... +.|+.++.. ++...... .-...+.|+|+|+++.|+.+..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 332 24668899998755555443 568888888 55443333 3455789999999998876554
Q ss_pred C--eEEEEeCCCCCC-C---ceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEE
Q 008393 475 D--SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV 547 (567)
Q Consensus 475 d--~I~iwd~~~~~~-~---~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~ 547 (567)
. .|..|++..... . ..+..+.......-.+++..+|+..++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 4 888898864322 1 2222333333347889999999977777788999999988 6655 34433458999999
Q ss_pred e-cCCCEEEEE
Q 008393 548 S-TETGYVASA 557 (567)
Q Consensus 548 s-pdg~~l~s~ 557 (567)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 4 665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=98.84 Aligned_cols=234 Identities=17% Similarity=0.296 Sum_probs=144.5
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce----eEEeccCC------------CcEEEEEEcCCC-CeEEEE
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 390 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~----~~~~~~h~------------~~V~~l~~~p~~-~~li~s 390 (567)
..+.|+++.|...|.||++|...|.|.+|.-+....+ +..+.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3456999999999999999999999999987653211 22344443 347778876543 333445
Q ss_pred EeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE--------C-CCeEEEEECCCCeEEEEecCCCCCeeEEE
Q 008393 391 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA--------A-ENVVSILDAETQACRLSLQGHTKPIDSVC 461 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~ 461 (567)
.+.|.+|++|.+......-+-......-.-+|.++-+.+.. . +..|..+ .+...-..|...|.+|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 67899999999886643322211111111111111111000 0 0111111 01111245888899999
Q ss_pred EcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCC-----CceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCc----
Q 008393 462 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENK---- 531 (567)
Q Consensus 462 ~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~-----~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~---- 531 (567)
|..|...++++.+=.|.+|++.-....-.+..++.+. .-|++..|+|.. ..+...+..|.|++-|++...
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999888776544499999997554333444444443 337788899964 556667788999999998322
Q ss_pred -EE----E--------eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 -TM----T--------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 -~~----~--------~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+. . +.+-...|..+.|+++|+||++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 1 1122356888999999999987765 4799997
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-08 Score=101.40 Aligned_cols=235 Identities=15% Similarity=0.204 Sum_probs=155.7
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC------------CeEEEEeCCCcEEEEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVRVWD 357 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~------------~~l~s~s~dg~I~iwd 357 (567)
-.++.|++.| +||.|+ ...|.|.|..+.+.+..+..|...|+.+.|.|-. -.||++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4578999987 777776 5688999999999999999999999999997721 2577888889999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCC---CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~---~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
... ...+..+..|..+|..++|.+. ..+++++-..-.+|.+|+..+|+
T Consensus 96 ~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~---------------------------- 146 (1062)
T KOG1912|consen 96 FVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE---------------------------- 146 (1062)
T ss_pred ehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----------------------------
Confidence 987 6666778888999999998653 22344444445555555555554
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCC-EEEEEeCCeEEEEeCCC-CCC---CceEEEeecCCC---------
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGE-LLASVSEDSVRVWTVGS-GSE---GECVHELSCNGN--------- 499 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~-~l~s~s~d~I~iwd~~~-~~~---~~~i~~~~~~~~--------- 499 (567)
...+.........|+.++| |.+ +.+.++.+.|.+-+.-. .+. .+.+..-..|..
T Consensus 147 -----------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 147 -----------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred -----------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 4444433334445556655 222 33334444333333221 111 111111111100
Q ss_pred ----------------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC--CEEEEEECC
Q 008393 500 ----------------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET--GYVASASHD 560 (567)
Q Consensus 500 ----------------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg--~~l~s~s~D 560 (567)
....++|+|..+.++.......+.++|++-..++ .+.-..+.+.-+.|-|++ ..|++.-.|
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n 295 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN 295 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence 0123578999888888888899999999988777 444445566677777766 468888899
Q ss_pred CcEEEc
Q 008393 561 KFVKLW 566 (567)
Q Consensus 561 g~I~iW 566 (567)
|.+.||
T Consensus 296 G~ltir 301 (1062)
T KOG1912|consen 296 GRLTIR 301 (1062)
T ss_pred CeEEEE
Confidence 999998
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-07 Score=86.25 Aligned_cols=220 Identities=8% Similarity=-0.014 Sum_probs=149.7
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQ 417 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~ 417 (567)
..+||.|+..|...+|...+..........|...|+-+.-.-+...-+..++.|.++++.++..+....... -....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 448999999999999999875555555555555444322222222233467788888888887654433332 23677
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCC-eEE-E-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc--eE
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQ-ACR-L-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~-~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~--~i 491 (567)
+.+++++...++.+....|..|.+... +.+ . .....++.-.+..|+.....+|++..| ++.|||++....+. .-
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 889999999999999999999988653 322 2 233345556788999999999999999 99999998753321 12
Q ss_pred EEeecCCCceEEEEEeCCCC--eEEEEEcCCeEEEEECCCCcEEE--------eccccC-CeeEEEEecCCCEEEEEECC
Q 008393 492 HELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSENKTMT--------LTAHEG-LIAALAVSTETGYVASASHD 560 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~--~l~~~~~dg~I~iwd~~~~~~~~--------~~~h~~-~V~~l~~spdg~~l~s~s~D 560 (567)
..-..|.+.+..|.|++.|. +|+..-.-+.+.+.|++++.... ...|.. .|..-.|+.++..+.+.+++
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 23345788899999998664 45555555789999999886441 223333 37777888777666555544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-07 Score=100.45 Aligned_cols=234 Identities=12% Similarity=0.215 Sum_probs=157.6
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEE----EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVW----DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iw----d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
..+.|.++.|.++...|+.+..+|.|.++ +... ..+.....-...|.+++|+||+..++ ..+.+++|.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella-~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLA-LVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEE-EEeCCCEEEEEecc
Confidence 45679999999999999999999999999 5543 23344444567899999999977555 55557777665421
Q ss_pred ---------------C--------CeeeEE---------------------------EeCCeeEEEEecCCCEEEEEEC-
Q 008393 404 ---------------N--------GSCTRV---------------------------FKGGTAQMRFQPHLGRYLAAAA- 432 (567)
Q Consensus 404 ---------------~--------~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~- 432 (567)
. |+.... .......++|..||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 000000 1113355779999999888775
Q ss_pred --C---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 433 --E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 433 --d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
. ..|+||+-+ |....+-..-.+--.+++|-|.|++||+.-. . .|.+|.-+.....+..-.+......+..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999977 5544443333333457899999999999875 2 6888876544433433333345678999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEE---Eec-cccCCeeEEEEecCCC-EEEEEECCCcEEEc
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT-AHEGLIAALAVSTETG-YVASASHDKFVKLW 566 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW 566 (567)
+.|++++..|++...|. |.+|-..+...+ .+. .....+..+.|+|... .|...+.+|.+..+
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 99999999888877554 999999887755 222 2233455699998654 36566655665543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=107.10 Aligned_cols=204 Identities=19% Similarity=0.294 Sum_probs=144.8
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
+..+.+|...|+.++--.+.+.+++++.|++|++|.+...+. +..++..|+.+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 345678999999998888888999999999999999975432 5567889999999999997754 44454 89
Q ss_pred cEEEEECCCCeeeEEEe-----CCeeEEEEec--CCCEEEEE-ECCCeEEEEECCCCeEEEEecC-----CCCCeeEEEE
Q 008393 396 EIRYWSINNGSCTRVFK-----GGTAQMRFQP--HLGRYLAA-AAENVVSILDAETQACRLSLQG-----HTKPIDSVCW 462 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~-----h~~~V~~l~~ 462 (567)
.|.+||.--++.+.... +....+..-+ +...++++ +.+.+|+++|.+..+....++. ...-+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776654322 2222333322 33445555 4588999999999876655543 3456889999
Q ss_pred cCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE-EECCCCcE
Q 008393 463 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL-WNMSENKT 532 (567)
Q Consensus 463 sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i-wd~~~~~~ 532 (567)
.+.|++++.+-.. +|.+.|.++| +.+..+...+.....++ .|....|+....|.++.+ |-.-.+..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 9999999998777 9999999988 44444433332222222 345556777777788877 76655543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-07 Score=93.95 Aligned_cols=252 Identities=11% Similarity=0.019 Sum_probs=155.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE---
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 375 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V--- 375 (567)
+..++.++.+|.+..+|.++|+.+............... .+..++.+..++.|..+|..+ ++.+-.+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 456777888999999999999998877654322222222 234677788899999999988 44443333211100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----e------EEEEec--CCCEEEEEECCCeEEEEEC
Q 008393 376 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 376 --~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~------~~~~~~--~~~~l~~~~~dg~I~i~d~ 441 (567)
.+.... +.. ++.++.++.+..+|..+++.+..+.... . .+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 223 4467779999999999998766543210 0 011111 3578888888999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~d 519 (567)
.+++.+.+.... ....+.. .+..|+.++.+ .|..+|..+++ .+...... ........+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 35566666666 99999998773 23222111 111222222 25578999999
Q ss_pred CeEEEEECCCCcEE-EeccccCCee-EEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.|+++|..+++.+ ........+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999877 3322222222 2233 244788889999988763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.4e-07 Score=85.21 Aligned_cols=241 Identities=15% Similarity=0.134 Sum_probs=161.9
Q ss_pred EEEEcC-CCCeEEEEeCCC-cEEEEeCCCCeeeeeecccCccE--EEEEECCCCCeEEEEeC-----CCcEEEEEcCCCC
Q 008393 292 CCHFSS-DGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSF-----DKTVRVWDADNPG 362 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg-~I~vwd~~~~~~~~~l~~h~~~V--~~i~fsp~~~~l~s~s~-----dg~I~iwd~~~~~ 362 (567)
.++.+| ++..++.+-.-| ...+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||....-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 678888 556667776655 46789999998887766433322 23589999999998744 5789999999656
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCC--CEEEEEECCCeEEEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAAAENVVSILD 440 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~I~i~d 440 (567)
..+..+..|.-.-..|.+.|+++.|++. +|-|.- +|+. .++-....+..+.+.|
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~T---------------------hpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIET---------------------HPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCcc---------------------CcccCceecChhhcCCceEEEe
Confidence 6778888888888899999999777754 222221 1111 1233344566777788
Q ss_pred CCCCeEEEE--e--cCCCCCeeEEEEcCCCCEEEEEeCC--------eEEEEeCCCCCCCceEE----EeecCCCceEEE
Q 008393 441 AETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHSC 504 (567)
Q Consensus 441 ~~~~~~~~~--~--~~h~~~V~~l~~sp~g~~l~s~s~d--------~I~iwd~~~~~~~~~i~----~~~~~~~~i~~~ 504 (567)
..+++.+.+ + ..|...|..+++..+|..++..-.. -|.+++... ....+. ....-...+-++
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEE
Confidence 888887766 4 3377789999999999866655321 244444322 111111 112234678899
Q ss_pred EEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 505 VFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 505 ~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+++.++..+++.+-. +.+.+||..++..+....- ..+..++..+++ ++++.+.-
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 999999988777765 5899999999998854433 235666666655 66665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=103.38 Aligned_cols=228 Identities=16% Similarity=0.203 Sum_probs=163.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--------------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~--------------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
....|+.|+....+|++|+.||.++|..+.+... .-.++.||...|.-+.|+.+...|- +.+.+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT-tSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT-TSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccc-ccCCCc
Confidence 3478999999999999999999999998865211 1246779999999999998765544 888899
Q ss_pred cEEEEECCCCeeeEEE-----eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEE
Q 008393 396 EIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l 469 (567)
.|.+|-+-.+.....+ +.-+..++|+.+|.++..+..||.|.+=.++..+... .+++ .....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence 9999998877644322 2346788999999999999999998887776554321 2222 223468899999888
Q ss_pred EEEeCC-eEEEEeCCCCCC----CceEEE----eecCCCceEEEEE--------eCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 470 ASVSED-SVRVWTVGSGSE----GECVHE----LSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~----~~~i~~----~~~~~~~i~~~~~--------sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
+.+-.+ .+.+||....-. ..|.-. +......|..+.| -|+.+.|+++..+|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 877777 899999754311 112111 1112223444444 35888999999999988876554443
Q ss_pred EEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 533 MTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
..+....-.|....|+++|..||.+|.|
T Consensus 252 Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 252 PVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CeEEecccEeecceecCCCcEEEEccCc
Confidence 3333333678889999999999999865
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=99.20 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=164.8
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeeccc--CccEEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH--SSLITDVRF 337 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~f 337 (567)
+.|+..+-|-...-.-.+.+..++.|.+.|.+++.+-||.++++++. |..++++|+++...+..++-. .+.+. +..
T Consensus 27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~ 105 (558)
T KOG0882|consen 27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVT 105 (558)
T ss_pred ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-Eec
Confidence 34455666655554455678889999999999999999999999877 999999999987766444321 22221 122
Q ss_pred CCCCC--eEEEE-eCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 338 SPSMP--RLATS-SFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 338 sp~~~--~l~s~-s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
++... .|+++ -.++.|.|+|-...... ...-.-|..+|.++.+.+.++..+ +....|.|..|..+. .+.-
T Consensus 106 skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qf 179 (558)
T KOG0882|consen 106 SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQF 179 (558)
T ss_pred CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccC
Confidence 22211 33333 45789999998764433 334456899999999999987555 888889999998763 0111
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
+...+. |.++...-+..+.-.+....+++|+|+|..+.+-+.| .|+++++.+++....+.
T Consensus 180 Pr~~l~-------------------~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 180 PRTNLN-------------------FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccc-------------------ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 111111 1222222222333345667889999999999998888 99999998774332221
Q ss_pred Ee-----------------------------ecC-CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecccc
Q 008393 493 EL-----------------------------SCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHE 539 (567)
Q Consensus 493 ~~-----------------------------~~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~ 539 (567)
+. ..+ ....+.++|...+++|+.++-- .|+++++.++.+..+.+..
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILGKD 316 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEeccc
Confidence 11 111 1224567899999988887654 4888999888877555443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-07 Score=84.62 Aligned_cols=196 Identities=10% Similarity=0.049 Sum_probs=127.8
Q ss_pred CCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCC----CCeEEEEEeCCCcEEEEECCCCeeeEEE-eCCeeEEE----
Q 008393 350 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR---- 419 (567)
Q Consensus 350 dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~~~---- 419 (567)
...|.+|++-+..+ .+..+. .+.|.|. ...+++.|+.-|...+|...+.+....+ ......+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34478888876443 233332 3444331 2336778889999999999876543322 11222111
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
+......+..++.|.++++++++.+.....+....-.+.++++++|++++++.++. .|..|.+....+...........
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 22223457777888888888776654333322222338899999999999999988 99999997543211111233334
Q ss_pred CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE------EeccccCCeeEEEEecCCC
Q 008393 499 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~ 552 (567)
..-.+..|+.....++++..||++.|||++..... ....|.+.++.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 44456689999999999999999999999875433 3446899999999998663
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-07 Score=90.84 Aligned_cols=248 Identities=16% Similarity=0.190 Sum_probs=147.6
Q ss_pred EEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEE
Q 008393 311 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 311 I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~ 389 (567)
+++.+..+++....+..|...|.+++|+|..+ +|..++.+.+|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 66666667777777788999999999999877 788999999999999998 6667777767 88999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeeE-EEe-----CCeeEE------EEecCCCEEEEEECCCeEEEEEC----CCCeEEEEecCC
Q 008393 390 SCDGDGEIRYWSINNGSCTR-VFK-----GGTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 453 (567)
Q Consensus 390 s~~~dg~I~iwd~~~~~~~~-~~~-----~~~~~~------~~~~~~~~l~~~~~dg~I~i~d~----~~~~~~~~~~~h 453 (567)
.|..+|.|.|||++..+-.. .+. .++..+ ...+.++.++....+- ..|+. ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccC-C
Confidence 99999999999998754321 111 112221 2333444444444332 23332 2222222222 2
Q ss_pred CCCeeEEEEcCCCC-EEEEEeCC----eEEE----EeCCCCCCCceEEEe-ecC-CCc------eEEEEEeCCCCeEEEE
Q 008393 454 TKPIDSVCWDPSGE-LLASVSED----SVRV----WTVGSGSEGECVHEL-SCN-GNK------FHSCVFHPTYPSLLVI 516 (567)
Q Consensus 454 ~~~V~~l~~sp~g~-~l~s~s~d----~I~i----wd~~~~~~~~~i~~~-~~~-~~~------i~~~~~sp~~~~l~~~ 516 (567)
.+...++.+.+..+ +|++.-.+ .++. -|...| ..+... .++ +.+ -..+.-.++.++|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 34444555555333 33333321 1111 111111 111100 011 111 0111223445555544
Q ss_pred Ec-CCeEEEEECCCCcEEEeccccCCeeEEEEec--CCCEEEEEECCCcEEEcC
Q 008393 517 GC-YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~s~Dg~I~iWd 567 (567)
+. .+.+.+||..+.+.+.-.....+|.+++... .+.||++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 43 4699999999999885555668888887643 234666655 44677764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.1e-07 Score=92.03 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCc----------cEE-EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~----------~V~-~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..+++++.++.|.-+|.++|+.+........ .+. .+.. .+..++.++.+|.++.+|.++ ++.+-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCccc
Confidence 55777778889999999999998877653221 000 0111 345778888999999999988 443333
Q ss_pred eccCCCcEEE-EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEE----Eec--CCCEEEEEECCCeEEEEE
Q 008393 368 FMGHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQP--HLGRYLAAAAENVVSILD 440 (567)
Q Consensus 368 ~~~h~~~V~~-l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~--~~~~l~~~~~dg~I~i~d 440 (567)
.... ..+.+ ..+. +.. ++.+..++.|..+|.++++.+..+......+. .+| .++.++++..++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~--~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS--DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 3322 22222 2222 233 44677799999999999999887764321110 011 245788888899999999
Q ss_pred CCCCeEEEEecCCCC-------CeeEEEEcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 441 AETQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~-------~V~~l~~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
..+++.+........ ....+..+| .+..++.++.+ .+..+|..+++ .+...... ....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~--~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREYG--SVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecCC--CccCcE--EEC
Confidence 999987766532110 011111122 23455566666 99999998873 33322211 111122 246
Q ss_pred CeEEEEEcCCeEEEEECCCCcEEE-eccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQSLELWNMSENKTMT-LTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~~-~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..|++++.++.|+.+|..+++.+- .... .....+..+ .+.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 678899999999999999987652 2111 111222222 245677777888776543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-06 Score=78.28 Aligned_cols=224 Identities=19% Similarity=0.184 Sum_probs=132.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeee---ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN---LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~---l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
++.+.||++||.- .|..|.|=..++. ..+.. -+...-.=+.++|+||+..||.+...|+|++||+.. .. +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SE-LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ce-eEE
Confidence 5678899998876 4666766554321 11122 222333456899999999999999999999999984 22 222
Q ss_pred ecc-------CCCcEEEEEEcCCC-----CeEEEEEeCCCcEEEEECCCC-----eeeEEE------eCCeeEEEEecCC
Q 008393 368 FMG-------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNG-----SCTRVF------KGGTAQMRFQPHL 424 (567)
Q Consensus 368 ~~~-------h~~~V~~l~~~p~~-----~~li~s~~~dg~I~iwd~~~~-----~~~~~~------~~~~~~~~~~~~~ 424 (567)
+.. -...|..+.|.... ...++.-..+|.++-|-+..+ .....| ..++..+.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 23567777775432 223445667888888876332 222332 3478899999998
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc---CCCCEEEEEeCCe-------EEEEeCCCCCCCceEEEe
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD---PSGELLASVSEDS-------VRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s---p~g~~l~s~s~d~-------I~iwd~~~~~~~~~i~~~ 494 (567)
..|++++....= ++. -+.....+++-.+- |..+.+ +..++. ..+|.+-+. ......
T Consensus 160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~---~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRIPSF---KFFSRQ 225 (282)
T ss_pred CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEc-cccCccccccccccceeeccce---eeeecc
Confidence 888888764320 000 00011122221111 111111 112111 123333211 122222
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
......|..+.++|||..|++...+|.|.+|++..-+..
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 335678999999999999999999999999999876544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=97.35 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...|..+..+......-.++....+.+|....+... .+-+|-..+++|+|+||++.|+++..|+.|+|-........-.
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES 188 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence 333444444433333333455566667766654333 3447999999999999999999999999999988876333334
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
..-||+..|..++..++ +++++++.|++|++||+.+++++..+.
T Consensus 189 fclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 45689999999999876 356699999999999999999987654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-09 Score=112.68 Aligned_cols=202 Identities=16% Similarity=0.292 Sum_probs=150.2
Q ss_pred CCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-
Q 008393 317 DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG- 395 (567)
Q Consensus 317 ~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg- 395 (567)
..++...+++.|....+|++|+-+.+.|+.|+..|.|++|++.+ +.....+.+|...|+-+.-+.+|..++.+.+...
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCc
Confidence 35677788889999999999999999999999999999999998 6667788899999999999999988886666555
Q ss_pred cEEEEECCC-CeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe-cC---CCCCeeEEEEcCCCCEEE
Q 008393 396 EIRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QG---HTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 396 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~---h~~~V~~l~~sp~g~~l~ 470 (567)
...+|++.+ +...+.| .+..++.|+.....-++++......+||+.++.+..++ .+ ....-++..|+|+.++++
T Consensus 1168 lsaLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hHHHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 578999876 2333333 34567778777666677777789999999998766553 22 122336788999988776
Q ss_pred EEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 471 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 471 s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
--+ .+||++.. ..|+.+.... ....-.|+|.|..++.-+ .|||+++.+.+
T Consensus 1247 ndG----vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 NDG----VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred eCc----eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 432 58999865 4444433222 112227999999887754 58999887654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-06 Score=81.76 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred CCcEEEEEcCCCCceeEEecc-C-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe--eEEEEecCCC
Q 008393 350 DKTVRVWDADNPGYSLRTFMG-H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHLG 425 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~-h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~~~~ 425 (567)
+|.|..||..+ ++.+-...- . .....+..+ +++..++ +++.++.|..||..+++.+..+.... ... ....++
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG 77 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence 68899999987 444443332 1 122222222 2345455 66789999999999999887776421 111 244568
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEe-cCCCC---CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 426 RYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~---~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
.+++++.++.|+.+|.++++.+... ..... ....+....++..++.+..+ .|..+|+++| +.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 8888889999999999999999884 43211 11222233337778888866 9999999888 555555443322
Q ss_pred ----------eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 501 ----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 501 ----------i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..-.+..++ .++++..++.+..+|+.+++..- ......+..+ ...++..|+.++.|+.|..||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222344 78888888854444999998662 2223333332 346777888888899998886
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=85.14 Aligned_cols=165 Identities=13% Similarity=0.150 Sum_probs=108.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeEEEEeC-----CC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-----dg 351 (567)
...+.+..|+++-.+-+.+--++.+++++.||.+.+++.+.. .....+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 344555677777777777777889999999999999998752 111222211111122233334444444321 23
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----EEEeCCeeEEEEecCC-CE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 426 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~-~~ 426 (567)
..++|+++..+..+.... ....|.+++-+|.-.+++++|+.||.+.+||.+..... +..+.++..+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 467788775332222222 23349999999999999999999999999999987432 2345567778888854 56
Q ss_pred EEEEECCCeEEEEECCC
Q 008393 427 YLAAAAENVVSILDAET 443 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~ 443 (567)
|++++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 88888899999888765
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.4e-07 Score=85.84 Aligned_cols=245 Identities=12% Similarity=0.088 Sum_probs=151.0
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 353 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I 353 (567)
+|+....+.+|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|+.|...|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3445567889999999999999877 7888999999999999999999999888 7899999987654 77888889999
Q ss_pred EEEEcCCCCceeEEecc--CCCcEEEEEEcC------CCCeEEEEEeCCCcEEEEECCCC----eeeEEEeCC--eeEEE
Q 008393 354 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGG--TAQMR 419 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p------~~~~li~s~~~dg~I~iwd~~~~----~~~~~~~~~--~~~~~ 419 (567)
.|||++.....+..+.+ ...+|..++.-+ .+. +++.... .+..|++.-. .++..+..+ ...+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999876554444433 234455554432 222 3322222 3556655432 222333322 33344
Q ss_pred EecCCCEEEEEECCC--------eEEEEECCCCeEEEEec-CC-CCC------eeEEEEcCCCCEEEEEeCC--eEEEEe
Q 008393 420 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 481 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg--------~I~i~d~~~~~~~~~~~-~h-~~~------V~~l~~sp~g~~l~s~s~d--~I~iwd 481 (567)
+.+..+.+++....+ .+.-.|..+|..+...+ ++ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 555556666666531 11122333443332221 11 010 0112223466777776666 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEE-eCCCCeEEEEEcCCeEEEEECC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~-sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
..+. ..+.++... .++..++. .-++.-++..-.|..+.||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9877 556666554 56666553 4455555555666778887654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-07 Score=94.20 Aligned_cols=174 Identities=16% Similarity=0.183 Sum_probs=128.5
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEeCCe-eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 388 ICSCDGDGEIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
++.|+.-..+..+|+++.+..+...-.. .+..+..++..+++|...|+|.+-|.++.+.++++..|.+.|..+. -.|
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~G 227 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQG 227 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccC
Confidence 4467777789999999988877665433 2333444557788888899999999999999999999999997654 568
Q ss_pred CEEEEEeC---------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEE---CCCCcE
Q 008393 467 ELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENKT 532 (567)
Q Consensus 467 ~~l~s~s~---------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd---~~~~~~ 532 (567)
++|++|+. | .|+|||+++......+. .+.++ .-+.|+|.. ..+++++..|...+-| +.+...
T Consensus 228 NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 228 NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred CeEEEeecccccccccccchhhhhhhhhhhccCCcc---cccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 88998874 4 58999998764333332 22222 345778864 4688888899999998 443322
Q ss_pred E--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
- .+......+.++++++++..+|.|..+|.|.+|.
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 2333344599999999999999999999999993
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-06 Score=75.78 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=109.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCC------CeEEEEeCCCcEEEEE
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRVWD 357 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~------~~l~s~s~dg~I~iwd 357 (567)
.-++||||+.+||.+...|+|++||+.. ..+..+.. -...|..+.|.+.. ..|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 3689999999999999999999999864 33334332 23567778785532 2577778888888877
Q ss_pred cCC----CCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEE--E
Q 008393 358 ADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY--L 428 (567)
Q Consensus 358 ~~~----~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l--~ 428 (567)
+.. +......+. .+...|.++.|+|..+.|++.|.....-..+. ....+.++-++-.+..+. +
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcEEEc
Confidence 632 112222222 34678999999998766665554433211110 011111111111111111 1
Q ss_pred EEECCC------eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 429 AAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 429 ~~~~dg------~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
....++ ...++.+-+.+...........|..|..+|||.+||+.... .|.+|++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111111 11233333222222222346789999999999999999988 9999999765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.6e-07 Score=85.89 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee----eeeecccCccEEEEEECCCCCeEEEE---eCCCcEEEEEcCCCC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATS---SFDKTVRVWDADNPG 362 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~----~~~l~~h~~~V~~i~fsp~~~~l~s~---s~dg~I~iwd~~~~~ 362 (567)
+..+.+++++++||++..++...++++..... ..... -...-+++.|..+...+..+ ++...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34566788888999888888877777653322 22221 12223444454444444444 4445555666554
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
.....+-||-..++.++|+||+. +|++++.|..|++-.......+..|- ..+..++..++ ..|+.++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 34456678999999999999975 55599999999998877666555543 23455666655 45899999999999
Q ss_pred EECCCCeEEEEec
Q 008393 439 LDAETQACRLSLQ 451 (567)
Q Consensus 439 ~d~~~~~~~~~~~ 451 (567)
||+++++.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998886654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=89.70 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=124.6
Q ss_pred EEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC----Ccee
Q 008393 292 CCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSL 365 (567)
Q Consensus 292 ~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~----~~~~ 365 (567)
.|+|+-+ |-. ++.|.+-.|-+-|++++-.-. +. ....|.++.|.-.+++++.|+..|.|..+|++.. +.+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466542 223 445567788888888764332 22 5567899999998999999999999999999864 4555
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eEEEeCCeeEEE-----EecCCCEEEEEECCCeEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~~~dg~I~ 437 (567)
..+. |...|+++.........+++.+-+|+|++||++.-++ +..+.++++..+ +.+..+.+++++.|...+
T Consensus 293 ~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 5554 8999999987763334455778899999999998777 888888876544 566778899999999999
Q ss_pred EEECCCCeEEEEecCCC----CCeeEEEEc
Q 008393 438 ILDAETQACRLSLQGHT----KPIDSVCWD 463 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~----~~V~~l~~s 463 (567)
||.++.+..+.++.-.. ..+.+++|.
T Consensus 372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEecccCceeeccCCCCccccccccceehh
Confidence 99999998887766432 234455554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-05 Score=78.04 Aligned_cols=257 Identities=15% Similarity=0.150 Sum_probs=150.9
Q ss_pred cCCCCeEEEEe---------CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 296 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 296 s~dg~~lasg~---------~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877642 346799999999766555444 66788999999999998886 46799998876322212
Q ss_pred EeccC----------------CCcEEEEEEcCCCCeEEEEEeCCCcEEEE------------------------------
Q 008393 367 TFMGH----------------SASVMSLDFHPNKDDLICSCDGDGEIRYW------------------------------ 400 (567)
Q Consensus 367 ~~~~h----------------~~~V~~l~~~p~~~~li~s~~~dg~I~iw------------------------------ 400 (567)
+..+. -+.-..+-|+||++++++.--.+..|..+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 11235678999999888765555544444
Q ss_pred -----ECCCCeeeEEE-e-------CCeeEEEEecCCCEEEEEECC-----CeEEEEECCCCeEEEEecC-CCCCe---e
Q 008393 401 -----SINNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI---D 458 (567)
Q Consensus 401 -----d~~~~~~~~~~-~-------~~~~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~-h~~~V---~ 458 (567)
|+.+++....- . .-...+.|.+++..+++.-.+ ..+.++|..++++...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33333221110 0 013456788887755555442 2677788877644333322 22332 3
Q ss_pred EEEEc-CCCCEEE-EEeCC---eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEcC-----CeEEEEEC
Q 008393 459 SVCWD-PSGELLA-SVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWNM 527 (567)
Q Consensus 459 ~l~~s-p~g~~l~-s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~d-----g~I~iwd~ 527 (567)
.+.|. +++..++ ....+ .|.+++...+ ....+....-.|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 56665 6655444 33343 5777777654 23455545555644 6788988877765553 26788888
Q ss_pred C-CCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 528 S-ENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 528 ~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
. .+....+....+....+.|||++++++-..
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 666666655444446999999999877543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-05 Score=84.15 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=147.9
Q ss_pred CCCCeEEEEeC-CCcEEEEeCCCCeeeeeecc-cCccEEEEEEC--CCCCeEEEEe------------------CCCcEE
Q 008393 297 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSS------------------FDKTVR 354 (567)
Q Consensus 297 ~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fs--p~~~~l~s~s------------------~dg~I~ 354 (567)
.||+||+.-.. ...|-..+++.+++...+.- ....+..++|- |+..|++.++ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888887653 56677777777766555441 12223333332 3333433332 234566
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe--C-CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--G-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~--~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (567)
+.|.++ .+....+.- .+....++++++++++++++. + ..++...+..+...+..|.-.. ...+.++++...+
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 666665 333333221 224456788899888776652 1 2334444443333222222110 1123445665554
Q ss_pred CCCeEEEEECCC-----CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCC---------CceEEEee
Q 008393 432 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 495 (567)
Q Consensus 432 ~dg~I~i~d~~~-----~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~---------~~~i~~~~ 495 (567)
.++.|.++|.++ .+.+..+. -......+.++|||+++++++.- +|.|+|+.+.+. ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34444444 34567889999999999988865 899999987532 11233333
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC----------CcEE-EeccccCCee-----EEEEecCCCEEEEEE
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLIA-----ALAVSTETGYVASAS 558 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~----------~~~~-~~~~h~~~V~-----~l~~spdg~~l~s~s 558 (567)
. +..-...+|.++|....+..-|..|..||+.+ ...+ .+.-|-.+.. .=.-.+||++|++..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 3 33344568999998888888899999999876 2222 2333322221 112368899988764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-07 Score=88.77 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=144.0
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC--CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCC
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINN 404 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~ 404 (567)
|.+.|+.+.-. ..+++++++.||.++.|.-.. .-..+..+..|.+.|.+++.+-++ .+++|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeec
Confidence 67777776544 456999999999999998653 223455667788999999998885 57778676 99999999988
Q ss_pred CeeeEEEeC--CeeEEEEecCCC----EEEEEE-CCCeEEEEECCCCe--EEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 405 GSCTRVFKG--GTAQMRFQPHLG----RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 405 ~~~~~~~~~--~~~~~~~~~~~~----~l~~~~-~dg~I~i~d~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
-..+..++- -...+.|....+ .+++.. .++.+.++|-.... ....-.-|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 765533332 122233322222 333333 37899999987653 334445599999999999999999888877
Q ss_pred -eEEEEeCCC-CCC-----------CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 476 -SVRVWTVGS-GSE-----------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 476 -~I~iwd~~~-~~~-----------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.|.-|.... ... ...+..+.-......++.|+|++..+.+.+.|..|+++++++++
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 899999863 100 01122233345567889999999999999999999999999887
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=84.02 Aligned_cols=110 Identities=20% Similarity=0.405 Sum_probs=79.2
Q ss_pred EcCCCCeEEEEeC-----CCcEEEEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 295 FSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 295 ~s~dg~~lasg~~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
+...++++.+++. -+..++|+++..+....-..-...|.+++-+|.. ..+++|+.||.+-+||.++...+...+
T Consensus 140 ~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l 219 (319)
T KOG4714|consen 140 ICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL 219 (319)
T ss_pred eeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH
Confidence 3334555554431 2344556554333222222233448999998864 467888899999999999877777888
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..|+.++..+-|+|....-++++++||.+..||..+
T Consensus 220 ~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999998777777999999999999875
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.3e-05 Score=69.19 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=137.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 377 (567)
-|++++.|...|.+++.++++|.....+......-......+++..|..|+.|++.+..|..+ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 367899999999999999999988777664433223344567888999999999999999998 5555555543343344
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--Ee--CCe--eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~--~~~--~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
-+..+-...++ .+...|.|.--..+....... +. +++ ..++. +..+..++-||.+.-+| ..++.++.+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 45555333344 334455555555554421111 11 111 11111 24455666677777777 5556665544
Q ss_pred CCCCCeeE-EEEc-CCCCEEEEEeCC---------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC----CCCeEEEE
Q 008393 452 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 516 (567)
Q Consensus 452 ~h~~~V~~-l~~s-p~g~~l~s~s~d---------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp----~~~~l~~~ 516 (567)
. .++|.. -+-+ |....|..+.++ .-.+|...++ ...+...... ....++. ..++|..+
T Consensus 216 t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 T-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred C-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence 2 233321 1122 333444444444 2345655544 1111111110 0112211 13456778
Q ss_pred EcCCeEEEEECCCCcEEEeccccCCeeEE---E-----E-ec---CCCEEEEEECCCcEEEcC
Q 008393 517 GCYQSLELWNMSENKTMTLTAHEGLIAAL---A-----V-ST---ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~-----~-sp---dg~~l~s~s~Dg~I~iWd 567 (567)
+.||++.|.-.+.. ......|.+.+..+ . | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88999888844322 11222333222221 1 1 22 44 577788898999886
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-05 Score=87.74 Aligned_cols=240 Identities=13% Similarity=0.159 Sum_probs=150.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
.+.|.++.|.-++.-++.+..+|.|.+-|.++.... ....-...|.++.|+||+..++..+.++++.+-+-. -.++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccchh
Confidence 368999999999999999999999999988765432 223345679999999999999999988887765432 11111
Q ss_pred --Ee---ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---EEEeCCeeEEEEecCCCEEEEEEC----C-
Q 008393 367 --TF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAA----E- 433 (567)
Q Consensus 367 --~~---~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~----d- 433 (567)
.+ ....+....+-|-.....+ -|+ .|.....+....+.. .....+...+.|--+|.++++... +
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 11 0111222334443322111 111 222222221111111 013345677889999888877432 3
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~ 509 (567)
..|++||.+ +..-..-....+--.+++|-|.|.++++... + .|.+|.-+..........+......+..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 799999988 4322222222344568999999999998753 3 6999987654444444445555555899999999
Q ss_pred CCeEEE---EEcCCeEEEEECCCCcEE
Q 008393 510 YPSLLV---IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 510 ~~~l~~---~~~dg~I~iwd~~~~~~~ 533 (567)
+..|++ ......|++|-+.+...+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEE
Confidence 998888 344446999998876644
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-05 Score=81.96 Aligned_cols=254 Identities=13% Similarity=0.123 Sum_probs=149.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc------EE--EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL------IT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~------V~--~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
+..+++++.++.|..+|..+++.+..+...... +. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 346667777899999999999988776543320 10 11111 225888888999999999998 444433332
Q ss_pred CCCc-----EE-EEEEcCCCCeEEEEEe---------CCCcEEEEECCCCeeeEEEeCCe--------------------
Q 008393 371 HSAS-----VM-SLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 415 (567)
Q Consensus 371 h~~~-----V~-~l~~~p~~~~li~s~~---------~dg~I~iwd~~~~~~~~~~~~~~-------------------- 415 (567)
.... +. ...+.. ..++ .++ .++.|..+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--CEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2110 11 122221 2333 443 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEECCC------------------eEEEEECCCCeEEEEecCCCCCee------EEEEc----
Q 008393 416 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD---- 463 (567)
Q Consensus 416 ----~~~~~~~~~~~l~~~~~dg------------------~I~i~d~~~~~~~~~~~~h~~~V~------~l~~s---- 463 (567)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1234455667888887665 799999999999988753111110 01111
Q ss_pred CCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE------------------EcCCe
Q 008393 464 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 521 (567)
Q Consensus 464 p~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~------------------~~dg~ 521 (567)
-+|. +++.++.+ .+..+|.++++ .+...... ...++.+| ..++++ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2343 56677777 89999999884 34333211 11123333 333332 23578
Q ss_pred EEEEECCCCcEE-Eeccc--c------CCe--eEEEEecCCCEEEEEECCCcEEEcC
Q 008393 522 LELWNMSENKTM-TLTAH--E------GLI--AALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 522 I~iwd~~~~~~~-~~~~h--~------~~V--~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.-+|+.+++.+ ..... . .+. ..+. -.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence 999999999877 22211 0 111 1222 2456788888888887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=82.35 Aligned_cols=221 Identities=12% Similarity=0.133 Sum_probs=123.2
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
..-....+.++|+|+++++ +.||...||.... ... .. .+.-...+|...+. +++-...+.|.|+.--+.+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~-k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRN-KA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEE-EE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccc-cc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCcccc
Confidence 4445788999999999888 5567777887443 221 11 23345678887543 44666688899974333333
Q ss_pred eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCC--
Q 008393 408 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG-- 485 (567)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~-- 485 (567)
.+.++.+...-.+.. +.++....++.|.+||..+++.+..+... +|..+.|+++|++++..+.+.+.|++....
T Consensus 102 ~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp T-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred ceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 334444432222222 55555556669999999999999998743 489999999999999999987777765421
Q ss_pred ------CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 486 ------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 486 ------~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
.....+..+......|.+.+|..+ .++..+.. .|+. +..|+...+..-..++.=+.+.+..+.|.....
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEEC
Confidence 001134444433677888899877 34444444 6666 556666666555667777888887778888888
Q ss_pred CCcEEEc
Q 008393 560 DKFVKLW 566 (567)
Q Consensus 560 Dg~I~iW 566 (567)
|+.|..+
T Consensus 253 ~~~v~~~ 259 (443)
T PF04053_consen 253 DGNVISY 259 (443)
T ss_dssp T--EEEE
T ss_pred CCCEEEE
Confidence 8877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=61.18 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEe
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd 315 (567)
+.+..+++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00027 Score=70.29 Aligned_cols=265 Identities=13% Similarity=0.117 Sum_probs=136.6
Q ss_pred EEcCCCCeEEEEeC-CC--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 294 HFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 294 ~~s~dg~~lasg~~-dg--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
+|..||+.|+.++. || .+.+.|+.+++...--.+.........++++.+.|+-......|+..|+++ .+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC
Confidence 57889976666554 44 577778888876665544323333566778888887766667899999998 444445555
Q ss_pred CCCcEEEEEEc--CCCCeEEEEEe----------------------CCCcEEEEECCCCeeeEEEeCC--eeEEEEecCC
Q 008393 371 HSASVMSLDFH--PNKDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 424 (567)
Q Consensus 371 h~~~V~~l~~~--p~~~~li~s~~----------------------~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~ 424 (567)
....+-...|. .++.. ++..- -.+.|...|+.+++....+... ...+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55555555553 33333 32211 1235667788888776666544 4778899998
Q ss_pred CEEEEEECCC-------eEEEEECCCCeEEEEecCCCC--CeeEEEEcCCCCEEEEEe-----CC-eEEEEeCCCCCCCc
Q 008393 425 GRYLAAAAEN-------VVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 425 ~~l~~~~~dg-------~I~i~d~~~~~~~~~~~~h~~--~V~~l~~sp~g~~l~s~s-----~d-~I~iwd~~~~~~~~ 489 (567)
..+++-+.+| .|.+.+.... ....+..+.. .+..=-|.+||..|..-+ .+ .|.-+|+.++.. .
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 8888877643 4444454333 3333333322 234446899998766543 24 577788877633 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCC----------------eEEEEECCCCcEEEeccccC-----------Ce
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LI 542 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----------------~I~iwd~~~~~~~~~~~h~~-----------~V 542 (567)
.+... .....+-.++||++++-=+.|. -|+++++..+....+..|.. .=
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22222 2344556678888554433331 57788888877654433321 12
Q ss_pred eEEEEecCCCEEEEEE-CCCcEEEc
Q 008393 543 AALAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 543 ~~l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
-.+.|+||+++|+..+ ..|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 3578999999876555 46766554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-05 Score=82.03 Aligned_cols=271 Identities=11% Similarity=0.099 Sum_probs=153.2
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
|...|.--+++..+++++.|+..|.+++|+-..++....-. +-...+..+..+++..++|.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34455556777788999999999999999987665443322 34455666778888888999999999999988753221
Q ss_pred eE-----EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----eeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 365 LR-----TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 365 ~~-----~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
-. .-..|...|++++|++++..++ +|..-|.|..-.+.... ....+......+.++.-..++++++.-.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 11 1124788999999999988766 99999999998887721 1112222223333444445555554433
Q ss_pred eEEEEECCCCeE--EEEecCCCC-CeeEEEEcCC----CCEEEEEeCCeEEEEeCCCCCCCceEEEeecC----------
Q 008393 435 VVSILDAETQAC--RLSLQGHTK-PIDSVCWDPS----GELLASVSEDSVRVWTVGSGSEGECVHELSCN---------- 497 (567)
Q Consensus 435 ~I~i~d~~~~~~--~~~~~~h~~-~V~~l~~sp~----g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~---------- 497 (567)
.+ +++.+.+.. +-+-. .++ .-...||-|. .+-.+.++.-..|+|..+-.. ..+.+....
T Consensus 191 ~~-Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 191 CI-LCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hh-eeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCCc
Confidence 32 333332221 11100 111 1234566554 233333444357788765221 111111100
Q ss_pred ---C----------------CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 498 ---G----------------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 498 ---~----------------~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
. -....+.+- .+..+++-+.-| |||+|..+...+........|..++. +++-|+.--
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~--~~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSH--CGNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEee--cCceEEEEe
Confidence 0 001111111 122344444444 99999988877766545555666654 345555555
Q ss_pred CCCcEEE
Q 008393 559 HDKFVKL 565 (567)
Q Consensus 559 ~Dg~I~i 565 (567)
.|+.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 6665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-07 Score=60.20 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=37.0
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-05 Score=81.50 Aligned_cols=203 Identities=14% Similarity=0.256 Sum_probs=136.1
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCC-----
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 405 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~----- 405 (567)
+|++.+..++.|+.+|.|.+++-. -..++.+..+...+...-+.-++..++++.++|+ .|+||+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999988777653 3445677777766333334445545666666654 4899998743
Q ss_pred -eee---EEEe-------CCeeEEEEecCCCEEEEEECCCeEEEEECCC----CeEEEEecCCCCCeeEEEEcCCCCE-E
Q 008393 406 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 469 (567)
Q Consensus 406 -~~~---~~~~-------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~~V~~l~~sp~g~~-l 469 (567)
.++ +.+. .+...++++.+-..+++|-.+|.|..+.-+- +....-......+|+.+++..+++. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 234 2222 2456788888888999999999999985321 1111112224678999999999987 4
Q ss_pred EEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-EEEec-cccCCee
Q 008393 470 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLT-AHEGLIA 543 (567)
Q Consensus 470 ~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-~~~~~-~h~~~V~ 543 (567)
.+++...|.+|.+.. +. .....+..++..+.|..+++....+++++. ..|++|+..... +..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 555555899999973 33 445567788888888888876664555543 579999987544 33555 5655443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-06 Score=90.04 Aligned_cols=193 Identities=19% Similarity=0.197 Sum_probs=139.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 377 (567)
++..++.|+....+..+|+.+.+..+........|+-++. ++++|++|...|+|.+-|..+ ...++++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-Cceeeeeeccccceee
Confidence 4557888888889999999998888877766655665554 578999999999999999998 7888999999999998
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCe
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
++.. |+ ++++||..+. ...-..|..|++||++..+.+.-+.-+.++
T Consensus 223 fDv~--GN-lLitCG~S~R------------------------------~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 223 FDVQ--GN-LLITCGYSMR------------------------------RYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred eecc--CC-eEEEeecccc------------------------------cccccccchhhhhhhhhhhccCCcccccCc-
Confidence 8876 44 5558875322 112234667788888776655554444443
Q ss_pred eEEEEcCC--CCEEEEEeCCeEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 458 DSVCWDPS--GELLASVSEDSVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 458 ~~l~~sp~--g~~l~s~s~d~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.-+.|.|. ..++++.+.+...+-|..+.. ....+..+......+..+.+++++..++.+..+|.|.+|.-
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33566663 334444444477777743332 22445555666777999999999999999999999999973
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-07 Score=86.72 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-----eeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~ 359 (567)
..+.|.++.|...+.++..|...|.|.++|+... .+...+ .|...|+++.... ++.+|.+.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5678899999998999999999999999999754 233333 4888999998877 78899999999999999998
Q ss_pred CCCce---eEEeccCCCcEEEEEE--cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 360 NPGYS---LRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 360 ~~~~~---~~~~~~h~~~V~~l~~--~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
- .++ +..+.||...-.-+-+ .+. +.+|++++.|...+||.++.+..+.+++.
T Consensus 330 ~-~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 A-TKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred h-hhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccCceeeccCC
Confidence 5 334 7888998765554444 333 45677899999999999999998877654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-06 Score=86.65 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...++|++++ +++|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4567788887 56999999999999998753 33 333345443 56799999999999999999987433 33
Q ss_pred EeccCCCcEEEEEEcCC----CCeEEEEEeCCCcEEEEECCC---Ce--eeEEEeCCeeEEEEecCCCEEEEEECCCeEE
Q 008393 367 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---GS--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
.+. ...++.+++++|+ ....+++|+.-| +.++.-+= .. ......|.+.++.|. +.+++-+.|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 333 4578999999998 223455888777 76665321 11 233445677777775 5577777888899
Q ss_pred EEECCCCeEEEEecCCCCCe------eEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 438 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V------~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
+||+.+.+.+..+......+ ..+.|.++. .|+.|-.|+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 99999998887766433332 357787654 5667777788888887
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00048 Score=67.32 Aligned_cols=255 Identities=11% Similarity=0.122 Sum_probs=157.5
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcCCCCceeEEec---cCC---
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFM---GHS--- 372 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~---~h~--- 372 (567)
+.+.|+|.++++.+-.+..- -.-.+..+|+++.++++. ..-.|.+||..+ -.....+. +|.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 47999999999988777632 233467899999888753 234599999987 33322221 111
Q ss_pred -CcEEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECC-CCeEEEE
Q 008393 373 -ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 449 (567)
Q Consensus 373 -~~V~~l~~~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~ 449 (567)
.....+.++.+++.+++.- +--..|.|.|+..++.+..+..+.+...+-.....+.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 1123456777877666432 224578899999999998888776666654445678999999999888887 4444322
Q ss_pred ----ecCCCCCe-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC----------CCceEEEEEeCCCCeE
Q 008393 450 ----LQGHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 513 (567)
Q Consensus 450 ----~~~h~~~V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~----------~~~i~~~~~sp~~~~l 513 (567)
|.....++ ..-++...+..++..+.. .|+-.|+... .......+... .+...-+++++..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD-SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS-SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC-cccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 22222222 234455555444445555 8888888643 22222222211 1123346888877767
Q ss_pred EEEEc---CC-------eEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEEEcC
Q 008393 514 LVIGC---YQ-------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~---dg-------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iWd 567 (567)
++.-. ++ .|.+||+.+++.+.-..-..++.+|..+.+.+ +|++.+ .++.|.+||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 66422 11 68999999999885444455688999998776 555544 578899886
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00084 Score=70.10 Aligned_cols=240 Identities=15% Similarity=0.122 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCeEEEE-eCC----CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC-----------cE
Q 008393 290 VICCHFSSDGKLLATG-GHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 353 (567)
Q Consensus 290 V~~l~~s~dg~~lasg-~~d----g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg-----------~I 353 (567)
+..+.+||||++||.+ +.. ..|+++|+++++.+...-.... ...+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999999865 233 3599999999977654311111 22399999988776665433 37
Q ss_pred EEEEcCCCCce-eEEeccCCCc--EEEEEEcCCCCeEEEEEeCC---CcEEEEECCCC-----eeeEEEeC--CeeEEEE
Q 008393 354 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGD---GEIRYWSINNG-----SCTRVFKG--GTAQMRF 420 (567)
Q Consensus 354 ~iwd~~~~~~~-~~~~~~h~~~--V~~l~~~p~~~~li~s~~~d---g~I~iwd~~~~-----~~~~~~~~--~~~~~~~ 420 (567)
++|++.+.... ...+...... ...+..+++++.+++..... ..|.+.++..+ ........ ......-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888874432 2344433332 66888999999888766554 35888888875 33333332 2222222
Q ss_pred ecCCCEEEEEEC----CCeEEEEECCCCe---EEEEecCCCCC--eeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCC
Q 008393 421 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGELLASVSED---SVRVWTVGSGSEG 488 (567)
Q Consensus 421 ~~~~~~l~~~~~----dg~I~i~d~~~~~---~~~~~~~h~~~--V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~ 488 (567)
+. ++.+++.+. .+.|...++.... ....+..+... +..+.... +.+++....+ .|+++++..+
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~--- 359 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDG--- 359 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-T---
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCC---
Confidence 22 555555444 3678888888764 23345555553 44444432 2334444444 6999999722
Q ss_pred ceEEEeec-CCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcEEEe
Q 008393 489 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 535 (567)
Q Consensus 489 ~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 535 (567)
.....+.. ..+.+..+...++.+.+...... .+++.||+.+++...+
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 23333332 23345555555666655443332 4899999999886643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00016 Score=76.93 Aligned_cols=211 Identities=13% Similarity=0.135 Sum_probs=141.0
Q ss_pred eeccCCccceeeeeeccCCC-CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-EEEEEECCCCCeEEE
Q 008393 269 MDVSQGFSFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLAT 346 (567)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~-~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp~~~~l~s 346 (567)
|.-..-|..+.+.....-.+ .|. +|++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++
T Consensus 6 WrrF~lFq~~~i~~~~~~~G~~is--c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~s 82 (933)
T KOG2114|consen 6 WRRFSLFQWKEIPSLENFVGNAIS--CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFS 82 (933)
T ss_pred cceeeeeeeeecCCcccCCCCcee--EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEE
Confidence 44434444444433232333 444 45678889999999999988863 45666778777777 444444444468888
Q ss_pred EeCCCc-----EEEEEcCCC-----Ccee---EEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC--C--C
Q 008393 347 SSFDKT-----VRVWDADNP-----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--N--G 405 (567)
Q Consensus 347 ~s~dg~-----I~iwd~~~~-----~~~~---~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~--~--~ 405 (567)
.+.|+. |+||+++.. ..++ +.+. ....++.+++.+.+ -..++.|-.+|.|..+.-+ . +
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc
Confidence 877654 899999742 1222 2221 12466888888877 4567788889999888532 1 1
Q ss_pred ee---eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE-EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEe
Q 008393 406 SC---TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 481 (567)
Q Consensus 406 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd 481 (567)
.. ...-+.+++.+.+..++..++.+.....|.+|.+....+ ...+..|...+.|..+++...-+++++...|.+|+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 11 112245788999998888867777778888998885553 34477788899999998766657777777899999
Q ss_pred CC
Q 008393 482 VG 483 (567)
Q Consensus 482 ~~ 483 (567)
..
T Consensus 242 sd 243 (933)
T KOG2114|consen 242 SD 243 (933)
T ss_pred CC
Confidence 86
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-05 Score=82.23 Aligned_cols=181 Identities=17% Similarity=0.251 Sum_probs=125.5
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
.+.+.|++++ ++.|+.|..+|.|++++... .. .+...|... ..+|. .+++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3446666665 56899999999999999875 22 344445444 44555 5669999999999998887655
Q ss_pred --EEEeCCeeEEEEecC-----CCEEEEEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEE
Q 008393 409 --RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 479 (567)
Q Consensus 409 --~~~~~~~~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~i 479 (567)
..|+.+...++++|+ .+.+++|+..| +.++.-+-. +.-..+....++|.+++|. |+++|-++++.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 456778899999998 46788888888 777654321 1111455567899999997 77898888889999
Q ss_pred EeCCCCCCCceEEEeecCCC------ceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 480 WTVGSGSEGECVHELSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~~~~~------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
||+.++. .+..+..... ....+.|.++. .++.|...+|+|..++.
T Consensus 184 yd~~~~~---~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQ---RLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGDSVKICSIKK 234 (846)
T ss_pred Eeccccc---eeeccCCCCCCCCcccCCCceEecCCC--eEEEecCCeEEEEEEec
Confidence 9998763 3333222211 13345676665 35556666888888873
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00099 Score=68.46 Aligned_cols=251 Identities=16% Similarity=0.140 Sum_probs=166.5
Q ss_pred EEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEE
Q 008393 311 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 311 I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~ 389 (567)
+.+++..+.+....+..+. ....+.+.+++..+..... ...+.+.+... .........-...-..+++.+.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5666666655555554333 4566788888865544432 22344444441 2211111111144557888899888888
Q ss_pred EEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcC
Q 008393 390 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 464 (567)
Q Consensus 390 s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp 464 (567)
....++.|.+.|..+.+......- ....+.++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888887766553 4567899999988888777 689999999999888775544445 8899999
Q ss_pred CCCEEEEEeC-C-eEEEEeCCCCCCCc-eEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEEe--c
Q 008393 465 SGELLASVSE-D-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTL--T 536 (567)
Q Consensus 465 ~g~~l~s~s~-d-~I~iwd~~~~~~~~-~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~--~ 536 (567)
+|+.++.+.. + .|.++|........ ...........-..+.+.+++.++++.... +.+...|..++..... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 9997777763 3 89999976542110 000012223344667999999988877665 4899999999887744 2
Q ss_pred cccCCeeEEEEecCCCEEEEEECC-CcEE
Q 008393 537 AHEGLIAALAVSTETGYVASASHD-KFVK 564 (567)
Q Consensus 537 ~h~~~V~~l~~spdg~~l~s~s~D-g~I~ 564 (567)
.-......+.++|+|+++.+.... +.|.
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 111156678899999988776433 4443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-05 Score=80.15 Aligned_cols=191 Identities=13% Similarity=0.242 Sum_probs=127.3
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEEEEC-CC-
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 434 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d---g~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg- 434 (567)
+.....+..-...+..-+|+|++..+.+..-.. ..+.++|++++..... +.+......|+|++.+++.+.. ++
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 344455555566778888999988876654333 3499999998876554 4566777889999999887776 44
Q ss_pred -eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC
Q 008393 435 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509 (567)
Q Consensus 435 -~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~ 509 (567)
.|+++|+.++.... +....+.-..-.|+|||++|+..++. .|.+++++.... ..+......-..-.|+||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 78888988877433 44333434467899999999988765 477778765432 223222333336689999
Q ss_pred CCeEEEEEcC-C--eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEE
Q 008393 510 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 510 ~~~l~~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
|++|+..+.. | .|.++|+.++.......+........|.++++.|...
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 9999888754 3 4788888776644443444444455566666655443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=70.88 Aligned_cols=215 Identities=9% Similarity=0.060 Sum_probs=141.5
Q ss_pred eeeeCCCcchhhcccccccCCCCC------CceEEeeccCCCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcC
Q 008393 224 QLWDDKDLELRADMDRLVEDGSLD------DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 297 (567)
Q Consensus 224 ~~Wd~~~g~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 297 (567)
.+||..+|+....+.......-++ +.-..+..+.+.....+.+.+||... .+..+..+..|.-.-..+.+.|
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcC
Confidence 577888876655444222211111 11233444555556666778899874 4677888888877777899999
Q ss_pred CCCeEEEEe------------------CCCcEEEEeCCCCeeeee--e--cccCccEEEEEECCCCCeEEEEeCCCc---
Q 008393 298 DGKLLATGG------------------HDKKAVLWHTDTLKSKTN--L--EEHSSLITDVRFSPSMPRLATSSFDKT--- 352 (567)
Q Consensus 298 dg~~lasg~------------------~dg~I~vwd~~~~~~~~~--l--~~h~~~V~~i~fsp~~~~l~s~s~dg~--- 352 (567)
||+.|+++. .+-.+.+.|..+|+.+.. + ..|...|+.+++.++|..++..-..|.
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 998887763 223466667788888776 4 348889999999999977776655442
Q ss_pred ----EEEEEcCCCCceeE----EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-eeEEEEecC
Q 008393 353 ----VRVWDADNPGYSLR----TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPH 423 (567)
Q Consensus 353 ----I~iwd~~~~~~~~~----~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~ 423 (567)
|.+++....-..+. ......+.|-+|+++.++..+++|+-..+.+.+||..+++.+....-. ...++...+
T Consensus 189 ~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~ 268 (305)
T PF07433_consen 189 APPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDD 268 (305)
T ss_pred cCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCC
Confidence 44554443111110 112345789999999999988889999999999999999998877643 334444444
Q ss_pred CCEEEEEECCCeEEEEECC
Q 008393 424 LGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~ 442 (567)
+ +++.+..|.+......
T Consensus 269 ~--f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 269 G--FLVSSGQGQLIRLSPD 285 (305)
T ss_pred c--eEEeCCCccEEEccCc
Confidence 3 6666656665444433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00037 Score=66.21 Aligned_cols=198 Identities=14% Similarity=0.189 Sum_probs=115.7
Q ss_pred eeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeeccc-CccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+.+.+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455666677799999999755 5666677788888886 47887776533 35688899988887777766789999999
Q ss_pred cCCCCce-----eEEe-----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---CeeeEE-----------EeC
Q 008393 358 ADNPGYS-----LRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 413 (567)
Q Consensus 358 ~~~~~~~-----~~~~-----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~---~~~~~~-----------~~~ 413 (567)
+...... +..+ ..++..+..|+|.+.++.|+++ -+..-..+|.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceec
Confidence 8542211 1111 1345668999999998888855 4555566666553 222211 122
Q ss_pred CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCCeEEEE
Q 008393 414 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 480 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d~I~iw 480 (567)
....+.++|..+.+++-+. ...|.++| .+|+.+..+.-.. ...-.|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4577889999888877776 56888888 6666555443222 24678999999987766544444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00094 Score=68.81 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 477 VRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
-.+|++...+ .+++.... .....+.+++++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.+|+
T Consensus 238 ~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEE
Confidence 4667775432 33333222 4567899999999999999999999999999987754433 4445688999999999999
Q ss_pred EEECCCcEEEcC
Q 008393 556 SASHDKFVKLWK 567 (567)
Q Consensus 556 s~s~Dg~I~iWd 567 (567)
+|+.-|.|.+||
T Consensus 316 V~s~qGelQ~FD 327 (545)
T PF11768_consen 316 VGSEQGELQCFD 327 (545)
T ss_pred EEcCCceEEEEE
Confidence 999999999997
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00029 Score=74.24 Aligned_cols=180 Identities=8% Similarity=-0.053 Sum_probs=112.8
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECC----CeEEEEECCCCeEEEEecCCC
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~~~~~~~~h~ 454 (567)
.++|..+..+.-..+.+.+.|..+.+....+. +....+.++++++++++.+.+ ..+...+..+...+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~- 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA- 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence 44555444444445677778888776665543 233457788998888888632 24444444333322222211
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCC-C-CCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCc
Q 008393 455 KPIDSVCWDPSGELLASVSEDSVRVWTVGSG-S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK 531 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~-~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~ 531 (567)
.+ .++.++|++... ..+.|.++|..+. . ....+..+ .-....+.+.++|||+++++++. +.+|.|+|+.+.+
T Consensus 280 -~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 280 -RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred -HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 01 133467887665 3348999998761 0 11233333 34666788999999999988876 6799999998755
Q ss_pred E------------E-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 T------------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ~------------~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. . .... .......+|.++|..+.|.-.|..|..||
T Consensus 355 ~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 2 2 2222 22344568899998888888899999996
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=82.37 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=159.3
Q ss_pred EEEEcCCCCeEEEEe----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 292 CCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 292 ~l~~s~dg~~lasg~----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
-..|+|...+||+++ ..|.|.|| .++|++-..... .-.+++++|+|..-.|+.|=.-|.+.+|...+ .+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCC-ceeeee
Confidence 357888888888776 46888888 567765443321 12256799999988899999999999999987 444444
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee------------------EEEe---------------CC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------------RVFK---------------GG 414 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~------------------~~~~---------------~~ 414 (567)
...|..+|..+.|+++|..++ ++..-|.|.+|...-...+ ..+. +.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 557999999999999998666 9999999999987621111 0000 00
Q ss_pred eeEE-----------------EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e
Q 008393 415 TAQM-----------------RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 476 (567)
Q Consensus 415 ~~~~-----------------~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~ 476 (567)
...+ .-.|++..+++++.+|+|+..|-... +....+.. +. ..+-|.+-..-|++.-.+ +
T Consensus 176 e~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~-~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr 252 (1416)
T KOG3617|consen 176 ESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGR-QRTVHKLD-SE-VQMLFMGYCEAISIIIEFLR 252 (1416)
T ss_pred hhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCc-EEEEEEcc-ch-HHHHHhcccceEEEEeeece
Confidence 0000 12345667888888999888875433 22222211 11 123344444444444444 4
Q ss_pred EEEEeCCC-CC------------CCce------------E---EEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 477 VRVWTVGS-GS------------EGEC------------V---HEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 477 I~iwd~~~-~~------------~~~~------------i---~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
+.++-+.. |. .+.. + ..+ ...+..+.++++...+..|+.|...|.+++|--
T Consensus 253 ~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 253 DCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred eeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence 43333321 10 0000 0 000 112556899999999999999999999999953
Q ss_pred CCC--------cEEEe---ccccCCeeEEEEecCCCEEEEE
Q 008393 528 SEN--------KTMTL---TAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 528 ~~~--------~~~~~---~~h~~~V~~l~~spdg~~l~s~ 557 (567)
... ....+ ....+.|+.+.|.|-...++.-
T Consensus 333 v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 333 VNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred cCccccCCCCcceEEecCchhhccceEEEEeccccchhhhh
Confidence 322 11222 3345679999998865554443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00039 Score=73.95 Aligned_cols=222 Identities=14% Similarity=0.163 Sum_probs=130.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-----EE-EEEECCCCCeEEEEe---------CCCcEEEEEcCCCCce
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----IT-DVRFSPSMPRLATSS---------FDKTVRVWDADNPGYS 364 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-----V~-~i~fsp~~~~l~s~s---------~dg~I~iwd~~~~~~~ 364 (567)
..++.++.++.|+.+|.++++.+......... +. ...+. +..++.++ .+|.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~- 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL- 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce-
Confidence 57778888999999999999999887643321 11 11222 23455553 367888999988443
Q ss_pred eEEecc-CC-------------------CcEE-EEEEcCCCCeEEEEEeCCC------------------cEEEEECCCC
Q 008393 365 LRTFMG-HS-------------------ASVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNG 405 (567)
Q Consensus 365 ~~~~~~-h~-------------------~~V~-~l~~~p~~~~li~s~~~dg------------------~I~iwd~~~~ 405 (567)
+-.+.. .. ..|. ...+.+.+. +++.++.++ .|.-+|++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 333221 11 0111 233444444 444565554 7999999999
Q ss_pred eeeEEEeCCee---------EEEEe----cCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEE
Q 008393 406 SCTRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 406 ~~~~~~~~~~~---------~~~~~----~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 469 (567)
+.+..+..... ...+. -++. .+++++.+|.+..+|.++++.+...... ...++.+| ..+
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~v 341 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLV 341 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceE
Confidence 99887653211 01111 1222 4677778999999999999998876421 11233333 222
Q ss_pred EEEe------------------CC-eEEEEeCCCCCCCceEEEeecCC--------CceEEEEEeCCCCeEEEEEcCCeE
Q 008393 470 ASVS------------------ED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 470 ~s~s------------------~d-~I~iwd~~~~~~~~~i~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
+.+. .+ .|.-+|+.++ +.+....... .....-...-.+..|++++.+|.|
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l 418 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYF 418 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeE
Confidence 2211 23 6777787776 3333332220 111111112255679999999999
Q ss_pred EEEECCCCcEE
Q 008393 523 ELWNMSENKTM 533 (567)
Q Consensus 523 ~iwd~~~~~~~ 533 (567)
+.+|..+++.+
T Consensus 419 ~ald~~tG~~l 429 (488)
T cd00216 419 RAFDATTGKEL 429 (488)
T ss_pred EEEECCCCcee
Confidence 99999999988
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=75.70 Aligned_cols=195 Identities=16% Similarity=0.176 Sum_probs=124.9
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEe---CC-CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSS---FD-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s---~d-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d 394 (567)
+.....+......+..-+|+|++..++... .. ..+.++|++++... .... ..+.-...+|+|||+.++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~-~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILN-FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeec-cCCccCCccCCCCCCEEEEEECCC
Confidence 445555555566677889999998765542 22 45899999874432 2221 333445678999999999998888
Q ss_pred Cc--EEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC
Q 008393 395 GE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 467 (567)
Q Consensus 395 g~--I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~ 467 (567)
|. |+++|+..+...+.. .+....-.|+|+|..++..+.. | .|.++|.+......... ....-..-.|+|||+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG~ 338 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDGD 338 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCCC
Confidence 86 555677776643321 1223456799999999888774 3 78888888876533222 222222778999999
Q ss_pred EEEEEeC--C--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 468 LLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 468 ~l~s~s~--d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
+|+..+. + .|.+.|+.++.. +..+ ........-.|.+++..++..+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 9998883 3 477777766543 2222 1222233347888888777665543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00093 Score=68.03 Aligned_cols=227 Identities=18% Similarity=0.190 Sum_probs=131.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-c---------------c-CccEEEEEECCCCCeEEEEeC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-E---------------H-SSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~---------------h-~~~V~~i~fsp~~~~l~s~s~ 349 (567)
...+....|||+|+.+|... ++.|.+++..++.....-. + . -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67788999999999999885 7899999987774443221 2 0 122356889999999887643
Q ss_pred C-Cc-----------------------------------EEEEEcCCCCce-eEEe---ccCCCcEEEEEEcCCCCeEEE
Q 008393 350 D-KT-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 350 d-g~-----------------------------------I~iwd~~~~~~~-~~~~---~~h~~~V~~l~~~p~~~~li~ 389 (567)
| .. +.|+|+.++... +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 233444432211 1111 123455778889888774443
Q ss_pred E-EeCC---CcEEEEECCCCeeeEEEeC-------CeeEEEEe-cCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCC
Q 008393 390 S-CDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 390 s-~~~d---g~I~iwd~~~~~~~~~~~~-------~~~~~~~~-~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~ 454 (567)
. ...+ ..+.++|..++.+...+.. ......+. +++..++..+. +| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 3 3333 2467778877665443321 22345554 66666665554 55 6778888887755 555455
Q ss_pred CCeeE-EEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 455 KPIDS-VCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 455 ~~V~~-l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
-.|.. +.|+++++.|+..+.. .|+..++..+ ..+..+......-..+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56744 6788887766544432 4656666512 234444443333368899999998876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00036 Score=72.25 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=120.1
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE-EcCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw-d~~~~ 361 (567)
+....-....+.++|+|++++++ .||...||.....+.... +.....+|...+ .+|+-...++|.|+ +++.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-
Confidence 33344456789999999999985 488888888554444332 234567888844 57777778889996 4432
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.....+. ....+..|-. |..|+ ..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+.+ .+.|++
T Consensus 100 -~~~k~i~-~~~~~~~If~---G~LL~-~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 -EVVKSIK-LPFSVEKIFG---GNLLG-VKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --TT------SS-EEEEE----SSSEE-EEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -ccceEEc-CCcccceEEc---CcEEE-EEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 1112222 1223444433 55444 444 458999999999999999877 4899999998887777654 555554
Q ss_pred CCCC--------------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 441 AETQ--------------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 441 ~~~~--------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
.... ..+..+ ...|.+.+|..+ .++..+...|+. +..| ....+..-..++.-+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G----e~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY--LVNG----ETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE--EETT----EEEEEEE-SS--EEEEE
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE--EEcC----CcceEEEcCCceEEEEE
Confidence 3322 333332 467999999877 455445446666 3333 22233333556777788
Q ss_pred eCCCCeEEEEEcCCeEEEEECC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+..+.++....++.|..+.+.
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 8877788888888888887665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=79.85 Aligned_cols=226 Identities=13% Similarity=0.171 Sum_probs=132.2
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
.+.|.++.|..+..-|+.+..+|.|.+-|.++.. +.....-...|.+++|+||+..+. ..+.++++.+-+ .+-..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEe-ccccch
Confidence 3579999999999999999999999999887633 233344567899999999976544 555555555433 211111
Q ss_pred EEEeCCeeEEEEecCCCEEEEEECCCe----------EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEE-----e
Q 008393 409 RVFKGGTAQMRFQPHLGRYLAAAAENV----------VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-----S 473 (567)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~dg~----------I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-----s 473 (567)
....-. ..-.+ .+.++.++.... ....+....+.......-.+.-++|+|--||+++|+. .
T Consensus 144 ~E~~L~---~d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLD---ADDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hccccc---ccccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 110000 00000 011222222111 1111111000000000011223469999999999984 3
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc---CCeEEEEECCCCcEE----EeccccCCeeEE
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 545 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l 545 (567)
.. .|+|||-+ + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+..+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 32 79999976 3 111122223344567899999998888754 457999986543322 233444559999
Q ss_pred EEecCCCEEEE---EECCCcEEEc
Q 008393 546 AVSTETGYVAS---ASHDKFVKLW 566 (567)
Q Consensus 546 ~~spdg~~l~s---~s~Dg~I~iW 566 (567)
+|+.++..||+ ......|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4445559998
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00061 Score=69.99 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=150.5
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeE
Q 008393 291 ICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLR 366 (567)
Q Consensus 291 ~~l~~s~dg~~-lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~ 366 (567)
.+++++++++. +++...++.|.+.|..+.+....+.--. .-..++|+++++.++.+.. ++++.+.|..+ .....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEE
Confidence 46888898874 4555556999999988777766655322 5678999999988777765 67888888887 44444
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE------E-EeCCeeEEEEecCCCEEEEEECC---CeE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------V-FKGGTAQMRFQPHLGRYLAAAAE---NVV 436 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~------~-~~~~~~~~~~~~~~~~l~~~~~d---g~I 436 (567)
....-..+ ..+++.|++..++++-..++.|.+.|.......+ . .......+.+.+++.++++.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 43332233 8899999999888777789999999988776664 1 11234678899999988777664 599
Q ss_pred EEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 437 SILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
...|..++........-.. ....+.++|+|+++++.... .+.+.|..+......+............+++.+..
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 9999999877765221112 45678999999988887544 89999987653333333333333335555555543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7e-07 Score=91.17 Aligned_cols=197 Identities=15% Similarity=0.197 Sum_probs=129.7
Q ss_pred CCCeEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECC-CCCeEEEEe----CCCcEEEEE
Q 008393 287 TSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVWD 357 (567)
Q Consensus 287 ~~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp-~~~~l~s~s----~dg~I~iwd 357 (567)
+..+.|+++.-+. .++++|..+|.|.+-.+.... ......+|...+++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4556788776644 478899999999998776432 2345567888999999998 455666663 256799999
Q ss_pred cCCC----CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeC-CeeEEEEecCCCEEEEEE
Q 008393 358 ADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 358 ~~~~----~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~l~~~~ 431 (567)
+.+. ........+......+++|..+ ..++.+|.....+.++|++.. .....+.. .+..+.+.|-....++..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 9863 1111111223455668899866 456668888889999999832 22222222 344566777556677777
Q ss_pred CCCeEEEEEC-CCCe-EEEEecCCC----CCeeEEEEcCCCC-EEEEEeCC--eEEEEeCCC
Q 008393 432 AENVVSILDA-ETQA-CRLSLQGHT----KPIDSVCWDPSGE-LLASVSED--SVRVWTVGS 484 (567)
Q Consensus 432 ~dg~I~i~d~-~~~~-~~~~~~~h~----~~V~~l~~sp~g~-~l~s~s~d--~I~iwd~~~ 484 (567)
.|+.|.+||. ++-+ ++..+...+ ..+..++|.|... ++++...| +|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7999999994 3322 222222112 2489999999543 66777777 899999864
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=72.61 Aligned_cols=258 Identities=13% Similarity=0.097 Sum_probs=135.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC---C----
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P---- 361 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~---~---- 361 (567)
.|+++.|+++..-|++|...|.|.||.+...+... ......-..+.|.+- ...++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876433221 000001111111110 00111223334322 1
Q ss_pred -CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--C---------CeeEEEEe-----cCC
Q 008393 362 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQ-----PHL 424 (567)
Q Consensus 362 -~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~---------~~~~~~~~-----~~~ 424 (567)
-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-. . .++++.|. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 12334455568999999998554 88899999999999999887776521 1 23445554 222
Q ss_pred ---CEEEEEECCCeEEEEECC--C-Ce----EEEEecCCCCCeeEEE-EcCC---------------------CCEEEEE
Q 008393 425 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 472 (567)
Q Consensus 425 ---~~l~~~~~dg~I~i~d~~--~-~~----~~~~~~~h~~~V~~l~-~sp~---------------------g~~l~s~ 472 (567)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ ..+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358888899999999764 1 21 1222224567776665 3222 1266777
Q ss_pred eCCeEEEEeCCCCCCCceEEEeecCCCceEEEEE-----eCCCCeEEEEEcCCeEEEEECCCCcEE-Eecc----ccCCe
Q 008393 473 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 542 (567)
Q Consensus 473 s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~-----sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~----h~~~V 542 (567)
++..++++...+. +..+...........+.+ ...+..|++...+|.|++|.+..-+.+ .+.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 334333322223333444 235677888899999999999987766 2222 22345
Q ss_pred eEEEEecCCCEEEEEEC
Q 008393 543 AALAVSTETGYVASASH 559 (567)
Q Consensus 543 ~~l~~spdg~~l~s~s~ 559 (567)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 66778888887766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00062 Score=66.55 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=126.6
Q ss_pred EEEEcCCCCeEEEEe--CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 292 CCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 292 ~l~~s~dg~~lasg~--~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
.++++.||+++++.. -.-.|.|.|+...+.+.++.... +..+-=+. ...+.+.|.||.+.-..++..++......
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeec
Confidence 478999999888764 34679999999999988776433 22221122 24688999999999999997666543221
Q ss_pred ----cCCCcEE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EE-------------eCCeeEEEEecCCCEEEE
Q 008393 370 ----GHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF-------------KGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 370 ----~h~~~V~-~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~-------------~~~~~~~~~~~~~~~l~~ 429 (567)
....++. .-.+...+..+++ -+.+|.|+-.|+....... .+ .++-..+++++..+++++
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred cccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1122222 2334444444553 5678999998887765322 22 234456888888888776
Q ss_pred EECC----------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC-EEEEEeC-C-eEEEEeCCCCCCCceEEEee
Q 008393 430 AAAE----------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSE-D-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 430 ~~~d----------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~-d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.-.. ..|.+||+.+++.+.++.. ..++.+|.++.+.+ +|++.+. + .|.+||..++ +.+..+.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence 4321 2699999999999988874 24688999999877 6655544 4 8999999988 4555544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=62.07 Aligned_cols=196 Identities=17% Similarity=0.254 Sum_probs=110.2
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEEC-CCeEEEEEC
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDA 441 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~ 441 (567)
.+.+-...+..|+|.|+.+.|+++....+.|..++.. ++.++.+. +....+++..++ .++.... ++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEE
Confidence 4455566799999999989999999999999999974 77777764 346778887654 5555554 788988887
Q ss_pred CCC------eEEEEec-----CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC--CCCCceEEEe------ecCCCce
Q 008393 442 ETQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHEL------SCNGNKF 501 (567)
Q Consensus 442 ~~~------~~~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~--~~~~~~i~~~------~~~~~~i 501 (567)
... .....+. .+...+-.|+|++.++.|+.+-+. -..||.+.. ......+... ...-..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 331 1111221 244568999999987767666666 566666653 1111111111 1123447
Q ss_pred EEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEE---Eecc--c-----cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 502 HSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~---~~~~--h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+.++|....|++-+. ...|..+| .+|+.+ .+.. | -...-.|+|.++|++.++ ++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 88899998766666555 45888899 455544 2222 1 124678999999976655 455555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0053 Score=65.68 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=113.8
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEE---E-------EEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~---~-------i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|+-+|..+|+.+..+.... ..+. + +++ .+..|+.++.|+.|.-.|..+ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777778899999999999888765321 1111 1 122 234677888899999999988 444332
Q ss_pred ecc--CC--CcEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCCe----------------------
Q 008393 368 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 415 (567)
Q Consensus 368 ~~~--h~--~~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~~---------------------- 415 (567)
... +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 221 11 11211 1111 2 33443222 26899999999999886643210
Q ss_pred -------------eEEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecCCCCCee--------
Q 008393 416 -------------AQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGHTKPID-------- 458 (567)
Q Consensus 416 -------------~~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h~~~V~-------- 458 (567)
..+.+.+..+.++++..+ ..|.-.|+++++.+..+......+.
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 123566777777777632 2688889999999888765222211
Q ss_pred -EEEEcCCCC---EEEEEeCC-eEEEEeCCCCCC
Q 008393 459 -SVCWDPSGE---LLASVSED-SVRVWTVGSGSE 487 (567)
Q Consensus 459 -~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~ 487 (567)
-+.+..+|+ .++.+..+ .+++.|-++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122334666 77778888 999999988753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00013 Score=77.06 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3469999998899999999999999998888888888999999999999999999999999999999877
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-05 Score=78.75 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=65.0
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.....|.|++++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+|+|..|++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 56789999999999999999999999999998766333 33445668899999999999999999999999997533
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=61.31 Aligned_cols=149 Identities=14% Similarity=0.012 Sum_probs=109.7
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 455 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 455 (567)
+...++.+.+++.|+..+.+.-.|..+|+.+..- ...+.+-+.- -++.++.++..|.+++.+.+++.....+..-..
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3344555678888888999999999998876543 2223222222 467899999999999999999988877765433
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
--......+++.++++++.| +.+..|.++. .++...+..+..+.+-++.+-...|+++...|.|.--..+..
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 22344567899999999999 9999999765 788888888888888888885555777777676655555554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0039 Score=61.03 Aligned_cols=214 Identities=15% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE---------
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 409 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--------- 409 (567)
..++.|+.|+.+| |.++++.......... +...|..|...++-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3567899999999 9999994323333332 233499999998877666443 6999999987654333
Q ss_pred ------EEeC--CeeEEE--EecCCCEEEEEECCCeEEEEECCCC-----eEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 410 ------VFKG--GTAQMR--FQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 410 ------~~~~--~~~~~~--~~~~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+.. ++...+ -...+...++++....|.+|..... +....+. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 1111 222222 2245566677777778888877553 3444444 34778899998 567888877
Q ss_pred CeEEEEeCCCCCCCceEEEeecCC---------CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCee
Q 008393 475 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIA 543 (567)
Q Consensus 475 d~I~iwd~~~~~~~~~i~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~ 543 (567)
+...+.|+.++.. ..+....... .....+.--+++.+|++. +..-.+.|....... .+. -...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEE-cCCchh
Confidence 7888999986533 2222111111 111222222334444432 333344444332221 122 123455
Q ss_pred EEEEecCCCEEEEEECCCcEEEcC
Q 008393 544 ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 544 ~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++. ..||+..+.+ .|.||+
T Consensus 233 ~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEE--CCEEEEECCC-EEEEEE
Confidence 66663 4577766654 477764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0056 Score=60.37 Aligned_cols=216 Identities=11% Similarity=0.109 Sum_probs=128.6
Q ss_pred EEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-
Q 008393 335 VRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 412 (567)
Q Consensus 335 i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~- 412 (567)
..|.++...| .+--..+.|.-|+..+... ..+. +...+.++.....+..|+ ++ +..+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3566666644 4444577788888876333 2232 334445555544444444 54 4457777776665533322
Q ss_pred -------CCeeEEEEecCCCEEEEEEC-----------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 413 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 413 -------~~~~~~~~~~~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
...+...+.|++...+..-. -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345677787655554333 134666665 45555566655566688999999988887776
Q ss_pred C--eEEEEeCCC--CCCC--ceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECCCCcEE-EeccccCCeeEEE
Q 008393 475 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 546 (567)
Q Consensus 475 d--~I~iwd~~~--~~~~--~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 546 (567)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 5 777777752 2111 11222223345566778888898665555554 99999998 6665 4444447888899
Q ss_pred Ee-cCCCEEEEEE
Q 008393 547 VS-TETGYVASAS 558 (567)
Q Consensus 547 ~s-pdg~~l~s~s 558 (567)
|- ++.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 84 4455544433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.018 Score=56.30 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=123.4
Q ss_pred CCCCeEEEEeCCCcEEEEeCC-CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE--------
Q 008393 297 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 367 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------- 367 (567)
..++.|+.|+.+| |.+++.. ..+...... ...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999888 8999983 333333332 22399999999877777665 499999998752221100
Q ss_pred -----eccCCCcEEEEE--EcCCCCeEEEEEeCCCcEEEEECCCC-----eeeEEEe--CCeeEEEEecCCCEEEEEECC
Q 008393 368 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 368 -----~~~h~~~V~~l~--~~p~~~~li~s~~~dg~I~iwd~~~~-----~~~~~~~--~~~~~~~~~~~~~~l~~~~~d 433 (567)
.......+...+ -...+...++. .....|.+|.+... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111233444444 12233334433 33558888887653 3334443 455667776 55666665 5
Q ss_pred CeEEEEECCCCeEEEEecCC------------CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCce
Q 008393 434 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h------------~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
+...++|+.++.....+... ..++..+.+ +++.+|++ .++.-.+.|.. |.... -..+.-. ...
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~-G~~~r-~~~i~W~-~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKN-GEPSR-KSTIQWS-SAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCC-CCcCc-ccEEEcC-Cch
Confidence 55888899877554433211 123333333 34566654 33333333432 32212 1122212 233
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..+++ ...||++.+. +.|.||++.+++.+
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 44455 3456776665 56999999999876
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.019 Score=59.54 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=102.2
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC-----ceeEEeccCCCcEEEEEEcCCC
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
.|.||+. .|+.+.++.-..+.|.++.|+.+. .|++...||.+++||+.... ..+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4889976 466677666555899999998854 66677789999999996422 0011111111222222333333
Q ss_pred CeEEEEEeCCCcEEEEECCCCe-eeEEE---eCCee----------EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 008393 385 DDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~-~~~~~---~~~~~----------~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
+++ -..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 332 2334445444322221 11111 11000 012334444444455555555444332211 1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP 511 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~ 511 (567)
. ..+++..|++||+|++||.-..+ .+.+....-. +.+.++... ......+.|.-++.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 1 23689999999999999999887 8877765332 344444443 34456667766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0019 Score=64.81 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCceeEEecc-CCCcEEEEE---EcCC---CCeEEEEEeC----------CCcEEEEECCCC-----eee-
Q 008393 352 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCT- 408 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~-h~~~V~~l~---~~p~---~~~li~s~~~----------dg~I~iwd~~~~-----~~~- 408 (567)
.|++.|..+ ...+..+.- ....+.+++ +..+ ...+++.|.. .|.|.++++... +..
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777766 334333321 233444444 3322 1456655543 288999999984 222
Q ss_pred ---EEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe-EEEEec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 409 ---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 409 ---~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|+.|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2234556666544 566 555556899999988776 433222 122356666554 5688888766 7776654
Q ss_pred CCCCCCceEEEee--cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC-------Cc-EE---EeccccCCeeEE---E
Q 008393 483 GSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------NK-TM---TLTAHEGLIAAL---A 546 (567)
Q Consensus 483 ~~~~~~~~i~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~-------~~-~~---~~~~h~~~V~~l---~ 546 (567)
.... ..+..+. .....++++.|-.+++.++++..+|.|.++.... +. .+ ........|+++ .
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4311 2222222 2345578888886667899999999999988763 22 22 222334567777 4
Q ss_pred Eec--CCC------EEEEEECCCcEEE
Q 008393 547 VST--ETG------YVASASHDKFVKL 565 (567)
Q Consensus 547 ~sp--dg~------~l~s~s~Dg~I~i 565 (567)
+.| .+. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 445 222 3778889998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.013 Score=58.88 Aligned_cols=212 Identities=12% Similarity=0.144 Sum_probs=123.4
Q ss_pred CcEEEEeCCCCeeeeeecc-cCccEE---EEEECCC----CCeEEEEeC----------CCcEEEEEcCCC---CceeE-
Q 008393 309 KKAVLWHTDTLKSKTNLEE-HSSLIT---DVRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR- 366 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~-h~~~V~---~i~fsp~----~~~l~s~s~----------dg~I~iwd~~~~---~~~~~- 366 (567)
..|++.|..+.+.+.++.- ....+. .+.|..+ ..+|++|.. .|.|.++++... ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888877766542 222344 3444433 457777743 288999999873 11222
Q ss_pred -EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEE--EeCCeeEEEEecCCCEEEEEECCCeEEEE--E
Q 008393 367 -TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--D 440 (567)
Q Consensus 367 -~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~I~i~--d 440 (567)
.-....++|++|+-. +++++++. .+.|.+|++...+ .... +......+.....+++++++.....|.++ +
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 223457889999877 34455443 5899999998887 4433 33444555666667899999988877766 4
Q ss_pred CCCCeEEEEe-cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC-----C---CCceEEEeecCCCceEEE---EEe
Q 008393 441 AETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFH 507 (567)
Q Consensus 441 ~~~~~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~-----~---~~~~i~~~~~~~~~i~~~---~~s 507 (567)
....+....- ......+++++|-.+++.++++..+ .|.++..... . ....+..+. .+..++++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 4333222222 2234568889998666778878877 8888887631 1 112223333 24556666 444
Q ss_pred C--CCC------eEEEEEcCCeEEEE
Q 008393 508 P--TYP------SLLVIGCYQSLELW 525 (567)
Q Consensus 508 p--~~~------~l~~~~~dg~I~iw 525 (567)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 222 48888899988733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.11 Score=57.58 Aligned_cols=237 Identities=9% Similarity=0.017 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCeEEEEeC-----CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC------CcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d------g~I~iwd 357 (567)
.+..+.++|||++|+.+.. ...|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4557889999999887643 23688999988864332221221 458999998876665432 3588888
Q ss_pred cCCCC-ceeEEeccCCCcEE-EEEEcCCCCeEEEEEeC--CCcEEEEECC--CCeeeEEEeC-CeeEEEEecCCCEEEEE
Q 008393 358 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 358 ~~~~~-~~~~~~~~h~~~V~-~l~~~p~~~~li~s~~~--dg~I~iwd~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 430 (567)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 88742 22233333333333 33334477766654433 4678998853 3332222221 11112222333555554
Q ss_pred ECC----CeEEEEECCC-CeEEEEecCC-C-CCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEee-cCCC
Q 008393 431 AAE----NVVSILDAET-QACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGN 499 (567)
Q Consensus 431 ~~d----g~I~i~d~~~-~~~~~~~~~h-~-~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~-~~~~ 499 (567)
+.. ..|...++.. ++. ..+..+ . ..|..+.+.. +.++++...+ .+.+++...+ .+..+. ....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~ 359 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA 359 (686)
T ss_pred EcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence 442 2455555552 222 233334 3 3677788873 3455555544 4566665422 223332 1122
Q ss_pred ceEEEEEe--CCCCeE-EEEEcC---CeEEEEECCCCcEE
Q 008393 500 KFHSCVFH--PTYPSL-LVIGCY---QSLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~s--p~~~~l-~~~~~d---g~I~iwd~~~~~~~ 533 (567)
.+..+.++ +++..+ +..++. +.++.||+.+++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 23333344 444433 333332 58999999877643
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.016 Score=60.10 Aligned_cols=187 Identities=7% Similarity=0.096 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEE-E---Eec
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQM-R---FQP 422 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~-~---~~~ 422 (567)
.|.||+... ..+..+.-..+.|.++.|..+ ..|+ .-..||.+++||+.... ...+.. .+... . +..
T Consensus 62 ~I~iys~sG--~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSG--KLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCC--CEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 377887763 344443333388999999876 4565 45679999999987433 111111 11111 1 112
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-EEEEec---CCCC------Cee-EEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 423 HLGRYLAAAAENVVSILDAETQA-CRLSLQ---GHTK------PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~---~h~~------~V~-~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
..+ +++-..++.+.+.+-.... ....+. .... .+. ...++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 223 4444555555555433322 111111 1000 000 02234444444444444 5554433211
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-cccCCeeEEEEecCC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAALAVSTET 551 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spdg 551 (567)
..+. ..+++..+++||++++|+....+|.+.+....-.+.+ .+. .-......+.|.-+.
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 0111 2468999999999999999999999999876655544 222 223456677776544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0097 Score=59.45 Aligned_cols=240 Identities=13% Similarity=0.129 Sum_probs=118.1
Q ss_pred eCCCCeeeeeecccCccEEEE-----EECCCCCeEEEEeC-CCc--EEEEEcCCCCceeEEeccCC-CcEEEEEEcCCCC
Q 008393 315 HTDTLKSKTNLEEHSSLITDV-----RFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 385 (567)
Q Consensus 315 d~~~~~~~~~l~~h~~~V~~i-----~fsp~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~ 385 (567)
|..||..+..|..+......+ +|.++|+.|+.++. ||. +.+.|+.+ + .+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t-~-~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT-G-EITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc-C-EEEECccCCCCCccceEEecCCC
Confidence 556777777776544433333 56778876655554 554 56667765 3 344444433 2222466678877
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeC--Cee-EEEEe-cCCCEEEEEEC-----------------------CCeEEE
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 438 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~-~~~~~-~~~~~l~~~~~-----------------------dg~I~i 438 (567)
.+++.. ....|+..|+.+.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 766543 456899999999876555443 222 23343 22233344332 135677
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC---e--EEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCC
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED---S--VRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d---~--I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
.|+.+++....+. ....+..+-|+| |..+|+.|-++ . -|||-+++.. ....+..- .....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 7888887665555 456788899999 45577777655 3 3788776532 22233222 1233444557999998
Q ss_pred eEEEEEc-----CCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 512 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 512 ~l~~~~~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.|..-+. +..|.-+|+.+++...+.. ......+..++||+++|-=|.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE-E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe-CCceeeeEEcCCCCEEEecCCC
Confidence 7766433 3367788888886553322 2234456668899887754444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.024 Score=59.13 Aligned_cols=218 Identities=13% Similarity=0.109 Sum_probs=121.8
Q ss_pred EEEEEECCCCCeEEEE-eCCC----cEEEEEcCCCCceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCC----------C
Q 008393 332 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 395 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~-s~dg----~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~d----------g 395 (567)
+..+.++|++++||.+ +..| .|+++|+++ +..+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999988766 3344 499999998 44333 22221 122399999988888776443 2
Q ss_pred cEEEEECCCCeee--EEEeC--C---eeEEEEecCCCEEEEEEC---C-CeEEEEECCCC-----eEEEEecCCCCCeeE
Q 008393 396 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 459 (567)
Q Consensus 396 ~I~iwd~~~~~~~--~~~~~--~---~~~~~~~~~~~~l~~~~~---d-g~I~i~d~~~~-----~~~~~~~~h~~~V~~ 459 (567)
.|+.|.+.+.... ..+.. . ...+..+.++..+++... + ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888876432 34432 2 346778899888776554 3 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECC-CCc
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 531 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~-~~~ 531 (567)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444433 466667765543223335555555433344455555666655443 79999999 554
Q ss_pred EEEecc-ccCCeeEEEEecCCCE
Q 008393 532 TMTLTA-HEGLIAALAVSTETGY 553 (567)
Q Consensus 532 ~~~~~~-h~~~V~~l~~spdg~~ 553 (567)
...+.. -.+.|..+...+++..
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SE
T ss_pred EeeecCCcceEEeccCCCCCCCE
Confidence 443332 2334555554455543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0042 Score=63.61 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=119.7
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee--cc------cCccEEEEEECC-----CC--
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM-- 341 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l--~~------h~~~V~~i~fsp-----~~-- 341 (567)
|.....++...++|++++.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 66777788889999999998655 9999999999999999877777652 22 345688888852 33
Q ss_pred -CeEEEEeCCCcEEEEEcCC--CC-ce---eEEeccCCCcEEEEE-EcCC--------------------CCeEEEEEeC
Q 008393 342 -PRLATSSFDKTVRVWDADN--PG-YS---LRTFMGHSASVMSLD-FHPN--------------------KDDLICSCDG 393 (567)
Q Consensus 342 -~~l~s~s~dg~I~iwd~~~--~~-~~---~~~~~~h~~~V~~l~-~~p~--------------------~~~li~s~~~ 393 (567)
-+|++|...|.+.+|.+.- .+ .. ......+.+.|..|. |..+ -+.+++.++
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS- 233 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS- 233 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-
Confidence 3789999999999998751 11 11 112224667777666 3222 022443444
Q ss_pred CCcEEEEECCCCeeeEEEeCC-ee--EEEEe-----cCCCEEEEEECCCeEEEEECCCCeEEEEecCCC----CCeeEEE
Q 008393 394 DGEIRYWSINNGSCTRVFKGG-TA--QMRFQ-----PHLGRYLAAAAENVVSILDAETQACRLSLQGHT----KPIDSVC 461 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~-~~--~~~~~-----~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----~~V~~l~ 461 (567)
+..|+++...+.+........ .. .+.+- ..+..|++...+|.|++|.+-..+.+..+.-.. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 788999999987766543332 22 22332 245567778889999999999988887776532 2345677
Q ss_pred EcCCCCEEEEEeCCeEEEEeC
Q 008393 462 WDPSGELLASVSEDSVRVWTV 482 (567)
Q Consensus 462 ~sp~g~~l~s~s~d~I~iwd~ 482 (567)
++++|..++-.+...+.++.+
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEE
T ss_pred ECCCCCEEEEeCcccEEEEEE
Confidence 899999888887765444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.061 Score=57.65 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=85.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeeccc--C--ccEEE-EEECCCCCeEEEEe------CCCcEEEEEcCCCCceeEEe
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~--~~V~~-i~fsp~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~ 368 (567)
..++.++.|+.|..+|.++|+.+...... . ..+++ .... ++ .|+++. .+|.|..+|.+++....+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 46677888999999999999998776531 1 11111 1111 33 455543 26889999988743322211
Q ss_pred ccC------------------------------CCcEE-EEEEcCCCCeEEEEEe-C----CC-----------cEEEEE
Q 008393 369 MGH------------------------------SASVM-SLDFHPNKDDLICSCD-G----DG-----------EIRYWS 401 (567)
Q Consensus 369 ~~h------------------------------~~~V~-~l~~~p~~~~li~s~~-~----dg-----------~I~iwd 401 (567)
... ...+. .+.+.+..+.++ .+. . ++ .|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy-~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIY-FGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEE-EeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 110 01111 346666544343 333 1 12 678889
Q ss_pred CCCCeeeEEEeCC----------eeEE--EEecCCC---EEEEEECCCeEEEEECCCCeEE
Q 008393 402 INNGSCTRVFKGG----------TAQM--RFQPHLG---RYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 402 ~~~~~~~~~~~~~----------~~~~--~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
+++++....|... ...+ .+..++. .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988776531 1112 2324554 4557777999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=74.07 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=79.4
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEE-EEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~-~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
..-...|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++.
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3345677889999999999999999999999987 788888887887787 99999999999999999999999999855
Q ss_pred ceeEEeccCCCcEEEEEEc
Q 008393 363 YSLRTFMGHSASVMSLDFH 381 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~ 381 (567)
........-...|.++-|.
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 4333223344567777775
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.4e-05 Score=81.97 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=130.2
Q ss_pred ccEEEEEECCCC--CeEEEEeCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEe----CCCcEEEEEC
Q 008393 330 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 402 (567)
Q Consensus 330 ~~V~~i~fsp~~--~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~----~dg~I~iwd~ 402 (567)
..+.|+++.-+. ..++.|..+|.|.+-.+...... .....++....++++|.+-...+++.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346666665433 47888999999999988764433 4556678889999999987666675553 3668999999
Q ss_pred CCCe--ee--EEE----eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEe
Q 008393 403 NNGS--CT--RVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVS 473 (567)
Q Consensus 403 ~~~~--~~--~~~----~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s 473 (567)
.++- .. ..| ..+...++|..+...+++|.....+.++|++........ -.+..+..+.++| .++|+++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhhhhcccceecCCCCCceeccc
Confidence 9872 11 112 124567888877778888888899999999843211111 1234567788888 888998888
Q ss_pred CCeEEEEeC-CCCCCCceEEEeecCC----CceEEEEEeCCCCe-EEEEEcC-CeEEEEECCC
Q 008393 474 EDSVRVWTV-GSGSEGECVHELSCNG----NKFHSCVFHPTYPS-LLVIGCY-QSLELWNMSE 529 (567)
Q Consensus 474 ~d~I~iwd~-~~~~~~~~i~~~~~~~----~~i~~~~~sp~~~~-l~~~~~d-g~I~iwd~~~ 529 (567)
++.|.+||. +.-+ ..+..+.... ..+..++|.|...- +++...| ++|++||+..
T Consensus 216 dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 779999993 3221 1111111122 24788899996543 4444444 5899998853
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0083 Score=64.78 Aligned_cols=207 Identities=16% Similarity=0.192 Sum_probs=114.0
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe------CCC--cEEEEEcCCCCceeEEeccCCCcEEEEE
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDK--TVRVWDADNPGYSLRTFMGHSASVMSLD 379 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 379 (567)
+|.+.-.+-.....+.-..+....+...+++|+|+.++..- .|. .|.+++.. +.......+. ....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443222222222223334688999999999887665 244 45555543 3222223332 377889
Q ss_pred EcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE---EECCCCe
Q 008393 380 FHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQA 445 (567)
Q Consensus 380 ~~p~~~~li~s~~-----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i---~d~~~~~ 445 (567)
|+|+|..+.+... ..+.+.+.++..+.....+.+.+..+.|+|++.+++... ++.|++ .....++
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999776554432 223455556655554445567899999999999988877 467777 4444554
Q ss_pred EEE----Eec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec--CCCceEEEEEeCCCCeEEEEE
Q 008393 446 CRL----SLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 446 ~~~----~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~--~~~~i~~~~~sp~~~~l~~~~ 517 (567)
... .+. +-...+.++.|..++.+++ +..+ ...+|.+.-....... +.. ....+..++-++. .|++..
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V-~~~~~~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVV-GRSDPEHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEE-EecCCCCceEEEecCCccccc--cCCCCccCceEEEecCCc--eEEEEc
Confidence 111 122 2233468899999998664 4444 3334444322111111 111 1344555555552 466666
Q ss_pred cCCeEEE
Q 008393 518 CYQSLEL 524 (567)
Q Consensus 518 ~dg~I~i 524 (567)
.++.+.+
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 6664444
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=54.94 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=140.7
Q ss_pred EEEEcCCC-CeEEEEeCCCc-EEEEeCCCCeeeeeecccCc--cEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCC
Q 008393 292 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG 362 (567)
Q Consensus 292 ~l~~s~dg-~~lasg~~dg~-I~vwd~~~~~~~~~l~~h~~--~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~ 362 (567)
.|+|+|.. .-++.+-.-|+ ..++|........++...++ .--.=.|++||.+|+..-.| |.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 57777754 34455544443 56788877766655432111 11123799999999876443 789999999766
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE-ECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW-SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
..+-.+..|.-....+.|.+||..+++. +|-|... |... ..+-.-+..-.+.+.|.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvva---nGGIethpdfgR--------------------~~lNldsMePSlvlld~ 208 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVA---NGGIETHPDFGR--------------------TELNLDSMEPSLVLLDA 208 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEe---CCceecccccCc--------------------cccchhhcCccEEEEec
Confidence 6677788888888899999999866644 4445544 2211 01112233445556666
Q ss_pred CCCeEEEEe--c--CCCCCeeEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCCCCceEE----EeecCCCceEEEEEe
Q 008393 442 ETQACRLSL--Q--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVH----ELSCNGNKFHSCVFH 507 (567)
Q Consensus 442 ~~~~~~~~~--~--~h~~~V~~l~~sp~g~~l~s~s~-----d-~I~iwd~~~~~~~~~i~----~~~~~~~~i~~~~~s 507 (567)
.++..+.+. . .+.-.|..++..+||..++.+-. | --.+=-...++..+.+. ....-...|-+++.+
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 666554332 2 24456888899999887765532 1 11111111121111110 001113446677888
Q ss_pred CCCCeEEEEEcCC-eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 508 PTYPSLLVIGCYQ-SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 508 p~~~~l~~~~~dg-~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+..+++..+-.| ...+||..++..+....-.. +..++- ...-++..+.+|.+.+
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~--~~~gf~vssg~G~~~~ 344 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAA--AKGGFAVSSGQGRIIF 344 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-ccccee--ccCceEEecCCceEEe
Confidence 7777777766655 77899999999885443222 222222 2222444444566654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.009 Score=65.57 Aligned_cols=132 Identities=9% Similarity=0.109 Sum_probs=93.0
Q ss_pred eCCCcEEEEEcCCCCceeEEeccCCCc-EEEEEEcC-----CCCeEEEEEeCCCcEEEEECCCCe--eeE----EEe--C
Q 008393 348 SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR----VFK--G 413 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~~p-----~~~~li~s~~~dg~I~iwd~~~~~--~~~----~~~--~ 413 (567)
.....|+-.|++. ++.+..+..|... |..++-.. .....+ .|-.++.+..||.+-.. ++. .+. .
T Consensus 501 ~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3457799999998 7888888877654 55544321 112233 67789999999998643 221 111 1
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTV 482 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~ 482 (567)
...+++ ....+++++|+.+|.|++||--..+....+.+-..+|..|+.+.||+||++.+...|.+++.
T Consensus 579 ~Fs~~a-Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFA-TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CceEEE-ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 233443 34458999999999999999544444445666778999999999999999988888888876
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.017 Score=62.34 Aligned_cols=206 Identities=12% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe-----CC--CcEEEEECCCCeeeEEEeC-CeeEEEEe
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-----GD--GEIRYWSINNGSCTRVFKG-GTAQMRFQ 421 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-----~d--g~I~iwd~~~~~~~~~~~~-~~~~~~~~ 421 (567)
+|.+.-.+-.. ...+.-..+....+.+.+++|+|..++++.. .| ..|.+++... .......+ ....-.|+
T Consensus 328 ~G~l~~~~~~~-~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQG-VTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCC-eeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCCCCCCceEC
Confidence 66555443222 1222222233346788999999998887762 23 3566666533 22222222 35667899
Q ss_pred cCCCEEEEEECC------------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEE---EeCCCCC
Q 008393 422 PHLGRYLAAAAE------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGS 486 (567)
Q Consensus 422 ~~~~~l~~~~~d------------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~i---wd~~~~~ 486 (567)
|+++.+.+.... +.+.+.+++.++... .....|..+.|+|||..|+....+.|++ -....+.
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc
Confidence 998877666432 234444444443322 2346799999999999998887666666 3322331
Q ss_pred CCce--EEEeec-CCCceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcEEEecc--ccCCeeEEEEecCCCEEEEEEC
Q 008393 487 EGEC--VHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 487 ~~~~--i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~ 559 (567)
... ...+.. ....+..+.|..++.. +++..++ .++..++.......+.. ....+.+|+-++. .|+....
T Consensus 483 -~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 483 -YALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred -eeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcC
Confidence 111 122222 2333578899999984 4555544 35555555433222222 3566777777663 3445555
Q ss_pred CCcEE
Q 008393 560 DKFVK 564 (567)
Q Consensus 560 Dg~I~ 564 (567)
+|.+.
T Consensus 559 ~g~~~ 563 (591)
T PRK13616 559 RAVLQ 563 (591)
T ss_pred CceEE
Confidence 66443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.024 Score=55.93 Aligned_cols=183 Identities=16% Similarity=0.062 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-----cCccEEEEEECCCCCeEEEEeC---------CCcEEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRV 355 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-----h~~~V~~i~fsp~~~~l~s~s~---------dg~I~i 355 (567)
+.++..-.++..|+++ +.-+.+++.+++..+..+.. .....+.+...|+|.+.++... ...-.|
T Consensus 68 ~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 3444444444455555 34566677666655333321 1234567888899877665444 111245
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC--C----eeeEEE----eCCeeEEEEecCCC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRVF----KGGTAQMRFQPHLG 425 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~--~----~~~~~~----~~~~~~~~~~~~~~ 425 (567)
|-++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +....+ .+..-.++...++.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5555335556666666666788999999998887777778999998863 1 111111 13344567777777
Q ss_pred EEEEEECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC
Q 008393 426 RYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED 475 (567)
Q Consensus 426 ~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d 475 (567)
..+++...| .|.+|+.. ++.+..+......+++++|-- +.+.|+..+..
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 765555554 99999999 888888887767788888853 44555544433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.09 Score=49.96 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=117.8
Q ss_pred cEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 331 LITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
..-.+.|..++.++-+.+.-| .|+.+|+.++.......-.....-..|+... +.++.-.-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345677767777777777665 6899999984332222222333444566653 456666678999999999999988
Q ss_pred EEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC-----CCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 409 RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..+.-....--+..++..++.......|+++|..+.+....+.-. -..++.+.|- +|.+.|-.-.. .|...|.
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC
Confidence 887654333333367788999989999999999988776665432 2346667775 67766666555 8999999
Q ss_pred CCCCCCceEEEee---------------cCCCceEEEEEeCCCCeEEEEEcC
Q 008393 483 GSGSEGECVHELS---------------CNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 483 ~~~~~~~~i~~~~---------------~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
.+| ..+..+. ....-.+.+++.|....|++.|..
T Consensus 203 ~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 203 ETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 887 4443332 113458899999998888887764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.043 Score=50.28 Aligned_cols=203 Identities=10% Similarity=0.098 Sum_probs=109.7
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcC-CCC-eEEEEEeCCCcEEEEECCC--CeeeEEEe------
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKD-DLICSCDGDGEIRYWSINN--GSCTRVFK------ 412 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~-~li~s~~~dg~I~iwd~~~--~~~~~~~~------ 412 (567)
++.+--..|.|.-||+.........+.+.. +.++.+-- ++. .+.+.++..-.|.-||... ....+++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444566787899886333333333322 22333321 222 3444555444556677432 22223211
Q ss_pred --CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC--------CCeeEEEEcCCCCEEEEE-eCC-eEEEE
Q 008393 413 --GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLASV-SED-SVRVW 480 (567)
Q Consensus 413 --~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--------~~V~~l~~sp~g~~l~s~-s~d-~I~iw 480 (567)
...+.-..+|++.+ +.+.....=..+....++...-+.+|. .--+.++|+.+.+.++.. +.+ .|.-|
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 12233456777655 555542211122222333333333332 223568899887766655 455 78778
Q ss_pred e--CCCCC--CCceEEEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe
Q 008393 481 T--VGSGS--EGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 481 d--~~~~~--~~~~i~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 548 (567)
| ..++. ..+.+..+... .-..-.+++..+|+..++.-..++|..+|..+++.+ ++.-....|++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8 55553 23344444321 111234456778887777777889999999999988 566667889999995
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.2 Score=55.68 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=103.4
Q ss_pred ccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 008393 330 SLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 399 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~i 399 (567)
-.+..+.|+|++++|+.+... ..|++.|+.++......+.+ . -..++|.++++.++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778899999988776432 35888899873322222222 1 14699999998888776533 46888
Q ss_pred EECCCC--eeeEEEeC--C-eeEEEE-ecCCCEEEEEEC---CCeEEEEECC--CCeEEEEecCCCCCeeEEEEcCCCCE
Q 008393 400 WSINNG--SCTRVFKG--G-TAQMRF-QPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 468 (567)
Q Consensus 400 wd~~~~--~~~~~~~~--~-~~~~~~-~~~~~~l~~~~~---dg~I~i~d~~--~~~~~~~~~~h~~~V~~l~~sp~g~~ 468 (567)
+++.++ +....+.. . .....+ +.++..+++.+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899888 43444443 2 221223 336666665544 4578888843 3332222222222222222 223333
Q ss_pred EEEEeCC--eEEEE--eCCCCCCCceEEEeecC--CCceEEEEEeCCCCeEEEE-EcCC--eEEEEECCCCcEEEe
Q 008393 469 LASVSED--SVRVW--TVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVI-GCYQ--SLELWNMSENKTMTL 535 (567)
Q Consensus 469 l~s~s~d--~I~iw--d~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~~l~~~-~~dg--~I~iwd~~~~~~~~~ 535 (567)
++....+ ..+|+ ++... .....+..+ ...+..+.+. +++|++. ..++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333322 34444 44321 112233333 2357777776 3345444 4455 566667655444433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.057 Score=55.28 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=58.5
Q ss_pred EEEEcCCCCeEEEEeCCCcEEE---EeCC-----CCeeeeeec----cc-CccEEEEEECC-----------CCCeEEEE
Q 008393 292 CCHFSSDGKLLATGGHDKKAVL---WHTD-----TLKSKTNLE----EH-SSLITDVRFSP-----------SMPRLATS 347 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~v---wd~~-----~~~~~~~l~----~h-~~~V~~i~fsp-----------~~~~l~s~ 347 (567)
+++.+|++++||.+..+..+.+ |+.. ......... .. .+.|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999987776665 5431 111222211 11 15677777643 45689999
Q ss_pred eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEc
Q 008393 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~ 381 (567)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999985 44444444577788877764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0029 Score=69.24 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=88.2
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcC------CCCEEEEEeCCeEEEEeCCCCCCCceEE-Ee--ecCCCceE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVH-EL--SCNGNKFH 502 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp------~g~~l~s~s~d~I~iwd~~~~~~~~~i~-~~--~~~~~~i~ 502 (567)
.+.|+-.|++.|+.+..+..|... |..++-.. ....++..+.+.|..||.+-.. .+++. .. -.....+.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCce
Confidence 578999999999999999987654 55554221 1234444444499999998643 22331 11 12355677
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
|++-+.+| +|++|+.+|.|++||--..... .+.+...+|..|..+.||++|+..+..
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 77777777 4999999999999995332222 566778999999999999998766644
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.007 Score=61.51 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=93.3
Q ss_pred ecCCCEEEEE-ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC--------EEEEEeCCeEEEEeCCCCCCCceE
Q 008393 421 QPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECV 491 (567)
Q Consensus 421 ~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~--------~l~s~s~d~I~iwd~~~~~~~~~i 491 (567)
..+.+.++.. .....++-.|++.|+.+..++-+.. |.-+.+.|+.+ .|+.-+...|.-||.+-.... .+
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl 419 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL 419 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee
Confidence 3344444443 3357899999999999999887766 77777877654 344333448999999853321 22
Q ss_pred EEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE-EEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 492 HELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 492 ~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.....+ ...+.|++-..+| +|++|+.+|.|++||--.... ..+.+...+|..+..+.+|++|+..+..
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 222222 3345555555555 699999999999999732222 2677888999999999999998766543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.068 Score=55.52 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=82.2
Q ss_pred CCCeEEEEEcCCC----CeEEEEeCCCcEEEEeCC-----CCeeeeeec-ccCc--c--EEEEEECCCCCeEEEEeCCCc
Q 008393 287 TSKVICCHFSSDG----KLLATGGHDKKAVLWHTD-----TLKSKTNLE-EHSS--L--ITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 287 ~~~V~~l~~s~dg----~~lasg~~dg~I~vwd~~-----~~~~~~~l~-~h~~--~--V~~i~fsp~~~~l~s~s~dg~ 352 (567)
-..|..+.|.|-+ -.|+.....+.|.||.+. ..+....-. .... + -..+.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3568889999853 245555678899999875 223222211 1111 1 235689999998888877766
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
-.++++......++.-....+.|.|.+|..||.+|+++.+..=.-+|||-...
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 66777776555444444567889999999999999988887778899986554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00043 Score=43.87 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEe
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd 315 (567)
+....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.02 Score=61.88 Aligned_cols=214 Identities=9% Similarity=0.071 Sum_probs=107.4
Q ss_pred cEEEEeCCCCeeee--eecccCccEEEEEECCCCCeEEEEeCC------CcEEEEEcCCCCceeEEecc---CCCcEEEE
Q 008393 310 KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG---HSASVMSL 378 (567)
Q Consensus 310 ~I~vwd~~~~~~~~--~l~~h~~~V~~i~fsp~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~---h~~~V~~l 378 (567)
.+..||..+.+... .+...... .+++. -++..++.|+.+ ..+..||..+... ..+.. ..... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence 56778887655332 22211111 12222 256677777754 3477888876332 22211 11111 22
Q ss_pred EEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEE--EeCCeeEEE-EecCCCEEEEEECC-----------------
Q 008393 379 DFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQMR-FQPHLGRYLAAAAE----------------- 433 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~~l~~~~~d----------------- 433 (567)
+.. ++.+++.||.++ .+..||..+.+.... +........ ..-++..+++|+.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 222 346777787654 488899887754432 111111111 12234444445443
Q ss_pred ------CeEEEEECCCCeEEEEecCCCCCee-EEEEcCCCCEEEEEeCC-------eEEEEeCCCCCCCceEEEeecCCC
Q 008393 434 ------NVVSILDAETQACRLSLQGHTKPID-SVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 434 ------g~I~i~d~~~~~~~~~~~~h~~~V~-~l~~sp~g~~l~s~s~d-------~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
..+..||.++.+-...-.-...... +++ .-+|++.+.|+.+ .|..||..+......+..+.....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 3577899877643221111111111 222 2346666666532 367888876223344444443333
Q ss_pred ceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~ 533 (567)
....+++ +++..++||.++ .+..||..+.+..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 2222222 677777888787 7889999888765
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00067 Score=42.95 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.4
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.038 Score=50.64 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=101.6
Q ss_pred eEEEEeCCCcEEEEeC--CCCeeeeeecc-----cCccEEEEEECCCCCeEEEEeC---------CCcEEEEEcCCCCce
Q 008393 301 LLATGGHDKKAVLWHT--DTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRVWDADNPGYS 364 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~--~~~~~~~~l~~-----h~~~V~~i~fsp~~~~l~s~s~---------dg~I~iwd~~~~~~~ 364 (567)
+.+.++..-.|.-||. +..+...++.. .....++-..+|+|++++-.-. .|.++.|-... .
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~ 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---Q 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---C
Confidence 4444444445556773 33334444221 2344566677899988443222 24455555542 1
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE--CCCCee-----eEEEeC-------CeeEEEEecCCCEEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd--~~~~~~-----~~~~~~-------~~~~~~~~~~~~~l~~~ 430 (567)
+..+...-+--..|+|+.+.+.+.++-+.+-+|.-|| ..+|.. +..++. ....+++...++.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2222223334457889988888888888888998888 555532 222221 12335566677778888
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 464 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp 464 (567)
...++|..+|..+++.+..++-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8889999999999999999998899999999964
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=47.49 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=66.8
Q ss_pred eEEEEEcC---CC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 290 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 290 V~~l~~s~---dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
|+++++.. || +.|++|+.|..|++|+-+ +.+..+... +.|++++-... ..++.+-.+|+|-+|+-... ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcce--ee
Confidence 55666544 44 589999999999999854 566666644 45777776655 57999999999999987542 22
Q ss_pred EEeccCCCcEEEEEEc---CCCCeEEEEEeCCCcEE
Q 008393 366 RTFMGHSASVMSLDFH---PNKDDLICSCDGDGEIR 398 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~---p~~~~li~s~~~dg~I~ 398 (567)
+.-. ...+.++++. .+|..-+++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 2336666553 33444455787788764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.15 Score=48.65 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=122.3
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc-CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+.+-+..|.++.|+|+.+.|++......-.||=..+|+.+.++.-. -..-..|.|..++.+.++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555666999999999999988888888888877789998887621 223456778778878888778888988887754
Q ss_pred Ccee---------EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-ee--E----------EEeCCeeEEE
Q 008393 362 GYSL---------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT--R----------VFKGGTAQMR 419 (567)
Q Consensus 362 ~~~~---------~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~--~----------~~~~~~~~~~ 419 (567)
...+ ......+.....++|.|....++ ..-+-.-+.||.+.... .+ . .+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 2221 11112256678999999988777 55566677777665433 11 1 1223455677
Q ss_pred EecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCC
Q 008393 420 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 420 ~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d 475 (567)
|++..+.+++-+. ++.+...|.... ++..+.-+. .....|+..++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8877777766665 456666665544 232222111 123467777777655544433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.22 Score=50.11 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=40.8
Q ss_pred CceEEEEEeC-------CCCeEEEEEcCCeEEEEECCCCcEE----Ee-ccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 499 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TL-TAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 499 ~~i~~~~~sp-------~~~~l~~~~~dg~I~iwd~~~~~~~----~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
..+..+.|.. .+.++++.-..+.|....+..+..+ .+ ......+..+++.|||.++++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455666653 3344444444568888888755332 22 23445799999999999998888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0049 Score=62.62 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=88.1
Q ss_pred EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCe-------EEEEeCCCcEEEEEcCCCCc-eeEEeccCC--
Q 008393 303 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-------LATSSFDKTVRVWDADNPGY-SLRTFMGHS-- 372 (567)
Q Consensus 303 asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~-------l~s~s~dg~I~iwd~~~~~~-~~~~~~~h~-- 372 (567)
.++.....++-.|++.|+.+..++.|.. |.-+.+.|+.+. -+.|-.|..|.-||.+-.+. .+....+|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3455566788888899999988887777 777777776541 24455667788888764333 111111111
Q ss_pred --CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 008393 373 --ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 373 --~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
....|++-. ..+++++|+.+|.|++||--.......+
T Consensus 429 ~k~nFsc~aTT-----------------------------------------~sG~IvvgS~~GdIRLYdri~~~AKTAl 467 (644)
T KOG2395|consen 429 TKNNFSCFATT-----------------------------------------ESGYIVVGSLKGDIRLYDRIGRRAKTAL 467 (644)
T ss_pred cccccceeeec-----------------------------------------CCceEEEeecCCcEEeehhhhhhhhhcc
Confidence 111121111 1356666666677777766333333456
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
.+-..+|..|..+.+|++|++.+...+.+.++.
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 667789999999999999998888777777664
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.33 Score=49.31 Aligned_cols=219 Identities=12% Similarity=0.118 Sum_probs=107.2
Q ss_pred CCCeEEEEe-CCCcEEEEeCCC----Ceeeeeecc---cC----ccEEEEEECCCCCeEEEEe--C----CCcEEEEEcC
Q 008393 298 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSS--F----DKTVRVWDAD 359 (567)
Q Consensus 298 dg~~lasg~-~dg~I~vwd~~~----~~~~~~l~~---h~----~~V~~i~fsp~~~~l~s~s--~----dg~I~iwd~~ 359 (567)
+.++|+..+ ..+.|+|+|+.+ .+..++++. +. ..-..+.--|+|..++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999973 345555542 11 1122334457888887762 2 2457777777
Q ss_pred CCCceeEEeccC---CCcEEEEEEcCCCCeEEEEEe--------------------CCCcEEEEECCCCeeeEEEeCC--
Q 008393 360 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 414 (567)
Q Consensus 360 ~~~~~~~~~~~h---~~~V~~l~~~p~~~~li~s~~--------------------~dg~I~iwd~~~~~~~~~~~~~-- 414 (567)
+ .......... ...-+.+-|.|..+.+| |.. ....+.+||+.+.+.++++.-+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 3344443322 23345667777655444 542 2358999999999999998754
Q ss_pred ---eeEEEE--ecCCCEEEEEEC-CCeEEEEEC-CCCe----EEEEecCC-----------------CCCeeEEEEcCCC
Q 008393 415 ---TAQMRF--QPHLGRYLAAAA-ENVVSILDA-ETQA----CRLSLQGH-----------------TKPIDSVCWDPSG 466 (567)
Q Consensus 415 ---~~~~~~--~~~~~~l~~~~~-dg~I~i~d~-~~~~----~~~~~~~h-----------------~~~V~~l~~sp~g 466 (567)
...++| .|....-++++. ...|..|-- +.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 223455 444555444443 555555533 4432 22222211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEeCCCCCCCceEEEeecCC----------------CceEEEEEeCCCCeEEEEEc
Q 008393 467 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 467 ~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~----------------~~i~~~~~sp~~~~l~~~~~ 518 (567)
++|+..+-. .|+-||+.....++.+..+...+ +...-+..|.||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999988865 89999999877767666544221 12356788999999988754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.21 Score=48.18 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=103.7
Q ss_pred cEEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEE-ECCCCeEE-EE
Q 008393 374 SVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQACR-LS 449 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~-d~~~~~~~-~~ 449 (567)
.+.+.++++++..+.+... ....++++...................|.+++...++...+....++ +...+... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 6889999999988877663 34455555443322222222355667799996555555555555555 33333221 12
Q ss_pred ecC--CCCCeeEEEEcCCCCEEEEEe----CCeEEEEeCCCCCCC------ceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 450 LQG--HTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 450 ~~~--h~~~V~~l~~sp~g~~l~s~s----~d~I~iwd~~~~~~~------~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
+.. -...|..+.++|||..++... ...|.+--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 112899999999999888776 336766655432222 11222223356789999999998777765
Q ss_pred cCCe-EEE-EECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 518 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 518 ~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
..+. +.. +....+....+..-...+..++...+...++. ..++.|
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~-t~~~~~ 231 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYV-TDDGGV 231 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEE-ECCCcE
Confidence 5542 333 44444433333222233333333333333333 334433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.23 Score=47.33 Aligned_cols=271 Identities=11% Similarity=0.023 Sum_probs=148.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC--ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.+-+..+.|+.+ +...+..+.-++|.|+.+......+..-. +--.+ |.-.|++..++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 344556777654 77777788889999998655443332111 22233 3345789988886666889999876554
Q ss_pred eE--EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 365 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 365 ~~--~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
.. .+......-..++.+ |++-+ .+..|+-+.+.|+.... .+.....+...-..++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 32 333344444667776 44333 56679999999998653 333333332333344445566666666777778
Q ss_pred ECCCCeEEEEecC-CCCCeeEE-EEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 440 DAETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 440 d~~~~~~~~~~~~-h~~~V~~l-~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
|..+.+....+.. ....+.++ .|.-.+++.+....+ .+-+.|+.+.........+...+..-..+... +.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEec
Confidence 8777654333322 11222222 233346666666666 67777776554333333333222222222222 2333333
Q ss_pred EcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 517 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+ ...+.+....+.+ ...+...-+.+.+.+-+.+++.+...++.+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 333 3444444433333 1222222334444444566788888899898885
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0036 Score=65.62 Aligned_cols=138 Identities=10% Similarity=0.026 Sum_probs=96.1
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEE-ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.++...+.+++.|+.-|.+++|+-..++.... ..+..+.+..++++++..++|.|+.. .|.++-+........+..-.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 34555677888888888888888777654432 22344556677888999999999988 89898887654433333222
Q ss_pred ---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-----EEEeccccCCeeEEEEecCCCEEEE
Q 008393 496 ---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 496 ---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~spdg~~l~s 556 (567)
.|...|++++|++++..+++|...|+|.+-.+.... ...+....+.|-.+.+. ++.+|++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 256789999999999999999999999988887721 11444556677777664 3334433
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.035 Score=60.04 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=120.8
Q ss_pred cCCCCeEEEEeCCC------cEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCC-C-----cEEEEEcCCCC
Q 008393 296 SSDGKLLATGGHDK------KAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-K-----TVRVWDADNPG 362 (567)
Q Consensus 296 s~dg~~lasg~~dg------~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~d-g-----~I~iwd~~~~~ 362 (567)
+..+.+++.||.++ .+..||..+........- +...-.++++. ++...++|+.| | ++..||.....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 34456777887763 677888877644332221 12222333333 45678888888 3 57788887644
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEEE--eCCeeEEEEecCCCE-EEEEECC-
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR-YLAAAAE- 433 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~d- 433 (567)
. .....-...-..+....-+..+++.|+.|| .|-.||..+.+....- ...........-+++ +++|+.+
T Consensus 361 W--~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 W--TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred e--eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 2 222111111111122222456888898886 4777887776543332 122222332222344 4455533
Q ss_pred -----CeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 434 -----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 434 -----g~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
..+..||..+.+... .+..-.... .++. -++.+.+.|+.+ +|..||..+. ....+..+......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCcccccc
Confidence 467889988765432 222111111 2333 356666666644 3788888764 22222222222222
Q ss_pred eEEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEe
Q 008393 501 FHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTL 535 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~ 535 (567)
+. +..-++...++|+.|+ +|..||..+.+....
T Consensus 516 ~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 516 VG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred cc--EEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 21 2223555667777665 788888887776533
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.027 Score=60.87 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=115.7
Q ss_pred CCCeEEEEeCCC------cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCee
Q 008393 340 SMPRLATSSFDK------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 407 (567)
Q Consensus 340 ~~~~l~s~s~dg------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~ 407 (567)
.+.+++.|+.++ .+..||..+.......-........++++.. +.++++||.| ..+..||..+.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 345667777663 5788888874222111111233344555553 4688889988 3678888888774
Q ss_pred eEEE--eCCeeEEEEec-CCCEEEEEECCC-----eEEEEECCCCeEEEEecCCCCCeeEEE-EcCCCCEEEEEeCC---
Q 008393 408 TRVF--KGGTAQMRFQP-HLGRYLAAAAEN-----VVSILDAETQACRLSLQGHTKPIDSVC-WDPSGELLASVSED--- 475 (567)
Q Consensus 408 ~~~~--~~~~~~~~~~~-~~~~l~~~~~dg-----~I~i~d~~~~~~~~~~~~h~~~V~~l~-~sp~g~~l~s~s~d--- 475 (567)
...- ........... ++..+++|+.|| .|..||.++.+-...-.-.. .....+ ..-+|.+.++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCc
Confidence 4421 11222222222 344455666664 68889888764322211111 222222 12357777777633
Q ss_pred ----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEeccccCCeeEEE
Q 008393 476 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALA 546 (567)
Q Consensus 476 ----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l~ 546 (567)
.+..||..+. ....+..+........ +..-++...++||.++ +|..||..+.+...+..-......+.
T Consensus 441 ~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETN-TWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCC-ceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 4788888764 2222323322222222 2333566666777665 58999999988775543222222222
Q ss_pred E-ecCCCEEEEEECCCc
Q 008393 547 V-STETGYVASASHDKF 562 (567)
Q Consensus 547 ~-spdg~~l~s~s~Dg~ 562 (567)
. .-+++..++|+.||.
T Consensus 518 ~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCEEEEEecccCc
Confidence 2 235677888888864
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.79 Score=50.70 Aligned_cols=270 Identities=15% Similarity=0.138 Sum_probs=151.5
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeC--CCCeeeeee--cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~--~~~~~~~~l--~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
..|.-..|-.|..+|.++..||.+.-|-+ .++.....- .--..++.--.|+..++.-+.+..|.-..+|.... +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 34556666667889999999998876654 444433222 12344566666766666555555566666776653 22
Q ss_pred eeEEeccCCCcEEEEE-EcC-CCCeEEEEEeCCCcEEEEECCCCeee--EEEe--CCeeEEEEecCCCEEEEEEC-----
Q 008393 364 SLRTFMGHSASVMSLD-FHP-NKDDLICSCDGDGEIRYWSINNGSCT--RVFK--GGTAQMRFQPHLGRYLAAAA----- 432 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~-~~p-~~~~li~s~~~dg~I~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~----- 432 (567)
....+. -..+..+| |+. .....++++. .+.+++.-+..-..+ ++.. .....+++.+..-.+.+.+.
T Consensus 663 v~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 221111 01122221 221 1222333443 566777766653322 2222 33455666653333333222
Q ss_pred ------C---CeEEEEECCCCeEEEEecCC-CC---CeeEEEEcCC-CCEEEEEeC-----------CeEEEEeCCCCCC
Q 008393 433 ------E---NVVSILDAETQACRLSLQGH-TK---PIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 487 (567)
Q Consensus 433 ------d---g~I~i~d~~~~~~~~~~~~h-~~---~V~~l~~sp~-g~~l~s~s~-----------d~I~iwd~~~~~~ 487 (567)
+ ..++++|-.+.+.+...+-. .. .|.++.|..| +.+++.|.. +.|.||.+..+..
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 24677887777665443321 12 2444558777 677777752 2577887776555
Q ss_pred CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+.+++....+....-+.| +|++| ++-+..|++|++.+++.+ .-..|..++..+.+.-.|..++.|..=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5555555544433322233 34433 444568999999998665 45578888999999889999999876665543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.095 Score=56.73 Aligned_cols=199 Identities=7% Similarity=0.019 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCceeEEeccCCCcE--EEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEE--eCCeeE-EEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVF--KGGTAQ-MRF 420 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~--~~~~~~-~~~ 420 (567)
.+..||..+... ..+..-.... .+++.. ++.+++.||.+ ..+..||..+......- ...... ...
T Consensus 273 ~v~~yd~~~~~W--~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEY--SVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeE--EECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 467788876332 2221111111 223332 35677777754 34778898877543221 111111 122
Q ss_pred ecCCCEEEEEECC-----CeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeCC------------------
Q 008393 421 QPHLGRYLAAAAE-----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------------------ 475 (567)
Q Consensus 421 ~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~d------------------ 475 (567)
.-++..+++|+.+ ..+..||..+.+-.. .+.........+. -+|++.+.|+.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 2334445556554 358899988764322 2221111111222 357777777643
Q ss_pred ------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC------CeEEEEECCC-CcEEEec---ccc
Q 008393 476 ------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHE 539 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d------g~I~iwd~~~-~~~~~~~---~h~ 539 (567)
.|..||..+. ....+..+.... ....+..-+++..++||.+ ..+..||..+ .+...+. ...
T Consensus 427 ~~~~~~~ve~YDP~td-~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNN-IWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccceEEEECCCCC-eEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 3667777653 112222221111 1111233345555556543 2478899998 5554322 222
Q ss_pred CCeeEEEEecCCCEEEEEECCC
Q 008393 540 GLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s~s~Dg 561 (567)
.....+. -++++.++||.||
T Consensus 504 ~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred ccceeEE--ECCEEEEEeeecc
Confidence 2233333 3788889999888
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0052 Score=63.72 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE-EEEEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
..|.-+.|+|.-.++|.+..+ .|.+..++ . ..+.++..++..++ +++|.|||+.|++|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-W---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-c---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999998 78888875 2 67888886777776 999999999999999999999999999887
Q ss_pred EEe--ccccCCeeEEEEe
Q 008393 533 MTL--TAHEGLIAALAVS 548 (567)
Q Consensus 533 ~~~--~~h~~~V~~l~~s 548 (567)
+.- ......|.++-|+
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 733 4556678888885
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0014 Score=59.62 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=81.3
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEe---CCe-eEE
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGT-AQM 418 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~---~~~-~~~ 418 (567)
|..-+.||.|+-+++.......+.-..|...-.-+.+ +. -++.|+.+|.|++|...-.... ..+. ..+ ..+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445667778777776422222222222222111112 23 3447888999999988732111 1111 111 112
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-CCeeEEEEcCCCCEEEEE--eCC-eEEEEeCCCC
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 485 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~--s~d-~I~iwd~~~~ 485 (567)
..-.++...++++.++.|+.|++.-.+.+-....|. .++..+.....+++|++. +.| .++.|++...
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222334567788889999999999888877777777 566666666667777777 677 7888888643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.44 Score=53.13 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc--------EEEEEECC----------------CCCeEEEEeCCCcEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 354 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~--------V~~i~fsp----------------~~~~l~s~s~dg~I~ 354 (567)
+..|++++.++.|.-.|..+|+.+..+...... ++.+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888999999999888776533211 22333321 344788899999999
Q ss_pred EEEcCCCCceeEEeccCCCcEE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEECCCCeeeE
Q 008393 355 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 409 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~-------------~l~~~p--~~~~li~s~~~----------dg~I~iwd~~~~~~~~ 409 (567)
-.|.++ ++.+..+. ..+.|. .+.-.| .++.++ .|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999988 44443332 111110 000011 023344 4532 6889999999999988
Q ss_pred EEeC
Q 008393 410 VFKG 413 (567)
Q Consensus 410 ~~~~ 413 (567)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.52 Score=44.90 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 290 VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg--~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
.-.+.|..+|.++-+.|.-| .|+.+|+.+++......-.. ..-..|+.. +++.+...=.++...+||..+ -+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc-ceEEE
Confidence 44678878888888877766 79999999998776544211 112223332 222333344578899999987 56666
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEEC-CCeEE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA-ENVVS 437 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~-dg~I~ 437 (567)
.+. ..+.=+.|+ .++..|++|- ....|+++|..+.+..+.+.- ..+.+.+. ++.+++--. ...|.
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEE
Confidence 664 345566777 3466777554 467899999988877666542 23334454 455555544 78999
Q ss_pred EEECCCCeEEEEecC------------C---CCCeeEEEEcCCCCEEEEEeCC
Q 008393 438 ILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 438 i~d~~~~~~~~~~~~------------h---~~~V~~l~~sp~g~~l~s~s~d 475 (567)
..|..+|+++..+.- + ..-.+.|+|+|....|...+..
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 999999998876531 1 2457899999988777776665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.12 Score=42.10 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=60.8
Q ss_pred EEEEEE---cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 375 VMSLDF---HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 375 V~~l~~---~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
|++|++ ..+|..-|++|+.|..|++|+-..-.........+..++-... ++++.+..+|+|-+|+-.. .++..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeec
Confidence 455554 4455566779999999999986643333333345555555554 7899999999999998643 333444
Q ss_pred CCCCCeeEEEEcC-CC--C-EEEEEeCC-eE
Q 008393 452 GHTKPIDSVCWDP-SG--E-LLASVSED-SV 477 (567)
Q Consensus 452 ~h~~~V~~l~~sp-~g--~-~l~s~s~d-~I 477 (567)
. +..+.++++.. ++ . -|++|-.+ .|
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 3 23366665543 32 1 45555444 44
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.25 Score=46.84 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=107.9
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEEC-C-CeEEEEECCCCeEEEEecCCCCC-
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-E-NVVSILDAETQACRLSLQGHTKP- 456 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-g~I~i~d~~~~~~~~~~~~h~~~- 456 (567)
..+++.+-+++.+++|+|..- ..+......+.++|....-++-.. - -...+||........++...+..
T Consensus 43 ~~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH 114 (366)
T COG3490 43 DARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH 114 (366)
T ss_pred eccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce
Confidence 345666666666666554321 112223345667776665544444 3 35677888776555444332221
Q ss_pred -eeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-----------
Q 008393 457 -IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----------- 518 (567)
Q Consensus 457 -V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~----------- 518 (567)
.-.=+|++||.+|+..-.| .|-|||.+ .....+-++..++-....+.+.+||+.++++..
T Consensus 115 fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~ 192 (366)
T COG3490 115 FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRT 192 (366)
T ss_pred eecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCcc
Confidence 1124699999999987654 38999997 345778889999999999999999998887654
Q ss_pred -------CCeEEEEECCCCcEE---Eec--cccCCeeEEEEecCCCEEEEEE
Q 008393 519 -------YQSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 519 -------dg~I~iwd~~~~~~~---~~~--~h~~~V~~l~~spdg~~l~s~s 558 (567)
.-++.+.|..++..+ ++. .+.-.|..++..+||..++-+-
T Consensus 193 ~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 193 ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 114555565556544 233 4556788899988888766553
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.033 Score=61.47 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 376 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 376 (567)
.+..++.|+..|.|-..|+... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3457888888899988887542 22222233467899999999999999999999999999998 667777776666655
Q ss_pred EEE---EcCCCCeEEEEEeCCCcEEEEEC
Q 008393 377 SLD---FHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 377 ~l~---~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
.+- +..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 333433 4546666565 5554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.61 Score=44.65 Aligned_cols=201 Identities=13% Similarity=0.152 Sum_probs=102.6
Q ss_pred ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc-CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 325 l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
+.+-...|.++.|+|+.+.|++......-.||=. +.+..++++.- .-.....|.|..++ .++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 3445556999999999998888887775555533 34777766541 12334556676554 344455556777776655
Q ss_pred CCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 404 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
....+..++.. .| .+............++|+|....|..+-+. -+.||.+
T Consensus 159 ~~t~~~~~~~~--------------------~i---------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 159 ADTTVISAKVQ--------------------KI---------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CCccEEeccce--------------------EE---------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 44322211100 00 000111113456678888876666666555 4444444
Q ss_pred CCCCCCceEEEeecC-------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEE--Eeccc----c---CCeeEE
Q 008393 483 GSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TLTAH----E---GLIAAL 545 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~-------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~--~~~~h----~---~~V~~l 545 (567)
......-.++....+ -..+.++.|++....|++-+ .++.|.-.|....-.- .+... . ...-.+
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGi 289 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGI 289 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCccee
Confidence 322211111111111 12355667777555555544 4456666676554321 22111 1 123457
Q ss_pred EEecCCCEEEE
Q 008393 546 AVSTETGYVAS 556 (567)
Q Consensus 546 ~~spdg~~l~s 556 (567)
+..++|.+.++
T Consensus 290 amDd~g~lYIv 300 (316)
T COG3204 290 AMDDDGNLYIV 300 (316)
T ss_pred EECCCCCEEEE
Confidence 77777765443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.1 Score=46.19 Aligned_cols=259 Identities=15% Similarity=0.167 Sum_probs=143.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeee--ee-e-cccCccEEEEEEC---C--CCCeEEEEeCCCcEEEEEcCCCC-------
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSK--TN-L-EEHSSLITDVRFS---P--SMPRLATSSFDKTVRVWDADNPG------- 362 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~--~~-l-~~h~~~V~~i~fs---p--~~~~l~s~s~dg~I~iwd~~~~~------- 362 (567)
...+++|+..|.++||+....... .. + ..-..+|..|..- + +...||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998543211 11 1 1234567776653 2 2224444 456678888873211
Q ss_pred -ceeEEeccCCC--cEEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC
Q 008393 363 -YSLRTFMGHSA--SVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 363 -~~~~~~~~h~~--~V~~l~~~p----~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d 433 (567)
..+.....|.- ....+++-| .+..+|+.-+-||.+.+|+-+.-...+.+.+ -...+.|.+..+.+++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 22333334432 233344332 2357888999999999999887666555554 23568899999999999998
Q ss_pred CeEEEEECCC--------------------C---eEEEEecCCCCCeeEE---EEcCCCCEEEEEeCCeEEEEeCCCCCC
Q 008393 434 NVVSILDAET--------------------Q---ACRLSLQGHTKPIDSV---CWDPSGELLASVSEDSVRVWTVGSGSE 487 (567)
Q Consensus 434 g~I~i~d~~~--------------------~---~~~~~~~~h~~~V~~l---~~sp~g~~l~s~s~d~I~iwd~~~~~~ 487 (567)
..|..|.... + .+-+++.- ...+..| .++.....++.-++..+.+.+-. | .
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~ 272 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S 272 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence 8888885321 0 01111111 1223333 33333345555666666666653 2 2
Q ss_pred CceEEEeecCCCceEEEEEeC----CC---CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEE---ecCCCEEEEE
Q 008393 488 GECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV---STETGYVASA 557 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp----~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~---spdg~~l~s~ 557 (567)
.+....+.. .+...+.|.. ++ ..+++++.++.+.||.=.+-....-. ...+| ++.. ..-...|++-
T Consensus 273 l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l-~~~PV-al~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 273 LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL-PHVPV-ALSVANFNGLKGLIVSL 348 (418)
T ss_pred EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC-CCCCE-EEEecccCCCCceEEEE
Confidence 233333322 2222222222 22 24889999999999964332222111 11222 3332 2234578888
Q ss_pred ECCCcEEE
Q 008393 558 SHDKFVKL 565 (567)
Q Consensus 558 s~Dg~I~i 565 (567)
+.||.|.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88888764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.18 Score=54.60 Aligned_cols=197 Identities=9% Similarity=0.045 Sum_probs=93.8
Q ss_pred CCCeEEEEeCCC------cEEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCC
Q 008393 340 SMPRLATSSFDK------TVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNG 405 (567)
Q Consensus 340 ~~~~l~s~s~dg------~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~ 405 (567)
++..++.|+.++ .+..||..+... ..+.. ..... +++.. ++.+++.||.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 445566665432 467788765332 22221 11111 22222 35577777765 35778888776
Q ss_pred eeeEEE--eCCeeE-EEEecCCCEEEEEECC------CeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC
Q 008393 406 SCTRVF--KGGTAQ-MRFQPHLGRYLAAAAE------NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 406 ~~~~~~--~~~~~~-~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d 475 (567)
+....- ..+... .....++..++.|+.+ +.+..||..+.+-...-..... .-.+++ ..++.+++.|+.+
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 447 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGIS 447 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCcc
Confidence 543321 111111 1122233444555521 4688999887643321111101 111222 2356666666532
Q ss_pred ---------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC
Q 008393 476 ---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL 541 (567)
Q Consensus 476 ---------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~ 541 (567)
.+.+||..+.. ...+..+.........+.+ ++..++.||.+ +.|.+||..+.....+......
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 524 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKV 524 (534)
T ss_pred CCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccc
Confidence 38888887642 1122111111111122222 56656666543 4789999988876655544444
Q ss_pred eeEE
Q 008393 542 IAAL 545 (567)
Q Consensus 542 V~~l 545 (567)
+.++
T Consensus 525 ~~~~ 528 (534)
T PHA03098 525 IGSL 528 (534)
T ss_pred ccce
Confidence 4333
|
|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.003 Score=70.65 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.2
Q ss_pred HhhcCC
Q 008393 12 AQQNLT 17 (567)
Q Consensus 12 ~~~~~~ 17 (567)
|++-|.
T Consensus 2103 ~~~ql~ 2108 (2220)
T KOG3598|consen 2103 AHHQLV 2108 (2220)
T ss_pred HHHHHH
Confidence 333333
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0086 Score=54.66 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE-EEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-ccc-CC
Q 008393 466 GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHE-GL 541 (567)
Q Consensus 466 g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~-~~ 541 (567)
+.-+++|+.+ .|++|...-.. .....+......+. .+..-.++.+.++++.++.|+.|++.-++.+.+. .|. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 4457777777 88888875211 11111111122222 2233445668899999999999999999888544 555 56
Q ss_pred eeEEEEecCCCEEEEE--ECCCcEEEcC
Q 008393 542 IAALAVSTETGYVASA--SHDKFVKLWK 567 (567)
Q Consensus 542 V~~l~~spdg~~l~s~--s~Dg~I~iWd 567 (567)
+..+..+..+++|+.+ |.|..++.|+
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcc
Confidence 7777777778888888 8888899886
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.2 Score=43.86 Aligned_cols=163 Identities=11% Similarity=0.082 Sum_probs=96.9
Q ss_pred cEEEEECCCCeeeEEEeC---------CeeEEEEecCC-----CEEEEEEC-CCeEEEEECCCCeEEEEecCCC------
Q 008393 396 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHL-----GRYLAAAA-ENVVSILDAETQACRLSLQGHT------ 454 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~-----~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~------ 454 (567)
.|.+||+.+.+.++.+.- ....+.+.... ..++.+.. .+.|.+||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999988877642 23456666532 23333333 4699999999987766554321
Q ss_pred -------------CCeeEEEEcC---CCCEEEEEeCCeEEEEeCCCC-----CC------CceEEEeecCCCceEEEEEe
Q 008393 455 -------------KPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE------GECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 455 -------------~~V~~l~~sp---~g~~l~s~s~d~I~iwd~~~~-----~~------~~~i~~~~~~~~~i~~~~~s 507 (567)
..+..++.+| ++++|+......-++|.+.+. .. ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2366677766 777888777654455554321 11 11223332223456778999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCC----cEE--Eeccc-cCCeeEEEEec--CCCEEEEEE
Q 008393 508 PTYPSLLVIGCYQSLELWNMSEN----KTM--TLTAH-EGLIAALAVST--ETGYVASAS 558 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~----~~~--~~~~h-~~~V~~l~~sp--dg~~l~s~s 558 (567)
++|..+++--..+.|..|+..+. ... ..... -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99988888888899999999872 211 22222 35788999998 777666543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.51 Score=47.68 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee----eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~----~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..++|.++.||+|.+.||+--.+++|.+++....+.. .+.+..+..|....|+.+ ..+|.-...| +.+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4569999999999999999999999999988432222 222344556888999866 5677777666 888988876
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeee
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCT 408 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~ 408 (567)
...++..+.|...|....|+++.+-++.+.+ ..+.+.=+-++++...
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 7777888889999999999998765554444 4455555555555443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.1 Score=42.37 Aligned_cols=249 Identities=12% Similarity=0.022 Sum_probs=152.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe-
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF- 368 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~- 368 (567)
-..++-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+...++=+.. .|.-.|-++.+.....+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 3468888999988998888888888888998877766666667788888988876664443 45556655422211111
Q ss_pred -ccCCCcEEEEEEcCCCCeEEEEEeC---------CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 369 -MGHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 369 -~~h~~~V~~l~~~p~~~~li~s~~~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
..-........|.+.|...| ++.. .+.|++|+...+ .....++..|++...++.-.++.|..
T Consensus 143 ~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccceEE
Confidence 12345677888999876544 6642 123444443322 24567889999988888888888888
Q ss_pred EECCCCeEEEE--ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 439 LDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 439 ~d~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
.|..++..... -.........+--++.|..-++.... .+..||-.... -.-..+.+....-.++.+...++.-+.
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEee
Confidence 88877622211 11112334455556777776665555 77777765421 222344444555566666666664444
Q ss_pred EEcCCeEEEEECCCCcEEEeccccCCeeEEEEec
Q 008393 516 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVST 549 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 549 (567)
-...+.|.-||-++.....+......+..+.+..
T Consensus 293 ea~agai~rfdpeta~ftv~p~pr~n~gn~ql~g 326 (353)
T COG4257 293 EADAGAIGRFDPETARFTVLPIPRPNSGNIQLDG 326 (353)
T ss_pred ccccCceeecCcccceEEEecCCCCCCCceeccC
Confidence 4455677777777666555444333333444433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.65 Score=44.71 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=88.3
Q ss_pred CeeEEEEecCCCEEEEEE---CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEe-CCCCCCC
Q 008393 414 GTAQMRFQPHLGRYLAAA---AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT-VGSGSEG 488 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd-~~~~~~~ 488 (567)
.....++++++..+++.. ....++++........ .+.+ ..+....|++++.+.+....+ ..+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 456778999988887777 2345666654433222 2222 367888999998877766655 566663 2332221
Q ss_pred ceEEEeecCCCceEEEEEeCCCCeEEEEEc---CCeEEEEECC---CC--cEE----Eec-cccCCeeEEEEecCCCEEE
Q 008393 489 ECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMS---EN--KTM----TLT-AHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 489 ~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~I~iwd~~---~~--~~~----~~~-~h~~~V~~l~~spdg~~l~ 555 (567)
...-........|..+.++|||..+++... ++.|++--+. .+ ..+ .+. .....+.+++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 111111111228999999999999988773 4677776543 22 111 222 3356799999999998877
Q ss_pred EEECC
Q 008393 556 SASHD 560 (567)
Q Consensus 556 s~s~D 560 (567)
.+...
T Consensus 182 ~~~~~ 186 (253)
T PF10647_consen 182 LGRSA 186 (253)
T ss_pred EeCCC
Confidence 66543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.02 Score=38.91 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS 321 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~ 321 (567)
...|.+++|+|..++||.|..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.96 Score=45.75 Aligned_cols=173 Identities=10% Similarity=0.006 Sum_probs=80.5
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeeeEEEe-------CCeeE-EEEecCCCEEEEEECC-----------CeEEEEE
Q 008393 385 DDLICSCDGD-----GEIRYWSINNGSCTRVFK-------GGTAQ-MRFQPHLGRYLAAAAE-----------NVVSILD 440 (567)
Q Consensus 385 ~~li~s~~~d-----g~I~iwd~~~~~~~~~~~-------~~~~~-~~~~~~~~~l~~~~~d-----------g~I~i~d 440 (567)
+.+++.|+.+ ..+.+||+.+.+....-. ..... .....++..++.++.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566677653 357889988766543211 11111 1122233445555532 2578899
Q ss_pred CCCCeEEEEecCC----CC-CeeEEEEcCCCCEEEEEeC--------------CeEEEEeCCCCCCCceEEEeec-C-CC
Q 008393 441 AETQACRLSLQGH----TK-PIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-N-GN 499 (567)
Q Consensus 441 ~~~~~~~~~~~~h----~~-~V~~l~~sp~g~~l~s~s~--------------d~I~iwd~~~~~~~~~i~~~~~-~-~~ 499 (567)
.++.+-.. +... .. .-.+++. -++++++.++. +.|.+||+.+.. ...+..... . ..
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 88764332 1111 11 1112222 34565554431 258888887542 122211100 0 11
Q ss_pred ceEEEEEeCCCCeEEEEEcC--------------CeEEEEECCCCcEEEeccc------cCC--eeEEEEecCCCEEEEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASA 557 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~~~h------~~~--V~~l~~spdg~~l~s~ 557 (567)
...+ +...++..++.|+.. +.|+.||+.+.....+... ... ..++.+.-++++++.|
T Consensus 243 ~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFA-HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceee-eEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 1122 222345666666641 2688999887765544211 111 1233333445677777
Q ss_pred ECCC
Q 008393 558 SHDK 561 (567)
Q Consensus 558 s~Dg 561 (567)
|.++
T Consensus 322 G~~~ 325 (341)
T PLN02153 322 GKLP 325 (341)
T ss_pred CcCC
Confidence 7643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.8 Score=42.66 Aligned_cols=222 Identities=12% Similarity=0.119 Sum_probs=105.7
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--C---CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--h---~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
...+.+|.|.....-+++|. .+. |+.....++....... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 44789999985555555554 453 3444443443322211 1 22366777764 3344444 344 4444444
Q ss_pred CCeeeEEE------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e
Q 008393 404 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 476 (567)
Q Consensus 404 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~ 476 (567)
.++.-..+ .+....+....+ +...+++..|.|+.-.-....-......-...+..+..++||.+++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44432221 222223333333 344445555554443322222222334455778889999999999999888 6
Q ss_pred EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC-CCCcEEE---ec--cccCCeeEEEEecC
Q 008393 477 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMT---LT--AHEGLIAALAVSTE 550 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~-~~~~~~~---~~--~h~~~V~~l~~spd 550 (567)
..-||-.. . .-...-......|..+.|.|++...+ ....|.|++=+. ...+... .. ...-.+..++|.++
T Consensus 168 ~~s~~~G~--~-~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQ--T-TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT---S-S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCC--c-cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 67787532 1 12222223467899999999987544 558888888872 2222221 11 12234789999988
Q ss_pred CCEEEEEECCCcE
Q 008393 551 TGYVASASHDKFV 563 (567)
Q Consensus 551 g~~l~s~s~Dg~I 563 (567)
+...|+|+. |.|
T Consensus 244 ~~~wa~gg~-G~l 255 (302)
T PF14870_consen 244 NEIWAVGGS-GTL 255 (302)
T ss_dssp S-EEEEEST-T-E
T ss_pred CCEEEEeCC-ccE
Confidence 877776654 444
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.1 Score=43.26 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=110.0
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC----CCCCe--EEEEe-CC---CcEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSS-FD---KTVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs----p~~~~--l~s~s-~d---g~I~iwd~~~~~~~~~~ 367 (567)
...+++....++-+.+||++ |+.+..+.. +.++.+..- -+++. |+.++ .+ .+|++|.++.....+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 44577777788899999986 555555542 223333221 13332 44444 32 46999988742233333
Q ss_pred ecc-------CCCcEEEEEEc--C-CCCeEEEEEeCCCcEEEEECC---CC----eeeEEEeC--CeeEEEEecCCCEEE
Q 008393 368 FMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRYL 428 (567)
Q Consensus 368 ~~~-------h~~~V~~l~~~--p-~~~~li~s~~~dg~I~iwd~~---~~----~~~~~~~~--~~~~~~~~~~~~~l~ 428 (567)
+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..+......+.++
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12347788874 2 456677788889999888775 23 34666653 567788888889999
Q ss_pred EEECCCeEEEEECCC-----CeEEEEecC--CCCCeeEEEEcC--CCC-EEEEEeCC--eEEEEeCCCC
Q 008393 429 AAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~-----~~~~~~~~~--h~~~V~~l~~sp--~g~-~l~s~s~d--~I~iwd~~~~ 485 (567)
++-++.-|.-|+.+- ++.+....+ ....|..|++.. +++ ||+..+.+ ...||+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999999999863 233333332 345677887753 433 66666655 8999998643
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.93 E-value=3.7 Score=45.73 Aligned_cols=269 Identities=13% Similarity=0.091 Sum_probs=145.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCc-
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGY- 363 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~- 363 (567)
+.++.--.|+..++.-+.+..|.-..+|.. +++.+.+--.-...-.-+.|+.+ ...|+++. .+.+++..++.-.+
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence 445555566665544444444555555543 33333221111110111123222 22344444 34477777764222
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--------------CcEEEEECCCCeeeEEEeCC-------eeEEEEec
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD--------------GEIRYWSINNGSCTRVFKGG-------TAQMRFQP 422 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--------------g~I~iwd~~~~~~~~~~~~~-------~~~~~~~~ 422 (567)
.+++.. -......+++.+. ..++.+.+.- ..++++|-++.+.+..++-. +....|..
T Consensus 707 ~irtvp-l~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~ 784 (1096)
T KOG1897|consen 707 HIRTVP-LGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTD 784 (1096)
T ss_pred ceeeec-CCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecC
Confidence 233332 3344566777663 2233232211 24677777777666554421 22334666
Q ss_pred C-CCEEEEEEC----------CCeEEEEECCCCeEEEEecCC--CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 423 H-LGRYLAAAA----------ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 423 ~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+ +.++++|+. .|.|.+|.......+.....+ .+.+.+++. -+|++||.-+. .|++|++.+. +
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~-~vrLye~t~~---~ 859 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQ-SVRLYEWTTE---R 859 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCc-EEEEEEcccc---c
Confidence 6 455566553 378888887763333222221 344555543 25666654322 7899988665 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.++.-..+..++..+.+.-.+..+++|...+.+.+. +-.++... .-.-+..+.+++.+-.+..|+ .+..+|.+.+
T Consensus 860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEE
Confidence 455555667788888999999999999999876654 44454455 334677888888886555444 4555666654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.2 Score=43.01 Aligned_cols=267 Identities=10% Similarity=0.079 Sum_probs=130.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeee----cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l----~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
...+++++|..+.+-+|+|. +|.| |... .|+.-... ......+.++.|.++ ..+++ +..+. ||.....
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55788999986666677664 4543 3222 22221111 112334778888654 33443 44553 3333333
Q ss_pred CceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----EeCCeeEEEEecCCCEEEEEECCC
Q 008393 362 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 362 ~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
+.....+. ........+.....+ .+++. +..|.|..=+ ..++.-.. ..+....+.+.++ +.+++.+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~-g~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPG-TAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPD-GKYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCC-cceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCC-CeEEEEeCCc
Confidence 43333321 011112222222222 23323 3344332221 12221111 1234556777776 4566666667
Q ss_pred eEEEE-ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEe-ecCCCceEEEEEeCCCCe
Q 008393 435 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 435 ~I~i~-d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~~sp~~~~ 512 (567)
.+..- |.....-......-...++++.+.+++.+++++..+.+++=....+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 66543 2221111112223446788999999999887776655432223333322221110 11224577888998776
Q ss_pred EEEEEcCCeEEEEECCCCcEEE-ec---cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~-~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++++.+|.|.. ....++... .. .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 566666776653 445554432 21 2223577788876666655 55677776653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.4 Score=43.33 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=79.2
Q ss_pred cEEEEEECCCCCeEEEEe-----------CCC-cEEEEEcCC-CCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 331 LITDVRFSPSMPRLATSS-----------FDK-TVRVWDADN-PGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s-----------~dg-~I~iwd~~~-~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
....|+|.++|+++++-. ..+ .|.+++-.+ .+. ....+.........|++.+++ ++++ ...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~- 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPP- 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCC-
Confidence 466788999888766643 223 676665432 222 223443334456889998886 5544 333
Q ss_pred cEEEE-ECCCC-----eee---EEEeCC-------eeEEEEecCCCEEEEEEC-------------------CCeEEEEE
Q 008393 396 EIRYW-SINNG-----SCT---RVFKGG-------TAQMRFQPHLGRYLAAAA-------------------ENVVSILD 440 (567)
Q Consensus 396 ~I~iw-d~~~~-----~~~---~~~~~~-------~~~~~~~~~~~~l~~~~~-------------------dg~I~i~d 440 (567)
.|..| |.... +.. ..+... ...+.|.|++..+++.+. .+.|.-+|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 45444 54321 111 112221 346889998766665442 14567777
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
..+++....-.++ .....++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 7766544333333 345689999999988765543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.9 Score=46.26 Aligned_cols=176 Identities=13% Similarity=0.201 Sum_probs=99.8
Q ss_pred ccCccEEEEEEC---C----CCCeEEEEeCCCcEEEEEc------CCCC--------ceeEEecc---CCCcEEEEEEcC
Q 008393 327 EHSSLITDVRFS---P----SMPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP 382 (567)
Q Consensus 327 ~h~~~V~~i~fs---p----~~~~l~s~s~dg~I~iwd~------~~~~--------~~~~~~~~---h~~~V~~l~~~p 382 (567)
....+|..|+|. . ..++|++= ....+.|+.. .... .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456778888887 2 12344443 4445666661 1100 12233321 234567899999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEE
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 462 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~ 462 (567)
....-|+..+..|...||++......+. ....+.....|.| ++|... ......|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~-------------~~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKS-------------SNLRLSRNISGSI-IFDPEE----------LSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCC-------------cceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence 8777888999999999999922111100 0111111222333 233221 144567899
Q ss_pred cCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCC
Q 008393 463 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 463 sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~ 529 (567)
..+...|+.++...+.++|+.+......+ ........|..+.-++... ++++. ....|...++..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 99888888888889999999876432321 2223456677777777632 22222 335677777665
|
These proteins are found in fungi. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.9 Score=48.17 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.9
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeCCee---------------EEEEec--CCCEEEEEEC----------CCeEEEE
Q 008393 387 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 439 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~~~~~~~~~~---------------~~~~~~--~~~~l~~~~~----------dg~I~i~ 439 (567)
.|+.++.|+.|.-.|.++++.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 444778899999999999998876642110 001111 2466777653 5889999
Q ss_pred ECCCCeEEEEecC
Q 008393 440 DAETQACRLSLQG 452 (567)
Q Consensus 440 d~~~~~~~~~~~~ 452 (567)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.42 Score=49.91 Aligned_cols=170 Identities=13% Similarity=0.205 Sum_probs=101.8
Q ss_pred CcEEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeEEEeCCeeEEEEecC----CCEEEEEECCCeEEEEECC----
Q 008393 373 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPH----LGRYLAAAAENVVSILDAE---- 442 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~I~i~d~~---- 442 (567)
.+|..++|. ||+.++.+.- .+|.+++=|-. .+..| .++..+.|.|- ...+++.-....|.+|-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 467888887 5677776643 24444433321 22222 35667778775 3468888889999999864
Q ss_pred -CCeEEEEecCCC---CC--eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 443 -TQACRLSLQGHT---KP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 443 -~~~~~~~~~~h~---~~--V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
+.+.+..-..+- -+ -..+.|+|...+|+.-... .-.++++..... .....+ ...+.|+|.+|..||.+|++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence 223322222111 11 1356799999988887766 435566654322 222233 45678999999999998888
Q ss_pred EEcCC-eEEEEECCCCcEE-----EeccccCCeeEEEEec
Q 008393 516 IGCYQ-SLELWNMSENKTM-----TLTAHEGLIAALAVST 549 (567)
Q Consensus 516 ~~~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~sp 549 (567)
+-... .-+|||-...... .+..-.+.|.++.-.-
T Consensus 173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 76554 6789986544322 2334445666665443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.12 Score=57.36 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=58.2
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE---CCCCCeEEEEeCCCcEEEEEc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF---SPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f---sp~~~~l~s~s~dg~I~iwd~ 358 (567)
.-.++|++++|+-||++++.|-.+|.|.+||+.+++..+.+..|..+.+.+.+ ..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 34789999999999999999999999999999999999999887776665544 445557777777775 5554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.38 Score=52.03 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=88.0
Q ss_pred CCCCeEEEEeCCC------cEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCCc
Q 008393 297 SDGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 363 (567)
Q Consensus 297 ~dg~~lasg~~dg------~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~~ 363 (567)
.++.+++.||.++ .+..||..+.+.... +.........+.+ ++..++.|+.+ ..+..||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4556777777543 577888876654322 1111111222222 56677778765 3477788876432
Q ss_pred eeEEecc--CCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEEeC--Ce-eEEEEecCCCEEEEEEC
Q 008393 364 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 364 ~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~ 432 (567)
. .... +...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-.. .. ...+...++..++.|+.
T Consensus 371 ~--~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 R--EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred e--eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 2 1111 11111122222 34566667632 4588899887665432211 11 11112223344444443
Q ss_pred C--------CeEEEEECCCCeEEEE--ecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCC
Q 008393 433 E--------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 485 (567)
Q Consensus 433 d--------g~I~i~d~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~ 485 (567)
+ ..+.+||..+.+-... +...... .+++. -++++++.|+.+ .|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 2488999887643321 1111111 12222 256677776643 5777777653
|
|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0098 Score=66.80 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.4
Q ss_pred cCCCcccccC
Q 008393 33 NNRSMSLGKD 42 (567)
Q Consensus 33 ~~~~~~~~~~ 42 (567)
++.+|--++-
T Consensus 2039 ~~q~m~~~~q 2048 (2220)
T KOG3598|consen 2039 MNQNMGGMNQ 2048 (2220)
T ss_pred cccchhhhhc
Confidence 4555443333
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.59 Score=47.82 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=59.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEE-eCCCCC----CCceE-EEeecC----CCceEEEEEeCCCCeEEEEEcC-----
Q 008393 455 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGECV-HELSCN----GNKFHSCVFHPTYPSLLVIGCY----- 519 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d~I~iw-d~~~~~----~~~~i-~~~~~~----~~~i~~~~~sp~~~~l~~~~~d----- 519 (567)
.....|++.++| +++ +....|..| |..... ..+.+ ..+... ......++|.|||.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 456789999988 444 445555544 543211 11222 223221 3446788999999866655421
Q ss_pred --------------CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 520 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 520 --------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
+.|.-++..+++...+.........++|+++|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 456666666655443333334467899999998877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.1 Score=40.69 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=127.8
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 410 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~- 410 (567)
-..++-.+||...+++...+.|--.|..+ ++....-.+....-..|..-|++...|+-. ..-|.-.|-++.+..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEee
Confidence 45667788898888888888888888887 444444445556677888899988777322 22566677766554332
Q ss_pred E-----eCCeeEEEEecCCCEEEEEEC---------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 411 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 411 ~-----~~~~~~~~~~~~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
+ ........|.+.+...+++.. .+.|++|+.-. ...-+.||..|+|...++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 134566778888877777653 13455554432 2345678999999988877666
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCC
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~ 552 (567)
.|-..|..++ ..+.+..-.........+-.+|.+..-++....+.++.||-...... .+.+....-.++.....++
T Consensus 211 aiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 211 AIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred ceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777665 22222222222333445556777776677666678888887655433 3333333444444444443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.8 Score=42.16 Aligned_cols=221 Identities=11% Similarity=0.094 Sum_probs=108.7
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
...+.+|.|.....-+++|. +|. ||...+.+....... .....+.++.|..+ . .+++ +..+.|..- .+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~-~~~~-G~~g~i~~S-~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-E-GWIV-GQPSLLLHT-TDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-c-EEEe-CCCceEEEE-CCC
Confidence 45688899986555566664 443 444433333322221 12234677877643 2 3433 344443321 122
Q ss_pred CeeeEEE------eCCeeEEEEecCCCEEEEEECCCeEEEEEC--CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCe
Q 008393 405 GSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS 476 (567)
Q Consensus 405 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~--~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~ 476 (567)
++.-..+ .+....+.... .+.+++++..+.|..-+- ++.+.+. ..-...+.++.+.+++.+++++..+.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~--~~~~g~~~~i~~~~~g~~v~~g~~G~ 194 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALV--EDAAGVVRNLRRSPDGKYVAVSSRGN 194 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEEC-CCcceeeeccceEEEECCCCCCceeCc--CCCcceEEEEEECCCCeEEEEeCCce
Confidence 2211111 11111122111 123334444444433322 1222221 12245688999999998888777773
Q ss_pred -EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe-cc----ccCCeeEEEEecC
Q 008393 477 -VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL-TA----HEGLIAALAVSTE 550 (567)
Q Consensus 477 -I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~-~~----h~~~V~~l~~spd 550 (567)
.+.+|-. +..... ........++.+.+.++++.+++ +..|.+++=....+..... .. -...+.++.+.++
T Consensus 195 i~~s~~~g-g~tW~~--~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 195 FYSTWEPG-QTAWTP--HQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred EEEEcCCC-CCeEEE--eeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 3333321 111111 12234567888999999886555 4567665433444444321 11 1235788899888
Q ss_pred CCEEEEEECCCcEE
Q 008393 551 TGYVASASHDKFVK 564 (567)
Q Consensus 551 g~~l~s~s~Dg~I~ 564 (567)
+..++ ++.+|.|.
T Consensus 271 ~~~~~-~G~~G~v~ 283 (334)
T PRK13684 271 GEIWA-GGGNGTLL 283 (334)
T ss_pred CCEEE-EcCCCeEE
Confidence 77555 44566554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.73 Score=41.78 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE
Q 008393 340 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417 (567)
Q Consensus 340 ~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~ 417 (567)
++.++.+.+. ...|++||+.+ +..+....-....+..=-...-++.+..-.-.+|.-.++|.++.+++..+.-....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4455555544 34699999997 44333222111122211111224445545567889999999999988877655555
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEE----EecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceE
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRL----SLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~----~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i 491 (567)
-....++..++.+.....+..-|.++..... ++.+ .-..++.+.|- +|.+.|-.-.. .|...+..+|+....+
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 5555667778888888888888887754332 2222 11233445552 56666655555 6666666665321111
Q ss_pred ---------EEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 492 ---------HELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 492 ---------~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
..-..+.+-.+.+++.|+...++..+.
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 111123445778899998866665543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.9 Score=43.26 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=49.6
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeee---EEEe---CCee-EEEEecCCCEEEEEEC-----CCeEEEEECCCCeEE
Q 008393 385 DDLICSCDGD-----GEIRYWSINNGSCT---RVFK---GGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 447 (567)
Q Consensus 385 ~~li~s~~~d-----g~I~iwd~~~~~~~---~~~~---~~~~-~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~ 447 (567)
+.+++.|+.+ ..+..||+.+.+.. ..+. .... ..+..-++..++.++. ...+..||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566677754 35777787766531 1111 1111 1111223344444543 247889998876432
Q ss_pred E--EecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEeCCCC
Q 008393 448 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 485 (567)
Q Consensus 448 ~--~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iwd~~~~ 485 (567)
. .+.. .......+..-++++.+.|+.+ .+.+||+.+.
T Consensus 153 ~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 2221 1122223333456777777654 2567888754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.012 Score=59.29 Aligned_cols=137 Identities=13% Similarity=0.211 Sum_probs=99.9
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 333 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
....|-+.+.-++.++.+..|..||-.. ...... ..++....++|..+++.+++.+-..+.+.+||+.+......-.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3446777777799999999999999764 222222 2456667889988888888888889999999998654332222
Q ss_pred CCe---eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEE
Q 008393 413 GGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 413 ~~~---~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~ 472 (567)
++. .-+.|++....++.+...+.+.||+..+.+.+...-.|...+++++|.+.+..+..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 221 225688888888888889999999999887776666688999999998877554433
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.8 Score=40.64 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=113.3
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCC-------CCeeeeeecc-----cCccEEEEEECCCCC------------eEEE
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RLAT 346 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~-------~~~~~~~l~~-----h~~~V~~i~fsp~~~------------~l~s 346 (567)
+.|+|+|.+-+-++....+...+||.. ...++.++.. .....+.+.|+.... .++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 579999999888888888999999986 1123344432 234577788875322 3688
Q ss_pred EeCCCcEEEEEcCCCCc----eeEEec-cCCCcEE-EEEEcC--CCCeEEEEEeCCCcEEEEECCCCeee--EEEeCCe-
Q 008393 347 SSFDKTVRVWDADNPGY----SLRTFM-GHSASVM-SLDFHP--NKDDLICSCDGDGEIRYWSINNGSCT--RVFKGGT- 415 (567)
Q Consensus 347 ~s~dg~I~iwd~~~~~~----~~~~~~-~h~~~V~-~l~~~p--~~~~li~s~~~dg~I~iwd~~~~~~~--~~~~~~~- 415 (567)
+++||+|.-|...-... .+..+. ...+.|+ .+++.. .+..|+++--..++|.+||-.-.+.. ..|..+.
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 89999999998542111 112222 1224443 455543 35667767677899999986533221 1111110
Q ss_pred ---------------eEE---EEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcC------CCCEE
Q 008393 416 ---------------AQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGELL 469 (567)
Q Consensus 416 ---------------~~~---~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp------~g~~l 469 (567)
..+ .-.+....-+.+..-|.|.+||+... .+.++. +.-..-+.|+..| .|.+|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL 264 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGALL 264 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence 001 11222222233334578999998654 333342 2334456677655 46677
Q ss_pred EEEeCC-eEEEEeCCCC
Q 008393 470 ASVSED-SVRVWTVGSG 485 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~ 485 (567)
+.--.| +|..||..++
T Consensus 265 VGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSG 281 (336)
T ss_pred EeecCCceeEEecCCCC
Confidence 665556 9999999877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.8 Score=39.75 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=37.3
Q ss_pred CeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 300 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
+.|+.+...+.|.+|++. ..+...++..- +.|..+.++..|+||+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 455555667889999987 44556666654 77999999999999999744
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.4 Score=45.72 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=90.0
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee--EEeccCCCcEEEEEEcCCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~ 385 (567)
--.|+||+. +|..+..+.-....+..+.|+.+. .|++...+|+++||++-...... ..+......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 456888876 466666655444578899999765 67777899999999997422111 0111223345555555444
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeC------CeeEE-EEecCCCEEEEEECC--CeEEEEECCCC-eEEEEecCCCC
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKG------GTAQM-RFQPHLGRYLAAAAE--NVVSILDAETQ-ACRLSLQGHTK 455 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~~~~d--g~I~i~d~~~~-~~~~~~~~h~~ 455 (567)
++ .-..+|.|.+-+-......+.++. ...+. ++.+.....+...-+ -...++-.... .....+.....
T Consensus 140 -Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 22 333355554443222222222221 11111 122221111111111 00111111111 11112222235
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.+..+..||++.+|+--... .|.+-+.... +++.++.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccC
Confidence 67788999999999988877 8888777543 4444444
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=4.3 Score=41.56 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=89.3
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc--CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCC-
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS- 372 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~- 372 (567)
.-||+ +.++..+|.|.-.|.++++.+.....- ...+..-.+..+| .|+.++.++.++.+|..+ +..+-.+....
T Consensus 66 ~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~ 142 (370)
T COG1520 66 DGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDAST-GTLVWSRNVGGS 142 (370)
T ss_pred eeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCC-CcEEEEEecCCC
Confidence 33444 444467888888888888866543322 1233333333356 488888899888888865 55444444333
Q ss_pred CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee-E--EE--EecCCCEEEEEEC--CCeEEEEECCCCe
Q 008393 373 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQA 445 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~-~--~~--~~~~~~~l~~~~~--dg~I~i~d~~~~~ 445 (567)
..+..-.+..+ ..++.++.++.+...|..+++....+..... . .. .....+.++++.. ++.+.-+|.+++.
T Consensus 143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 11222222223 2444555789999999999988776544321 1 11 1123455666666 6678888998888
Q ss_pred EEEEe
Q 008393 446 CRLSL 450 (567)
Q Consensus 446 ~~~~~ 450 (567)
.....
T Consensus 221 ~~w~~ 225 (370)
T COG1520 221 LKWSQ 225 (370)
T ss_pred Eeeee
Confidence 77764
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.24 Score=55.34 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=92.3
Q ss_pred cEEEEEECCCCCeEEEE--eCCCcEEEEEcCCCCce----eE------EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 331 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~--s~dg~I~iwd~~~~~~~----~~------~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.|..+...+|++..++. +.+-.|..||+++-... .+ +.......+.++.|.|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35555556676654433 34457889998752111 11 11122345667888887665666788899999
Q ss_pred EEECCCCee-eE--EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC----CCCCeeEEEEcCCCCEEEE
Q 008393 399 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 399 iwd~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s 471 (567)
+..+..... +. .+....++++|+|.|..++++-..|++.-|...-.. ...+.+ ....|.+|+|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764332 12 234567899999999999999999999988765432 122221 1367999999988877776
Q ss_pred Ee
Q 008393 472 VS 473 (567)
Q Consensus 472 ~s 473 (567)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.7 Score=41.33 Aligned_cols=77 Identities=8% Similarity=0.018 Sum_probs=43.9
Q ss_pred EEEEecCCCCCeeEEEEcC-------CCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCCCeEEEE
Q 008393 446 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp-------~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~ 516 (567)
++..+..| ..+..+.|.. .|.+|++.-.. .|....+...........+. .....+..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 34445544 5566777764 34566666555 78888876443222223322 334478999999999877777
Q ss_pred EcCCeEE
Q 008393 517 GCYQSLE 523 (567)
Q Consensus 517 ~~dg~I~ 523 (567)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.02 E-value=4.5 Score=40.83 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=52.3
Q ss_pred CCCeEEEEeCC-------CcEEEEeCCCCeeeeeec--c-cCc---cEEEEEECCCCCeEEEEeCC-----CcEEEEEcC
Q 008393 298 DGKLLATGGHD-------KKAVLWHTDTLKSKTNLE--E-HSS---LITDVRFSPSMPRLATSSFD-----KTVRVWDAD 359 (567)
Q Consensus 298 dg~~lasg~~d-------g~I~vwd~~~~~~~~~l~--~-h~~---~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~ 359 (567)
++++++.|+.+ ..+.+||+.+.+-...-. . ... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566667653 357888887654332111 0 010 1222222 45566777653 247788887
Q ss_pred CCCceeEEecc------CCC-cEEEEEEcCCCCeEEEEEeCC-----------CcEEEEECCCCeee
Q 008393 360 NPGYSLRTFMG------HSA-SVMSLDFHPNKDDLICSCDGD-----------GEIRYWSINNGSCT 408 (567)
Q Consensus 360 ~~~~~~~~~~~------h~~-~V~~l~~~p~~~~li~s~~~d-----------g~I~iwd~~~~~~~ 408 (567)
+... ..+.. ... .-.+++.. ++.+++.|+.+ ..|.+||.++.+-.
T Consensus 110 t~~W--~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEW--TFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEE--EEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 6332 22211 111 11222332 34566666653 24778898876644
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.00 E-value=7.5 Score=43.27 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.6
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.-.|..|.++++|.+|+..|..| |.|-.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34688999999999999999877 5555554
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.035 Score=60.05 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=71.6
Q ss_pred eeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCC--CCeeeeeec-----ccCccEEEEEECC---CCCeEEEEeCC
Q 008393 282 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLE-----EHSSLITDVRFSP---SMPRLATSSFD 350 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~--~~~~~~~l~-----~h~~~V~~i~fsp---~~~~l~s~s~d 350 (567)
.+++-.+.|-.++|-. +...++ -.-|.+.|||++ .|+....+. .....+.-|.|+| +.-+++.+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4566778888888854 222222 233678889876 444333222 2233345555654 56688888889
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
+.|++..+++... ..+.+|...+..++|...|-.++..-+-||++..|-+
T Consensus 205 ~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 205 GEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred CceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 9999988875332 5566799888888887665544544444555544443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.9 Score=39.31 Aligned_cols=252 Identities=12% Similarity=0.035 Sum_probs=139.2
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEECC
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~fsp 339 (567)
+.+.++.|+++..+..++..+... +--.++..+ |++..++..|.-+.+.|+.+. .+...+......-..++.+
T Consensus 105 ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS- 180 (370)
T COG5276 105 SSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS- 180 (370)
T ss_pred CCceEEEeccCCCCcceeccccCC-ceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe-
Confidence 346678888887666666655542 333444444 778888886777778888653 3334444444444566665
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----C
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 414 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~ 414 (567)
|++-+.+..|+-+.|-|+.++..++..-.-. ...+.++..+++.. ++ + ..+.-+.+-|..+.+....+.. .
T Consensus 181 -Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~-v-vy~egvlivd~s~~ssp~~~gsyet~~ 256 (370)
T COG5276 181 -GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL-V-VYDEGVLIVDVSGPSSPTVFGSYETSN 256 (370)
T ss_pred -cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE-E-EcccceEEEecCCCCCceEeeccccCC
Confidence 6688888899999999998866544332222 23678887776632 33 2 2355677888877664444321 1
Q ss_pred eeEE-EEecCCCEEEEEECCCeEEEEECCCCeE---EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCce
Q 008393 415 TAQM-RFQPHLGRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 490 (567)
Q Consensus 415 ~~~~-~~~~~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~ 490 (567)
..++ .+.-.+++..++..+..+.+.|+.+... ...+......-..+..+ +.++..+..++..+.+.... ..
T Consensus 257 p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~---s~ 331 (370)
T COG5276 257 PVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPP---SM 331 (370)
T ss_pred cccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCCceEEEeCCCh---hh
Confidence 1111 2334455666666666666666654311 11111111122223322 44455554444455555332 11
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.....+....+.++..+-+.+.+.....++.+.||+.
T Consensus 332 m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 332 MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1112222223445555556667788888888888875
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.2 Score=47.50 Aligned_cols=177 Identities=7% Similarity=-0.039 Sum_probs=84.6
Q ss_pred CCCeEEEEeCCC-----cEEEEeCCCCeeee--eecccCccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCceeEEe
Q 008393 298 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 298 dg~~lasg~~dg-----~I~vwd~~~~~~~~--~l~~h~~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~ 368 (567)
++.++++||.++ .+..||..+.+... .+.........+. -++...+.|+.+ ..+..||..++.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 455667777543 46678877654332 2221111122222 356677777754 3578888765322 222
Q ss_pred ccCCCcEE--EEEEcCCCCeEEEEEeCCC---cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 369 MGHSASVM--SLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 369 ~~h~~~V~--~l~~~p~~~~li~s~~~dg---~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
..-..+.. +++.. ++.+++.|+.++ .+..||.++.+....-.- +....+...-++.+++.+ |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence 11111111 22222 355777777553 467888877655432111 111111112235555544 45778888
Q ss_pred CCCeEE--EEecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCC
Q 008393 442 ETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 484 (567)
Q Consensus 442 ~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~ 484 (567)
++.+-. ..+....... +++. -+|++.+.|+.+ .|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 775433 2222111122 2222 356677776642 355666544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=35.27 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.3
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|.++.|+|...+||.+..+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3469999999999999999999999999994
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=6.1 Score=40.68 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc--eEEEeec--CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 454 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~--~i~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
...+..+.|.+++.+++++..+.+ +|....+.... .+..... ....+..+.|.+++. +++++..|.+.... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CC
Confidence 456889999999998887755543 33333332111 2232222 224588888987776 66666777666654 45
Q ss_pred CcEEEe----ccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 530 NKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 530 ~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++.... ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 554322 233456889998777665554 568877655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.2 Score=48.01 Aligned_cols=109 Identities=12% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE--eCCCCeEEEEEcCCeEEEEECC---
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS--- 528 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~--sp~~~~l~~~~~dg~I~iwd~~--- 528 (567)
....-+.-+.-++..++-+.. .+.|||.+.+. .+.-..+ ...+.|..+.| .|++..+++.|....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344455555556655555555 89999998663 1112222 44677888877 4689999999999999998532
Q ss_pred --CC-------cEEEecccc-CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 --~~-------~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. +.+.+..|+ .+|.+..|.++|.+++.+|. .+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 11 122344555 68999999999977665543 455553
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.52 E-value=5.3 Score=39.34 Aligned_cols=266 Identities=12% Similarity=0.129 Sum_probs=118.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeec--cc---CccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~--~h---~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
...+.+|+|..+..-+|+|. .+.| +... -|+.-.... .. .....+|.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 45888999996666666664 4543 3232 222211111 11 223667777643 3344 44455 43444443
Q ss_pred CCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEEe---CCeeEEEEecCCCEEEEEECC
Q 008393 361 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 361 ~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~d 433 (567)
+.....+. .-.+....+....++ ..++. +..|.|+. ..+.++. ..... +.+..+...+++.+++++...
T Consensus 90 -G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 -GKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp -TSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred -CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 44433322 123344444444443 33323 33444332 2222222 22222 344556667776655555555
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC-CCC-CceEEEeecCCCceEEEEEeCCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSE-GECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~-~~~-~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
..+.-||.-...-...-......|.+|.|.+++.+.+.+ .+ .|++=+... ... .+.+..+......+..++|.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 556677765432222222345789999999998877755 55 777776211 100 01111122234458899999887
Q ss_pred CeEEEEEcCCeEEEEECCCCcEEEec----cccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 511 PSLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
. +.+++..|.| +.....++.-... .-...++.+.|..+.+-+| .+.||.|.-|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 6 4445555544 3445556544222 3345688888876544444 5678887655
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.32 E-value=2 Score=36.28 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=77.6
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEEcCCCC-------ceeEEeccCCCcEEEEEEcC----CCCeEEEEEeCCCcEEEEEC
Q 008393 334 DVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s~dg~I~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~p----~~~~li~s~~~dg~I~iwd~ 402 (567)
.-+|......|+.++.-|+|.|++..... ..+..+ .....|++|+-.+ ++..+|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566667789999999999999876422 122333 3556788876543 2345665665 678999999
Q ss_pred CCCeee--EEEeCCeeEEEEe---cCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 403 NNGSCT--RVFKGGTAQMRFQ---PHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 403 ~~~~~~--~~~~~~~~~~~~~---~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
....-+ +.+..++.++.+- .....++..+.+..|.-||.+..+..++..
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 887644 4456677776653 334567777778888888887777666544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.6 Score=44.83 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred CCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC-------eEEEEEeCCCcEEEEECCC-CeeeE-
Q 008393 340 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINN-GSCTR- 409 (567)
Q Consensus 340 ~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-------~li~s~~~dg~I~iwd~~~-~~~~~- 409 (567)
+..+|+ .|+....++-.|++. ++.+..+.-|... -+.|.|..+ .-+ .|-.+..|.-.|.+- +..+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444443 445556677778876 7777777766654 456666421 223 455566776667653 22222
Q ss_pred -EEeCCeeEEEE----ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 410 -VFKGGTAQMRF----QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 410 -~~~~~~~~~~~----~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
.++...+.-.| ....+++++++..|.|++||--..+....+.+-...|..|..+.+|++|++.+...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 22222222222 334689999999999999997666555566777788999999999999999999888888886
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.20 E-value=7.9 Score=40.00 Aligned_cols=222 Identities=10% Similarity=0.138 Sum_probs=120.1
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCce---eEEeccCCCcEEEEEEc---CC-CCeEEEEEeCCCcEEEEECCCC--e-----
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFH---PN-KDDLICSCDGDGEIRYWSINNG--S----- 406 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~---p~-~~~li~s~~~dg~I~iwd~~~~--~----- 406 (567)
...|++|+..|.++||+....+.. +..-..-..+|..|..- +. ....+ +.-.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998653321 12222345677777653 22 22233 3344667777776321 1
Q ss_pred ---eeEEE----eCCeeEEEEecC-----CCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 407 ---CTRVF----KGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 407 ---~~~~~----~~~~~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
....+ ......+++-+- ...+++-+.||.+.+|+-+.......+.+ ---...++|.+.-..|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 11111 122223333222 25677788899999999888765555554 122234678888888888888
Q ss_pred C-eEEEEeCCCC--------------------CCCceEEEeecCCCceEEEE---EeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 475 D-SVRVWTVGSG--------------------SEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 475 d-~I~iwd~~~~--------------------~~~~~i~~~~~~~~~i~~~~---~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+ .|..|....- +....-.++.. +..+..+. ++.....|++-+. ..+++.+.. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~-G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLFCLKDN-G 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEEEEcCC-C
Confidence 8 8888876321 11112222222 22333332 3333344444443 466666664 3
Q ss_pred cEEEeccccCCeeEEE-E----ecCC---CEEEEEECCCcEEEcC
Q 008393 531 KTMTLTAHEGLIAALA-V----STET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~-~----spdg---~~l~s~s~Dg~I~iWd 567 (567)
........+....|++ | ..++ ..++.+++++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4432222233222222 2 1122 2478888999998874
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=94.18 E-value=7.2 Score=41.38 Aligned_cols=149 Identities=6% Similarity=-0.075 Sum_probs=72.5
Q ss_pred CCeEEEEEeCC-----CcEEEEECCCCeeeEEEeC-----CeeE-EEEecCCCEEEEEECC-----CeEEEEECCCCeEE
Q 008393 384 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTAQ-MRFQPHLGRYLAAAAE-----NVVSILDAETQACR 447 (567)
Q Consensus 384 ~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~ 447 (567)
++.+++.|+.+ ..+.+||+.+.+....-.. .... ....-.+..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 35577677654 4688899988765443211 1111 1112233444455443 35778888776433
Q ss_pred EEec-----CCCCCeeEEEEcCCCCEEEEEeC-----CeEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEE
Q 008393 448 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 448 ~~~~-----~h~~~V~~l~~sp~g~~l~s~s~-----d~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~ 516 (567)
..-. ..... ..++. -++++++.++. +.|.+||+.+.. ...+..... ........+..-+++.++.|
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEEC
Confidence 2110 00111 12222 25666666653 258899987641 122211100 01111111223355666666
Q ss_pred EcC--------------CeEEEEECCCCcEEEe
Q 008393 517 GCY--------------QSLELWNMSENKTMTL 535 (567)
Q Consensus 517 ~~d--------------g~I~iwd~~~~~~~~~ 535 (567)
+.. +.+++||+.+.+...+
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 642 2588999988876544
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=94.17 E-value=7.2 Score=39.43 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEEEEECCCCcEEEeccccCCee-EEEEecCCCEEEEEECCC
Q 008393 521 SLELWNMSENKTMTLTAHEGLIA-ALAVSTETGYVASASHDK 561 (567)
Q Consensus 521 ~I~iwd~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~Dg 561 (567)
.+.+||..+.+...+........ ..+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 57889988776543332222211 223345778888888653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.09 E-value=4.1 Score=42.69 Aligned_cols=267 Identities=15% Similarity=0.071 Sum_probs=128.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
..+|..+.++-.|.+ .+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 467888888888854 4565555 5667777777666544333 556655554444 678888888 7887776411111
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE-EEeC--CeeE-EE-EecCCCEEEEEECCCeEEEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKG--GTAQ-MR-FQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~-~~~~--~~~~-~~-~~~~~~~l~~~~~dg~I~i~d 440 (567)
....-..+.|..+.-...|...| |++.|..+. ......... ..+. +.+. .. +....+.+-+++.++.+.+-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lWi--GTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELWI--GTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCCEEE--eecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 11112334555555555555443 554544332 333222211 1111 1111 11 222335566666666666544
Q ss_pred CCCCeEEEEecCCCCC-eeEEEEcC---CCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 441 AETQACRLSLQGHTKP-IDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~-V~~l~~sp---~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
.. ......+....+. +-.++..| +......-+.+.+.+-+-.++.....++.. .+..|+.+++..++ .+..+
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g-~lWlg 392 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRG-RLWLG 392 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCC-cEEEE
Confidence 32 1111111111111 11111111 000000001111222222222111112222 23445556666644 47778
Q ss_pred EcCCeEEEEECCC-CcEEEec--cccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 517 GCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 517 ~~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+..+.+..|+.++ +..+... ...++|.++.=.|+++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776777777776 3333222 2446788888888888 667888887653
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.03 E-value=8.2 Score=39.56 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=102.8
Q ss_pred CCCeEEEEe-CCCcEEEEEcCCCCc---eeEEecc---CC----CcEEEEEEcCCCCeEEEEE--eC----CCcEEEEEC
Q 008393 340 SMPRLATSS-FDKTVRVWDADNPGY---SLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 402 (567)
Q Consensus 340 ~~~~l~s~s-~dg~I~iwd~~~~~~---~~~~~~~---h~----~~V~~l~~~p~~~~li~s~--~~----dg~I~iwd~ 402 (567)
+.++|+..+ ..+.|+|.|+.+... ..+++.. +. .....+...|+|+-+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 345777776 678899999985322 2233321 10 1223344456665444 43 22 356888888
Q ss_pred CCCeeeEEEeCC------eeEEEEecCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 008393 403 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 455 (567)
Q Consensus 403 ~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~--------------------dg~I~i~d~~~~~~~~~~~~h~~- 455 (567)
++.+.....+.. ...+-+.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777666542 234667887777777542 35899999999999988875432
Q ss_pred -CeeEEEEcC--CCCEEEEEeC-C-eEEEEeCCCCCCC--ceEEEeecC-----------------CCceEEEEEeCCCC
Q 008393 456 -PIDSVCWDP--SGELLASVSE-D-SVRVWTVGSGSEG--ECVHELSCN-----------------GNKFHSCVFHPTYP 511 (567)
Q Consensus 456 -~V~~l~~sp--~g~~l~s~s~-d-~I~iwd~~~~~~~--~~i~~~~~~-----------------~~~i~~~~~sp~~~ 511 (567)
....|.|.. +..+-++++. . .|..|--...... +.+..+... ..-++.+.+|.|++
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 344566654 4444444433 3 5555443222111 112222111 23478899999999
Q ss_pred eEEEEEc-CCeEEEEECCCCcEEEec-----c---------------ccCCeeEEEEecCCCEEEEEE
Q 008393 512 SLLVIGC-YQSLELWNMSENKTMTLT-----A---------------HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 512 ~l~~~~~-dg~I~iwd~~~~~~~~~~-----~---------------h~~~V~~l~~spdg~~l~s~s 558 (567)
+|++.+. .|.|+.||+.....-.+. + -.+....|..|-||+.|....
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998876 589999999875422111 1 112346788899998876543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.87 E-value=4.6 Score=44.88 Aligned_cols=80 Identities=25% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC---------CCeee---eee--------cccCccEEEEEECCC---CC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSK---TNL--------EEHSSLITDVRFSPS---MP 342 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~---------~~~~~---~~l--------~~h~~~V~~i~fsp~---~~ 342 (567)
-.-.|..|.++++|++||..|..|.+.+.=-. .++.. +++ ..+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34578889999999999999887655443211 11111 111 134567999999996 57
Q ss_pred eEEEEeCCCcEEEEEcCCCCcee
Q 008393 343 RLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
.|++-..|+++|+||+.....+.
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCe
Confidence 99999999999999997644433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=16 Score=42.27 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=17.0
Q ss_pred ccccCCeeEEEEecCCCEEEEE
Q 008393 536 TAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 536 ~~h~~~V~~l~~spdg~~l~s~ 557 (567)
.+|-..+.++|.+|||..++.-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred ccccCCcceEEECCCCcEEEec
Confidence 4566788999999999876653
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=1 Score=45.60 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC--
Q 008393 453 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-- 528 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~-- 528 (567)
..++|.+|.|++|.+.||.--.+ .|.+++.-..+ ......+.+.....|...+|+.... ++.....| +.+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchh
Confidence 45799999999999999999888 99999884321 1122333444455688889987743 55555444 5555443
Q ss_pred CCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 529 ENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 529 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.........|...|+-..|.++.+.+.-++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 333345667888899999999887654443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.8 Score=37.70 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.7
Q ss_pred CEEEEEECCCeEEEEECCC--CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 425 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~--~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
+.++++.....|.+|++.. .+.+..|.. -+.|..+.++..|+||++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 5666667888999999883 355666664 3789999999999999987543
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=9.4 Score=39.16 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.2
Q ss_pred cEEEEECCCCeeeE
Q 008393 396 EIRYWSINNGSCTR 409 (567)
Q Consensus 396 ~I~iwd~~~~~~~~ 409 (567)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988776543
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=8.2 Score=39.60 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=20.3
Q ss_pred EEEEECCCCcEEEeccccCC-eeEEEEecCCCEEEEEECC
Q 008393 522 LELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHD 560 (567)
Q Consensus 522 I~iwd~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~D 560 (567)
+.+||..+.+...+..-..+ -...+..-++++++.||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 56889887765432211111 1112333467788888753
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=3.8 Score=43.58 Aligned_cols=168 Identities=7% Similarity=-0.065 Sum_probs=79.7
Q ss_pred CeEEEEEeCCC-----cEEEEECCCCeeeEEEe--CCee-EEEEecCCCEEEEEECC--CeEEEEECCCCeEEEEecCCC
Q 008393 385 DDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGTA-QMRFQPHLGRYLAAAAE--NVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 385 ~~li~s~~~dg-----~I~iwd~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~~h~ 454 (567)
+.+++.|+.++ .+..||..+++....-. .... .....-++..+++|+.+ ..+..||..+.+-...-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 45666776543 57778888766443221 1111 11122333444555543 468889887654322111111
Q ss_pred CCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 455 KPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.........-+|++.+.|+.+ .+..||.++. ....+..+...... ..+..-++. |++.| |.+.+||..++
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~--~~~~~~~~~-IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYK--SCALVFGRR-LFLVG--RNAEFYCESSN 425 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcccc--ceEEEECCE-EEEEC--CceEEecCCCC
Confidence 111111122367777777643 4778887653 11111111111111 122233444 44444 45788999887
Q ss_pred cEEEeccc---cCCeeEEEEecCCCEEEEEECC
Q 008393 531 KTMTLTAH---EGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 531 ~~~~~~~h---~~~V~~l~~spdg~~l~s~s~D 560 (567)
+...+... .... +++ .-++++.+.||.+
T Consensus 426 ~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 426 TWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred cEeEcCCCCCCcccc-EEE-EECCEEEEECCcC
Confidence 76543321 1122 222 2367788888765
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.40 E-value=2 Score=46.51 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=79.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEEC--CCCCeEEEEeCCCcEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKTVRV 355 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fs--p~~~~l~s~s~dg~I~i 355 (567)
...++...-....-+.-|.-++..++-.....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334444444555556666656665665566789999999887554433 457789999995 68889999999999999
Q ss_pred EEcC-----CCC---ceeEE--eccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 356 WDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 356 wd~~-----~~~---~~~~~--~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
|.-. +.. ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 8542 111 12222 22344 6789999999875 33 232 5678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=10 Score=38.71 Aligned_cols=187 Identities=10% Similarity=-0.009 Sum_probs=98.6
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee-EE--
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QM-- 418 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~-~~-- 418 (567)
.++.+..+|.|.-.|.++........... ...+.+-.+..+|. ++.++.++.++.+|.++++.+..+..... ..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 56666788888888887733221111111 12233333333554 44788899999999999998888776551 11
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC---CeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceEE
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i~ 492 (567)
........++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|..++...-...
T Consensus 148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 1222335555555789999999999988777543221 11111111233 3334444 4 56666665552211110
Q ss_pred E-eecCCC------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 493 E-LSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 493 ~-~~~~~~------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
. ...... .+..-.+.-++ .++.++.++.+...|..+++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 0 000000 01100111122 2466677778888888888876
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.092 Score=56.98 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE-----------ECCCCCeEEEEeCCCcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~-----------fsp~~~~l~s~s~dg~I~iwd 357 (567)
.|.-+-|-++.-++..+-.++.|++..+++... ..+.+|...+..++ .+|||+.|+.++.||.++.|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444555667788888889999887765433 45556877766655 489999999999999999887
Q ss_pred cCCCC----ceeEEeccCC-CcEEEEEEcCCC---------CeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 358 ADNPG----YSLRTFMGHS-ASVMSLDFHPNK---------DDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 358 ~~~~~----~~~~~~~~h~-~~V~~l~~~p~~---------~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
+.-.+ .++...+.|. .+-.|.-|+... ..+|-+...+..+++|.....+|+.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll 329 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL 329 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh
Confidence 65322 2344555565 222222233221 1233344456789999988877773
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.0075 Score=60.81 Aligned_cols=140 Identities=20% Similarity=0.314 Sum_probs=94.9
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~ 494 (567)
...|.+.+..+++++.+..+..||-...... ... ..+....++|+.+|..++...+. .+.+||+.+....+ +..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~- 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LES- 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhc-
Confidence 3456666777888888888888886544322 221 23455678999888866665544 89999997642111 111
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-ccCCeeEEEEecCCCEEEEEECCCc
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.+ ...-.-+.|++.+..++.+...|.+.||+..+.+.....+ |...+++++|.+.+ +.+.++.|..
T Consensus 115 gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 115 GG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred cC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 11 1111115789999999999889999999999887775555 99999999998876 4555665543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.3 Score=36.44 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCCcEEEEEcCCCCceeEEeccCCCc
Q 008393 298 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMGHSAS 374 (567)
Q Consensus 298 dg~~lasg~~--dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~h~~~ 374 (567)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++.. .-.+|...++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 3456665553 457999999999887665422111111111111233332 23477788888876 33343333 2334
Q ss_pred EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----C-C---eeEEEEecCCCEEEE-EECCCeEEEEECCCCe
Q 008393 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G-G---TAQMRFQPHLGRYLA-AAAENVVSILDAETQA 445 (567)
Q Consensus 375 V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~-~---~~~~~~~~~~~~l~~-~~~dg~I~i~d~~~~~ 445 (567)
=+.++. ++..++ .++...+++.-|.++-....... + + .+.+.|. .+.+++ .-....|...|..+|+
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence 455544 455666 44445567777766544332221 1 1 1111221 133333 3335566666777776
Q ss_pred EEEEec------------CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 446 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 446 ~~~~~~------------~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.+..+. .|..-.+.|++.|++..|+..+..
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 655442 244567889999988555554443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.04 E-value=8.5 Score=38.46 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=52.3
Q ss_pred CCCeEEEEeCC-----CcEEEEeCCCCeee---eeec---ccCccEEEEEECCCCCeEEEEeC-----CCcEEEEEcCCC
Q 008393 298 DGKLLATGGHD-----KKAVLWHTDTLKSK---TNLE---EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~~d-----g~I~vwd~~~~~~~---~~l~---~h~~~V~~i~fsp~~~~l~s~s~-----dg~I~iwd~~~~ 361 (567)
++.+++.|+.+ ..+..||+.+.+.. ..+. ...... +++. -++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56677777754 35667777665431 1221 111111 1222 24556666664 235788888764
Q ss_pred CceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCC----cEEEEECCCCeee
Q 008393 362 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCT 408 (567)
Q Consensus 362 ~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg----~I~iwd~~~~~~~ 408 (567)
..... .+... ......+..- ++.+++.|+.++ .+.+||+.+.+..
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 43221 11111 1111111122 245776777654 3568888877654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.84 E-value=3.6 Score=34.77 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCe--------EEEEecCCCCCeeEEEEcC-----CCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 423 HLGRYLAAAAENVVSILDAETQA--------CRLSLQGHTKPIDSVCWDP-----SGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~--------~~~~~~~h~~~V~~l~~sp-----~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
....|++++..+.|.|++..... .+..+. -...|++|+-.+ +...|+.|+...|..||+..... .
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-~ 86 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-L 86 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-h
Confidence 34456666666666666654321 122222 345677775433 45688888888999999976532 1
Q ss_pred eEEEeecCCCceEEEEEe---CCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 490 CVHELSCNGNKFHSCVFH---PTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~s---p~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..++ -...+.++.+- ....-++..+.+-.|.-||....+.+
T Consensus 87 Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 87 FYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 1112 23556666553 22234666666678888887766654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.86 Score=42.75 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=47.9
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEEE--------ec-------cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTMT--------LT-------AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--------~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+..++.+|++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 456678899999999999999999987651 11 3456788999998887777665 57778775
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.5 Score=50.67 Aligned_cols=226 Identities=11% Similarity=0.046 Sum_probs=105.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc-cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~-~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
....++|++.-.++|.|...|.|++|-...-+.......-.. .+..+.|-.....+.....+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 345789999999999999999999997654433332221111 122222222222333444455566666543211
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEE-EEecCCCEEEEEECCCeEEEEECC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
..+...+++....+--. + +-+ ..+.+++||..-....... ....... ...+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~~~-~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPPPD-W-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCCcc-h-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 11223334333322211 2 345 7888888886533221110 0000000 000000000000000000000000
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.-. ..+..+..++.+..+......+..+....+-+|+..... ..+.+... ......++..++++..||.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYLPN-----GQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhcccc-----cccCccCCceEEEEEecCCE
Confidence 000 122234455666665555555555555556666654321 11111111 11227789999999999999
Q ss_pred EEEECCCCcE
Q 008393 523 ELWNMSENKT 532 (567)
Q Consensus 523 ~iwd~~~~~~ 532 (567)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999998753
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.59 Score=30.80 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCC---CeEEEEeCCCcEEEEeCCC
Q 008393 288 SKVICCHFSSDG---KLLATGGHDKKAVLWHTDT 318 (567)
Q Consensus 288 ~~V~~l~~s~dg---~~lasg~~dg~I~vwd~~~ 318 (567)
+.|.+|+|+|+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 5899998899999999984
|
It contains a characteristic DLL sequence motif. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=92.36 E-value=6 Score=42.92 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee--eec-ccCccEEEEEECC------CCCeEEEEeC-C---CcE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLE-EHSSLITDVRFSP------SMPRLATSSF-D---KTV 353 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~--~l~-~h~~~V~~i~fsp------~~~~l~s~s~-d---g~I 353 (567)
.+.|..+.|..+++.+++.-..|.|.+||...+.... .+. .+...|.-=+|-+ ...++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999993322221 222 1221111112222 2335554444 2 246
Q ss_pred EEEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-------eeEEEEecC
Q 008393 354 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 423 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~~ 423 (567)
+++.+......+..+. .+........|+-..+.+..- .+++|.+|++...+..+.+.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7777722222222222 222223333333333334322 6889999999888776665432 234455554
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 424 LGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
...-+.-+.++.|++.|+.-...+..+.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4555556678899999987665554444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.20 E-value=3.4 Score=42.60 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=86.4
Q ss_pred cCCCEEEE-EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC--------CEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 422 PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------ELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 422 ~~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g--------~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
.+...++. +.....++-.|++.|+.+..+..|... -+.|.|+. ..|+..+...|.-.|.+-......+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 33344333 333568888899999999998887665 46777753 24554444477777766433212222
Q ss_pred Eeec--CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECC
Q 008393 493 ELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 493 ~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
..+. ....+.+.. .....+|++++..|.|++||--..... .+.+....|..+..+.+|++|++.+..
T Consensus 555 esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 2211 122233322 334457999999999999996544333 667788889999999999988766654
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.4 Score=40.19 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=72.4
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCC-CceEEE--eecCCCceEEEEEeCC
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVHE--LSCNGNKFHSCVFHPT 509 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~-~~~i~~--~~~~~~~i~~~~~sp~ 509 (567)
.+||+.+++.............+-.+.+||++|.+|+.. .+++++...... ...... .-.......+...-+|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 467777665432222122223334577899999998853 588888754111 111111 1123445556677789
Q ss_pred CCeEEEEEcCC-eEEEEECCC--CcEEEe--cc------ccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 510 YPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 510 ~~~l~~~~~dg-~I~iwd~~~--~~~~~~--~~------h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
|+.|++||... +..+|.-.. .....+ .. ....---+...|+|++++.+..+..|.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 99999998876 566776532 112211 11 111222455679999999988776554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.01 E-value=8.4 Score=41.84 Aligned_cols=175 Identities=11% Similarity=0.216 Sum_probs=88.9
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE------EeCCeeEEEEecCC
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKGGTAQMRFQPHL 424 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~------~~~~~~~~~~~~~~ 424 (567)
-.|+||++. +..+..+.-..+.+..+.|+.+ ..|| ....+|.+++|++-....... ....+....+..
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~-eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-- 137 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDD-EELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-- 137 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCC-ceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec--
Confidence 348888886 4444443333447889999977 4466 567899999999864332221 111122222222
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEc--CCC-C--EEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSG-E--LLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~s--p~g-~--~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
+-+++-..+|.+.+..-.....+.++.. ......+.||. +++ . .++-...- ...++-..... .....+...
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSWP 215 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCCC
Confidence 3344444455554443333322333332 11111112232 221 1 11111100 11222221110 112223333
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
...+..|.++|+.++|+.-...|.|.+-+....+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 466888899999999999999999999888766544
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.84 E-value=13 Score=37.63 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCCCeEEEEeCC-----------CcEEEEeCCCCeeeeeecccCccEEEE-EE-CCCCCeEEEEeCC
Q 008393 297 SDGKLLATGGHD-----------KKAVLWHTDTLKSKTNLEEHSSLITDV-RF-SPSMPRLATSSFD 350 (567)
Q Consensus 297 ~dg~~lasg~~d-----------g~I~vwd~~~~~~~~~l~~h~~~V~~i-~f-sp~~~~l~s~s~d 350 (567)
-++++.+.|+.+ ..+..||..+.+-.............. +. .-++++.+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 357777888753 247778877655433211111111111 11 2367777777764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=91.78 E-value=20 Score=38.04 Aligned_cols=171 Identities=8% Similarity=0.007 Sum_probs=81.9
Q ss_pred CeEEEEEeCC-------CcEEEEECCCCeeeEEEe-C--Ce---eEEE-EecCCCEEEEEECC-----CeEEEEECCCCe
Q 008393 385 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--GT---AQMR-FQPHLGRYLAAAAE-----NVVSILDAETQA 445 (567)
Q Consensus 385 ~~li~s~~~d-------g~I~iwd~~~~~~~~~~~-~--~~---~~~~-~~~~~~~l~~~~~d-----g~I~i~d~~~~~ 445 (567)
+.+++.|+.+ ..+.+||+.+.+....-. + +. ...+ ..-.+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566667643 347788988766443211 0 00 1111 12233344444443 468899998864
Q ss_pred EEEEecC----CCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEE---eecCCCceEEEEEeCCCCe
Q 008393 446 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHE---LSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 446 ~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~---~~~~~~~i~~~~~sp~~~~ 512 (567)
-...-.. ....-.+++. -++++++.|+.+ .+..||+.+.. ...+.. ....... ..++ .-+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~-~~~~-~~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGG-AGLE-VVQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCC-cEEE-EECCcE
Confidence 4321111 1111122222 355666666643 36778876531 111110 0000111 1122 235666
Q ss_pred EEEEEcC----CeEEEEECCCCcEEEeccc-----cCCeeEEEEecCCCEEEEEECC
Q 008393 513 LLVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 513 l~~~~~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spdg~~l~s~s~D 560 (567)
+++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 6666655 4699999998876654322 1111222 23356777777753
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=91.68 E-value=23 Score=38.57 Aligned_cols=195 Identities=12% Similarity=0.161 Sum_probs=99.6
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCC--CCeEEEEEeCCCc-EEEEECCCC------
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN--KDDLICSCDGDGE-IRYWSINNG------ 405 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~--~~~li~s~~~dg~-I~iwd~~~~------ 405 (567)
.++|+.+.+-.|=....|.-|=+.-..+.+..+. .....|.||..... +..+++.|-.++. -++--+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5566666665555444555554443233333222 23455666665432 2334445533332 333333222
Q ss_pred ---------eeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCC--eEEEEecC-CCCCeeEEEEcC------CCC
Q 008393 406 ---------SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQG-HTKPIDSVCWDP------SGE 467 (567)
Q Consensus 406 ---------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~-h~~~V~~l~~sp------~g~ 467 (567)
+....++..+..+.+..++..+++...+|.|.+||...+ +.+..+.. +...+.-=+|-+ ...
T Consensus 114 ~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~ 193 (670)
T PF10395_consen 114 GTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKD 193 (670)
T ss_pred cccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCc
Confidence 112234566777889999999999999999999999332 22112221 222111112222 123
Q ss_pred EEEEEeC---C--eEEEEeCCCCCCCceEEEee---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 468 LLASVSE---D--SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 468 ~l~s~s~---d--~I~iwd~~~~~~~~~i~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
++++.+. + ..+++.+.. ....+.++. .+......+.|......|+.- .++.|.+|++...+..
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~--~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSN--ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEecc--CCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 4443333 2 688888821 112333332 333334444554444445544 6779999999877654
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=32 Score=40.06 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=15.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.|-..+.++|.+|||..+++-..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCc
Confidence 345566778888888766654443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.62 E-value=2 Score=49.19 Aligned_cols=73 Identities=10% Similarity=0.197 Sum_probs=49.0
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEE--EECCCC---c------------------EEEec-cccCCeeEEEEec
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL--WNMSEN---K------------------TMTLT-AHEGLIAALAVST 549 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~---~------------------~~~~~-~h~~~V~~l~~sp 549 (567)
+...+..|.++....+|+ |+.+|.||.|+= |....+ + ...+. .+..+|..+++..
T Consensus 174 i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 344466788888777777 555666664432 222221 0 11233 5677999999988
Q ss_pred CCCEEEEEECCCcEEEcC
Q 008393 550 ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iWd 567 (567)
....+.+-++.|+|.+||
T Consensus 253 SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred ccceeeeeccCceEEEEE
Confidence 888899999999999996
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.6 Score=40.92 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=46.1
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEe-------c-------CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSL-------Q-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~-------~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
+.+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+.+..+.|+..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 334455667777777777777777776654332 1 24467888888888988888777777888875
Q ss_pred C
Q 008393 484 S 484 (567)
Q Consensus 484 ~ 484 (567)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.10 E-value=2.8 Score=43.15 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=41.0
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCC
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 373 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~ 373 (567)
...+......+.+|..+|++++.++...=|.|.++|+.+ +..++.++|..+
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRd 350 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD 350 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCcc
Confidence 344555666789999999999888888889999999998 777777777654
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.05 E-value=6.8 Score=42.96 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=68.8
Q ss_pred eeEEEEc--CCCCEEEEEeCC-eEEEEeCCCC-----------C------CCceEEEeecCCCceEEEEEe--CCCCeEE
Q 008393 457 IDSVCWD--PSGELLASVSED-SVRVWTVGSG-----------S------EGECVHELSCNGNKFHSCVFH--PTYPSLL 514 (567)
Q Consensus 457 V~~l~~s--p~g~~l~s~s~d-~I~iwd~~~~-----------~------~~~~i~~~~~~~~~i~~~~~s--p~~~~l~ 514 (567)
|+.|... -+..+|+.|.+| .|.+|.+++- . ..++...+. .+...++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 4444433 355677788887 9999976321 0 011222222 24468899998 7777777
Q ss_pred EEEcCCeEEEEECCC--CcEEE--eccccCCeeEEEEecCC---C---EEEEEECCCcEEEcC
Q 008393 515 VIGCYQSLELWNMSE--NKTMT--LTAHEGLIAALAVSTET---G---YVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~--~~~~~--~~~h~~~V~~l~~spdg---~---~l~s~s~Dg~I~iWd 567 (567)
+++....|.||-+.. .+... -..|...|-+|+|-++. . +|++++-.|.+.+|+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 777777777665443 22221 22466779999996644 2 788888899988874
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=16 Score=38.84 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCc---EEEEEEcCC
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPN 383 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~~p~ 383 (567)
..+.+.++|. +|..+..+.........+.+.++|.+++... ..++.+|+.. +.+..+.-.... =..+.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G--~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG--KVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC--CEEEeeecCCcccccccccEECCC
Confidence 3455556664 3455554443222222266778888777665 6688888863 343333322211 245677888
Q ss_pred CCeEEEEEe-------C-----CCcEEEEECCCCeeeEEEe------------------------------CCeeEEEEe
Q 008393 384 KDDLICSCD-------G-----DGEIRYWSINNGSCTRVFK------------------------------GGTAQMRFQ 421 (567)
Q Consensus 384 ~~~li~s~~-------~-----dg~I~iwd~~~~~~~~~~~------------------------------~~~~~~~~~ 421 (567)
|+.|+++.. . .-.|..+| .+|+.+..+. .|...+.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 876665541 0 12355556 6666554421 146778899
Q ss_pred cCCCEEEEEECC-CeEEEEECCCCeEEEEecCCC
Q 008393 422 PHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 422 ~~~~~l~~~~~d-g~I~i~d~~~~~~~~~~~~h~ 454 (567)
+..+.+++.+.. ..|..+|.++++....+-.+.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 977888888885 499999999999988887654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.3 Score=47.92 Aligned_cols=121 Identities=13% Similarity=0.061 Sum_probs=73.3
Q ss_pred CeEEEEECCCCeEE-----EEecCC------CCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 434 NVVSILDAETQACR-----LSLQGH------TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 434 g~I~i~d~~~~~~~-----~~~~~h------~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
-.|+.||+++.... .-|..| .....++.|.|.-. ..+.+..| .|++..+.-.. ..+.. -.....
T Consensus 124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~--~~v~s-~p~t~~ 200 (1405)
T KOG3630|consen 124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA--QNVTS-FPVTNS 200 (1405)
T ss_pred ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh--hhhcc-cCcccc
Confidence 37788888764211 111111 23355777887532 23444555 77777664221 11112 123456
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec---c-ccCCeeEEEEecCCCEEEEE
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---A-HEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~---~-h~~~V~~l~~spdg~~l~s~ 557 (567)
.++++|+|.|+.+++|-..|++.-|...-.....+. . ....|.+|+|-....+|++-
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 789999999999999999999988876544322221 1 14679999998777776653
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=4.5 Score=41.91 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=14.6
Q ss_pred eeEEEEcCCC---CEEEEEeCC-eEEEEeCCC
Q 008393 457 IDSVCWDPSG---ELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 457 V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~ 484 (567)
+..++|+|+. ..|..-+.| .||+||+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 4455666643 233334444 666666643
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.49 E-value=22 Score=40.29 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCceeEEecc--CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCC
Q 008393 350 DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHL 424 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~ 424 (567)
+|.++.|++-..+..+..+.. -.+.| .+.+|..+++++ +-...+++||+..++.++..+... ........+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~La--gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~ 986 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLA--GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG 986 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEE--ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc
Confidence 455777776655554443332 22333 344555565553 345689999988777665433221 112233334
Q ss_pred CEEEEEECC
Q 008393 425 GRYLAAAAE 433 (567)
Q Consensus 425 ~~l~~~~~d 433 (567)
.+++++...
T Consensus 987 ~RI~VgD~q 995 (1205)
T KOG1898|consen 987 ARIVVGDIQ 995 (1205)
T ss_pred eEEEEeecc
Confidence 566666553
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.44 E-value=21 Score=35.82 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=36.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--------e-------EEEEeCCCCC----CCceEEEeec-----CCCceEEEEEeCC
Q 008393 454 TKPIDSVCWDPSGELLASVSED--------S-------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPT 509 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d--------~-------I~iwd~~~~~----~~~~i~~~~~-----~~~~i~~~~~sp~ 509 (567)
.....+|+++|+|+.|+++.+. . ++++.+.... .......+.. ....+..+.+-++
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d 225 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD 225 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC
Confidence 3457788888888855554321 1 4555443322 1122333332 4567888999999
Q ss_pred CCeEEE
Q 008393 510 YPSLLV 515 (567)
Q Consensus 510 ~~~l~~ 515 (567)
+++|+.
T Consensus 226 ~~lLvL 231 (326)
T PF13449_consen 226 GRLLVL 231 (326)
T ss_pred CcEEEE
Confidence 985554
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=90.03 E-value=30 Score=37.06 Aligned_cols=243 Identities=12% Similarity=0.121 Sum_probs=116.9
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCee--eeeeccc-CccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCC-CceeEEecc
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEH-SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNP-GYSLRTFMG 370 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~--~~~l~~h-~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~ 370 (567)
..++..++.+..+|.+....+..... ....-+. .....++.+..++ .+|+.|+.-|.=.++.+... -..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 45677888999999998887764331 1122122 4455666666554 47788877554444444321 22333333
Q ss_pred CCCcEEEEEEcCC---CC-------eEEEEEe--CCCcEEEEECCCCeeeE--E---Ee-CCeeEEEEecC----CCEEE
Q 008393 371 HSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSCTR--V---FK-GGTAQMRFQPH----LGRYL 428 (567)
Q Consensus 371 h~~~V~~l~~~p~---~~-------~li~s~~--~dg~I~iwd~~~~~~~~--~---~~-~~~~~~~~~~~----~~~l~ 428 (567)
.-++|.++++... +. .++++++ .+|.+++..- |-... . .. .++..+-..+. ..+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4578888888532 12 4554443 4677887742 22222 1 11 11222221111 23444
Q ss_pred EEECCCeEEEEECC---CCeEEEEec--C---CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeec-CCC
Q 008393 429 AAAAENVVSILDAE---TQACRLSLQ--G---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGN 499 (567)
Q Consensus 429 ~~~~dg~I~i~d~~---~~~~~~~~~--~---h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~-~~~ 499 (567)
.+.. ..-.++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... +....... .+.
T Consensus 376 ~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~ 449 (504)
T PF10433_consen 376 LSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGS 449 (504)
T ss_dssp EEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS-
T ss_pred EEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCC
Confidence 4444 333444442 333332221 1 11223322332 56677777778889987654 34433322 333
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-----cccCCeeEEEEec
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 549 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 549 (567)
.|.++++ ++.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 450 ~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 450 IIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp --SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred eEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3444444 3456888888889999988777654 111 2567888888766
|
... |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.61 E-value=32 Score=36.81 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=107.6
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEeccC-CCcEEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeEEEe-
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 412 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~--dg~I~iwd~~~~~~~~~~~- 412 (567)
..++..++.+..+|.+....+...+. .....-+. .....++.+..++..+++.|+. |+.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888876332 12222222 4556677877665345556665 5556666654455555555
Q ss_pred -CCeeEEEEecC----CC------EEEEEEC---CCeEEEEECCCCeE--EEEecCC--CCCeeEEEEcC-CCCEEEEEe
Q 008393 413 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 473 (567)
Q Consensus 413 -~~~~~~~~~~~----~~------~l~~~~~---dg~I~i~d~~~~~~--~~~~~~h--~~~V~~l~~sp-~g~~l~s~s 473 (567)
+++..+++... .. .+++++. +|.++++.-.-+-. ......- -..++.+.... ++.+|+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 36666665421 22 6677665 57887774322211 1111111 22344444322 256888887
Q ss_pred CCeEEEEeCCCCCCCceEEEe-----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe--ccccCCeeEEE
Q 008393 474 EDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA 546 (567)
Q Consensus 474 ~d~I~iwd~~~~~~~~~i~~~-----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~ 546 (567)
.+.-+++.+..+.....+..+ ......+.+..+. +..++=.. ...|++.+....+.... ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 775556655311111222221 1112223222222 33333333 34688888877766522 22344555555
Q ss_pred EecCCCEEEEEECCCcEEEc
Q 008393 547 VSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg~I~iW 566 (567)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556666543
|
... |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.7 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=23.6
Q ss_pred CcEEEEEEcCCCC--eEEEEEeCCCcEEEEECCC
Q 008393 373 ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 373 ~~V~~l~~~p~~~--~li~s~~~dg~I~iwd~~~ 404 (567)
+.|.++.|+|... .|++..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578888887544 5776766778888888885
|
It contains a characteristic DLL sequence motif. |
| >PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.11 Score=49.98 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCC
Q 008393 47 SVGDVVSNVGSPLP 60 (567)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (567)
...+++|...||+.
T Consensus 284 ~~e~~~et~ksp~~ 297 (468)
T PF11498_consen 284 FTEPVVETNKSPSE 297 (468)
T ss_dssp --------------
T ss_pred hcCCccccccCccc
Confidence 44556666777775
|
elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.06 E-value=3.1 Score=47.81 Aligned_cols=152 Identities=11% Similarity=0.245 Sum_probs=93.8
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEE--------EEecCCCEEEEEECCCeEEEEECC--
Q 008393 376 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQM--------RFQPHLGRYLAAAAENVVSILDAE-- 442 (567)
Q Consensus 376 ~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~--------~~~~~~~~l~~~~~dg~I~i~d~~-- 442 (567)
..+-+.|.=.+..+| .|+.+.+|+.+++.....+.+ .+..+ .|.+.-.++++.+..-.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 344444443333334 488999999999665555543 22222 255555677777777666666432
Q ss_pred --CCeE-----EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEE--EEeCCCC---C--CCc------------eEEEee-
Q 008393 443 --TQAC-----RLSLQGHTKPIDSVCWDPSGELLASVSEDSVR--VWTVGSG---S--EGE------------CVHELS- 495 (567)
Q Consensus 443 --~~~~-----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~--iwd~~~~---~--~~~------------~i~~~~- 495 (567)
++.. ..++......|.||....+|+++++|-+|.|+ +|....+ + ... .+..+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 2111 12222335678899988899999888887432 2222221 0 000 011222
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
.+..+|..+.+...-..+++-+..++|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999999999999999999999999986
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=88.97 E-value=13 Score=38.71 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 499 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..|..++..+..+.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3477778888888899999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation [] | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.19 Score=45.65 Aligned_cols=10 Identities=60% Similarity=0.521 Sum_probs=7.6
Q ss_pred HHHHHHHHHH
Q 008393 80 AQMHQQQQQQ 89 (567)
Q Consensus 80 ~q~~qqqqqq 89 (567)
+|+|||+|||
T Consensus 4 ~EQyQqHQqQ 13 (230)
T PF06752_consen 4 AEQYQQHQQQ 13 (230)
T ss_pred HHHHHHHHHH
Confidence 5788887777
|
This family contains several conserved motifs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.67 E-value=5.2 Score=43.85 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCCeEEEEeCCCcEEEEeCCC-------C-------------eeeeeecccCccEEEEEEC--CCCCeEEEEeCCCcEEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLATSSFDKTVRV 355 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~-------~-------------~~~~~l~~h~~~V~~i~fs--p~~~~l~s~s~dg~I~i 355 (567)
+...|+.+..||.|.+|.+++ . ++...+. ....++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556899999999999996631 1 0112222 34478999998 77888999988888888
Q ss_pred EEcCCC--CceeEEeccCCCcEEEEEEcCCC-----CeEEEEEeCCCcEEEEEC
Q 008393 356 WDADNP--GYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 356 wd~~~~--~~~~~~~~~h~~~V~~l~~~p~~-----~~li~s~~~dg~I~iwd~ 402 (567)
|-+... ......-..|...|.+|+|.++. ...+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 866541 11111112366779999997654 126667888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=88.24 E-value=28 Score=34.40 Aligned_cols=229 Identities=13% Similarity=0.023 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCC--CeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCc-----------
Q 008393 298 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY----------- 363 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~--~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~----------- 363 (567)
++++|+.|+.+|...+. +.. .+....+ +...|+++...+..+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999988866655 543 2333333 456799999988877666555 344599999843110
Q ss_pred ---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--e--eeEEE---e---C-CeeEEEEecC--CCEE
Q 008393 364 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S--CTRVF---K---G-GTAQMRFQPH--LGRY 427 (567)
Q Consensus 364 ---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~--~~~~~---~---~-~~~~~~~~~~--~~~l 427 (567)
......+|........+......+++.+.....|.++.+... + ..+.+ . . ....+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344434444444222223334444566776644332 1 12211 0 1 1112222222 4567
Q ss_pred EEEECCCeEEEEECCC--CeEE-----EEecCCC-CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCC
Q 008393 428 LAAAAENVVSILDAET--QACR-----LSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~--~~~~-----~~~~~h~-~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
++|+..+...++++.. .... ....... .++ ++..-+++.+|+ +-++...+.|...... .....+.- ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~w-~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILHW-EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEEc-CC
Confidence 7776653344444422 1000 0011111 233 333334554444 4555444445442111 11112221 23
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 536 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~ 536 (567)
...++++. ..+|++.. +..|.++++.+++.+...
T Consensus 245 ~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 245 MPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 34555665 35666665 456999999999876433
|
Unpublished observations. |
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.42 Score=53.41 Aligned_cols=8 Identities=0% Similarity=0.036 Sum_probs=5.2
Q ss_pred hhhhhhhh
Q 008393 24 ESRRFRML 31 (567)
Q Consensus 24 ~~~~~~~~ 31 (567)
.+.|-.|+
T Consensus 1787 sp~~a~~i 1794 (2131)
T KOG4369|consen 1787 SPQGASTI 1794 (2131)
T ss_pred CCCCCccc
Confidence 56666665
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.89 E-value=13 Score=35.41 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=73.5
Q ss_pred EEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-C--CcEEEEEcCC-CCce-eEEe---ccCCCcEEEEEEcCC
Q 008393 312 VLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D--KTVRVWDADN-PGYS-LRTF---MGHSASVMSLDFHPN 383 (567)
Q Consensus 312 ~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-d--g~I~iwd~~~-~~~~-~~~~---~~h~~~V~~l~~~p~ 383 (567)
.+||+.+.+....-....-.+..-.|.+||++|.+|+. + ..|++++... ...+ .... -.....--+....+|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 46777766554332233334445567889999999876 2 3478887653 1111 1110 011222234455678
Q ss_pred CCeEEEEEeCCCcEEEEECCCC-e-eeE-EEeC--------C-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 384 KDDLICSCDGDGEIRYWSINNG-S-CTR-VFKG--------G-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~~-~-~~~-~~~~--------~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
|+-+|+.|...-...+|.-... . ... .+-. . -..+...|+|+.++.+..+ -.|||..+.+.++.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 8766655554445556654321 1 111 1111 1 1235567887777766654 3456888887766665
Q ss_pred C
Q 008393 452 G 452 (567)
Q Consensus 452 ~ 452 (567)
.
T Consensus 207 ~ 207 (243)
T PF07250_consen 207 D 207 (243)
T ss_pred C
Confidence 4
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.67 E-value=9.8 Score=38.15 Aligned_cols=43 Identities=21% Similarity=0.070 Sum_probs=33.1
Q ss_pred EEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 516 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
+..+|.+.-||..+.....+...-...+.++.|||+.+++.|-
T Consensus 195 g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEe
Confidence 3345788999988887766655566678899999999988764
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=37 Score=35.05 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=60.4
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCe-----EEEEecC--CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 486 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-----~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~ 486 (567)
....+.+.+++..++ ++..|.+..-+ ..++ ....... ....+..+.|.+++..+++|..+.+... ...++
T Consensus 282 ~l~~v~~~~dg~l~l-~g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWL-LTRGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEE-EeCCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 345667777755554 44556554432 2221 1222221 1235888999999888887777644443 33343
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
..............++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3233222223345677888877655 6777777877655
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.29 E-value=49 Score=37.54 Aligned_cols=117 Identities=11% Similarity=0.078 Sum_probs=75.3
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCe-----eeeeecccC----------ccEEEEEECCCCCeEEEEeCC
Q 008393 287 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS----------SLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 287 ~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~-----~~~~l~~h~----------~~V~~i~fsp~~~~l~s~s~d 350 (567)
..+...++|+| +.+.||+....|...||++.... .......+. ..-..|.|.++.+.|++++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 34667899998 45689999999999999992111 111111111 223478898888888888765
Q ss_pred CcEEEEEcCCCCcee-EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 351 KTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 351 g~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
. +.++|+++..... .........|..+.-++.....++.-. ...|...++...
T Consensus 225 ~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 K-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred c-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 5 8999998743311 222334577888888877333333332 467888888763
|
These proteins are found in fungi. |
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.6 Score=46.24 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.4
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCC-cEEEEeCCCCee-----eeeeccc-----CccEEEEEECCCCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFSPSMP 342 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg-~I~vwd~~~~~~-----~~~l~~h-----~~~V~~i~fsp~~~ 342 (567)
-.++..+..|+.|+.+|..++|.+.|.+|++++..| .|.++.+..-.+ ...+..| ...|-.++|+....
T Consensus 302 f~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~ 381 (788)
T KOG2109|consen 302 FDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVST 381 (788)
T ss_pred ccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcc
Confidence 345677888999999999999999999999988655 455554421111 1111111 23455678888888
Q ss_pred eEEEEeCCCc
Q 008393 343 RLATSSFDKT 352 (567)
Q Consensus 343 ~l~s~s~dg~ 352 (567)
++..++.+|.
T Consensus 382 ~r~~gsc~Ge 391 (788)
T KOG2109|consen 382 IRTAGSCEGE 391 (788)
T ss_pred eEeecccCCC
Confidence 8888887764
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.84 E-value=27 Score=38.41 Aligned_cols=93 Identities=14% Similarity=0.263 Sum_probs=55.0
Q ss_pred eEEEEecCCCEEEEEECCC-----eEEEEECCC---CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCC
Q 008393 416 AQMRFQPHLGRYLAAAAEN-----VVSILDAET---QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 487 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~---~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~ 487 (567)
..+.|-|.|..+++...|| .|.++..+. |+.-... +....+..++|+-....++.+..+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 4578999999999887654 455554322 2221111 1234466788887777777777778999987542
Q ss_pred CceEEEeecCCCceEEEEEeCCCCe
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
...-.....-..+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 222222223344556678886543
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.84 E-value=21 Score=37.25 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
-.|..|..++.|..++-++.+|.+..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vM 129 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVM 129 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEE
Confidence 34777888999999999999995443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 567 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-28 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-20 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-20 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-20 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-20 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-20 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-20 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-20 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-19 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-19 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-18 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-17 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-17 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-17 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-16 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 9e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 7e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 7e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-08 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-13 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-11 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-11 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-09 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 4e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 7e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-08 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 3e-08 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 3e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 8e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-07 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 8e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 9e-07 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-06 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 3e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-06 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 2e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 8e-05 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 9e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 4e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 567 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.98 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.79 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.77 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.77 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.76 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.69 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.69 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.68 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.66 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.66 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.65 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.65 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.65 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.63 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.62 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.6 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.58 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.54 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.52 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.51 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.51 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.5 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.48 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.46 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.46 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.4 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.39 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.37 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.36 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.34 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.3 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.3 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.3 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.27 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.26 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.25 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.22 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.21 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.2 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.2 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.17 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.14 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.13 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.11 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.08 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.04 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.02 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.0 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.99 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.98 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.98 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.96 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.94 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.9 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.89 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.89 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.88 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.88 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.84 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.84 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.82 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.82 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.82 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.79 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.78 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.75 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.74 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.73 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.68 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.64 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.63 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.63 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.61 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.57 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.57 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.55 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.54 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.53 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.48 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.46 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.43 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.43 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.41 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.41 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.39 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.34 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.23 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.23 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.18 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.15 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.12 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.11 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.08 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.03 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.01 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.0 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.97 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.92 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.91 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.9 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.87 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.84 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.84 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.84 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.83 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.82 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.8 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.76 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.74 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.72 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.72 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.72 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.68 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.62 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.6 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.58 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.54 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.53 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.51 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.49 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.46 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.4 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.37 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.35 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.31 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 97.25 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.24 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.15 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.12 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.02 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.99 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.91 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.8 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.79 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.66 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.63 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.55 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.48 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.44 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.43 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.42 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.02 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.63 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 95.54 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.13 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.08 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.68 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.63 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.49 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.03 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 91.88 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.7 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.84 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 86.48 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 86.08 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 81.7 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 80.46 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 80.1 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=380.57 Aligned_cols=284 Identities=26% Similarity=0.500 Sum_probs=266.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+.+|.++|++++|+|++.+|++|+.||.|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|+|||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+ ...+..+.+|...|.+++|+|++.. +++|+.|+.|++||++++.++..+.++ +..+.+++++..+++++.|+.
T Consensus 180 ~~-~~~~~~~~~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 180 QG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CceeEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 87 6788889999999999999999764 559999999999999999999888764 678889999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCC--------------------CCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~--------------------g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
|++||++++++...+.+|...|.+++|+|+ |.+|++++.| .|++||++++ .++..+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEE
Confidence 999999999999999999999999999996 6789999999 9999999876 788899
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 999999999999999999999999999999999988766 7789999999999999999999999999999997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=363.34 Aligned_cols=287 Identities=21% Similarity=0.425 Sum_probs=262.1
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++....+++|.+.|++++|+||+++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 356 WDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 356 wd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|++.+.. .....+.+|...|.++.|.+++. +++++.|+.|++||+++++.+..+.+ .+.+++|+|++..+++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998643 34567889999999999998753 56899999999999999999888764 5788999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec--CCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~--~~~~i~~~~~ 506 (567)
++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|++||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 9999999999999999999999999999999999999999999999 9999999875 44444432 2347999999
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++.+|++++.|+.|++||+.+++.. .+.+|.+.|.+++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999988776 7789999999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=357.21 Aligned_cols=284 Identities=18% Similarity=0.367 Sum_probs=260.3
Q ss_pred eeeeeccCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCee--eeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~--~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
..+.+++|.+.|++++|+++ +.+|++|+.|++|+||++.+++. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34667899999999999985 67999999999999999987654 4578899999999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|++||+.+ +..+..+..|...+.+++|+|++.. +++++.|+.|++||+++++....+.. .+..++|+|++..+++
T Consensus 104 i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTT-TEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-CCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999998 7778888889999999999999874 55999999999999999988877764 4678999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.| .|++||++++ ..+..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 9999999999999999999999999999999999999999999999 9999999766 67788899999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999877 7789999999999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-43 Score=355.56 Aligned_cols=288 Identities=18% Similarity=0.351 Sum_probs=258.8
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++....+++|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-----ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEec--CCC
Q 008393 356 WDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP--HLG 425 (567)
Q Consensus 356 wd~~~~~-----~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~--~~~ 425 (567)
|++.... .....+.+|...|.+++|+|++..+ ++++.|++|++||+++++++..+.++ +.++.+.| ++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9986421 3456677899999999999997654 59999999999999999999888754 56777877 467
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--CCceE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKFH 502 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--~~~i~ 502 (567)
.+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ ..+..+..+ ...+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGAS 288 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCccccee
Confidence 89999999999999999999999999999999999999999999999999 9999999875 444444332 34688
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++++|++|+.||.|+||+
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999888766 7789999999999999999999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=380.74 Aligned_cols=353 Identities=16% Similarity=0.206 Sum_probs=279.3
Q ss_pred cCeEEEecCCCccccC--CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCccc
Q 008393 205 KPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSF 277 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~--~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~~ 277 (567)
...+.|+|||..++.. ..+.+|+..++.....+.. ....|.+. +++++ .+..|+.+++||...+...
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~------h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECC------CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecC------CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 3457899999876653 3458999987754333321 11223333 33433 2445777888887532110
Q ss_pred -------------------------------------------eeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEE
Q 008393 278 -------------------------------------------KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVL 313 (567)
Q Consensus 278 -------------------------------------------~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~v 313 (567)
+....+.+|...|.+++|+|++. +|++|+.|++|++
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 11234678888999999999886 5999999999999
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-------cCCCcEEEEEEcCCCCe
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDD 386 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~~p~~~~ 386 (567)
||..+++...++.+|...|++++|+|++++|++|+.|++|++||+.+ +..+..+. +|.+.|.+++|+|++.
T Consensus 175 wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 252 (611)
T 1nr0_A 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT- 252 (611)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-
T ss_pred EECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-
Confidence 99999999999999999999999999999999999999999999987 55666663 7999999999999986
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEe----------------------------------------------CCeeEEEE
Q 008393 387 LICSCDGDGEIRYWSINNGSCTRVFK----------------------------------------------GGTAQMRF 420 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~~~~~~----------------------------------------------~~~~~~~~ 420 (567)
+|++++.|++|++||+.+++++..+. ..+.+++|
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 45599999999999999887655432 23677899
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEe-cC-----------------------------------------------
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSL-QG----------------------------------------------- 452 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~----------------------------------------------- 452 (567)
+|++..+++++.|+.|++||+.+++....+ .+
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 999999999999999999999876543322 01
Q ss_pred ----------------------------------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 453 ----------------------------------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 453 ----------------------------------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
|...+.+++|+|+|++|++++.| .|++||+..+. ...+.. ..|
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h 490 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVH 490 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EEC
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-eeeeec-cCC
Confidence 23456789999999999999999 99999997642 122333 678
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCC-CcEEE---eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~-~~~~~---~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...|.+++|+|++++|++++.|+.|++||+.+ ++... +..|...|.+++|+|||++||+|+.|++|+|||
T Consensus 491 ~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 89999999999999999999999999999987 54442 234999999999999999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=366.44 Aligned_cols=289 Identities=17% Similarity=0.370 Sum_probs=257.2
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.+...+.+++|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--------CCeeEEEEe
Q 008393 356 WDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMRFQ 421 (567)
Q Consensus 356 wd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--------~~~~~~~~~ 421 (567)
||+.+.. .....+.+|.+.|.++.|.|++...+++|+.|+.|++||+.+++.+..+. ..+..+.++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997521 23456789999999999999877777799999999999999999887762 246778887
Q ss_pred c-CCCEEEEEECCCeEEEEECC-CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 422 P-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 422 ~-~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
+ ++..+++++.|+.|++||++ ..+.+..+.+|...|.+++|+|++++|++++.| +|++||++++ ..+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 6 67889999999999999998 457788899999999999999999999999999 9999999876 4555554332
Q ss_pred -------CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee----ccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 499 -------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 499 -------~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+.+++|+|++.+|++++.||.|++||+..++.. .+ .+|.+.|++++|+|+|.+|++|+.||.|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988766 33 5799999999999999999999999999999
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-43 Score=380.78 Aligned_cols=346 Identities=19% Similarity=0.288 Sum_probs=278.6
Q ss_pred cCeEEEecCCCccccCC-------CceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC-----CCCCCCCccceec
Q 008393 205 KPLMMFGTDGAGTLTSP-------SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-----TDPRDAGGRGMDV 271 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~-------~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~-----~~~~d~~~~~~~~ 271 (567)
...+.|+|||..+++.+ .+.+||. ++....+. .....+.+. +.+++ ....|..+++|+.
T Consensus 106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~------gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 106 VKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCC------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred eEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceec------CCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 44689999999887643 3466664 43222211 112223333 33332 2457889999997
Q ss_pred cCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-------ccCccEEEEEECCCCCeE
Q 008393 272 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-------~h~~~V~~i~fsp~~~~l 344 (567)
..+ +....+.+|.+.|.+++|+|||++||+|+.|++|+|||+.+++.+..+. +|...|.+++|+|++++|
T Consensus 178 ~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 178 PPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp TTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred CCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence 554 6778899999999999999999999999999999999999999888884 799999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCce-------------------------------------------eEEeccCCCcEEEEEEc
Q 008393 345 ATSSFDKTVRVWDADNPGYS-------------------------------------------LRTFMGHSASVMSLDFH 381 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~-------------------------------------------~~~~~~h~~~V~~l~~~ 381 (567)
++++.|++|+|||+.+ +.. ...+.+|...|.+++|+
T Consensus 255 ~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 255 ASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence 9999999999999986 322 23456899999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeEEE--------------------------------------------------
Q 008393 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------------------------------- 411 (567)
Q Consensus 382 p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-------------------------------------------------- 411 (567)
|++.. +++++.|+.|++||+.++.+...+
T Consensus 334 pdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 334 ADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp TTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred CCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 99875 559999999999999876543211
Q ss_pred -----------------------------------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE--EEEecCCC
Q 008393 412 -----------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHT 454 (567)
Q Consensus 412 -----------------------------------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~ 454 (567)
...+.+++|+|++..+++++.|+.|++||+.++.. +.. .+|.
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~ 491 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHP 491 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECS
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCC
Confidence 01235688999999999999999999999988653 233 6799
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE--eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
..|++++|+|+|++|++++.| +|++||+.+.. +.+.. +..|...|.+++|+|++++|++++.|++|++||+.++.
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999999999999999999 99999997621 22222 33488999999999999999999999999999998765
Q ss_pred --E-EEeccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 --T-MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 --~-~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. ..+.+| ...|.+++|+|++. |++++.|++|++|+
T Consensus 570 ~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 570 DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 2 356689 89999999999998 99999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=340.63 Aligned_cols=282 Identities=20% Similarity=0.339 Sum_probs=252.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+..+.|++|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEeC---CeeEEEEec-CCCEEEEEEC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG---GTAQMRFQP-HLGRYLAAAA 432 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~---~~~~~~~~~-~~~~l~~~~~ 432 (567)
+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++. ....+.+ .+.+++|+| ++..+++++.
T Consensus 84 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNT-GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCC-CcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 998 677888999999999999999976 55599999999999999874 4455543 578899999 5678999999
Q ss_pred CCeEEEEECCCCeEEEEec-CCCCCeeEEEEcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 433 ENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
|+.|++||+++......+. +|...|..++|++ ++.+|++++.| .|++||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999987 77899999999 9999999876 78899999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC--EEEEEECCCcEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVK 564 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~ 564 (567)
++.+|++++.|+.|++||+.+++.. .+..|...+.+++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999998877 7778999999999999885 688888777543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.08 Aligned_cols=290 Identities=24% Similarity=0.435 Sum_probs=248.8
Q ss_pred ceeeeeeccCCC-CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee---eecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~-~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~---~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+..+..+.+|.+ .|.+++|+|+|++||+|+.|+.|+|||+.+++... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 467788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEEcCCCC-ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeEEEe---CCeeEEEEecCCC
Q 008393 353 VRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFK---GGTAQMRFQPHLG 425 (567)
Q Consensus 353 I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~---~~~~~~---~~~~~~~~~~~~~ 425 (567)
|+|||+.... ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||+.++. ++..+. ..+..++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998643 45678899999999999999976 55699999999999998764 344443 3578899999999
Q ss_pred EEEEEECCCeEEEEECCCCe--EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC------------Cce
Q 008393 426 RYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GEC 490 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~------------~~~ 490 (567)
.+++++.|+.|++||.+++. +...+.+|...|.+++|+|+|++|++++.| .|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 557889999999999999999999999999 999999743221 134
Q ss_pred EEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE--------E--EeccccCCeeEEEEecCC-CEEEEEE
Q 008393 491 VHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--------M--TLTAHEGLIAALAVSTET-GYVASAS 558 (567)
Q Consensus 491 i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--------~--~~~~h~~~V~~l~~spdg-~~l~s~s 558 (567)
+..+.+ |...|.+++|++++..|++++.|+.|++|+...+.. . ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 445554 778899999999999999999999999999875431 1 235899999999999998 5999999
Q ss_pred CCCcEEEcC
Q 008393 559 HDKFVKLWK 567 (567)
Q Consensus 559 ~Dg~I~iWd 567 (567)
.||.|+||+
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=347.90 Aligned_cols=280 Identities=27% Similarity=0.463 Sum_probs=248.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc------------------cEEEEEECCCCCeEEE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------------------LITDVRFSPSMPRLAT 346 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~------------------~V~~i~fsp~~~~l~s 346 (567)
+|.+.|.|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999998888876542 4999999999999999
Q ss_pred EeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEec-C
Q 008393 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQP-H 423 (567)
Q Consensus 347 ~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~-~ 423 (567)
|+.|+.|+|||+.+ +..+..+.+|...|.+++|+|++.. +++++.|+.|++||++++++...+. ..+..++|+| +
T Consensus 141 ~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 99999999999997 7778889999999999999999875 4599999999999999999887765 4678889999 7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEe-------cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------
Q 008393 424 LGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------- 487 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-------- 487 (567)
+..+++++.|+.|++||+++++.+..+ .+|...|.+++|+|+|++|++++.| .|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 888999999999999999999887776 5799999999999999999999999 999999976421
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEec------CCCEEEEEEC
Q 008393 488 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST------ETGYVASASH 559 (567)
Q Consensus 488 -~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp------dg~~l~s~s~ 559 (567)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+|++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 3456678889999999999999999999999999999999998877 7789999999999986 6789999999
Q ss_pred CCcEEEcC
Q 008393 560 DKFVKLWK 567 (567)
Q Consensus 560 Dg~I~iWd 567 (567)
||.|+||+
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=361.48 Aligned_cols=342 Identities=26% Similarity=0.470 Sum_probs=286.5
Q ss_pred cCeEEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCcc
Q 008393 205 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
...+.|++||..+++ .+.+++||... +....+. . ....+... +.+++ ....|..+++|+...
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~---~---~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--- 293 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---G---HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--- 293 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEEC---C---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEe---c---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---
Confidence 345889999988766 35569999643 2222211 1 11223332 22222 234567889998643
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+....+.+|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 294 -~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 294 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 46678899999999999999999999999999999999864 5567788999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 433 (567)
|.. +..+..+.+|...|.+++|+|++..+ ++++.|+.|++||. +++.+..+.+ .+..++|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCC--CCEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 965 56778889999999999999998755 58999999999996 4566666553 56789999999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++||.. + +++..+.+|...|++++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCE
Confidence 99999996 567778899999999999999999999999999 99999963 3 678889999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++++.|+.|++||........+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999976555558889999999999999999999999999999998
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=336.24 Aligned_cols=284 Identities=22% Similarity=0.407 Sum_probs=246.9
Q ss_pred cceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCC-----CeeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 276 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~-----~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+.....|++|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 345677899999999999999965 8999999999999999863 3457788999999999999999999999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCC--
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL-- 424 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~-- 424 (567)
|++|+|||+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++. .++..+.+ .+..+.+.|..
T Consensus 86 D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 86 DKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC---
T ss_pred CCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCC
Confidence 99999999998 778889999999999999999976 556999999999999975 45555543 46778888853
Q ss_pred ----CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 425 ----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 425 ----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
..+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++.| .|++||+.++ +++..+.. ..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~ 238 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QD 238 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CS
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CC
Confidence 479999999999999999999999999999999999999999999999999 9999999876 66666664 46
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee--------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~--------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.+++|+|++.+|++++. +.+++|++...... .+ ..|...+.+++|+|+|++|++|+.||.|+|||
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 7999999999998777664 56999999877654 22 24567899999999999999999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=331.52 Aligned_cols=286 Identities=24% Similarity=0.454 Sum_probs=257.0
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+.....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 433 (567)
|+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.. .+..+.|++++..+++++.|
T Consensus 93 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSS-GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCC-CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 9998 677888999999999999999976 555999999999999999998888764 57889999999999999999
Q ss_pred CeEEEEECCCCeEEEEec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce---EEEEEeC
Q 008393 434 NVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF---HSCVFHP 508 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i---~~~~~sp 508 (567)
+.|++||+++++.+..+. .+...+..++|+|++++|++++.| .|++||++++ +++..+..+.... ......+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 466789999999999999999999 9999999876 6677777665543 2223346
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEE--CCCcEEEcC
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~I~iWd 567 (567)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999998877 7889999999999999999999997 699999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=337.04 Aligned_cols=285 Identities=18% Similarity=0.364 Sum_probs=241.6
Q ss_pred cceeeeeeccCCCCeEEEEE-----cC-CCCeEEEEeCCCcEEEEeCCC-------CeeeeeecccCccEEEEEECCCCC
Q 008393 276 SFKEANSVRASTSKVICCHF-----SS-DGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~-----s~-dg~~lasg~~dg~I~vwd~~~-------~~~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
.+.....|++|.+.|++++| ++ |+++|++|+.|++|++||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 345678899999999999999999
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-----EeCCeeE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQ 417 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-----~~~~~~~ 417 (567)
+|++|+.|++|++||+.+ +..+..+.+|...|.+++|+|++..+ ++++.|+.|++||+........ ....+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTTEE-EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCCEE-EEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 999999999999999998 67788899999999999999998754 5999999999999984433222 1235788
Q ss_pred EEEecCC----------CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 418 MRFQPHL----------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 418 ~~~~~~~----------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
++|+|++ ..+++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++.| .|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999886 6899999999999999 4567778899999999999999999999999999 99999995432
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE---Eec-----------cccCCeeEEEEecCCC
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT-----------AHEGLIAALAVSTETG 552 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-----------~h~~~V~~l~~spdg~ 552 (567)
. ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+|+
T Consensus 247 ~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 Y--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp S--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred c--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 2 22222 2456799999999998665 566888999999876533 222 6888999999999999
Q ss_pred EEEEEECCCcEEEcC
Q 008393 553 YVASASHDKFVKLWK 567 (567)
Q Consensus 553 ~l~s~s~Dg~I~iWd 567 (567)
+|++|+.||.|++|+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-41 Score=339.16 Aligned_cols=277 Identities=16% Similarity=0.207 Sum_probs=232.6
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-----------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4677899999999999999887 77788886321 11112223466789999999985 78899999999
Q ss_pred EEEEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-E
Q 008393 354 RVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-R 426 (567)
Q Consensus 354 ~iwd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~ 426 (567)
+|||++++... ...+.+|...|++++|+|+++ +|++|+.|+.|++||+++++++..+.+ .+.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999874332 123458999999999999987 455999999999999999999998875 567889999885 5
Q ss_pred EEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
+++++.|+.|++||+++++....+. .|...+.+++|+| ++++|++|+.| .|++||++++ +++..+.+|...|.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7788899999999999998887775 3566799999999 56789999999 9999999876 67788999999999
Q ss_pred EEEEeCCC-CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEECCCcEEEcC
Q 008393 503 SCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iWd 567 (567)
+++|+|++ ++|++++.|++|+|||+.+++.+.+.+|.+.|++++|+|+++ +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578899999999999999999999999999999999999986 577999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=344.21 Aligned_cols=280 Identities=12% Similarity=0.177 Sum_probs=235.2
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeC------CCcEEEEeCCCCeeee----eecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSKT----NLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~------dg~I~vwd~~~~~~~~----~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
...|...|.+++|+|||++||+|+. |+.|++|+..++.... ...+|...|.+++|+|++ .+++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCE
Confidence 4579999999999999999999997 7789999988765443 345788999999999997 4667888999
Q ss_pred EEEEEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-
Q 008393 353 VRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG- 425 (567)
Q Consensus 353 I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~- 425 (567)
|+|||+.+.... .....+|...|.+++|+|++.. |++|+.|+.|++||+++++++..+.+ .+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999874322 2345589999999999999875 55999999999999999999988865 578889999875
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEe--cCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 426 RYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
.+++++.|+.|++||+++++....+ ..|...+.+++|+|+ +.+|++++.| .|++||++++ +++..+..+...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6788889999999999998776554 346778999999997 5689999999 9999999876 6777888999999
Q ss_pred EEEEEeCCC-CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEec-CCCEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iWd 567 (567)
.+++|+|++ ++|++++.|++|+|||+.+++.+...+|.+.|++|+|+| ++.+|++|+.||.|++|+
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 799999999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=332.87 Aligned_cols=287 Identities=22% Similarity=0.342 Sum_probs=236.9
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeee-cc-cCccEEEEEECCCCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNL-EE-HSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l-~~-h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
++.+..+++|.+.|++++|+++ +||+|+.|++|++||+.++ +....+ .+ |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4567889999999999999988 9999999999999999875 455556 44 9999999999999999999999999
Q ss_pred EEEEEcCCC------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeEEEeC---CeeEEE
Q 008393 353 VRVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG---GTAQMR 419 (567)
Q Consensus 353 I~iwd~~~~------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~----~~~~~~~~---~~~~~~ 419 (567)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||+... +++..+.+ .+.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999532 345677889999999999999976 5569999999999999532 45555554 578899
Q ss_pred EecCCCEEEEEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCC--CCEEEEEeCC-eEEEEeCCCCCCC-----c
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEG-----E 489 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~d-~I~iwd~~~~~~~-----~ 489 (567)
|+|++..+++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++.| +|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678899999999999999998 7799999999 9999999754221 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE--E--EeccccC-CeeEEEEec--CCCEEEEEECCC
Q 008393 490 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--M--TLTAHEG-LIAALAVST--ETGYVASASHDK 561 (567)
Q Consensus 490 ~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~--~~~~h~~-~V~~l~~sp--dg~~l~s~s~Dg 561 (567)
+...+.. |...|.+++|++++ +|++++.|+.|++||..+++. . ...+|.. .|.+++|+| ++++||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 799999999999999987742 2 2357887 899999999 789999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=348.13 Aligned_cols=341 Identities=26% Similarity=0.443 Sum_probs=287.1
Q ss_pred CeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCccc
Q 008393 206 PLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSF 277 (567)
Q Consensus 206 ~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~~ 277 (567)
..+.|+++|..+++. +.+++||.. ++....+. . ....+..+ +.+++ ....|..+++|+...
T Consensus 184 ~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~---~---~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---- 252 (577)
T 2ymu_A 184 WGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT---G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---- 252 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEE---C---CSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----
T ss_pred eeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEe---c---CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC----
Confidence 457888898877664 456999964 43322221 1 11223333 33332 234677889998532
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++....+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 567888999999999999999999999999999999996 5677888999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg 434 (567)
+.. ..+..+.+|...|.+++|+|++.. +++++.|+.|++||. +++.+..+.. .+.+++|+|++..+++++.|+
T Consensus 332 ~~~--~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 332 RNG--QHLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TTS--CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCC--CeeEEEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 874 456778899999999999999875 558999999999996 4566666553 578899999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++||+.. +.+..+..|...|.+++|+|++++|
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 9999995 567788899999999999999999999999999 999999742 5778889999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++.|+.|++||........+.+|...|++++|+|++++||+++.||.|+|||
T Consensus 483 as~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 483 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 999999999999976555558889999999999999999999999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=326.86 Aligned_cols=283 Identities=18% Similarity=0.283 Sum_probs=255.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeee-----------EEEe---C--Cee
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCT-----------RVFK---G--GTA 416 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~-----------~~~~---~--~~~ 416 (567)
+.+ +..+..+. +...|.+++|+|++..++ +++.+ +.|++||+...... ..+. + .+.
T Consensus 103 ~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 103 VSN-GQCVATWK-SPVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTT-CCEEEEEE-CSSCEEEEEECTTSSEEE-EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCC-CcEEEEee-cCCCeEEEEEccCCCEEE-EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 998 56666666 889999999999987555 77777 99999999876422 1221 1 678
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCC-CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.++|+|++..+++++.++.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.| .|++||++++ ..+..+
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~ 256 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY 256 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence 899999999999999999999999999 78899999999999999999999999999999 9999999876 455555
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCC--------------eEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEEC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQ--------------SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg--------------~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
. +...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 5 678899999999999999999988 8999999998877 77889999999999999999999999
Q ss_pred CCcEEEcC
Q 008393 560 DKFVKLWK 567 (567)
Q Consensus 560 Dg~I~iWd 567 (567)
||.|+||+
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 99999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=319.40 Aligned_cols=285 Identities=21% Similarity=0.381 Sum_probs=245.1
Q ss_pred cceeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCC-----eeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 276 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+....+|+||++.|++|+|+|+ +++||+|+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34556789999999999999997 689999999999999998754 356778899999999999999999999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEEEEecCC-
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHL- 424 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~~~- 424 (567)
|+.|++|+... .........+...+..+.+.+++.. +++++.|+.+++||+......... ...+..++|+++.
T Consensus 107 d~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecc-cceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999987 6666777788899999999998765 459999999999999876654432 2356778887765
Q ss_pred -CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 425 -GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 425 -~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.| .|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 456788889999999999999999999999999999999999999999999 9999999876 56666654 46799
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----------EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++.|+|++. +++++.|+.|++||++++..+ ...+|...|++++|+|++++|++|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999875 667778999999999987654 2346889999999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.90 Aligned_cols=243 Identities=19% Similarity=0.323 Sum_probs=211.6
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee----ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN----LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~----l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
..|...|.+++|++++ .|++|+.||.|+|||+.+++.... +.+|...|++|+|+|++++|++|+.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3567889999999985 788999999999999998876544 44899999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCC-EEEEEECC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLG-RYLAAAAE 433 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~-~l~~~~~d 433 (567)
+ +..+..+.+|...|.+++|++++..++++|+.|+.|++||+++++....+.. .+.+++|+|+++ .+++++.|
T Consensus 158 ~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 Q-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp T-TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred C-CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 8 7888999999999999999999988888999999999999999988776542 367889999665 56678889
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
+.|++||+++++++..+.+|...|++++|+|++ ++|++++.| +|+|||+.++ + +..+.+|...|.+++|+|++.
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSST
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999998 589999999 9999999875 3 446788999999999999987
Q ss_pred e-EEEEEcCCeEEEEECCCCcE
Q 008393 512 S-LLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 512 ~-l~~~~~dg~I~iwd~~~~~~ 532 (567)
. |++++.|++|++|++.+...
T Consensus 313 ~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TEEEEEETTSCEEEEECCC---
T ss_pred eEEEEEcCCCeEEEEECCCCCC
Confidence 5 55789999999999987543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=335.71 Aligned_cols=245 Identities=24% Similarity=0.489 Sum_probs=226.8
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+++|.+.|.+++|+|++++|++|+.|++|+|||+.+++.+.++.+|...|.+++|+|++.+|++|+.|++|++||+
T Consensus 142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecC------------
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH------------ 423 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~------------ 423 (567)
.+ +.++..+.+|...|.++.|++++. ++++|+.|+.|++||+.++++...+.+ .+.++.|+|+
T Consensus 222 ~~-~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 222 QT-GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp TT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CC-CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 98 778889999999999999999976 566999999999999999998887764 4678889986
Q ss_pred --------CCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 424 --------LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 424 --------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
+..+++++.|+.|++||++++.++..+.+|...|.+++|+|+|++|++++.| .|++||+.++ .++..+
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~ 376 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTL 376 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEE
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEE
Confidence 5679999999999999999999999999999999999999999999999999 9999999766 677888
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
..|...|.+++|+|++.+|++++.|+.|++|+++
T Consensus 377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 8999999999999999999999999999999863
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=318.37 Aligned_cols=279 Identities=19% Similarity=0.287 Sum_probs=249.2
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee---eec--ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~---~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+|.+.|.+++|+|++++|++++ ||.|++||+.+++... .+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3347999999999999999999999 9999999998765433 333 789999999999999999999999999999
Q ss_pred EcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 432 (567)
|+.+... ....+..|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.. .+..++|+|++..+++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9987432 45677889999999999998764 55899999999999999998888764 5788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
++.|++||+++++.+..+. +...+.+++|+|++++|++++.+ .|++||++++. ...+..+...+.+++|+|+++
T Consensus 204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC
Confidence 9999999999999887775 77889999999999999999998 99999998752 346778889999999999999
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.|+.|++||+.+++......|...|.+++|+|++++|++++.||.|++||
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 99999999999999999999887778999999999999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=314.18 Aligned_cols=250 Identities=20% Similarity=0.373 Sum_probs=222.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
..+..+..|..+|.+++|++++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||
T Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEec--CCCEEEEEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAA 431 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~--~~~~l~~~~ 431 (567)
+++.......+.+|...|.+++|+|.+..++++|+.|+.|++||+.+......+. ..+..+.|.+ ++..+++++
T Consensus 126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 9985567778899999999999999666678899999999999999887666554 3456777876 667899999
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||+.++ +++..+..+...+.+++|+|++
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTC
T ss_pred CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999 9999999876 6788888899999999999988
Q ss_pred Ce-EEEEEcCCeEEEEECCCC
Q 008393 511 PS-LLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 511 ~~-l~~~~~dg~I~iwd~~~~ 530 (567)
.. +++++.++.+.+|++.+.
T Consensus 283 ~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 283 RKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp GGGCEEEEETTEEEEEECC--
T ss_pred CceEEEEecCCceEEEEeccC
Confidence 53 355566777888887653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=328.94 Aligned_cols=283 Identities=15% Similarity=0.198 Sum_probs=252.3
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe------eeeeecccCccEEEEEECCC----C---CeE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPS----M---PRL 344 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~----~---~~l 344 (567)
.....+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677889999999999999 799999999999999999887 78889999999999999999 9 999
Q ss_pred EEEeCCCcEEEEEcCCCCce-----eEEeccC-----CCcEEEEEEc----CCCCeEEEEEeCCCcEEEEECCC------
Q 008393 345 ATSSFDKTVRVWDADNPGYS-----LRTFMGH-----SASVMSLDFH----PNKDDLICSCDGDGEIRYWSINN------ 404 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~-----~~~~~~h-----~~~V~~l~~~----p~~~~li~s~~~dg~I~iwd~~~------ 404 (567)
++++.||.|++||+.+ ... +..+..| ...|.+++|+ |++..++++++.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999999999999987 444 6778888 5999999999 99876366999999999999998
Q ss_pred CeeeE-----EE----------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC---C---CCCeeEEEEc
Q 008393 405 GSCTR-----VF----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H---TKPIDSVCWD 463 (567)
Q Consensus 405 ~~~~~-----~~----------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h---~~~V~~l~~s 463 (567)
++.+. .+ ...+.+++|+|++ .+++++.++.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66555 55 3467899999999 999999999999999999999999998 9 9999999999
Q ss_pred CCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeec-------------CCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 464 PSGELLASVSED----SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 464 p~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
|++++|++++.| .|++||++++ +.+..+.. |...|.+++|+|++.+|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999876 8999999876 67778887 899999999999999999999999999999
Q ss_pred CCCCcEE-Eec------cc---------------cCCeeEEEEecCC----------CEEEEEECCCcEEEcC
Q 008393 527 MSENKTM-TLT------AH---------------EGLIAALAVSTET----------GYVASASHDKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~-~~~------~h---------------~~~V~~l~~spdg----------~~l~s~s~Dg~I~iWd 567 (567)
+.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9998877 566 67 8999999999998 7999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=339.86 Aligned_cols=303 Identities=19% Similarity=0.210 Sum_probs=262.6
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC----CeeeeeecccCccEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVR 336 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~ 336 (567)
..|+.+++|+...+...+.+..+ .|...|.+++|+|++++|++|+.||.|++||+.+ .+.+..+.+|...|++++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 45678899998877543344444 5899999999999999999999999999999987 468888999999999999
Q ss_pred ECCC-CCeEEEEeCCCcEEEEEcCCCC------ce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 337 FSPS-MPRLATSSFDKTVRVWDADNPG------YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 337 fsp~-~~~l~s~s~dg~I~iwd~~~~~------~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
|+|+ +.+|++++.||.|++||+.+.. .. +..+..|...|.+++|+|++..++++++.|+.|++||+++++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 8999999999999999998744 21 2234679999999999999767888999999999999999998
Q ss_pred eEEEeC---------CeeEEEEecCC-CEEEEEECCC---eEEEEECCCC-eEEEEec-CCCCCeeEEEEcC-CCCEEEE
Q 008393 408 TRVFKG---------GTAQMRFQPHL-GRYLAAAAEN---VVSILDAETQ-ACRLSLQ-GHTKPIDSVCWDP-SGELLAS 471 (567)
Q Consensus 408 ~~~~~~---------~~~~~~~~~~~-~~l~~~~~dg---~I~i~d~~~~-~~~~~~~-~h~~~V~~l~~sp-~g~~l~s 471 (567)
+..+.. .+.+++|+|++ ..+++++.++ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 887753 47889999997 5788888888 9999999986 6677777 8999999999999 9999999
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcEE-Ee-------------
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TL------------- 535 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~------------- 535 (567)
++.| .|++||++++ +.+..+..|...+.+++|+|++ .+|++++.|+.|++||+.+.... ..
T Consensus 281 ~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 281 SGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 9999 9999999876 7788889999999999999999 89999999999999999876532 11
Q ss_pred ----------------------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 536 ----------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 536 ----------------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..|...+.+++|+|+|++|++++.||.|+||+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 01667888999999999999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=328.84 Aligned_cols=277 Identities=16% Similarity=0.234 Sum_probs=249.2
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
..+|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+ +
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~ 181 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS-G 181 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT-T
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC-C
Confidence 345889999999999999999999999999999 67888999999999999999999999999999999999999987 6
Q ss_pred ceeEEeccCCCc---------------EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCC
Q 008393 363 YSLRTFMGHSAS---------------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL 424 (567)
Q Consensus 363 ~~~~~~~~h~~~---------------V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~ 424 (567)
..+..+..+... +.+++|++++ .+++++.|+.|++||+.+++.+..+. ..+..++|+|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 777778777776 9999999874 35688999999999999998887775 457889999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
..+++++.++.|++||+++++.+..+..|...|.+++|+|++ +|++++.| .|++||++++ ..+..+..+...+.+
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFA 335 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEE
Confidence 999999999999999999999999999999999999999999 99999999 9999999776 678888889999999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCc--------------------EE-EeccccC--CeeEEEEecCCCEEEEEECC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEG--LIAALAVSTETGYVASASHD 560 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------------------~~-~~~~h~~--~V~~l~~spdg~~l~s~s~D 560 (567)
++|+|++++|++++.|+.|++||+.++. .+ .+..|.. .|++++|+|++++|++++.|
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL 415 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence 9999999999999999999999998877 44 7778866 99999999999999999999
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
|.|+|||
T Consensus 416 g~i~iw~ 422 (425)
T 1r5m_A 416 QEGSVVA 422 (425)
T ss_dssp SCCEEEE
T ss_pred ceEEEEe
Confidence 9999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=316.37 Aligned_cols=263 Identities=19% Similarity=0.309 Sum_probs=242.4
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
++.|+.+++|+...+ .......+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|
T Consensus 54 gs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 54 GSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp EETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred EcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence 456778999998654 2345567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---Cee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTA 416 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~ 416 (567)
++++|++++.||.|++||+++ +.....+..|...|.+++|+|+++ ++++|+.|+.|++||+++++.+..+.+ .+.
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~-~~~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 210 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVES-GKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTT-CSEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCC
T ss_pred CCCEEEEEcCCCcEEEEEcCC-CceeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCcee
Confidence 999999999999999999998 566777888999999999999987 555999999999999999999988875 468
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
+++|+|++..+++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++.| .|++||+.++ .++..+.
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~ 287 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFF 287 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999876 7888999
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.|...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999963
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=347.27 Aligned_cols=283 Identities=23% Similarity=0.408 Sum_probs=243.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-----eeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.....+++|++.|+|++|++++ ++|++|+.|++|+||++.+. .....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4455789999999999999875 79999999999999999753 45677899999999999999999999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eCCeeEEEEecCC-
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPHL- 424 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~~~~~~~~~~~~- 424 (567)
+|+|||+.+ +..+..+.+|...|.+++|+|++..+ ++|+.|+.|++||+......... ...+.+++|+|++
T Consensus 453 ~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEE-EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999997 77788899999999999999998755 49999999999998765444332 2347889999986
Q ss_pred -CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 425 -GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 425 -~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
..+++++.|+.|++||++++++...+.+|...|++++|+|++++|++++.| .|++||++++ +++..+.. ...+.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 578999999999999999999999999999999999999999999999999 9999999876 55655543 56799
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eeccc-------------------cCCeeEEEEecCCCEEEEEECCCc
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
+++|+|++.+|+++ .++.|+|||+.++..+ .+..+ ...+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999998866554 5677999999998766 22211 123789999999999999999999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|+||+
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=327.69 Aligned_cols=275 Identities=18% Similarity=0.277 Sum_probs=237.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
..+.+..|++++++||+|+.||.|++||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.+ +..+..
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~ 176 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRT 176 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCceE
Confidence 4455568899999999999999999999999999999999999999999999999999999999999999997 667788
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---------------------------CeeEEEE
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------------GTAQMRF 420 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---------------------------~~~~~~~ 420 (567)
+.+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.. .+..++|
T Consensus 177 ~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EECCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EcCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 8999999999999999775 55999999999999999999888763 2233456
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeec-
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSC- 496 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~- 496 (567)
+|++..+++++.|+.|++||+++++.+..+. .|...|.+++|+|++. +|++++.| .|++||++++.. .+..+..
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~ 333 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLIN 333 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEES
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhcc
Confidence 7888899999999999999999998777765 4888999999999999 99999999 999999987632 3455555
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC----------cEEEeccccCCeeEEEEecCCC---EEEEEECCCcE
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----------KTMTLTAHEGLIAALAVSTETG---YVASASHDKFV 563 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~----------~~~~~~~h~~~V~~l~~spdg~---~l~s~s~Dg~I 563 (567)
+...+.++ +.+++.+|++++.|+.|++||+... ....+..|.+.|.+++|+|++. .|++++.+|.+
T Consensus 334 ~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~ 412 (420)
T 3vl1_A 334 EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFC 412 (420)
T ss_dssp TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceE
Confidence 56667776 4557889999999999999998763 2335678899999999999999 78888889999
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
.+|+
T Consensus 413 ~~~~ 416 (420)
T 3vl1_A 413 ALYN 416 (420)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9995
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=334.53 Aligned_cols=352 Identities=13% Similarity=0.183 Sum_probs=270.2
Q ss_pred CCcCeEEEecCCCcccc--CCCceeeeCCCc----chhhcccccccCCCCCCc-eEEe-ecc--CC----CCCCCCCccc
Q 008393 203 TSKPLMMFGTDGAGTLT--SPSNQLWDDKDL----ELRADMDRLVEDGSLDDN-VESF-LSH--DD----TDPRDAGGRG 268 (567)
Q Consensus 203 ~~~~~~~~~~dg~~~~~--~~~~~~Wd~~~g----~~~~~~~~~~~~~~~~~~-v~~~-~~~--~~----~~~~d~~~~~ 268 (567)
.....+.|+|||..++. .+.+.+||..++ +....+.. .... +.+. +.+ ++ ....|+.+++
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~------h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG------HGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT------TTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec------CCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 34556899999987666 345699999987 43333221 1122 3333 333 32 2345778889
Q ss_pred eeccCCc-----cceee--------------------------------------------eeeccCCCCeEEEEEcCCC
Q 008393 269 MDVSQGF-----SFKEA--------------------------------------------NSVRASTSKVICCHFSSDG 299 (567)
Q Consensus 269 ~~~~~~~-----~~~~~--------------------------------------------~~l~~h~~~V~~l~~s~dg 299 (567)
|+..++. ..... ..+.+|...|.+++|+|++
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCC
Confidence 9886431 11222 2344566666666666666
Q ss_pred C-eEEEEeCCCcEEEEeCCCCeeeeeecccCc---cEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCceeEEe-c---c
Q 008393 300 K-LLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF-M---G 370 (567)
Q Consensus 300 ~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~---~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~---~ 370 (567)
+ +|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+ +..+..+ . .
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEP 251 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBC
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccc
Confidence 5 688888899999999999999999999999 9999999999 99999999999999999987 6667777 5 8
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-------eeEE-------------------------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQM------------------------- 418 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-------~~~~------------------------- 418 (567)
|...|.+++|+ ++. ++++++.|+.|++||+++++.+..+..+ ...+
T Consensus 252 ~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 252 VQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred cCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 99999999999 655 5669999999999999987766554322 0011
Q ss_pred -------------------------------------------------EE-----------------------------
Q 008393 419 -------------------------------------------------RF----------------------------- 420 (567)
Q Consensus 419 -------------------------------------------------~~----------------------------- 420 (567)
.|
T Consensus 330 ~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 409 (615)
T 1pgu_A 330 EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 409 (615)
T ss_dssp EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCE
T ss_pred cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCc
Confidence 11
Q ss_pred -----ecC--------------------------------------CCEEEEEEC-CCeEEEEECCCCeEE-EEecCCCC
Q 008393 421 -----QPH--------------------------------------LGRYLAAAA-ENVVSILDAETQACR-LSLQGHTK 455 (567)
Q Consensus 421 -----~~~--------------------------------------~~~l~~~~~-dg~I~i~d~~~~~~~-~~~~~h~~ 455 (567)
+|+ +..+++++. ++.|++||+.+++.. ..+.+|..
T Consensus 410 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 489 (615)
T 1pgu_A 410 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 489 (615)
T ss_dssp EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred eEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccC
Confidence 000 334444555 666666666665554 56677899
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeC----------CCCeEEEEEcCCeEE
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHP----------TYPSLLVIGCYQSLE 523 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp----------~~~~l~~~~~dg~I~ 523 (567)
.|.+++|+|++++|++++.| .|++||+.++ +.+..+.. |...|.+++|+| ++++|++++.|+.|+
T Consensus 490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 490 KPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 99999999999999999999 9999999876 67777777 899999999999 999999999999999
Q ss_pred EEECCCC-cEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 524 LWNMSEN-KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~-~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+||+.++ +.+ .+.+|...|++++|+|+++ |++++.||.|++||
T Consensus 567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999987 444 6789999999999999999 99999999999996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=318.85 Aligned_cols=279 Identities=15% Similarity=0.211 Sum_probs=245.4
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred CCce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eEEE----eCCeeEEEEecCCCEEEEEE
Q 008393 361 PGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVF----KGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 361 ~~~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---~~~~----~~~~~~~~~~~~~~~l~~~~ 431 (567)
+.. ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+ ...+.+++|+|++..+++++
T Consensus 84 -~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 -RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp -TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 432 334467999999999999976 555899999999999998763 3333 34678999999999999999
Q ss_pred CCCeEEEEEC------------------CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 432 AENVVSILDA------------------ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 432 ~dg~I~i~d~------------------~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.| .|++||++++ +.+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~ 238 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVA 238 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeE
Confidence 9999999995 4678899999999999999999999999999999 9999999876 6788
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC--CcE--------------------------------------
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--NKT-------------------------------------- 532 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~--~~~-------------------------------------- 532 (567)
.+..+...+.+++|+|++.+|+++ .|+.|++|++.+ +..
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 888999999999999999877766 999999999987 421
Q ss_pred -EEe-ccccCCeeEEEEe-cCC---CEEEEEECCCcEEEcC
Q 008393 533 -MTL-TAHEGLIAALAVS-TET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 533 -~~~-~~h~~~V~~l~~s-pdg---~~l~s~s~Dg~I~iWd 567 (567)
..+ .+|...|++++|. ++| .+|++|+.||.|+|||
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 4899999999976 666 8999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=321.54 Aligned_cols=244 Identities=17% Similarity=0.286 Sum_probs=207.0
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee----eecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~----~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
....+|...|++++|+|++.+ ++++.||+|+|||+.+++... ...+|...|++++|+|++++|++|+.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 445679999999999999865 567789999999998876543 344899999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCC-EEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-RYLAA 430 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~l~~~ 430 (567)
|+.+ +..+..+.+|...|.+++|++++..++++++.|+.|++||+++++....+. ..+.+++|+|+++ .++++
T Consensus 167 d~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 167 DLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred ECCC-CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 9998 788889999999999999999988788899999999999999988766543 3467899999865 56677
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++.| +|+|||++++ +++.. .+|...|++++|+|
T Consensus 246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECS
T ss_pred ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeC
Confidence 889999999999999999999999999999999987 589999999 9999999876 44444 47899999999998
Q ss_pred -CCCeEEEEEcCCeEEEEECCCC
Q 008393 509 -TYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 509 -~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
++.+|++++.|+.|++||+...
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 7899999999999999999754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=302.77 Aligned_cols=278 Identities=15% Similarity=0.251 Sum_probs=246.8
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++....+++|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 35678899999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEec-CCCEEEE
Q 008393 356 WDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQP-HLGRYLA 429 (567)
Q Consensus 356 wd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~-~~~~l~~ 429 (567)
|++.... ..+..+.+|...|.+++|. ++ ++++++.|+.|++|| .++.+..+. ..+..+.+.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9997632 4567888999999999994 33 666999999999999 566665554 3567788887 8899999
Q ss_pred EECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 430 AAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
++.++.|++|| ..+....+.. |...|.+++|+|++. |++++.| .|++||++++ +.+..+..|...+.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566667777 899999999999998 8888888 9999999876 6788888999999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++ .|++++.|+.|++||+.+++.. .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 6999999999999999999877 6778999999999999998 66799999999996
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=318.87 Aligned_cols=290 Identities=17% Similarity=0.305 Sum_probs=247.5
Q ss_pred ccceeeeee-ccCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCeeeeeecc-----cCccEEEEEECCC----
Q 008393 275 FSFKEANSV-RASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPS---- 340 (567)
Q Consensus 275 ~~~~~~~~l-~~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~~~~l~~-----h~~~V~~i~fsp~---- 340 (567)
+.|+....+ .+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+
T Consensus 5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS 84 (366)
T ss_dssp CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC
T ss_pred eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC
Confidence 344554444 489999999999984 45666666778999999998887777764 5578999999998
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE---e---CC
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---K---GG 414 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~---~---~~ 414 (567)
+.+|++|+.||.|++||+.+ +..+..+.+|...|.+++|+|++..++++++.||.|++||+++++.+..+ . ..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp CEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred CCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 66999999999999999997 67788889999999999999943456779999999999999999988887 2 36
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe----------------------------cCCCCCeeEEEEcCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL----------------------------QGHTKPIDSVCWDPSG 466 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~----------------------------~~h~~~V~~l~~sp~g 466 (567)
+.+++|+|++..+++++.|+.|++||+++++....+ ..|...|.+++|+ +
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 788999999999999999999999999987544333 3499999999999 7
Q ss_pred CEEEEEeCC-eEEEEeCCCCCC-----------CceEEEeecCCCceEEEEEeCC--CCeEEEEEcCCeEEEEECCCCcE
Q 008393 467 ELLASVSED-SVRVWTVGSGSE-----------GECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~~~-----------~~~i~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
++|++++.| .|++||+.++.. ...+..+..+...+.+++|+|+ +.+|++++.||.|++||+.+++.
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 799999999 999999987532 2457788889999999999999 99999999999999999998753
Q ss_pred -----EEeccc--cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 -----MTLTAH--EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 -----~~~~~h--~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 256666 79999999999999999999999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=315.94 Aligned_cols=283 Identities=14% Similarity=0.251 Sum_probs=236.4
Q ss_pred ceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECC-CCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP-SMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp-~~~~l~s~s~dg~ 352 (567)
+.....+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45677889999999999999999 999999999999999999888777765 6999999999999 7789999999999
Q ss_pred EEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCC-
Q 008393 353 VRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG- 425 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~- 425 (567)
|++||+.+ ..+..+.. |...|.+++|+|++. ++++++.|+.|++||+ +++.+..+. ..+.+++|+|++.
T Consensus 143 i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCC--CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 99999985 34455544 448899999999977 5569999999999999 466666665 4578899999998
Q ss_pred EEEEEECCCeEEEEECCC----CeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEee----
Q 008393 426 RYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELS---- 495 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~---- 495 (567)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++.| .|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999998 6677666 6999999999999 99999999999 99999998875433332111
Q ss_pred cC----------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecc--ccCCeeEEEEecCCCEEEEEECCCc
Q 008393 496 CN----------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 496 ~~----------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.+ ...+..++|+|++.+ +++.|+.|++||+.+++.+ .+.+ |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 11 133445666666665 6678999999999998877 5554 567888889999999999997 999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=314.60 Aligned_cols=286 Identities=16% Similarity=0.205 Sum_probs=241.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCeE-EEEeC---CCcEEEEeCCCCeeeeeec-ccCccEEEEEECCC---CCeEEEEeCCC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLL-ATGGH---DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS---MPRLATSSFDK 351 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~l-asg~~---dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~---~~~l~s~s~dg 351 (567)
...+++|.+.|.+++|+|++..| ++|+. |+.|+|||+.+++...... +|...|.+++|+|+ +.+|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999655 55655 8999999999887765543 79999999999998 69999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEE------cCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEeC-------CeeE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDF------HPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG-------GTAQ 417 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~-------~~~~ 417 (567)
.|++||+.+....+..+.+|...|.+++| ++++. ++++++.|+.|++||+++++ .+..+.. .+..
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 99999999855478889999999999966 56665 56699999999999999987 6666643 4566
Q ss_pred EE----EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC---CCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 418 MR----FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 418 ~~----~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp---~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
+. |++++..+++++.++.|++||+++++.... ..|...|.+++|+| ++.+|++++.| .|++||++++....
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK 248 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence 66 678999999999999999999999987544 55889999999999 99999999999 99999998764433
Q ss_pred eEE--EeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCc--------------------EEEeccccCCeeEEE
Q 008393 490 CVH--ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--------------------TMTLTAHEGLIAALA 546 (567)
Q Consensus 490 ~i~--~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~--------------------~~~~~~h~~~V~~l~ 546 (567)
.+. .+..|...|.+++|+|++. +|++++.||.|++||+..+. ...+..|...|++++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence 332 4458899999999999998 89999999999999997542 236778999999999
Q ss_pred EecCCCEEE-EEECCCcEEEcC
Q 008393 547 VSTETGYVA-SASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~-s~s~Dg~I~iWd 567 (567)
|+|++++|+ +++.||.|+|||
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEE
T ss_pred EcCCCCeEEEEecCCCcEEEEE
Confidence 999999998 899999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=307.68 Aligned_cols=242 Identities=23% Similarity=0.428 Sum_probs=219.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+. +....+.+|...|.++.|++++ .|++++.|++|+
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~ 167 (340)
T 1got_B 89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCA 167 (340)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEE
T ss_pred cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEE
Confidence 45567789999999999999999999999999999999865 4566788999999999999877 599999999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 431 (567)
+||+.+ +..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.+ .+.+++|+|++..+++++
T Consensus 168 ~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 168 LWDIET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp EEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCC-CcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 999998 778889999999999999999976 566999999999999999999888764 578899999999999999
Q ss_pred CCCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 432 AENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.|+.|++||+++++.+..+.. +...|.+++|+|+|++|++++.| .|++||+.++ ..+..+.+|...|.+++|+|
T Consensus 246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECT
T ss_pred CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcC
Confidence 999999999999988777653 33579999999999999999999 9999999776 67888899999999999999
Q ss_pred CCCeEEEEEcCCeEEEEE
Q 008393 509 TYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd 526 (567)
++.+|++++.|+.|+|||
T Consensus 323 dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 323 DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEcCCccEEecC
Confidence 999999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=318.89 Aligned_cols=280 Identities=18% Similarity=0.279 Sum_probs=246.8
Q ss_pred eeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeC----CCCe------eeeeecc----------cCccEEEEEEC
Q 008393 280 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT----DTLK------SKTNLEE----------HSSLITDVRFS 338 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~----~~~~------~~~~l~~----------h~~~V~~i~fs 338 (567)
......|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++ ....+.. |...|++++|+
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 344456779999999999999 9999999999999999 8887 4555544 68899999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---- 414 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---- 414 (567)
|++++|++++.||.|++||.. +..+..+.+|...|.+++|+|++.. +++++.|+.|++||+.+++.+..+...
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 999999999999999999943 6678888999999999999999775 458899999999999999988877542
Q ss_pred --------------eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 008393 415 --------------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 479 (567)
Q Consensus 415 --------------~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~i 479 (567)
+..+.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.| .|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp -----------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 667788887 779999999999999999999998999999999999999999999999999 9999
Q ss_pred EeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEE
Q 008393 480 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
||++++ ..+..+..+...+.+++|+|++ +|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++
T Consensus 274 ~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 274 WHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp ECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred EECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 999876 5666777889999999999999 9999999999999999998877 6778999999999999999999999
Q ss_pred CCCcEEEcC
Q 008393 559 HDKFVKLWK 567 (567)
Q Consensus 559 ~Dg~I~iWd 567 (567)
.||.|+|||
T Consensus 350 ~dg~i~i~~ 358 (425)
T 1r5m_A 350 MDGQVNVYD 358 (425)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=347.37 Aligned_cols=348 Identities=13% Similarity=0.132 Sum_probs=258.7
Q ss_pred cCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC---CCCCCCCccceeccCCccc
Q 008393 205 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFSF 277 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~---~~~~d~~~~~~~~~~~~~~ 277 (567)
...++|+|+|..+++. +.+++||..+++....... ...|... +.++. ....|..+++|++.++.
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~-------~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~-- 90 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLED-------RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK-- 90 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSS-------CCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCC-------CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--
Confidence 4578999999987764 4679999887654322211 1123333 22211 23467889999998874
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-----------eeecccCccEEEEEECCC-CCeEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----------TNLEEHSSLITDVRFSPS-MPRLA 345 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-----------~~l~~h~~~V~~i~fsp~-~~~l~ 345 (567)
.+..+. |.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|...|++++|+|+ +..|+
T Consensus 91 -~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 91 -VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp -EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred -EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 444454 7789999999999999999999999999999988764 345679999999999996 46899
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeccC------------------CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 346 TSSFDKTVRVWDADNPGYSLRTFMGH------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 346 s~s~dg~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
+|+.||.| +||+.+ +..+..+..| ...|.+++|+|++. +|++++.||.|++||++++++
T Consensus 169 ~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred EEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE
Confidence 99999999 999997 6667777655 57899999999976 556999999999999998877
Q ss_pred eEE--E-------------------eCCeeEEEEec----CCCE------------------------------------
Q 008393 408 TRV--F-------------------KGGTAQMRFQP----HLGR------------------------------------ 426 (567)
Q Consensus 408 ~~~--~-------------------~~~~~~~~~~~----~~~~------------------------------------ 426 (567)
+.. + ...+..++|++ ++..
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 643 1 11345566642 2222
Q ss_pred -----------------------------------------EEEEECCCeEEEEECCCCeEEEE----------------
Q 008393 427 -----------------------------------------YLAAAAENVVSILDAETQACRLS---------------- 449 (567)
Q Consensus 427 -----------------------------------------l~~~~~dg~I~i~d~~~~~~~~~---------------- 449 (567)
+++++.|+.|++||+.++.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 22333345556666544432211
Q ss_pred -------------------------ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc-eEEE--ee-----
Q 008393 450 -------------------------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE-CVHE--LS----- 495 (567)
Q Consensus 450 -------------------------~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~-~i~~--~~----- 495 (567)
+.+|...+.+++|+|++++|++|+.| +|++||+.++.... .+.. +.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 12333444455667899999999999 99999998773211 1111 11
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--------------------------------------------
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------------------------------------------- 531 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------------------------------------------- 531 (567)
+|...|.+++|+|++++|++++.|++|+|||+.+++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 678899999999999999999999999999998662
Q ss_pred --EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 --TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 --~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...+.+|.+.|++|+|+||| +||+|+.|++|+|||
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 23667899999999999999 999999999999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=300.37 Aligned_cols=265 Identities=18% Similarity=0.289 Sum_probs=232.3
Q ss_pred CCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
.+.|+.+++|+...... -..+..+++|...|.+++|+++|++|++|+.|++|+|||+.+++.+..+.+|...|.+++|
T Consensus 36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~ 115 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115 (319)
T ss_dssp EETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred ecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEE
Confidence 34677889998864321 2356789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC-----CeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-----~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
+|++.+|++|+.|++|++||+. +..+..+.+|...|.+++|.|.. ..++++++.|+.|++||+++.+....+.
T Consensus 116 ~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 116 DKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp CTTSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence 9999999999999999999997 45678889999999999999863 2367799999999999999998887775
Q ss_pred C---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 413 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 413 ~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+ .+.+++|+|++..+++++.|+.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.+.+++|++... .
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~ 269 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---Y 269 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTE---E
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---e
Confidence 4 5788999999999999999999999999999999888854 6899999999999999998889999999754 3
Q ss_pred eEEEee--------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 490 CVHELS--------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 490 ~i~~~~--------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 344333 23567899999999999999999999999998654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=320.05 Aligned_cols=284 Identities=13% Similarity=0.230 Sum_probs=235.7
Q ss_pred eeeeee-ccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCC---Ce---eeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 278 KEANSV-RASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT---LK---SKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 278 ~~~~~l-~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~---~~---~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
+.+..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 567777 89999999999999 999999999999999999876 33 22333 59999999999999999999999
Q ss_pred CCcEEEEEcC--CCCceeEEecc------------CCCcEEEEE--EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 350 DKTVRVWDAD--NPGYSLRTFMG------------HSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 350 dg~I~iwd~~--~~~~~~~~~~~------------h~~~V~~l~--~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
||.|++||++ ..+..+..+.+ +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999999995 11333333322 455666666 44565 4667999999999999999999888764
Q ss_pred -----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcC----CCCEEEEEeCC-eEEEEeC
Q 008393 414 -----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP----SGELLASVSED-SVRVWTV 482 (567)
Q Consensus 414 -----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp----~g~~l~s~s~d-~I~iwd~ 482 (567)
.+.+++|+|++..+++++.|+.|++||+++++++..+. .|...|.+++|+| ++.+|++++.| .|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 57889999999999999999999999999999999886 7888999996664 67899999999 9999999
Q ss_pred CCCCCCceEEEeec--------------------------CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee
Q 008393 483 GSGSEGECVHELSC--------------------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL 535 (567)
Q Consensus 483 ~~~~~~~~i~~~~~--------------------------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~ 535 (567)
+++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 876 45544443 44558889999 7789999999999999999987644 23
Q ss_pred cc-------------------------------------ccCCeeEEEEecC--CCEEEEEECCCcEEEcC
Q 008393 536 TA-------------------------------------HEGLIAALAVSTE--TGYVASASHDKFVKLWK 567 (567)
Q Consensus 536 ~~-------------------------------------h~~~V~~l~~spd--g~~l~s~s~Dg~I~iWd 567 (567)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22 8999999999998 78999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=300.82 Aligned_cols=250 Identities=19% Similarity=0.314 Sum_probs=210.7
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC--CeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~--~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iw 356 (567)
..+.+|.+.|.+++|+++|++||+|+.|++|+|||+.+ .+.+.++.+|...|++++|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 4678899999999999999864 8899999999999999
Q ss_pred EcCCCC-ceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 357 DADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 357 d~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
|+.+.. ..+..+.+|...|.+++|+|+. ..++++++.|+.|++||++++....
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------- 137 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------- 137 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-------------------------
Confidence 998743 3556778899999999999972 3466699999999999987642110
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCC-------------CCEEEEEeCC-eEEEEeCCCCCC-CceEEEeecCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GELLASVSED-SVRVWTVGSGSE-GECVHELSCNGN 499 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-------------g~~l~s~s~d-~I~iwd~~~~~~-~~~i~~~~~~~~ 499 (567)
...+.+|...|.+++|+|+ +++|++++.| .|++||++++.. ...+..+.+|..
T Consensus 138 ------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 138 ------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp ------------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred ------------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 0134567788888888886 5799999999 999999987532 225677889999
Q ss_pred ceEEEEEeCCC---CeEEEEEcCCeEEEEECCCCc----EEEe--ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTY---PSLLVIGCYQSLELWNMSENK----TMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~----~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|.+++|+|++ .+|++++.|++|+|||+.+.. ...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 99999999985 789999999999999998743 1222 57888999999999999999999999999995
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=363.44 Aligned_cols=353 Identities=20% Similarity=0.355 Sum_probs=292.6
Q ss_pred CcCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEe-eccC-C-----CCCCCCCccceeccC
Q 008393 204 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHD-D-----TDPRDAGGRGMDVSQ 273 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~-~-----~~~~d~~~~~~~~~~ 273 (567)
....+.|+|||..+++. +.+++||..+++....+... ...+.+. +.++ . .+..|+.+++|+..+
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 34568999999987774 45699999998665444321 1123332 2222 1 345678899999988
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee----------------------------
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---------------------------- 325 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l---------------------------- 325 (567)
+ +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++....+
T Consensus 733 ~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 733 K---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp S---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred c---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence 7 567788899999999999999999999999999999998766543332
Q ss_pred ---------------------------cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 326 ---------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 326 ---------------------------~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
.+|...|.+++|+|++.++++++.||.|++||+.+ +..+..+.+|...|.++
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEE
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEE
Confidence 16788899999999999999999999999999998 77888999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCC----------------------------------------eeeEEEeCCeeEE
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNG----------------------------------------SCTRVFKGGTAQM 418 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~----------------------------------------~~~~~~~~~~~~~ 418 (567)
+|+|++.. +++++.|+.|++||+.+. .........+.++
T Consensus 889 ~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 967 (1249)
T 3sfz_A 889 MFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC 967 (1249)
T ss_dssp EECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEE
T ss_pred EECCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEE
Confidence 99999875 559999999999997531 1111122356788
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-----------
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----------- 486 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----------- 486 (567)
+|+|++..+++++.+|.|.+||+.+++....+.+|...|.+++|+|+|++|++++.| .|++||+.++.
T Consensus 968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v 1047 (1249)
T 3sfz_A 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV 1047 (1249)
T ss_dssp EECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCE
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcE
Confidence 999999999999999999999999999999999999999999999999999999998 99999987541
Q ss_pred --------------------------CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 487 --------------------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 487 --------------------------~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
....+..+..|...+.+++|+|++++|++++.|+.|++||+.++... .+.+|.
T Consensus 1048 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~ 1127 (1249)
T 3sfz_A 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN 1127 (1249)
T ss_dssp EEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCS
T ss_pred EEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCC
Confidence 11233455667888999999999999999999999999999988766 778899
Q ss_pred CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 540 GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.|++++|+|++++|++|+.||.|+|||
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999999999999999999999999996
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=320.88 Aligned_cols=283 Identities=18% Similarity=0.230 Sum_probs=229.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.++.|.++|++++|+|+|++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557889999999999999999999999999999988 7888999999999999999999999999999999999998
Q ss_pred CCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeEEEe----CCeeEEEEecCCCEEEEE
Q 008393 360 NPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFK----GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 360 ~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~---~~~~~~----~~~~~~~~~~~~~~l~~~ 430 (567)
+.. .....+.+|...|.+++|+|++.. +++++.|+.|++||+++++ ....+. ..+.+++|+|++..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 743 256677889999999999999765 4589999999999999886 355554 357899999999999999
Q ss_pred ECCCeEEEEECC------------------CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC-ce
Q 008393 431 AAENVVSILDAE------------------TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-EC 490 (567)
Q Consensus 431 ~~dg~I~i~d~~------------------~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~-~~ 490 (567)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++.| .|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 45667777 899999999999999999999999 9999999887431 22
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE-------------------------------------E
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------------------------------------M 533 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~-------------------------------------~ 533 (567)
+..+..|...+.+++|+|++.+|++++.++.+ +|+...... .
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655555 776652110 0
Q ss_pred ----------------EeccccCCeeEEEEecCC-C---EEEEEECCCcEEEcC
Q 008393 534 ----------------TLTAHEGLIAALAVSTET-G---YVASASHDKFVKLWK 567 (567)
Q Consensus 534 ----------------~~~~h~~~V~~l~~spdg-~---~l~s~s~Dg~I~iWd 567 (567)
....|.+.|+++++.+.. . .|+|||.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 001399999999976544 3 699999999999997
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=311.56 Aligned_cols=280 Identities=21% Similarity=0.345 Sum_probs=248.2
Q ss_pred eeeeeeccCCCCe-EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 278 KEANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 278 ~~~~~l~~h~~~V-~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
.....+++|...| .|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3556889999885 56666 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeee-----------------------EEEe
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCT-----------------------RVFK 412 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~I~iwd~~~~~~~-----------------------~~~~ 412 (567)
|+++ +..+..+.+|...|.+++|++. ...++++++.|+.|++||+.++... ..+.
T Consensus 189 d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCC-CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9998 7788899999999999999852 2457779999999999999987633 2333
Q ss_pred CC-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 413 GG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 413 ~~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
++ ....++++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|++||++++ ++
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~ 344 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 344 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EE
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cE
Confidence 32 2344567889999999999999999999999999999999999999999999999999999 9999999876 78
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+..|...+.++.|+ +.+|++++.||.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 88999999999999997 5789999999999999999988776666888899999999999999998 89999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=302.40 Aligned_cols=244 Identities=23% Similarity=0.404 Sum_probs=218.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------eeeeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
....+..|...|.+++|+|+|.+|++|+.|+.|++|++... .....+..|...|.++.|+|++..|++++.|++
T Consensus 98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~ 177 (354)
T 2pbi_B 98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177 (354)
T ss_dssp EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc
Confidence 34556678889999999999999999999999999998643 345667789999999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 428 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 428 (567)
|++||+++ +..+..+.+|...|.+++|+|+. ..++++|+.||.|++||+++++++..+.. .+.+++|+|++..++
T Consensus 178 v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 256 (354)
T 2pbi_B 178 CALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA 256 (354)
T ss_dssp EEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEE
Confidence 99999998 77888999999999999998853 35777999999999999999999888764 578899999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEecCC--CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 429 AAAAENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
+++.|+.|++||+++.+.+..+..+ ...+.+++|+|+|.+|++++.| .|++||+.++ ..+..+.+|...|.+++
T Consensus 257 s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEE
Confidence 9999999999999999887776643 3578999999999999999999 9999999776 67788889999999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEE
Q 008393 506 FHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd 526 (567)
|+|++.+|++++.|+.|+||+
T Consensus 334 ~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999996
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.14 Aligned_cols=302 Identities=11% Similarity=0.083 Sum_probs=233.6
Q ss_pred CCCCCCccceeccCCcc-ceeeeeeccCCCCeEEEEEcCC------CCeEEEEeCCCcEEEEeCCCCee-----------
Q 008393 260 DPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSD------GKLLATGGHDKKAVLWHTDTLKS----------- 321 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~d------g~~lasg~~dg~I~vwd~~~~~~----------- 321 (567)
...|+.+++|+...+.. +.....+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 45778899999876532 2223457788999999999997 57999999999999999986642
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE--EEcCCCCeEEEEEeCCCcEEE
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL--DFHPNKDDLICSCDGDGEIRY 399 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l--~~~p~~~~li~s~~~dg~I~i 399 (567)
...+.+|...|++++|++++ .|++|+.||+|++||+.+.......+.+|...|.+| +|.+++..+|++|+.|++|++
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 24678899999999999864 899999999999999987555566788999999999 466765468889999999999
Q ss_pred EECCCCeeeEEEeC-----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 400 WSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 400 wd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
||++++++...+.+ .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|+|++|++|+.
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence 99998876655433 2568999999999999999999999999999888888899999999999999999999999
Q ss_pred C-eEEEEeCCCCCCCceEEEee-----cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 475 D-SVRVWTVGSGSEGECVHELS-----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
| +|++||+... .+..+. .....+..++|+|++..+ ....+..+..|+........+.+|...|.+|+|+
T Consensus 418 Dgtv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs 492 (524)
T 2j04_B 418 DGSLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN 492 (524)
T ss_dssp TTEEECCBSCSS----TTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEEC
T ss_pred CCEEEEEechHh----hccccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECC
Confidence 9 9999998643 111111 112246789999999844 2222222333333344445788999999999999
Q ss_pred cCCC---EEEEEECCCcEEEcC
Q 008393 549 TETG---YVASASHDKFVKLWK 567 (567)
Q Consensus 549 pdg~---~l~s~s~Dg~I~iWd 567 (567)
|++. +||+|+.||.|+||+
T Consensus 493 p~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 493 ETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp CSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCCccHHHHhhccCceEEEEE
Confidence 9964 999999999999995
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=301.91 Aligned_cols=250 Identities=21% Similarity=0.384 Sum_probs=210.9
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
..+|...|.+++|+|+|++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 4689999999999999999999999999999998766 46788999999999999999999999999999999999986
Q ss_pred CC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee--eEEEe---CCeeEEEEecCCCEEEEEECC
Q 008393 361 PG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVFK---GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 361 ~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~--~~~~~---~~~~~~~~~~~~~~l~~~~~d 433 (567)
.. ..+..+.+|...|.+++|+|++. +|++++.|+.|++||++++.. ...+. ..+..++|+|++..|++++.|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 43 34667889999999999999976 555999999999999988753 34454 357889999999999999999
Q ss_pred CeEEEEECCC---------------CeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc------e
Q 008393 434 NVVSILDAET---------------QACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE------C 490 (567)
Q Consensus 434 g~I~i~d~~~---------------~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~------~ 490 (567)
+.|++||... .+++..+.+ |...|.+++|++++.+|++++.| .|++|+........ .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 9999999632 244556665 88999999999999999999999 99999987643211 1
Q ss_pred EEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcEE
Q 008393 491 VHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.....+|...|.+++|+|++. +|++++.||.|++|++.+++..
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 223357889999999999984 8999999999999999887654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=305.71 Aligned_cols=294 Identities=22% Similarity=0.313 Sum_probs=237.7
Q ss_pred CcCeEEEecCCCccccC--CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 204 SKPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~--~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
....+.|+|||..+++. ..+++|+..+|+....+....... . +.. . ....
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~-----------------~-------~~~---~-~~~~ 117 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN-----------------K-------DPE---N-LNTS 117 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------------------------------
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccc-----------------c-------ccc---c-cccc
Confidence 34578999999987764 345899998876533222110000 0 000 0 0111
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
....+...|.+++|+|||++||+|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.+
T Consensus 118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~- 196 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT- 196 (393)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-
T ss_pred ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-
Confidence 1224455799999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----------CCeeEEEEecCCCEEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~ 431 (567)
+.....+. +...|.+++|+|....++++|+.|+.|++||++++..+..+. ..+.+++|+|++..+++++
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 55555554 667899999999445577799999999999999998876652 3578899999999999999
Q ss_pred CCCeEEEEECCCC------------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 432 AENVVSILDAETQ------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 432 ~dg~I~i~d~~~~------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
.|+.|++||+++. .+...+.+|...|.+++|++++.+|++++.| .|++||+.++ ..+..+.+|.
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~ 352 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR 352 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCC
Confidence 9999999999763 4566788999999999999999999999999 9999999876 6788889999
Q ss_pred CceEEEEEeC------CCCeEEEEEcCCeEEEEECCCC
Q 008393 499 NKFHSCVFHP------TYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 499 ~~i~~~~~sp------~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
..|.+++|++ ++.+|++++.|+.|+||++...
T Consensus 353 ~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999986 6789999999999999997643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=293.46 Aligned_cols=245 Identities=26% Similarity=0.450 Sum_probs=220.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEECCC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg 434 (567)
.+ +..+..+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+. ..+..++|+|++..+++++.|+
T Consensus 137 ~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 137 KT-GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp TT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CC-CEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 97 677888999999999999999976 55599999999999999998887764 2467899999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeE--EEE-cCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDS--VCW-DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~--l~~-sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
.|++||+++++.+..+.+|...+.+ ..+ .+++.+|++++.| .|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSS
T ss_pred eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcC
Confidence 9999999999999999988765433 233 4678899999999 9999999776 6788899999999999999999
Q ss_pred CeEEEEE--cCCeEEEEECC
Q 008393 511 PSLLVIG--CYQSLELWNMS 528 (567)
Q Consensus 511 ~~l~~~~--~dg~I~iwd~~ 528 (567)
.+|++++ .|+.|++|+..
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 9999987 58999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=304.83 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=245.8
Q ss_pred ccceeeeeeccCCCCeEEEEEcCC---CCeEEEEeCCCcEEEEeCCC-Ceee-eeecccCccEEEEEECCCCCeEEEEeC
Q 008393 275 FSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~d---g~~lasg~~dg~I~vwd~~~-~~~~-~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+++.+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345677889999999999999999 69999999999999999987 5554 788899999999999999999999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEE--cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEE
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 427 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l 427 (567)
||.|++||+.+ +..+. +..|...|.+++| ++++. ++++++.|+.|++||+++++.+..+..+....++......+
T Consensus 107 dg~v~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 107 DKTAKMWDLSS-NQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp TSEEEEEETTT-TEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred CCcEEEEEcCC-CCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 99999999997 44444 5679999999999 77754 56699999999999999999999988877777777777899
Q ss_pred EEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCE----EEEEeCC-eEEEEeCCCCCCCceEEEeecCCC-
Q 008393 428 LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGEL----LASVSED-SVRVWTVGSGSEGECVHELSCNGN- 499 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~----l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~- 499 (567)
++++.++.+.+||++......... .+...+.++++.++... +++++.| .|++||++.......+..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 999999999999999875443332 24456677777665554 8999999 999999987644355666666655
Q ss_pred -----------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 500 -----------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 500 -----------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|.+++|+|++++|++++.||.|++||+.+++.+ .+..|...|.+++|+|++++|++++.|+..+.|
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 6999999999999999999999999999998877 777899999999999999999999998765544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=353.51 Aligned_cols=287 Identities=22% Similarity=0.423 Sum_probs=252.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVW 356 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iw 356 (567)
.+..+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.++++|+.|+.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 5566789999999999999999999999999999999999999999999999999999999 55589999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe------------------------
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------------------ 412 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~------------------------ 412 (567)
|+.+ +..+..+.+|...|.+++|+|++. ++++++.||.|++||+.++.....+.
T Consensus 729 d~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 729 DLNQ-KECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ETTS-SSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ECCC-cchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 9998 677888999999999999999977 55599999999999998776543321
Q ss_pred ----------------------------------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCee
Q 008393 413 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 413 ----------------------------------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
..+..++|+|++..+++++.++.|++||+.++..+..+.+|...|.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 2356788999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC--------------------------ceEE--------EeecCCCceEE
Q 008393 459 SVCWDPSGELLASVSED-SVRVWTVGSGSEG--------------------------ECVH--------ELSCNGNKFHS 503 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~--------------------------~~i~--------~~~~~~~~i~~ 503 (567)
+++|+|+|.+|++++.| .|++|++...... ..+. ........+.+
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999 9999997532100 0000 01123456899
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|+|++.++++++.+|.|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|++||
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999998876 6779999999999999999999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=341.86 Aligned_cols=352 Identities=12% Similarity=0.056 Sum_probs=261.4
Q ss_pred cCeEEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEe-eccCC----CCCCCCCccceeccCCcc
Q 008393 205 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
...+.|++ |..+++ .+.+++||..+++....+. . ...+.++ +.+++ .+..|+.+++|++..+..
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---~----~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---V----PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE---C----SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc---C----CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 44678888 665544 3456999999986554442 1 1224433 22222 245688899999987642
Q ss_pred cee-e-------eeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeeccc------------------C
Q 008393 277 FKE-A-------NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH------------------S 329 (567)
Q Consensus 277 ~~~-~-------~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~h------------------~ 329 (567)
... + ..+++|.+.|++++|+|+ +.+|++|+.||.| +||+.+++.+..+..| .
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence 100 0 346889999999999996 5789999999999 9999999998888765 5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE--e---cc-------------CCCcEEEEEEc----CCCCeE
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT--F---MG-------------HSASVMSLDFH----PNKDDL 387 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~---~~-------------h~~~V~~l~~~----p~~~~l 387 (567)
..|++++|+|++.+|++|+.||+|++||+.+ +..+.. + .. |...|.+++|+ |++..+
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 7799999999999999999999999999987 444432 2 11 34579999995 333356
Q ss_pred EEEEeCC-----CcEEEEE-------------------------------------------------------------
Q 008393 388 ICSCDGD-----GEIRYWS------------------------------------------------------------- 401 (567)
Q Consensus 388 i~s~~~d-----g~I~iwd------------------------------------------------------------- 401 (567)
+++|+.| ..|++|+
T Consensus 291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 6666443 1444444
Q ss_pred ----------CCCCeeeEE-------------------E----------------------eC---CeeEEEEecCCCEE
Q 008393 402 ----------INNGSCTRV-------------------F----------------------KG---GTAQMRFQPHLGRY 427 (567)
Q Consensus 402 ----------~~~~~~~~~-------------------~----------------------~~---~~~~~~~~~~~~~l 427 (567)
+.++..... + .+ .+..++|+|++..+
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 333211100 0 00 01123456788899
Q ss_pred EEEECCCeEEEEECCCCeEE----EE--ec-----CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------
Q 008393 428 LAAAAENVVSILDAETQACR----LS--LQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------- 487 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~----~~--~~-----~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-------- 487 (567)
++++.|++|++||+.++... .. +. +|...|.+|+|+|+|++||+|+.| +|+|||+.+++.
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 99999999999999876321 11 22 788999999999999999999999 999999976521
Q ss_pred ----------------------------------CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 488 ----------------------------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 488 ----------------------------------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..++..+.+|...|++++|+|+| +|++|+.|++|+|||+++...+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 13477888899999999999999 9999999999999999887664
Q ss_pred E------ec-cccCCeeEEEEe-----cCC---CEEEEEECCCcEEEcC
Q 008393 534 T------LT-AHEGLIAALAVS-----TET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~------~~-~h~~~V~~l~~s-----pdg---~~l~s~s~Dg~I~iWd 567 (567)
. +. +|.+.|++|+|+ ||| .+|++|+.|++|++||
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 2 22 889999999999 885 8999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=319.14 Aligned_cols=277 Identities=19% Similarity=0.313 Sum_probs=242.3
Q ss_pred CCeEEEEEcCCCC-eEEEE----------eCCCcEEEEeCCCCe---eeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 288 SKVICCHFSSDGK-LLATG----------GHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 288 ~~V~~l~~s~dg~-~lasg----------~~dg~I~vwd~~~~~---~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
..|.+++|+|+|+ +|++| +.|+.|+|||+.+++ .+..+ .|...|++++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 4678999999997 99999 889999999999876 33333 588999999999999999999999999
Q ss_pred EEEEcCC---CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe------eeEE------EeCCeeEE
Q 008393 354 RVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRV------FKGGTAQM 418 (567)
Q Consensus 354 ~iwd~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~------~~~~------~~~~~~~~ 418 (567)
++||+.+ ....+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++ .... ....+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999986 2347788899999999999999855677799999999999999886 3222 23467899
Q ss_pred EEecC-CCEEEEEECCCeEEEEECCCCeEEEEecCC------CCCeeEEEEcCCC-CEEEEEeCC----eEEEEeCCCCC
Q 008393 419 RFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSG-ELLASVSED----SVRVWTVGSGS 486 (567)
Q Consensus 419 ~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h------~~~V~~l~~sp~g-~~l~s~s~d----~I~iwd~~~~~ 486 (567)
+|+|+ +..+++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.| .|++||++++.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 678888889999999999999999998876 7899999999997 688888877 89999998753
Q ss_pred CCceEEEee-cCCCceEEEEEeC-CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC-CEEEEEECCCc
Q 008393 487 EGECVHELS-CNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKF 562 (567)
Q Consensus 487 ~~~~i~~~~-~~~~~i~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~ 562 (567)
..+..+. .|...+.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3445566 7889999999999 9999999999999999999998877 778999999999999999 89999999999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=298.86 Aligned_cols=276 Identities=16% Similarity=0.252 Sum_probs=242.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-- 363 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-- 363 (567)
|.++|.+++|+|||++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|++||+.+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 567899999999999999998888887777666555555568999999999999999999999 99999999987432
Q ss_pred eeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeEEEeC---CeeEEEEecCCCEEEEEECCCeE
Q 008393 364 SLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 364 ~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
.+..+. +|...|.+++|+|++. ++++++.|+.|++||+.+++ ....+.. .+..++|+|++..+++++.++.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 233333 7999999999999976 45588999999999999887 4444443 46889999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
++||+++++.+..+..|...|.+++|+|++++|++++.| .|++||++++ ..+..+ .+...+.+++|+|++++|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEE
Confidence 999999999999999999999999999999999999999 9999999876 445444 36778999999999999999
Q ss_pred EEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999889999999999999999999999999999999996
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=331.66 Aligned_cols=286 Identities=20% Similarity=0.353 Sum_probs=252.4
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+.+..+.+|.+.|.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 35566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEec--CCCEEEEEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAA 431 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~--~~~~l~~~~ 431 (567)
+.+.......+.+|...|.+++|+|++..++++++.||.|++||+.++.....+. ..+..++|+| ++..+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 9986577888899999999999999445577799999999999999888776665 4578899999 889999999
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
.++.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.| .|++||+.++ ..+..+..+...+.+++|+|++
T Consensus 206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCC
Confidence 99999999999999999999999999999999999999999998 9999999876 6788888889999999999998
Q ss_pred Ce-EEEEEcCCeEEEEECCCCcE----------E----------------------------------EeccccCCeeEE
Q 008393 511 PS-LLVIGCYQSLELWNMSENKT----------M----------------------------------TLTAHEGLIAAL 545 (567)
Q Consensus 511 ~~-l~~~~~dg~I~iwd~~~~~~----------~----------------------------------~~~~h~~~V~~l 545 (567)
.. +++++.++.+.+|++..... + .+..+...+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 75 36677788899998764321 1 112345568899
Q ss_pred EEecCCCEEEEEECCCcEEEcC
Q 008393 546 AVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 546 ~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+|+|++|++++ ||.+.||+
T Consensus 363 ~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 363 AHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp EECTTSSEEEEEE-TTEEEEEE
T ss_pred EECCCCCEEEEec-CCEEEEEE
Confidence 9999999999888 88899985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=303.52 Aligned_cols=279 Identities=18% Similarity=0.329 Sum_probs=239.0
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
....+|...+.+.+++.++..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 33446666644444444446788888999999999999998888775 88999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEEEe---CCeeEEEEecCCCEEEEEECCCe
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+ +..+..+.+|...|.+++|++ .++++++.||.|++||++. ...+..+. ..+.++.|+|++..+++++.|+.
T Consensus 165 ~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 S-QTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp T-CCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C-CeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 7 677888999999999999953 3677999999999999994 55555554 46788999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
|++||+++++.+..+..|...|.+++|+|++ .++++++ .| .|++||+.++ ..+..+. +...+.+++|+|+++
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999976 4666665 56 9999999876 5555554 567899999999999
Q ss_pred eEEEEE--cCCeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIG--CYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~--~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++ .|+.|++||+.++... .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 999965 7999999999987554 4678999999999999999999999999999996
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=303.46 Aligned_cols=298 Identities=18% Similarity=0.353 Sum_probs=244.0
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeec-------------ccCc
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------EHSS 330 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~-------------~h~~ 330 (567)
.+++|+...+ +....+++|.+.|++++|+| ++++||+|+.||.|++||+.+++....+. +|..
T Consensus 24 ~~~v~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 24 TRRVLGLELN---KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHTEEEC---TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cceeeccccC---cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 3456666544 34567788999999999999 99999999999999999999877665543 5999
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC--eEEEEEeCCCcEEEEECCCCee
Q 008393 331 LITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 331 ~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~--~li~s~~~dg~I~iwd~~~~~~ 407 (567)
.|.+++|+| ++.+|++++.||.|++||+.+ +..+..+. +...+.++.|.+.+. .++++++.|+.|++||+++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 999999999 778999999999999999997 55555555 788899999998643 3777999999999999999988
Q ss_pred eEEEeC---CeeEEEEecCCCE-EEEEECCCeEEEEECCCCe-EEEEe---------------cCCCCCeeEEEEcCCCC
Q 008393 408 TRVFKG---GTAQMRFQPHLGR-YLAAAAENVVSILDAETQA-CRLSL---------------QGHTKPIDSVCWDPSGE 467 (567)
Q Consensus 408 ~~~~~~---~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~-~~~~~---------------~~h~~~V~~l~~sp~g~ 467 (567)
+..+.. .+.+++|+|++.. +++++.|+.|++||++++. .+..+ ..|...|.+++|+|+++
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 877764 5788999999985 7889999999999998764 44444 56889999999999999
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEe--ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCee
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA 543 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~ 543 (567)
+|++++.| .|++||+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 338 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence 99999999 9999999887432221110 111112222233344567888899999999999999877 7788999999
Q ss_pred EEEEecCCCEEEEEECCCcEEEcC
Q 008393 544 ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 544 ~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|+|++++|++++.||.|+|||
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEEe
Confidence 999999999999999999999996
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=304.69 Aligned_cols=250 Identities=18% Similarity=0.278 Sum_probs=204.7
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd 357 (567)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+++ .+..+.+|...|++++|++ ++++|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998764 4678899999999999986 488999999999999999
Q ss_pred cCCCC-ceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+.+.. .....+.+|...|.+++|+|++ ..++++|+.|+.|++||++.+....
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-------------------------- 141 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-------------------------- 141 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE--------------------------
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc--------------------------
Confidence 98743 3566788999999999999983 3467799999999999987642110
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCC-----------------CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPS-----------------GELLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-----------------g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
....+.+|...|.+++|+|+ +++|++++.| .|++||++......++..+.+|
T Consensus 142 ----------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 142 ----------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp ----------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred ----------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 01123456666777777765 5789999999 9999999754444567788899
Q ss_pred CCceEEEEEeCCC----CeEEEEEcCCeEEEEECCCC---c--EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 GNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN---K--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~~----~~l~~~~~dg~I~iwd~~~~---~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...|.+++|+|++ .+|++++.|++|+|||+.+. . ...+..|...|.+++|+|++++||+++.||.|+||+
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9999999999987 78999999999999999763 1 124567899999999999999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=307.73 Aligned_cols=250 Identities=21% Similarity=0.404 Sum_probs=216.3
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCccEEEEEECCCC-CeEEEEeC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSF 349 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~ 349 (567)
+....+++|...|.+++|+|+|++||+|+.|+.|++||+.+. .....+.+|...|.++.|.|++ ..|++|+.
T Consensus 99 ~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~ 178 (380)
T 3iz6_a 99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178 (380)
T ss_dssp EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT
T ss_pred ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC
Confidence 345667889999999999999999999999999999998753 2445678999999999999974 57999999
Q ss_pred CCcEEEEEcCCCCceeEEe-----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeEEEeC---CeeEEEE
Q 008393 350 DKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRF 420 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~~~~~~~~~~---~~~~~~~ 420 (567)
|++|++||+.+ +..+..+ .+|...|.+++|++.+..++++|+.|+.|++||++ ....+..+.+ .+.+++|
T Consensus 179 D~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 179 DQTCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp TSCEEEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred CCcEEEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence 99999999998 5566655 67999999999988556688899999999999998 4566666654 5789999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC-------CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK-------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-------~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
+|++..+++++.|+.|++||+++++.+..+..+.. .|.+++|+|+|++|++|+.| .|++||+..+ +.+.
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~ 334 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVL 334 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEE
T ss_pred ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEE
Confidence 99999999999999999999999998888765432 48999999999999999999 9999999776 4454
Q ss_pred Ee----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 493 EL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 493 ~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.+ ..|...|.+++|+|++.+|++++.|+.|+||++...+
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 44 5788999999999999999999999999999998654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=303.53 Aligned_cols=287 Identities=20% Similarity=0.380 Sum_probs=254.9
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
..|+.+++|+..++ +.+..+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.++.|+
T Consensus 136 ~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 136 SDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp ETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--
T ss_pred ECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--
Confidence 45678999998877 5678889999999999998 5699999999999999999999999999999999999995
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQ 417 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~ 417 (567)
+++|++|+.||.|++||+.+ +..+..+.+|...|.+++| ++. ++++++.||.|++||+++++++..+.+ .+.+
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp TTEEEEEETTSEEEEEESSS-CCEEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CcEEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 56899999999999999998 6778888999999999999 444 566999999999999999999988875 3555
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
+.| ++..+++++.|+.|++||+++++.+..+.+|...+.++.++ +++|++++.| .|++||++++ ..+..+..
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~ 357 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQG 357 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECS
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEcc
Confidence 666 78899999999999999999999999999999999988875 6799999999 9999999876 56667765
Q ss_pred ---CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee-----ccccCCeeEEEEecCCCEEEEEECCCc----E
Q 008393 497 ---NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVSTETGYVASASHDKF----V 563 (567)
Q Consensus 497 ---~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~spdg~~l~s~s~Dg~----I 563 (567)
+...|.+++|+ +.+|++++.||.|++||+.+++.+ .+ ..|.+.|.+++|+|++.+|++|+.||. |
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 77889999995 578999999999999999999877 33 378889999999999999999999998 9
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
.|||
T Consensus 436 ~v~d 439 (445)
T 2ovr_B 436 LVLD 439 (445)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=295.07 Aligned_cols=266 Identities=21% Similarity=0.380 Sum_probs=211.3
Q ss_pred CCCCCccceeccCCccceeeeee-cc-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-------CCeeeeeecccCcc
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSV-RA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSL 331 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-------~~~~~~~l~~h~~~ 331 (567)
..|+.+++|+...+ .+.....+ .+ |.+.|.+++|+|++++||+|+.|++|+|||+. +.+.+..+.+|...
T Consensus 31 ~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 31 STDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE 109 (330)
T ss_dssp ESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C
T ss_pred cCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc
Confidence 45678899998764 23344455 44 99999999999999999999999999999985 34567788999999
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--e
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S 406 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~ 406 (567)
|.+++|+|++++|++|+.|++|++||+...+ ..+..+.+|...|.+++|+|++. +|++++.|+.|++||+.++ +
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~ 188 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWE 188 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCee
Confidence 9999999999999999999999999995322 45678889999999999999976 5669999999999999876 5
Q ss_pred eeEEEeC---CeeEEEEecC--CCEEEEEECCCeEEEEECCCC--------eEEEEecC-CCCCeeEEEEcCCCCEEEEE
Q 008393 407 CTRVFKG---GTAQMRFQPH--LGRYLAAAAENVVSILDAETQ--------ACRLSLQG-HTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 407 ~~~~~~~---~~~~~~~~~~--~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~-h~~~V~~l~~sp~g~~l~s~ 472 (567)
++..+.+ .+..+.|+|+ +..+++++.|+.|++||++.+ .+...+.. |...|.+++|++++ +|+++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASV 267 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEE
Confidence 6666654 5678899998 567899999999999998764 45556655 89999999999765 78889
Q ss_pred eCC-eEEEEeCCCCCCCceEEEeecCCC-ceEEEEEeC--CCCeEEEEEcCCeEEEEECCC
Q 008393 473 SED-SVRVWTVGSGSEGECVHELSCNGN-KFHSCVFHP--TYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 473 s~d-~I~iwd~~~~~~~~~i~~~~~~~~-~i~~~~~sp--~~~~l~~~~~dg~I~iwd~~~ 529 (567)
+.| .|+|||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+.+
T Consensus 268 ~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 988 999999875421112223356766 899999999 688999999999999999865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=314.28 Aligned_cols=282 Identities=16% Similarity=0.260 Sum_probs=222.4
Q ss_pred eeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee--eeeecccCccEEEEEECC-CCCeEEEEeCCCcEE
Q 008393 279 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~--~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~ 354 (567)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3455678999999999999 567999999999999999987654 445668999999999998 688999999999999
Q ss_pred EEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE---eCCeeEEEEecCCC-EEE
Q 008393 355 VWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLG-RYL 428 (567)
Q Consensus 355 iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~-~l~ 428 (567)
|||+++ ........ .+...+.+++|++++. +|++|+.||.|++||++.. .+..+ ...+.+++|+|++. .++
T Consensus 191 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 191 LQDFKG-NILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEETTS-CEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EeeccC-CceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEE
Confidence 999986 33222222 2345678999999976 5569999999999999754 33333 34678999999987 466
Q ss_pred EEECCCeEEEEECCCCeEEE---EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC-----
Q 008393 429 AAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN----- 499 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~---~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~----- 499 (567)
+++.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++.| .|+|||+.++. +...+..+..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD---CPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS---SEEEECCCCCCCCSS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc---cceEEeccccccccc
Confidence 77889999999998865433 335699999999999999999999999 99999998763 3333333321
Q ss_pred -ceEEEEEeCCCCeEEEEEc------------CCeEEEEECCCCcEE-E-eccccCCeeEE-EEecCCCEEEEEECCCcE
Q 008393 500 -KFHSCVFHPTYPSLLVIGC------------YQSLELWNMSENKTM-T-LTAHEGLIAAL-AVSTETGYVASASHDKFV 563 (567)
Q Consensus 500 -~i~~~~~sp~~~~l~~~~~------------dg~I~iwd~~~~~~~-~-~~~h~~~V~~l-~~spdg~~l~s~s~Dg~I 563 (567)
.+..+.|++++..++++.. ++.|++||..+++.+ . ...|...|.++ +|+|+|.+|++|+ |+.|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 2334567777777766643 347999999999877 3 34788889887 6999999999876 7899
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
+|||
T Consensus 424 ~iW~ 427 (435)
T 4e54_B 424 LIWS 427 (435)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=294.93 Aligned_cols=266 Identities=14% Similarity=0.199 Sum_probs=221.0
Q ss_pred CCCCCCccceeccCCc----cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEE
Q 008393 260 DPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~----~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i 335 (567)
...|+.+++|++.... .......+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus 45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v 124 (343)
T 2xzm_R 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV 124 (343)
T ss_dssp EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEE
T ss_pred EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 3467789999987542 224567889999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCCCC---------eEEEEEeCCCcEEEEECC
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKD---------DLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~---------~li~s~~~dg~I~iwd~~ 403 (567)
+|+|++++|++++.|++|++||+.. . ...... +|...|.+++|+|++. .++++++.|+.|++||.
T Consensus 125 ~~sp~~~~l~s~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~- 201 (343)
T 2xzm_R 125 AFSPDNRQILSAGAEREIKLWNILG-E-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT- 201 (343)
T ss_dssp EECSSTTEEEEEETTSCEEEEESSS-C-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-
T ss_pred EECCCCCEEEEEcCCCEEEEEeccC-C-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-
Confidence 9999999999999999999999974 2 223332 7889999999999863 46779999999999994
Q ss_pred CCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC-CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEE
Q 008393 404 NGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 479 (567)
Q Consensus 404 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~i 479 (567)
.......+. ..+.+++|+|++..+++++.|+.|++||+.. ......+. +...|.+++|+|++.+|++++++.|++
T Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~i 280 (343)
T 2xzm_R 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKI 280 (343)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEE
T ss_pred CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEE
Confidence 455555554 3578899999999999999999999999954 33333443 456799999999999988777669999
Q ss_pred EeCCCCCCCceEEEee-----------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 480 WTVGSGSEGECVHELS-----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~-----------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
||+.++.... +..+. +|...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 281 w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 281 FNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9998764322 22222 56778999999999999999999999999998654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=299.29 Aligned_cols=268 Identities=22% Similarity=0.410 Sum_probs=230.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+.+|+||++ ++||+|. |++|+|||+.+++....+. +|...|++|+|+|+|++|++|+.||.|+|||+.+ +..+..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEE
Confidence 347999976 4888775 9999999999999877665 6788899999999999999999999999999998 788899
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
+.+|...|.++++++ .++++|+.|+.+++||..... .+..+. ..+..+.+.+++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 377799999999999998754 344444 3567888999999999999999999999987
Q ss_pred Ce----EEEEecCCCCCeeEEEEcCCC-CEEEEE--eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 444 QA----CRLSLQGHTKPIDSVCWDPSG-ELLASV--SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 444 ~~----~~~~~~~h~~~V~~l~~sp~g-~~l~s~--s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
++ .+.....|...|.+++|+|++ .+++++ +.| .|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 355677899999999999965 455554 467 9999999877 56666554 467889999999999988
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|+|.+||||+.|++|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6899999999999887 7889999999999999999999999999999997
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=306.14 Aligned_cols=278 Identities=14% Similarity=0.121 Sum_probs=222.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCC-------cEEEEeCCCCee----------eeeecccCccEEEEEECCCCCeEEEE--
Q 008393 287 TSKVICCHFSSDGKLLATGGHDK-------KAVLWHTDTLKS----------KTNLEEHSSLITDVRFSPSMPRLATS-- 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg-------~I~vwd~~~~~~----------~~~l~~h~~~V~~i~fsp~~~~l~s~-- 347 (567)
.-||+|++|+|||++|++||.+. .|++|++..... ...+..|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997543 599999875432 23466788889888875 4466665
Q ss_pred ---------eCCCcEEEEEcCCCCceeEEe--------ccCCCcEEEEEEcCCCCeEE-EEEeCCCcEEEEECCCCeeeE
Q 008393 348 ---------SFDKTVRVWDADNPGYSLRTF--------MGHSASVMSLDFHPNKDDLI-CSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 348 ---------s~dg~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~~p~~~~li-~s~~~dg~I~iwd~~~~~~~~ 409 (567)
+.|+.+++|++......+... ..+...+.+++|+|||..++ ++++.|++|+|||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 457789999987644433222 23456799999999998775 355679999999999999888
Q ss_pred EEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEE
Q 008393 410 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW 480 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iw 480 (567)
.+. ..+..++|+|++..+++++ ++.+.+|+..+++.+. ....|...|.+++|+|++.++++++.+ .+++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 775 3578999999988877776 5567777777776554 345688899999999999999998755 47788
Q ss_pred eCCCCCC-CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-E-eccccCCeeEEEEecCCCEEEEE
Q 008393 481 TVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 481 d~~~~~~-~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
++..... ......+..+...|++++|+|+|++|++|+.|+.|+|||+.+++.+ . +.+|...|++|+|+|||++||||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 8865422 1234567788999999999999999999999999999999999887 4 46899999999999999999999
Q ss_pred ECCCcEEEcC
Q 008393 558 SHDKFVKLWK 567 (567)
Q Consensus 558 s~Dg~I~iWd 567 (567)
+.|++|+|||
T Consensus 331 S~D~tvrvw~ 340 (365)
T 4h5i_A 331 SAANTIHIIK 340 (365)
T ss_dssp ETTSEEEEEE
T ss_pred eCCCeEEEEE
Confidence 9999999996
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=300.85 Aligned_cols=291 Identities=20% Similarity=0.271 Sum_probs=251.2
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC--
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-- 338 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs-- 338 (567)
..|+.+++|+..++ +.+..+.+|.+.|.+++|++++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 139 s~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 139 ADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred cCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 45678999998877 5778889999999999999988 99999999999999999999999999999999999998
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCc----------------------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGY----------------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~----------------------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
+++.+|++|+.||.|++||+.+... .+..+.+|...|.++... +. ++++++.|+.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~ 291 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GN-IVVSGSYDNT 291 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--TT-EEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--CC-EEEEEeCCCe
Confidence 5778999999999999999986432 255778899999988544 44 5669999999
Q ss_pred EEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe
Q 008393 397 IRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|++||+.+++++..+.+ .+.+++|++++..+++++.|+.|++||+++++++..+.+|...|.+++|+ +.+|++++
T Consensus 292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 99999999999988764 57889999999999999999999999999999999999999999999997 57999999
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE--eccccCCeeEEEEecC
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTE 550 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd 550 (567)
.| .|++||+.++. ..... .+...+..++|++++.+|++++ |+.|++||+.+++.+. +..|...|.+++|+ +
T Consensus 370 ~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 370 ADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G 443 (464)
T ss_dssp TTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred CCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence 99 99999998753 33333 3566778889999999888888 8999999999999884 57889999999997 4
Q ss_pred CCEEEEEECCCcEEEc
Q 008393 551 TGYVASASHDKFVKLW 566 (567)
Q Consensus 551 g~~l~s~s~Dg~I~iW 566 (567)
..++++++.||.+.+|
T Consensus 444 ~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 444 KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TEEEEEEEETTEEEEE
T ss_pred CEEEEEEEeCCeEEEE
Confidence 4556666677766654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=309.86 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=234.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.+++++|+|+|++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.+ +.....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeec
Confidence 3457999999999999999999999999998888777777 4556668899999999999999999999987 6777777
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
.+|...|.+++|+|++. ++++++.|+.|++||+.+++.+..+.+ .+.+++|+|++..+++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 556999999999999999988887764 57889999999999999999999999999999
Q ss_pred EEEEecC---CCCCee---------------------EEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-ecCCC
Q 008393 446 CRLSLQG---HTKPID---------------------SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGN 499 (567)
Q Consensus 446 ~~~~~~~---h~~~V~---------------------~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-~~~~~ 499 (567)
.+..+.. |...|. +++|+|++++|++++.| .|++||++++ ..+..+ ..+..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 333444 45557899999999999 9999999876 344444 45778
Q ss_pred ceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcE--EEecc-ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKT--MTLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~--~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.+++|+|++. +|++++.||.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+||+
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 899999999999 999999999999999998754 35555 6778888865 5788999999999999996
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=329.58 Aligned_cols=285 Identities=18% Similarity=0.311 Sum_probs=254.7
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
++..+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEe---CCeeEEEEec-CCCEEEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK---GGTAQMRFQP-HLGRYLAAA 431 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~---~~~~~~~~~~-~~~~l~~~~ 431 (567)
|+.+ +..+..+.+|...|.+++|+|++.. +++++.||.|++||+.++ .....+. ..+.+++|+| ++..+++++
T Consensus 83 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNT-GEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCC-CcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9998 6778888999999999999999875 458999999999999987 5555554 4578899999 778899999
Q ss_pred CCCeEEEEECCCCeEEEEecCCC-CCeeEEEEcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 432 AENVVSILDAETQACRLSLQGHT-KPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~-~~V~~l~~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.|+.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.| .|++||+.++ ..+..+..|...+.+++|+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEc
Confidence 99999999999887777776654 8899999999 99999999999 9999999776 6788888899999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC--EEEEEECCCcEEEcC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVKLWK 567 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iWd 567 (567)
|++.+|++++.||.|++||+.+++.. .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 99999999999999999999998877 7778889999999999987 455555 55566663
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=309.27 Aligned_cols=276 Identities=17% Similarity=0.319 Sum_probs=228.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-----------eeeeecccC------------ccEEEEEECCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTNLEEHS------------SLITDVRFSPSM 341 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-----------~~~~l~~h~------------~~V~~i~fsp~~ 341 (567)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 468999999999999999999999999999998876 578888998 889999999998
Q ss_pred --CeEEEEeCCCcEEEEEcCCCCce--------------------------------------eEE-eccCCCcEEEEEE
Q 008393 342 --PRLATSSFDKTVRVWDADNPGYS--------------------------------------LRT-FMGHSASVMSLDF 380 (567)
Q Consensus 342 --~~l~s~s~dg~I~iwd~~~~~~~--------------------------------------~~~-~~~h~~~V~~l~~ 380 (567)
.+|++++.|+.|++||+.+.... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998752110 112 3689999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-CeeeEEE----------eCCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeE--
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINN-GSCTRVF----------KGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC-- 446 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~~----------~~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~-- 446 (567)
+|++.. +++| .|+.|++||+++ +..+..+ ...+.+++|+|++ ..+++++.|+.|++||+++++.
T Consensus 186 ~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 999764 4477 799999999994 4444432 3457899999998 8999999999999999999886
Q ss_pred --EEEecCCCC------------CeeEEEEcCCCCEEEEEeCCeEEEEeCCC-CCCCceEEEeecCCCc-----------
Q 008393 447 --RLSLQGHTK------------PIDSVCWDPSGELLASVSEDSVRVWTVGS-GSEGECVHELSCNGNK----------- 500 (567)
Q Consensus 447 --~~~~~~h~~------------~V~~l~~sp~g~~l~s~s~d~I~iwd~~~-~~~~~~i~~~~~~~~~----------- 500 (567)
+..+..|.. .|.+++|+|+|++|++++.+.|++||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 778888876 89999999999999999888999999986 4 445555555421
Q ss_pred ----eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccc---------------------------------cCCee
Q 008393 501 ----FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH---------------------------------EGLIA 543 (567)
Q Consensus 501 ----i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h---------------------------------~~~V~ 543 (567)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 23489999999999999999999999999987765433 35688
Q ss_pred EEEEecCCCEEEEEECCCcEEEc
Q 008393 544 ALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 544 ~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.++|+|++.+||+++.|+ +++|
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998876 6666
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=295.27 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=216.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVR 354 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~ 354 (567)
..+.+|.+.|++++|+|++++||+|+.||.|++||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 56777889999999999999 699999999999999
Q ss_pred EEEcCCCC--------ceeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEE-------------
Q 008393 355 VWDADNPG--------YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF------------- 411 (567)
Q Consensus 355 iwd~~~~~--------~~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~------------- 411 (567)
+||+.+.. ..+..+.+|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998743 457788899999999999998 65 5558999999999999987754332
Q ss_pred ---eCCeeEEEEecC---CCEEEEEECCCeEEEEECCCCeE--EEEecCCCCCeeEEEEcCCC----CEEEEEeCC-eEE
Q 008393 412 ---KGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVR 478 (567)
Q Consensus 412 ---~~~~~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~V~~l~~sp~g----~~l~s~s~d-~I~ 478 (567)
...+.++.|+|+ +..+++++.++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++++.| .|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 235678999997 88999999999998888888765 77888999999999999998 899999999 999
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE----cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG----CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 553 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~----~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 553 (567)
+||++.+.. ...............+.+....+..+. ....+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999986532 222222222333333444433333333 2334555555555544 67789999999999999999
Q ss_pred EEEEECCCcEEEcC
Q 008393 554 VASASHDKFVKLWK 567 (567)
Q Consensus 554 l~s~s~Dg~I~iWd 567 (567)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=303.19 Aligned_cols=270 Identities=23% Similarity=0.474 Sum_probs=240.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.+....+|...|+|++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 34445578888999988 7899999999999999999999999999999999999999 7889999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---EEEeC---CeeEEEEecCCCEEEEEEC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKG---GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~~~~~---~~~~~~~~~~~~~l~~~~~ 432 (567)
.+ +..+..+.+|...|.+++|+++ ++++|+.||.|++||+.++... ..+.+ .+.++.+ ++..+++++.
T Consensus 201 ~~-~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NT-GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SS-CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CC-CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 98 6778899999999999999743 6779999999999999987755 33333 4556666 7789999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
|+.|++||+++++.+..+.+|...|.+++|+ +.+|++++.| .|++||++++ .++..+..|...+.+++| ++.
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSS
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCC
Confidence 9999999999999999999999999999994 7899999999 9999999876 788889999999999998 788
Q ss_pred eEEEEEcCCeEEEEECCCCc---------EE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENK---------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~---------~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.||.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 99999999999999997654 33 78899999999999 788999999999999997
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=296.20 Aligned_cols=275 Identities=15% Similarity=0.138 Sum_probs=236.3
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---eeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 355 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~i 355 (567)
+....+|.+.|++++|+|++++|++++.|+.|+||++.+++ ....+..|...|.+++|+|+++ +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998876 3455668999999999999999 9999999999999
Q ss_pred EEc-CCCCceeEEecc--CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------CeeeEEE--eCCeeEEEEe
Q 008393 356 WDA-DNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVF--KGGTAQMRFQ 421 (567)
Q Consensus 356 wd~-~~~~~~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~---------~~~~~~~--~~~~~~~~~~ 421 (567)
||+ .+. ....+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+ ...+.++.|+
T Consensus 84 wd~~~~~--~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSP--SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSS--SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCC--ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 763 3377788 999999999999 55 566999999999999987 5544443 4567888898
Q ss_pred cCCCEEEEEECCCeEEEEECCC-Ce--EEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCC---CCceEEE
Q 008393 422 PHLGRYLAAAAENVVSILDAET-QA--CRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS---EGECVHE 493 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~-~~--~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~---~~~~i~~ 493 (567)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++++|++++.| .|++|++.... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 876 99999999999999998 43 4445567889999999999 99999999999 99999997651 0245556
Q ss_pred eecCCC---------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eeccc-cCCeeEEEEecCCCEEEEEECCCc
Q 008393 494 LSCNGN---------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 494 ~~~~~~---------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
+..+.. .|.+++|+|++++|++++.||.|++||+.+++.+ .+..| ...|.+++ |++++|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666654 8999999999999999999999999999998877 67787 99999999 99999999999998
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=314.40 Aligned_cols=293 Identities=18% Similarity=0.295 Sum_probs=257.3
Q ss_pred CCCccceeccCCc-cceeeeeeccCCCC-eEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC--------eeeeeecccCc
Q 008393 263 DAGGRGMDVSQGF-SFKEANSVRASTSK-VICCHFSS--DGKLLATGGHDKKAVLWHTDTL--------KSKTNLEEHSS 330 (567)
Q Consensus 263 d~~~~~~~~~~~~-~~~~~~~l~~h~~~-V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~--------~~~~~l~~h~~ 330 (567)
+..+++|+..++. ..+....+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +....+..|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 4468899988652 22577889999999 99999999 9999999999999999999754 77788889999
Q ss_pred cEEEEEECCCCCeEEEEeCC----CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 008393 331 LITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~ 406 (567)
.|.+++|+|++++|++++.+ +.|++||. +..+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 99999999999999999988 68888883 457788899999999999999988778899999999999999999
Q ss_pred eeEEEeC------CeeEEEEecC-CCEEEEEECCCeEEEEECCCCeEEEEe-c---CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 407 CTRVFKG------GTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSL-Q---GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 407 ~~~~~~~------~~~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~-~---~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.+..+.. .+.+++|+|+ +..+++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++.|
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence 9888764 4678999999 999999999999999999999999998 6 899999999999 99999999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEec
Q 008393 476 -SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 549 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 549 (567)
.|++||++++ +.+..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+ .+.+|...|.+++| |
T Consensus 274 ~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 274 ATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp SEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred CcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence 9999999876 666677665 3567788886 8999999999999999999987766 67788888888888 7
Q ss_pred CCCEEEEEECCCcEEEcC
Q 008393 550 ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iWd 567 (567)
+ |++++.||.|++||
T Consensus 349 ~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 349 P---LISGSYDGRIMEWS 363 (615)
T ss_dssp T---TEEEETTSCEEETT
T ss_pred C---cEEECCCCeEEEEE
Confidence 7 77777778887775
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=282.90 Aligned_cols=268 Identities=22% Similarity=0.390 Sum_probs=227.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+.+|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+++ +..+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEE
Confidence 3579999986 777764 9999999999999887765 6788899999999999999999999999999998 788899
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. .....+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 999999999887764 3677999999999999987643 34443 3567888999999999999999999999987
Q ss_pred Ce----EEEEecCCCCCeeEEEEcCCCC-EE--EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 444 QA----CRLSLQGHTKPIDSVCWDPSGE-LL--ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 444 ~~----~~~~~~~h~~~V~~l~~sp~g~-~l--~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
++ .......+...|.++++++++. ++ ++++.+ .|++||.... .. .....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---AC-LSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CE-EEEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---cc-cccccceeeeeeeeecccccceEE
Confidence 64 3445667888999999999765 33 344556 8999999765 23 333456778999999999999888
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++ .|+.|++||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6899999999999887 7889999999999999999999999999999997
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=294.37 Aligned_cols=245 Identities=20% Similarity=0.346 Sum_probs=215.3
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.+|...|+||+|+|||++||+|+.||.|+|||+.+++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 456788999999999999999999999999999999999999999999999998885 569999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEE---eCCeeEEEEecCCCEEEEE---E
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVF---KGGTAQMRFQPHLGRYLAA---A 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~---~~~~~~~~~~~~~~~l~~~---~ 431 (567)
...+..+.+|...+..+.|.+++.. +++++.|+.|++|+..+++. +..+ ...+..++|+|.+..+++. +
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred ceeeEEecccccceeeeeecCCCCe-eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 7888899999999999999999874 55999999999999987653 2222 3467889999987766543 2
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.|+.|++||+.++++...+..| ..+.++.|+++++.|++++ .| .|+|||+.++ .++..+.+|...|.+++|+|
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 5899999999999999888855 5788999999999888775 56 8999999876 78889999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
+|.+|++++.|++|+|||+.+....
T Consensus 375 dg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSCSSCC
T ss_pred CCCEEEEEecCCeEEEEECCCCCcc
Confidence 9999999999999999999876543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=295.18 Aligned_cols=272 Identities=26% Similarity=0.501 Sum_probs=240.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +.+|++|+.||.|++||
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 455678999997643 255568999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg 434 (567)
+.+ +..+..+.+|...|.++.|++ + .+++|+.||.|++||+.+++.+..+.+ .+.++.+ ++..+++++.|+
T Consensus 186 ~~~-~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AET-GECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCc-CcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 998 778889999999999999973 3 567999999999999999999888765 3556666 788999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.|++||+++++.+..+.+|...|.+++| ++.+|++++.| .|++||++++ .++..+..+...+.++.++ +.+|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 78999999999 9999999876 6788888888888887774 6689
Q ss_pred EEEEcCCeEEEEECCCCcEE-Eecc---ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTM-TLTA---HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~-~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++.||.|++||+.+++.+ .+.. |...|.+++|+ +++|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 4544 88899999995 67999999999999996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=295.41 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=216.6
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~ 354 (567)
.+..+++|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999999999999999999999999998 67788889999999999999987 89999999999999
Q ss_pred EEEcCCCC-ceeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPG-YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (567)
+||+.+.. ..+..+..|...|.+++|+|+ +. ++++++.|+.|++||+.+......
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~--------------------- 140 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP--------------------- 140 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE---------------------
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee---------------------
Confidence 99998732 266778889999999999998 55 566899999999999887532211
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-------------CCCEEEEEeCC-eEEEEeCCCCCCC-ceEEEeec
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSC 496 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-------------~g~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~ 496 (567)
..+..|...|.+++|+| ++.+|++++.| .|++||++++... ..+..+..
T Consensus 141 ----------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 141 ----------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp ----------------EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred ----------------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 13456888999999999 69999999999 9999999876432 45667888
Q ss_pred CCCceEEEEEeCC---CCeEEEEEcCCeEEEEECCCCc----EE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 497 NGNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK----TM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 497 ~~~~i~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~----~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|...|.+++|+|+ +.+|++++.|+.|++||+.++. .. ....|...|.+++|+|++++|++++.||.|+|||
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 9999999999999 8999999999999999999873 22 2335889999999999999999999999999996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=287.30 Aligned_cols=247 Identities=16% Similarity=0.323 Sum_probs=212.7
Q ss_pred cCCCCeEEEEEcCC---CCeEEEEeCCCcEEEEeCCCCe-eeeeecccCccEEEEEE------CCCCCeEEEEeCCCcEE
Q 008393 285 ASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRF------SPSMPRLATSSFDKTVR 354 (567)
Q Consensus 285 ~h~~~V~~l~~s~d---g~~lasg~~dg~I~vwd~~~~~-~~~~l~~h~~~V~~i~f------sp~~~~l~s~s~dg~I~ 354 (567)
+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 78999999999999 7999999999999999999988 88999999999999955 68999999999999999
Q ss_pred EEEcCCCCceeEEeccCCC----cEEEEE----EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEec--
Q 008393 355 VWDADNPGYSLRTFMGHSA----SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQP-- 422 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~----~V~~l~----~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~-- 422 (567)
+||+.+....+..+..|.+ .|.+++ |++++. ++++++.|+.|++||+++++..... ...+..++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 9999985546777766655 899998 567765 5668999999999999999876554 45788999999
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeEEEEe-----cCCCCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCC------
Q 008393 423 -HLGRYLAAAAENVVSILDAETQACRLSL-----QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEG------ 488 (567)
Q Consensus 423 -~~~~l~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~------ 488 (567)
++..+++++.++.|++||+++++....+ .+|...|.+++|+|++. +|++++.| .|++||++.+...
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 8999999999999999999887554433 48999999999999998 89999999 9999999865433
Q ss_pred ----------ceEEEeecCCCceEEEEEeCCCCeEE-EEEcCCeEEEEECCCCcE
Q 008393 489 ----------ECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKT 532 (567)
Q Consensus 489 ----------~~i~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~ 532 (567)
..+..+..|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46788899999999999999999998 799999999999987653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.65 Aligned_cols=276 Identities=15% Similarity=0.246 Sum_probs=232.8
Q ss_pred CeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCC
Q 008393 289 KVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 289 ~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
...+++++|+...+ ++++.||.|+||++... +....+.+|...|++++|+| ++.+|++|+.||.|+|||+.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468899887544 45788999999999654 23456789999999999999 89999999999999999998743
Q ss_pred ------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--e---CCeeEEEEecCCCEEEEEE
Q 008393 363 ------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K---GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 363 ------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~ 431 (567)
..+..+.+|...|.+++|+|++..++++++.|+.|++||+++++.+..+ . ..+.+++|+|++..+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5678889999999999999998778889999999999999999998887 3 3578899999999999999
Q ss_pred CCCeEEEEECCCCeEEEEe-cCCCCC-eeEEEEcCCCCEEEEE---eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 432 AENVVSILDAETQACRLSL-QGHTKP-IDSVCWDPSGELLASV---SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~-~~h~~~-V~~l~~sp~g~~l~s~---s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ +.| .|++||++++........+ .+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEE
Confidence 9999999999999999988 788776 8999999999999999 677 9999999876543333322 4567799999
Q ss_pred EeCCCCeEEEEE-cCCeEEEEECCCCc--EEEec--cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIG-CYQSLELWNMSENK--TMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~-~dg~I~iwd~~~~~--~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 33333 35689999999999998775 567899985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=308.58 Aligned_cols=266 Identities=19% Similarity=0.290 Sum_probs=227.6
Q ss_pred CCCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 336 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~ 336 (567)
..+.|+.+++|++.+... -.....+.+|...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA 479 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence 356788999999876432 234567899999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe---ccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
|+|++++|++|+.|++|+|||+.. ....... .+|...|.+++|+|++. .++++++.|+.|++||++++++...+.
T Consensus 480 ~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 480 FSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeCCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999999999999999999999875 3222222 46889999999999863 467799999999999999999888876
Q ss_pred C---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 413 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 413 ~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+ .+.+++|+|++..+++++.|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++.+.|+|||++++ .
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~ 634 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESK---S 634 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---E
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---C
Confidence 5 478899999999999999999999999999998887764 46899999999999999888779999999876 4
Q ss_pred eEEEeecC-------------------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 490 CVHELSCN-------------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 490 ~i~~~~~~-------------------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
.+..+..+ ...+.+++|+|++++|++++.||.|+|||+..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 44443321 12368899999999999999999999999853
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=286.33 Aligned_cols=264 Identities=14% Similarity=0.251 Sum_probs=227.7
Q ss_pred CCCCccceeccCCccceeeeeecc-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.|+.+++|+..++. ....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| +
T Consensus 111 ~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 185 (401)
T 4aez_A 111 LERNVYVWNADSGS---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--N 185 (401)
T ss_dssp ETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--E
T ss_pred CCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--C
Confidence 45678899988774 3333333 8999999999999999999999999999999999999999999999999999 4
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQ 417 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~ 417 (567)
+.+|++++.||.|++||+......+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+. ..+..
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 679999999999999999966778888999999999999999876 55599999999999999998887775 35789
Q ss_pred EEEecCCCEEEEEE---CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceE
Q 008393 418 MRFQPHLGRYLAAA---AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i 491 (567)
++|+|++..+++.+ .|+.|++||+.+++.+..+. +...|.+++|+|++++|++++ .| .|++||+.++. ....
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~ 342 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQ 342 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeE
Confidence 99999887776655 49999999999999988886 667899999999999999954 67 99999998642 2344
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..+..|...|.+++|+|++.+|++++.||.|++||+.+++.+
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 557789999999999999999999999999999999988766
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=275.94 Aligned_cols=268 Identities=18% Similarity=0.278 Sum_probs=232.7
Q ss_pred CCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
.+.|+.+++|++.+... ......+++|...|.+++|+|+|++|++|+.|+.|++|+............+...+..+.+
T Consensus 57 ~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (340)
T 4aow_A 57 ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136 (340)
T ss_dssp EETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEE
Confidence 45688899999877543 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEeC---
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKG--- 413 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~~--- 413 (567)
++++.+|++++.|+.+++||+...........+|...|..++|++++. .++++++.|+.|++||+.+++.+..+.+
T Consensus 137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 999999999999999999999875555566778999999999988754 4677999999999999999999888764
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE-
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH- 492 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~- 492 (567)
.+.+++|+|++..+++++.|+.|++||+++.+.+..+..+ ..|.+++|+|++.+++++.++.|++||++++ ..+.
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~ 292 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDE 292 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEe
Confidence 5788999999999999999999999999999999888754 6899999999988777666559999999865 3332
Q ss_pred --------EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 493 --------ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 493 --------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
....|...|.+++|+|++++|++++.||.|+|||+.+|+
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 334678889999999999999999999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=287.02 Aligned_cols=262 Identities=17% Similarity=0.243 Sum_probs=225.8
Q ss_pred CCccceeccCCccceeeeeec--cCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 264 AGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
..+++|+..++.....+..+. .|...|++++|+|+ |.+|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 357899988776555555444 37789999999999 679999999999999999999999999999999999999
Q ss_pred CC-CCCeEEEEeCCCcEEEEEcCCCCceeEEe---ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---
Q 008393 338 SP-SMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--- 410 (567)
Q Consensus 338 sp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--- 410 (567)
+| ++.+|++++.||.|++||+.+ +..+..+ .+|...|.+++|+|++.. +++++.||.|++||+++++....
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSADYDLLGEK-IMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTT-TEEEEEECSTTSCSSCEEEEEECTTSSE-EEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeec-CeEEEEecccccccCceeEEEECCCCCE-EEEecCCCCEEEEECCCCccccccce
Confidence 99 899999999999999999997 6667777 689999999999999764 55899999999999998754422
Q ss_pred ----------------------------EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe--------------EEE
Q 008393 411 ----------------------------FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--------------CRL 448 (567)
Q Consensus 411 ----------------------------~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--------------~~~ 448 (567)
....+.+++|+ +..+++++.|+.|++||+.++. .+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 33457788888 6799999999999999998763 478
Q ss_pred EecCCCCCeeEEEEcCC--CCEEEEEeCC-eEEEEeCCCCCCCc-eEEEeecC--CCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 449 SLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEGE-CVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 449 ~~~~h~~~V~~l~~sp~--g~~l~s~s~d-~I~iwd~~~~~~~~-~i~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.+..|...|.+++|+|+ +++|++++.| .|++||+.++.... .+..+..+ ...|.+++|+|++++|++++.||.|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 88899999999999999 9999999999 99999998875433 55567777 6899999999999999999999999
Q ss_pred EEEECCC
Q 008393 523 ELWNMSE 529 (567)
Q Consensus 523 ~iwd~~~ 529 (567)
++||+.+
T Consensus 360 ~iwd~~~ 366 (366)
T 3k26_A 360 WRWDRLR 366 (366)
T ss_dssp EEEEC--
T ss_pred EEEEecC
Confidence 9999853
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=288.82 Aligned_cols=265 Identities=17% Similarity=0.164 Sum_probs=232.3
Q ss_pred CCCCCccceeccCCc---cceeeeeeccCCCCeEEEEEcCC----C---CeEEEEeCCCcEEEEeCCCCee-----eeee
Q 008393 261 PRDAGGRGMDVSQGF---SFKEANSVRASTSKVICCHFSSD----G---KLLATGGHDKKAVLWHTDTLKS-----KTNL 325 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~---~~~~~~~l~~h~~~V~~l~~s~d----g---~~lasg~~dg~I~vwd~~~~~~-----~~~l 325 (567)
..|+.+++|+...+. .+..+..+.+|...|.+++|+++ + ++|++++.||.|++||+.+++. ...+
T Consensus 33 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 112 (397)
T 1sq9_A 33 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 112 (397)
T ss_dssp ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred cCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence 346678899988764 34467888899999999999999 9 9999999999999999998887 8888
Q ss_pred ccc-----CccEEEEEEC----CCCCe-EEEEeCCCcEEEEEcCC------CCceeE-----Ee-------ccCCCcEEE
Q 008393 326 EEH-----SSLITDVRFS----PSMPR-LATSSFDKTVRVWDADN------PGYSLR-----TF-------MGHSASVMS 377 (567)
Q Consensus 326 ~~h-----~~~V~~i~fs----p~~~~-l~s~s~dg~I~iwd~~~------~~~~~~-----~~-------~~h~~~V~~ 377 (567)
..| ...|.+++|+ |++++ |++++.||.|++||+.+ .. .+. .+ ..|...|.+
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 191 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATS 191 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCE
T ss_pred cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceE
Confidence 888 5999999999 99999 99999999999999986 32 223 55 458999999
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEECC---CeEEEEECCCCe
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQA 445 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~ 445 (567)
++|+|++ ++++++.|+.|++||+++++.+..+.. .+.+++|+|++..+++++.+ +.|++||+++++
T Consensus 192 ~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 192 VDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 9999997 677999999999999999998887765 47889999999999999999 999999999999
Q ss_pred EEEEecC-------------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee------cC--------
Q 008393 446 CRLSLQG-------------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS------CN-------- 497 (567)
Q Consensus 446 ~~~~~~~-------------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~------~~-------- 497 (567)
.+..+.+ |...|.+++|+|++++|++++.| .|++||++++ +.+..+. .+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBC
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccc
Confidence 9999998 99999999999999999999999 9999999876 6777887 77
Q ss_pred -------CCceEEEEEeCCC----------CeEEEEEcCCeEEEEECCCCc
Q 008393 498 -------GNKFHSCVFHPTY----------PSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 498 -------~~~i~~~~~sp~~----------~~l~~~~~dg~I~iwd~~~~~ 531 (567)
...|.+++|+|++ ++|++++.|+.|++||+.+++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998763
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=274.27 Aligned_cols=248 Identities=13% Similarity=0.202 Sum_probs=220.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-----Cc
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-----KT 352 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~ 352 (567)
+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.+ +.
T Consensus 65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 3556778999999999999999999999999999999999999999888 88899999999999999999999 99
Q ss_pred EEEEEcCCCCc----------eeEEeccCCC--cEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEEEeC---Cee
Q 008393 353 VRVWDADNPGY----------SLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKG---GTA 416 (567)
Q Consensus 353 I~iwd~~~~~~----------~~~~~~~h~~--~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~~~~---~~~ 416 (567)
|++||+..... .+..+..|.. .+.+++|+|++.. +++++.||.|++||+.+ ...+..+.. .+.
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 99999976332 3445556666 9999999999775 55899999999999998 677777653 578
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---------------eEEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------------SVRVWT 481 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---------------~I~iwd 481 (567)
.++|+|++..+++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++.+ .|++||
T Consensus 223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred EEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 89999999999999999999999999999988887 77899999999999999998866 489999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
+.++ ..+..+..|...|.+++|+|++++|++++.||.|++|++.++.
T Consensus 302 ~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 302 KIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 9776 6788889999999999999999999999999999999998654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=282.12 Aligned_cols=253 Identities=18% Similarity=0.238 Sum_probs=213.8
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
+.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.... +..|...|.+++|+|++++|++++.|+.|++
T Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 36677889999999999999999999999999999999988875544 4679999999999999999999999999999
Q ss_pred EEcCCCCc---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC------------------CCeeeEEEe--
Q 008393 356 WDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN------------------NGSCTRVFK-- 412 (567)
Q Consensus 356 wd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~------------------~~~~~~~~~-- 412 (567)
||++.... ......+|...|.+++|+|++. ++++++.|+.|++||++ .++.+..+.
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 99987442 2334467899999999999876 55589999999999954 567777764
Q ss_pred -CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCC--CC---
Q 008393 413 -GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS--GS--- 486 (567)
Q Consensus 413 -~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~--~~--- 486 (567)
..+..++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|+++.++.|++|++.. +.
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEE
Confidence 357889999999999999999999999999999999999999999999999999999888333999999987 21
Q ss_pred --------------------------CCceE------EEe-ecCCCceEEEEEe-CCC---CeEEEEEcCCeEEEEECCC
Q 008393 487 --------------------------EGECV------HEL-SCNGNKFHSCVFH-PTY---PSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 487 --------------------------~~~~i------~~~-~~~~~~i~~~~~s-p~~---~~l~~~~~dg~I~iwd~~~ 529 (567)
..... ..+ .+|...|.+++|. +++ .+|++++.||.|++||+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 00111 223 3788999999866 666 8999999999999999876
Q ss_pred Cc
Q 008393 530 NK 531 (567)
Q Consensus 530 ~~ 531 (567)
++
T Consensus 362 ~~ 363 (372)
T 1k8k_C 362 LE 363 (372)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=267.20 Aligned_cols=242 Identities=19% Similarity=0.331 Sum_probs=209.8
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.+|...|++++|+|++++||+|+.||.|++||+++++.+..+.+|...+.++.+. +..|++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCC
Confidence 356788999999999999999999999999999999999999999999998877664 569999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----EE---EeCCeeEEEEecCCCEEEE---EE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RV---FKGGTAQMRFQPHLGRYLA---AA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~----~~---~~~~~~~~~~~~~~~~l~~---~~ 431 (567)
...+..+.+|...+..+.|.+++.. +++++.|+.|++||+++++.. .. ..+.+..+.+.+.+..++. ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCE-EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 7888889999999999999999775 559999999999999886532 22 2346778889988776543 33
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.++.|++||........... +...+..++|++++..+++++ .| .|++||++++ +++..+.+|...|++++|+|
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 47899999999988776655 667899999999999888765 56 8999999876 78889999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEECCCC
Q 008393 509 TYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
++++|++++.|++|+|||+.+.
T Consensus 295 dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 295 DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TSSCEEEEETTTEEEEECCSCC
T ss_pred CCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=289.11 Aligned_cols=260 Identities=16% Similarity=0.202 Sum_probs=201.5
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---eeeeecccCccEEEEEECCCCC
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
+++|+...+ .++.+..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|+++
T Consensus 35 i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (377)
T 3dwl_C 35 VELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED 113 (377)
T ss_dssp BCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS
T ss_pred EEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC
Confidence 444444322 124566788999999999999999999999999999999999877 6777889999999999999999
Q ss_pred eEEEEeCCCcEEEEEcCCCCc--eeEEecc-CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------------
Q 008393 343 RLATSSFDKTVRVWDADNPGY--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--------------- 404 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~--~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~--------------- 404 (567)
+|++++.|+.|++||+++... ....+.+ |...|.+++|+|++. ++++++.|+.|++||+..
T Consensus 114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 999999999999999987432 4667777 999999999999976 566999999999999853
Q ss_pred ---CeeeEEE--eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE----EEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 405 ---GSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 405 ---~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
++++..+ ...+.+++|+|++..+++++.|+.|++||+++++. +..+.+|...|.+++|+|++++|++++.+
T Consensus 193 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 193 LPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp CCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred cchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 3334333 23578899999999999999999999999999876 77888999999999999999999999888
Q ss_pred eEEEEeCCCCCC---------------------------C---------ceEEE-------------eecCCCceEEEEE
Q 008393 476 SVRVWTVGSGSE---------------------------G---------ECVHE-------------LSCNGNKFHSCVF 506 (567)
Q Consensus 476 ~I~iwd~~~~~~---------------------------~---------~~i~~-------------~~~~~~~i~~~~~ 506 (567)
.+.+|+...... . ..+.. ...|...|.++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~ 352 (377)
T 3dwl_C 273 SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP 352 (377)
T ss_dssp SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE
T ss_pred cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec
Confidence 666887752210 0 00000 1127888999997
Q ss_pred eCCCC----eEEEEEcCCeEEEEEC
Q 008393 507 HPTYP----SLLVIGCYQSLELWNM 527 (567)
Q Consensus 507 sp~~~----~l~~~~~dg~I~iwd~ 527 (567)
.+... .|++++.||.|+|||+
T Consensus 353 ~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 353 YAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEETTEEEEEEEEETTSEEEEECC
T ss_pred cCCCCCceEEEEeecCCCcEEEecC
Confidence 66543 5999999999999986
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=276.99 Aligned_cols=275 Identities=15% Similarity=0.184 Sum_probs=217.0
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd 357 (567)
.+..+..|.+.|+|++|+|||++||+|+.++ ++||++++++.......+ .+..+.|.++++++ ++++.|++|+|||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3445688999999999999999999998665 789999988776654433 47888899888877 5677889999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCCeeEEEEecCCCEEEEE--ECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGTAQMRFQPHLGRYLAA--AAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg 434 (567)
+.+ +..+..+. |...|.+++|+++. ++ ++ .|+.|++||+.++ +.+..+......+++++ ..++++ +.+|
T Consensus 88 ~~~-~~~~~~~~-~~~~v~~v~~~~~~--~~-~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 88 DVK-KQDVSRIK-VDAPVKDLFLSREF--IV-VS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp TTT-TEEEEEEE-CSSCEEEEEECSSE--EE-EE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTT
T ss_pred CCC-CcEEEEEE-CCCceEEEEEcCCE--EE-EE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCc
Confidence 988 66667666 67799999998762 33 33 3889999999998 66665555445566777 566664 6689
Q ss_pred eEEEEECCCCe----------------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e-EEEEeCCCCCCCceEEEee-
Q 008393 435 VVSILDAETQA----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELS- 495 (567)
Q Consensus 435 ~I~i~d~~~~~----------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~-I~iwd~~~~~~~~~i~~~~- 495 (567)
.|++||++++. ++..+.+|...|.+++|+|+|++|++++.| + |++||++++ +++..+.
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~ 236 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRR 236 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEEC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEc
Confidence 99999999865 267889999999999999999999999999 8 999999876 6778887
Q ss_pred c-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE---Eec---------------------cccCCeeEEEEecC
Q 008393 496 C-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---------------------AHEGLIAALAVSTE 550 (567)
Q Consensus 496 ~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~---------------------~h~~~V~~l~~spd 550 (567)
+ |...|.+++|+|++++|++++.|+.|++||+..+... .+. .+......++|+++
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 4 8999999999999999999999999999999765321 110 11223477999999
Q ss_pred CCEEEEEECCCcEEEcC
Q 008393 551 TGYVASASHDKFVKLWK 567 (567)
Q Consensus 551 g~~l~s~s~Dg~I~iWd 567 (567)
+++|++++.||.+++|+
T Consensus 317 ~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 99999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=266.22 Aligned_cols=258 Identities=17% Similarity=0.259 Sum_probs=224.5
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~f 337 (567)
..|+.+++|+...+ +....+..|...|.+++|+|++++|++|+.||.|++|++... +.+..+.+|...|.++.|
T Consensus 36 ~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (313)
T 3odt_A 36 SRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF 112 (313)
T ss_dssp ETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred EcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence 35667899998665 566778899999999999999999999999999999998654 667888899999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----C
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G 413 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~ 413 (567)
++++|++++.||.|++|| . ...+..+..|...|.+++|.+....++++++.|+.|++|| ..+....+. .
T Consensus 113 --~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~ 185 (313)
T 3odt_A 113 --QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND 185 (313)
T ss_dssp --ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS
T ss_pred --cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc
Confidence 577999999999999999 2 6677888899999999999984345667999999999999 444555444 3
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+..++|++++. +++++.++.|++||+++++.+..+.+|...|.+++|+|++ .|++++.| .|++||++++ +.+.
T Consensus 186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~ 260 (313)
T 3odt_A 186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG---SLKQ 260 (313)
T ss_dssp CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC---CEEE
T ss_pred cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC---ceeE
Confidence 578899999877 9999999999999999999999999999999999999999 57788888 9999999876 6788
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 534 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 534 (567)
.+..+...+.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 261 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 8888999999999999998 7789999999999999877653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=278.80 Aligned_cols=296 Identities=9% Similarity=0.061 Sum_probs=246.2
Q ss_pred CccceeccCC-ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee-----eecccCccEEEEEEC
Q 008393 265 GGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFS 338 (567)
Q Consensus 265 ~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~-----~l~~h~~~V~~i~fs 338 (567)
.+++|..... ..++.+..+..+. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+
T Consensus 100 ~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 100 NEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP 178 (433)
T ss_dssp TTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG
T ss_pred ceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc
Confidence 3455554331 2345566666554 45599999988888888889999999999998887 455889999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--Cee
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTA 416 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~ 416 (567)
+++.++++++.|+.|++||+++ +..+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.. ...
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 257 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR 257 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE
T ss_pred CCCEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce
Confidence 9999999999999999999987 6677788889999999999999998887888899999999999998877654 467
Q ss_pred EEEEecCCCEEEEEE--------CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEE-EEEeCC-eEEEEeCCCCC
Q 008393 417 QMRFQPHLGRYLAAA--------AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~--------~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~d-~I~iwd~~~~~ 486 (567)
.++|+|++..+++++ .|+.|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.+ .|++||+.++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~- 335 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK- 335 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-
Confidence 889999999999888 47899999999998776653 55688999999999755 555667 9999999865
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEc---------------CCeEEEEECCCCcEEEeccccCCeeEEEEecCC
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---------------YQSLELWNMSENKTMTLTAHEGLIAALAVSTET 551 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~---------------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg 551 (567)
+.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++......+...+.+++|+|++
T Consensus 336 --~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 412 (433)
T 3bws_A 336 --KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDN 412 (433)
T ss_dssp --EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred --cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCC
Confidence 4555554 5677899999999999998887 469999999999888555556789999999999
Q ss_pred CEEEEEEC-CCcEEEcC
Q 008393 552 GYVASASH-DKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~-Dg~I~iWd 567 (567)
++|++++. |+.|++|+
T Consensus 413 ~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEE
Confidence 99998875 99999996
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=275.52 Aligned_cols=323 Identities=15% Similarity=0.228 Sum_probs=225.3
Q ss_pred cCeEEEec-CCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceee
Q 008393 205 KPLMMFGT-DGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 280 (567)
Q Consensus 205 ~~~~~~~~-dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 280 (567)
...+.|+| +|..+++. +.+++||..+++....+..... .....
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------------------------------~~~~~ 92 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV---------------------------------CSIGR 92 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE---------------------------------EEECT
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc---------------------------------ccccc
Confidence 34578888 88876663 4568999887643221110000 00001
Q ss_pred eeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC---CCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~---~~~l~s~s~dg~I~iw 356 (567)
....+|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++|
T Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 93 DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred cccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 12356999999999999 78899999999999999999999888877 7778999999985 4499999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEE------------------eCCeeE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF------------------KGGTAQ 417 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~------------------~~~~~~ 417 (567)
|+.+ +..+..+.+|...|.+++|+|++..++++++.||.|++||++++. ++..+ ...+..
T Consensus 172 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 172 DLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp ESSS-SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred eCCC-cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 9997 667788899999999999999998888899999999999998765 33322 345788
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC------CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceE
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i 491 (567)
++|+|++..+++++.|+.|++||+++++....+..+. .....+.....+.+++++..+.|++||+.++ ..+
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~ 327 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQI 327 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEE
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cce
Confidence 9999999999999999999999999987655443321 1122222333444444444449999999876 788
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEec-CCCEEEEEECCCcEEEcC
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iWd 567 (567)
..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+......... ..+.+ ....+.+++.|+.+++|+
T Consensus 328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 889999999999999999999999999999999999998776332222222 22333 334566777899999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=287.29 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=200.5
Q ss_pred eeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 280 ANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++........ .+...+.+++|++++.+|++|+.||.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 345678999999999998 78999999999999999998765544443 344567899999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eCCeeEEEEecCCCEEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ 430 (567)
|++. ..+..+.+|...|.+++|+|++..++++|+.|+.|++||+++.+....+ ...+.+++|+|++..|+++
T Consensus 237 d~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 237 NMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp ESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred ccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 9974 4567788999999999999999989999999999999999887654332 3467889999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCC------CeeEEEEcCCCCEEEEEe------------CC-eEEEEeCCCCCCCceE
Q 008393 431 AAENVVSILDAETQACRLSLQGHTK------PIDSVCWDPSGELLASVS------------ED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~------~V~~l~~sp~g~~l~s~s------------~d-~I~iwd~~~~~~~~~i 491 (567)
+.|+.|++||+.++.....+..|.. .+..+.|++++.+++++. .+ .|++||..++ ..+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~ 391 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMM 391 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEE
Confidence 9999999999999988877776643 234567888777777664 23 6999999877 555
Q ss_pred EEee-cCCCceEEE-EEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 492 HELS-CNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 492 ~~~~-~~~~~i~~~-~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
..+. .|...|.++ +|+|+|.+|++++ |+.|+|||+++++.
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 5553 567777776 6999999887764 88999999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=305.95 Aligned_cols=248 Identities=21% Similarity=0.331 Sum_probs=213.4
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iw 356 (567)
..+.+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999998 66788889999999999999988 8999999999999999
Q ss_pred EcCCCCc--eeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGY--SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~--~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (567)
|+.+ +. .+..+.+|...|.+++|+|+ +. ++++|+.||.|++||++++....
T Consensus 83 d~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~----------------------- 137 (753)
T 3jro_A 83 KEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS----------------------- 137 (753)
T ss_dssp EEET-TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC-----------------------
T ss_pred ECCC-CcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc-----------------------
Confidence 9987 43 66778889999999999998 55 56699999999999998753221
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-------------CCCEEEEEeCC-eEEEEeCCCCCCC-ceEEEeecC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSCN 497 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-------------~g~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~~ 497 (567)
...+.+|...|.+++|+| ++.+|++++.| .|++||++++... ..+..+..|
T Consensus 138 --------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 138 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp --------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred --------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 113456888999999999 58999999999 9999999876432 566778889
Q ss_pred CCceEEEEEeCC---CCeEEEEEcCCeEEEEECCCCc------EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 GNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK------TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...|.+++|+|+ +.+|++++.||.|++||+.++. ......|...|++++|+|++++|++|+.||.|+|||
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 999999999999 8999999999999999999873 224456889999999999999999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=277.51 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=220.6
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---eeeeecc-------------------------------------
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEE------------------------------------- 327 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---~~~~l~~------------------------------------- 327 (567)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999976666 58899999999988 5555543
Q ss_pred -----------------cCccEEEEEECCCCCeE-EEEeCCCcEEEEEcC--CCCceeEEec--cCCCcEEEEEEcCCCC
Q 008393 328 -----------------HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDAD--NPGYSLRTFM--GHSASVMSLDFHPNKD 385 (567)
Q Consensus 328 -----------------h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~--~~~~~~~~~~--~h~~~V~~l~~~p~~~ 385 (567)
|...|++++|+|++++| ++++.||.|+|||+. + +..+..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 899999999999998 5 55666665 5778999999999986
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeE-------EEeCCeeEEEEecC---CCEEEEEECCCeEEEEECCCCeEEEE-ecCCC
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTR-------VFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQACRLS-LQGHT 454 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~ 454 (567)
. |++++.||.|++|++.++.... .....+.+++|+|+ +..+++++.|+.|++||+++++.+.. +.+|.
T Consensus 163 ~-l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 T-VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp E-EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred E-EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 5 4588999999999998876442 33456889999999 88999999999999999999988777 56899
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-------------------------cCCCceEEEEEeC
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------------------------CNGNKFHSCVFHP 508 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-------------------------~~~~~i~~~~~sp 508 (567)
..|.+++|+ ++++|++++.| .|++||+.++ +++..+. .....+..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 99999999999 9999999887 4454444 2345689999999
Q ss_pred CCCeEEEEE-cCCeEEEEEC--CCC---cEE-EeccccCCeeEEEEecCCCEEEEEEC-------CCcEEEc
Q 008393 509 TYPSLLVIG-CYQSLELWNM--SEN---KTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLW 566 (567)
Q Consensus 509 ~~~~l~~~~-~dg~I~iwd~--~~~---~~~-~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iW 566 (567)
++++|++++ .++.|++|++ .++ ..+ .+..| +.|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 333 45566 889999999964 4444432 4557777
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=277.73 Aligned_cols=258 Identities=20% Similarity=0.414 Sum_probs=207.8
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD 239 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE
T ss_pred eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe
Confidence 355667899999999999 788999999999999999999999999999999999999974 5999999999999999
Q ss_pred cCCCCce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEEC
Q 008393 358 ADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 358 ~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 432 (567)
+.+.... ...+.+|...|.+++|. +. ++++|+.||.|++||+++++.+..+.++ +.++.+ ++..+++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~ 314 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 314 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC
Confidence 9874322 26778999999999993 44 6669999999999999999999888754 455555 5789999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC------CceEEEeecCCCceEEEE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCV 505 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~------~~~i~~~~~~~~~i~~~~ 505 (567)
|+.|++||+++++++..+.+|...|.+++| ++.+|++++.| .|++||+.++.. ..++..+..|...|.+++
T Consensus 315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 392 (435)
T 1p22_A 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 392 (435)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE
Confidence 999999999999999999999999999998 78899999999 999999976532 127888899999999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
| ++.+|++++.||.|++||+.+...........++.++.|.
T Consensus 393 ~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 393 F--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp E--CSSCEEECCSSSEEEEEC----------------------
T ss_pred e--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 9 7888999999999999999887765444444455555554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=273.44 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=191.8
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEE-----------eCCCcEEEEeCCCCeeee----e-----ecccCccEEEEEECCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATG-----------GHDKKAVLWHTDTLKSKT----N-----LEEHSSLITDVRFSPSM 341 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg-----------~~dg~I~vwd~~~~~~~~----~-----l~~h~~~V~~i~fsp~~ 341 (567)
.|.+|...|.|++++ ++.+++| +.|+.|++|++.+..... . ...+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 467888888888775 4466654 457889999986543221 1 12345679999999999
Q ss_pred CeEEEEe--CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CC
Q 008393 342 PRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GG 414 (567)
Q Consensus 342 ~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~ 414 (567)
++|++++ .|++|+|||+.+ ...+..+. |...|.+++|+|++.. +++++ ++.+++|+..++..+.... ..
T Consensus 146 ~~la~as~~~d~~i~iwd~~~-~~~~~~~~-~~~~V~~v~fspdg~~-l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSD-LTEKFEIE-TRGEVKDLHFSTDGKV-VAYIT-GSSLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSSE-EEEEC-SSCEEEEETTTCCEEEEECCCCTTEE
T ss_pred CEEEEEECCCCCEEEEeECCC-CcEEEEeC-CCCceEEEEEccCCce-EEecc-ceeEEEEEeccCcceeeeecCCCCCC
Confidence 9987654 689999999998 66666664 7788999999999874 54776 5567788877777654432 23
Q ss_pred eeEEEEecCCCEEEEEECCC----eEEEEECCCCeE----EEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAEN----VVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg----~I~i~d~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
+..++|+|++..+++++.++ .+.+||+..... ...+.+|...|++++|+|+|++||+|+.| .|+|||+.++
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 67889999999999998876 688899877643 35677899999999999999999999999 9999999876
Q ss_pred CCCceEEEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 486 SEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 486 ~~~~~i~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+++..+ .+|...|++++|+||+++|++++.|++|+|||+..+
T Consensus 302 ---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 ---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 677764 689999999999999999999999999999999654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=273.02 Aligned_cols=249 Identities=11% Similarity=0.196 Sum_probs=207.1
Q ss_pred EEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEE
Q 008393 313 LWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 313 vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~ 389 (567)
+|++.+.+....+.+|...|++++|+|++ ++|++|+.||.|+|||+.+ ......+. +|...|.+++|+|++..+++
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 34456677788889999999999999999 8999999999999999997 44444443 69999999999996566778
Q ss_pred EEeCCCcEEEEECCCCeeeEEEe------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc
Q 008393 390 SCDGDGEIRYWSINNGSCTRVFK------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463 (567)
Q Consensus 390 s~~~dg~I~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s 463 (567)
+++.|+.|++||+.+. .+..+. ..+.+++|+|++..+++++.|+.|++||+ +++.+..+.+|...|.+++|+
T Consensus 136 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN 213 (383)
T ss_dssp EEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred EEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence 9999999999999964 444443 34789999999999999999999999999 577888999999999999999
Q ss_pred CCCC-EEEEEeCC-eEEEEeCCCCCC-CceEEEeecCCCceEEEEEeC-CCCeEEEEEcCCeEEEEECCCCcEE-Eeccc
Q 008393 464 PSGE-LLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAH 538 (567)
Q Consensus 464 p~g~-~l~s~s~d-~I~iwd~~~~~~-~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h 538 (567)
|++. +|++++.| .|++||+++... ..++..+ .|...+.+++|+| ++.+|++++.|+.|++||+.+++.. .+..|
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 9999 99999999 999999987543 2445545 6899999999999 9999999999999999999987654 33333
Q ss_pred -------cC----------CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 539 -------EG----------LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 539 -------~~----------~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. .+..++|+|++++ +++.||.|+|||
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence 23 3344666666666 677899999996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=279.81 Aligned_cols=249 Identities=18% Similarity=0.363 Sum_probs=213.9
Q ss_pred eeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCC----------CeeeeeecccCccEEEEEECCCCC-eEEEEe
Q 008393 281 NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMP-RLATSS 348 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~----------~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s 348 (567)
.....|.+.|++++|+|+ +.+||+++.||.|++||+.+ .+....+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455689999999999997 78999999999999999986 678888999999999999999988 999999
Q ss_pred CCCcEEEEEcCCCCc------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEec
Q 008393 349 FDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 422 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (567)
.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++..
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------------- 266 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------------- 266 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------------
Confidence 999999999987322 14567789999999999997777888999999999999986531
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 423 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
.+.+..+..|...|++++|+|++. +|++++.| .|++||+++.. ..+..+..|...
T Consensus 267 ---------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~ 323 (430)
T 2xyi_A 267 ---------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDE 323 (430)
T ss_dssp ---------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSC
T ss_pred ---------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCC
Confidence 012224456889999999999887 78899999 99999998642 467778889999
Q ss_pred eEEEEEeCCCC-eEEEEEcCCeEEEEECCC--------------CcE-EEeccccCCeeEEEEecCCC-EEEEEECCCcE
Q 008393 501 FHSCVFHPTYP-SLLVIGCYQSLELWNMSE--------------NKT-MTLTAHEGLIAALAVSTETG-YVASASHDKFV 563 (567)
Q Consensus 501 i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~--------------~~~-~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~I 563 (567)
|.+++|+|++. +|++++.|+.|+|||+.. ... ....+|...|++++|+|++. +|++++.||.|
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence 99999999996 588899999999999987 133 36678999999999999999 89999999999
Q ss_pred EEcC
Q 008393 564 KLWK 567 (567)
Q Consensus 564 ~iWd 567 (567)
+||+
T Consensus 404 ~iw~ 407 (430)
T 2xyi_A 404 QVWQ 407 (430)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 9996
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=276.23 Aligned_cols=268 Identities=15% Similarity=0.207 Sum_probs=221.8
Q ss_pred CCCCCccceeccCCcc-ceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCcc
Q 008393 261 PRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSL 331 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~ 331 (567)
..++.+++|+..+... ...+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++ +.+..+.+|...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~ 133 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence 4466788998865432 245667889999999999999 9999999999999999999987 667889999999
Q ss_pred EEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEe--ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 332 ITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 332 V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
|.+++|+|++ .+|++++.||.|++||+.+ +..+..+ .+|...|.+++|+|++..+ ++++.|+.|++||+++++.+
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEEEEeCCCCcee
Confidence 9999999998 6999999999999999998 6777788 7899999999999997754 58999999999999999998
Q ss_pred EEE-eCC----eeEEEEecCCCEEEEE---ECCCeEEEEECCCCeE-EEEe-cCCCCCeeEEEEcCCCCEEEEEe-CC-e
Q 008393 409 RVF-KGG----TAQMRFQPHLGRYLAA---AAENVVSILDAETQAC-RLSL-QGHTKPIDSVCWDPSGELLASVS-ED-S 476 (567)
Q Consensus 409 ~~~-~~~----~~~~~~~~~~~~l~~~---~~dg~I~i~d~~~~~~-~~~~-~~h~~~V~~l~~sp~g~~l~s~s-~d-~ 476 (567)
..+ ..+ +..+.|++++..++++ +.++.|++||+++++. +... ..|...|.+++|+|++++|++++ .| .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 887 332 5789999997777777 5799999999998653 2222 24778899999999999997554 57 9
Q ss_pred EEEEeCCCCCC-CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 477 VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 477 I~iwd~~~~~~-~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.++...
T Consensus 292 i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999987643 22333333 5688999999999987664 5669999999887653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=261.26 Aligned_cols=224 Identities=21% Similarity=0.305 Sum_probs=174.9
Q ss_pred eeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCC--CCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~ 352 (567)
.+..+.+|.++|.+++|++ ++++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.
T Consensus 45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 4567889999999999986 48999999999999999998874 56678889999999999997 889999999999
Q ss_pred EEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE
Q 008393 353 VRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 353 I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (567)
|++||+.+... ....+.+|...|.+++|+|++.... +. . ...+++..+++++
T Consensus 125 v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~------~~--------~-------------~~~~~~~~l~sgs 177 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED------GE--------H-------------NGTKESRKFVTGG 177 (297)
T ss_dssp EEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------------------------------------CCEEEEEE
T ss_pred EEEEEecCCCceeeeeeecccCccceEeecCCccccc------cc--------C-------------CCCCCcceEEEEc
Confidence 99999987432 2466789999999999999742100 00 0 0011234555666
Q ss_pred CCCeEEEEECCCCe----EEEEecCCCCCeeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEe--ecCCCce
Q 008393 432 AENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHEL--SCNGNKF 501 (567)
Q Consensus 432 ~dg~I~i~d~~~~~----~~~~~~~h~~~V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~--~~~~~~i 501 (567)
.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.| +|+|||++..........+ ..+...+
T Consensus 178 ~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v 257 (297)
T 2pm7_B 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (297)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE
Confidence 66666666655443 456788999999999999985 899999999 9999999764322222233 4567889
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
.+++|+|++++|++++.|+.|+||+...
T Consensus 258 ~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 258 WRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999999999763
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=287.03 Aligned_cols=261 Identities=16% Similarity=0.230 Sum_probs=215.7
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee-cccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCC---CC--ceeE
Q 008393 294 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN---PG--YSLR 366 (567)
Q Consensus 294 ~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l-~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~---~~--~~~~ 366 (567)
.|+++++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+ .. ....
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888887765 387 467888888 89999999999999 999999999999999999865 22 1123
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCeeeEEEeC---------------CeeEEE--EecCCCE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFKG---------------GTAQMR--FQPHLGR 426 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~---~~~~~~~~~~---------------~~~~~~--~~~~~~~ 426 (567)
.+ +|...|.+++|+|++. ++++++.||.|++||+. +++....+.. .+.++. +++++..
T Consensus 107 ~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 33 5999999999999876 55599999999999995 5555443331 123333 4577889
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFH 502 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~ 502 (567)
+++++.|+.|++||+++++.+..+.+ |...|++++|+|++++|++++.| .|++||++++ .++..+. .+...|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceE
Confidence 99999999999999999999999988 88999999999999999999999 9999999875 6777765 6777899
Q ss_pred EEEEeC----CCCeEEEEEcCCeEEEEECCCCcEE-Eecc--------------------------ccCCeeEEEEecCC
Q 008393 503 SCVFHP----TYPSLLVIGCYQSLELWNMSENKTM-TLTA--------------------------HEGLIAALAVSTET 551 (567)
Q Consensus 503 ~~~~sp----~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--------------------------h~~~V~~l~~spdg 551 (567)
+++|+| ++.+|++++.|+.|++||+.+++.. .+.+ |...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 996654 6779999999999999999988755 2222 66779999999 78
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
++|++|+.||.|++||
T Consensus 341 ~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 341 KILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred eEEEecCCCCeEEEEE
Confidence 8999999999999996
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=284.21 Aligned_cols=305 Identities=10% Similarity=0.097 Sum_probs=231.8
Q ss_pred cCeEEEecCCCccccCCCc-eeeeCCCcchhhcccccccCCCCCCceEEe-eccCCCCCCCCCccceeccCCccceeeee
Q 008393 205 KPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPRDAGGRGMDVSQGFSFKEANS 282 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~~~-~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 282 (567)
...+.|+|||...++++.. .+=|...++ .+. .....+... +.+++ ..+.|+++++. ....
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~d~~~~~---~l~------gh~~~v~~V~FsPdg------~~~~~~~~~~~---~~~~ 79 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIGQPKYAK---DIN------CNSKNLFHVKEFPLE------FENKLDFELAQ---QNGL 79 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEEEECCCS---CCS------SBGGGTEEEEEECCC------CCCTTTTSCCC---SSCS
T ss_pred EEEEEECCCCCEEEEEcCCceeecccccc---eec------CCCccEEEEEECCCC------CcceEEEEeCC---CceE
Confidence 4568999999998887655 222444332 221 111222222 33333 34455554432 1122
Q ss_pred ec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc-----cEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 283 VR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 283 l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~-----~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+. .|...|.+++|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+||
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 22 5588999999999999999999999999999654 666667 665 59999999999999999999999999
Q ss_pred EcCCCCc------eeEEe----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---EEEe----CCeeEEE
Q 008393 357 DADNPGY------SLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFK----GGTAQMR 419 (567)
Q Consensus 357 d~~~~~~------~~~~~----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~~~~----~~~~~~~ 419 (567)
|+.++.. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+..+... ..++ ..+..++
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9997432 35665 6788899999999997 457888999999999987742 3442 3478899
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEE--cCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW--DPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~--sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|+ +..+++++ ++.|++||+.+++......+|...|..++| +|++..|++++++ + ++|.+.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------- 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------- 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------------
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------------
Confidence 99 56666665 799999999999885444489999999999 9999999999989 7 999985
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
.+.++|++..++.. |+++++|+...+....+ .+...|.+++|+|||+.+|+++.
T Consensus 297 ------~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ------ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ------SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ------cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 14699999866664 89999999876664434 34677999999999999998874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=293.45 Aligned_cols=253 Identities=10% Similarity=0.050 Sum_probs=196.5
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeee----eeecccCccEEEEEECCC------CCeEEEEeCCCcEEEEEcCCCCc---
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPS------MPRLATSSFDKTVRVWDADNPGY--- 363 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~----~~l~~h~~~V~~i~fsp~------~~~l~s~s~dg~I~iwd~~~~~~--- 363 (567)
|++++|++++.|++|+|||+.+++.. ..+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.....
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 34444555678899999999877643 446778899999999996 57999999999999999986321
Q ss_pred -------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe---CCeeEE--EEecCC-CEEEE
Q 008393 364 -------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQM--RFQPHL-GRYLA 429 (567)
Q Consensus 364 -------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---~~~~~~--~~~~~~-~~l~~ 429 (567)
....+.+|...|++++|++++ .|++|+.||+|++||++++. ....+. ..+.++ .|++++ ..+++
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 234778899999999999863 57799999999999999764 334444 456777 467776 78899
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCC--CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
++.|++|+|||++++++...+.+|.. .|.+++|+|++..|++++.| +|++||++++ .++..+.+|...|.+++|
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGV 405 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEEC
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEEe
Confidence 99999999999999877666666653 58899999999999999999 9999999876 566677889999999999
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEEEecc-----ccCCeeEEEEecCCCEE
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTMTLTA-----HEGLIAALAVSTETGYV 554 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-----h~~~V~~l~~spdg~~l 554 (567)
+|++++|++|+.|++|++||+..+....... +...|.+++|+|+++.+
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999987642212111 11247799999999855
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=274.27 Aligned_cols=264 Identities=10% Similarity=0.060 Sum_probs=211.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC--------Cce
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP--------GYS 364 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~--------~~~ 364 (567)
..+..++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.... ...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455678899999999999999999999888887 566888889988 999999999999977631 222
Q ss_pred eEEe-ccCCCcEEEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEECCCeEE
Q 008393 365 LRTF-MGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 365 ~~~~-~~h~~~V~~l~~~p--~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
+..+ .+|...|.+++|+| ++. ++++++.||.|++||+++++++..+.. .+.+++|+|++..+++++.|+.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 3333 36778999999999 866 556999999999999999998766532 478999999999999999999999
Q ss_pred EEECCCCeEE-EEecC-CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCce--EEEEEeCCCCeE
Q 008393 438 ILDAETQACR-LSLQG-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHPTYPSL 513 (567)
Q Consensus 438 i~d~~~~~~~-~~~~~-h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i--~~~~~sp~~~~l 513 (567)
+||+++++.+ ..+.. |...|.+++|+|+|.+|++++++.|++||+++......+..+..+...+ .+++|+|++++|
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 9999999877 78888 9999999999999999999996699999998875444343333333333 469999999999
Q ss_pred EEEEc-CCeEEEEECCCCcEE-EeccccCCeeEEEEec---CCCEEEEEECCCcEEEc
Q 008393 514 LVIGC-YQSLELWNMSENKTM-TLTAHEGLIAALAVST---ETGYVASASHDKFVKLW 566 (567)
Q Consensus 514 ~~~~~-dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iW 566 (567)
++++. ++.|++|++.+.... .. .++..++|.+ +...|++++.||.++++
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 99998 999999999765432 22 5567777877 77888888888888765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=280.81 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=210.5
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-...|.+++|+|||+++|+++.|++|+ |...+ ..+++|...|.+++|+|+| .++.+.+|+.+. ..+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~--~~~ 79 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ--NGL 79 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS--SCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCC--ceE
Confidence 357889999999999999999999999 64444 4558999999999999998 566666665442 112
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-------CeeEEEEecCCCEEEEEECCCeEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
..+ .|...|.+++|+|+|..+ ++++.||.|++||... ++..+.. .+.+++|+|++..+++++.||.|++
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~L-As~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWM-AVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCE-EEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eec-CCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 222 468899999999998755 5899999999999654 4444432 2778999999999999999999999
Q ss_pred EECCCCe-------EEEEe----cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-ecCCCceEEEE
Q 008393 439 LDAETQA-------CRLSL----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCV 505 (567)
Q Consensus 439 ~d~~~~~-------~~~~~----~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~ 505 (567)
||+.++. .+.++ .+|...|.+++|+|+| +++++.| .|++||+..+.......++ ..|...|.+++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9999885 35666 6788899999999999 7777778 9999999876432344556 36778999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEEE-eccccCCeeEEEE--ecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAV--STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iWd 567 (567)
|+ +.+|++++ ++.|++||+.+++... ..+|...|..++| +|++..|+++++||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 6999999999998854 4489999999999 999999999999999 8884
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=279.29 Aligned_cols=282 Identities=13% Similarity=0.215 Sum_probs=222.7
Q ss_pred cCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 205 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
...+.|+++|..+++. +.+++||..++..... .....++...
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------------------------~~~~~~~~~~ 75 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------------------------HSRGEYNVYS 75 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------------------------CCCCCEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------------------------ccccceeEec
Confidence 4468899999887764 4568898876532100 0012345667
Q ss_pred eeccCC------------CCeEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCeee-------------------------
Q 008393 282 SVRAST------------SKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSK------------------------- 322 (567)
Q Consensus 282 ~l~~h~------------~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~~~~~~------------------------- 322 (567)
.+.+|. +.|.+++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 76 ~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (447)
T 3dw8_B 76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155 (447)
T ss_dssp EEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCC
T ss_pred ccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEec
Confidence 788888 889999999998 79999999999999998764432
Q ss_pred --------------ee-ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE-------EeccCCCcEEEEEE
Q 008393 323 --------------TN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVMSLDF 380 (567)
Q Consensus 323 --------------~~-l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~ 380 (567)
.. +.+|...|.+++|+|++++|++| .|+.|++||+......+. .+.+|...|.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (447)
T 3dw8_B 156 VFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF 234 (447)
T ss_dssp EEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred cccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE
Confidence 12 46899999999999999999998 899999999985344444 25689999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCee----eEEEeC---------------CeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKG---------------GTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~~---------------~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
+|++..++++|+.||.|++||+++++. +..+.. .+.+++|+|++..+++++. +.|++||+
T Consensus 235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~ 313 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDL 313 (447)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEET
T ss_pred CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeC
Confidence 999856777999999999999999886 566654 5788999999999999888 99999999
Q ss_pred CC-CeEEEEecCCCCC---------------eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee---------
Q 008393 442 ET-QACRLSLQGHTKP---------------IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------- 495 (567)
Q Consensus 442 ~~-~~~~~~~~~h~~~---------------V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~--------- 495 (567)
++ ++++..+.+|... +..++|+|++++|++++.| .|++||+.++.. + .+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~ 389 (447)
T 3dw8_B 314 NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPR 389 (447)
T ss_dssp TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTT
T ss_pred CCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccc
Confidence 97 8888888887532 3349999999999999999 999999987632 2 111
Q ss_pred ------------------------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 496 ------------------------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 496 ------------------------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.....|..++|+|++++|++++.++ +++|..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 390 TVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2234688899999999888887765 8888654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-29 Score=257.71 Aligned_cols=260 Identities=12% Similarity=0.147 Sum_probs=218.6
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|++++| ++++.|+.|++||+.+ +..+..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-Cccce
Confidence 3678888999999999999999999987765 8999999999977 6677899999999987 66666666554 89999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEE-EEECCCeEEEEECCCCeEEEEecCCCC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTK 455 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h~~ 455 (567)
+|+|+++.+++++..++.|++||+.+++.+..+.. ....++|+|++..++ +++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 99999998888888889999999999998877764 467889999999884 5556899999999999998888765 4
Q ss_pred CeeEEEEcCCCCEE-EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE---cCCeEEEEECCCC
Q 008393 456 PIDSVCWDPSGELL-ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSEN 530 (567)
Q Consensus 456 ~V~~l~~sp~g~~l-~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~I~iwd~~~~ 530 (567)
.+.+++|+|++++| ++++.+ .|++||++++ ..+..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 57999999999987 455666 9999999876 4555544 456789999999999999998 6899999999998
Q ss_pred cEEEeccccCCeeEEEEecCCCEE-EEEECCCcEEEcC
Q 008393 531 KTMTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 567 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iWd 567 (567)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 877443334468999999999987 5678899999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=254.42 Aligned_cols=266 Identities=13% Similarity=0.167 Sum_probs=219.2
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.+..+++|+..++ +.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+
T Consensus 10 ~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 10 ESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp TTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred CCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence 4567899998877 4556666665 48999999999977 667789999999999999999888666 8999999999
Q ss_pred CCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeE
Q 008393 341 MPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQ 417 (567)
Q Consensus 341 ~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~ 417 (567)
+++|++++ .++.|++||+.+ +..+..+.. ...+.+++|+|+++.++++++.|+.|++||+.+++.+..+.. ....
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 162 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTS-NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCC-CeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence 99886554 679999999997 566666654 457899999999988878999999999999999998887764 4678
Q ss_pred EEEecCCCEEEE-EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe---CC-eEEEEeCCCCCCCceEE
Q 008393 418 MRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 418 ~~~~~~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~d-~I~iwd~~~~~~~~~i~ 492 (567)
++|+|++..+++ +..++.|++||+++++.+..+. +...+.+++|+|++++|++++ .+ .|++||+.++ +.+.
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~ 238 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA 238 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEE
Confidence 899999988854 4568999999999998887776 456789999999999998887 46 9999999876 5666
Q ss_pred EeecCCCceEEEEEeCCCCeEE-EEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
.+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++.. .+..|.
T Consensus 239 ~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 239 RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 66654 4578899999999885 4567899999999998876 444443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=260.20 Aligned_cols=227 Identities=20% Similarity=0.296 Sum_probs=177.9
Q ss_pred eeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCC--CCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~ 352 (567)
.+..+++|.+.|.+++|++ ++++|++|+.|++|++||+.++ +....+.+|...|.+++|+|+ +.+|++|+.|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 4567889999999999986 4899999999999999999887 456778899999999999998 789999999999
Q ss_pred EEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEE
Q 008393 353 VRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 353 I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (567)
|++||+..... ....+.+|...|.+++|+|+... +. + .+...+. ....+..++++
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~~----~--~~~~~~~-------------~~~~~~~l~sg 185 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP----GS----L--IDHPSGQ-------------KPNYIKRFASG 185 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----------------CCSC-------------CCCCCCBEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCC----cc----c--ccccccc-------------CccccceEEEe
Confidence 99999987432 24556789999999999997421 00 0 0000000 01123466777
Q ss_pred ECCCeEEEEECCCC---eEEEEecCCCCCeeEEEEcCCC----CEEEEEeCC-eEEEEeCCCCCCC-ceEEEeecCCCce
Q 008393 431 AAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGNKF 501 (567)
Q Consensus 431 ~~dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g----~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~~~~~i 501 (567)
+.|+.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.| +|++|++.+.... .....+..+...|
T Consensus 186 s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v 265 (316)
T 3bg1_A 186 GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV 265 (316)
T ss_dssp BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE
T ss_pred cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE
Confidence 77777777777644 4566788999999999999986 899999999 9999999763211 1223445678899
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+++|+|++.+|++++.|+.|+||+..
T Consensus 266 ~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 266 WHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999999975
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=270.89 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-----eeecccCccEEEEEECC--------CCCeEEEEe
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSP--------SMPRLATSS 348 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-----~~l~~h~~~V~~i~fsp--------~~~~l~s~s 348 (567)
....|...+....+++++.+||+|+.|++|+|||+.++... ..+.+|.+.|++|+|+| ++++||+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 34456667777778888999999999999999999887643 34679999999999997 788999999
Q ss_pred CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEE
Q 008393 349 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 428 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (567)
.|++|+|||+.+ ...+..+.+|...|.+++|+|++..++++++.|+.|++||+++++........... .
T Consensus 164 ~D~tv~~Wd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~----- 232 (393)
T 4gq1_A 164 DDCTLIIWRLTD-EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----K----- 232 (393)
T ss_dssp TTSEEEEEEEET-TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C-----S-----
T ss_pred CCCeEEEEECCC-CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----c-----
Confidence 999999999987 55666777899999999999998888889999999999999988765443221000 0
Q ss_pred EEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc-CCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce-----
Q 008393 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF----- 501 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s-p~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i----- 501 (567)
...+.-++...........+|...|.++.|+ ++++.|++++.| .+++||+..+.... .+..+...+
T Consensus 233 ----~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 233 ----NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNL 305 (393)
T ss_dssp ----CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CC
T ss_pred ----cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEE
Confidence 0000111111112222345688999999987 799999999999 99999998763322 222222211
Q ss_pred -------------EEEEEeC-CCC-eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 502 -------------HSCVFHP-TYP-SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 502 -------------~~~~~sp-~~~-~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
..+.|++ .+. ++++++.|+.|++||+.+++.. ....|...|.+++|+|||++||++++||.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 1223333 333 4556677999999999988766 66788999999999999999999998875
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=262.26 Aligned_cols=244 Identities=10% Similarity=0.029 Sum_probs=201.6
Q ss_pred eeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCC--CCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTD--TLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~--~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+|.+.|.+++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+|++++|++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 456788899999999999996 899999999999999 888888887 567899999999999999999999999999
Q ss_pred EcCCCCc---eeEEeccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEE
Q 008393 357 DADNPGY---SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRY 427 (567)
Q Consensus 357 d~~~~~~---~~~~~~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l 427 (567)
++.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. ..+.+++|+ ++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 9987332 22367789999999999998 23466699999999999999998877633 457889999 99999
Q ss_pred EEEECCCeEEEEECCCCeEEEEecC-------------------------CCCCeeEEEEcCCCCEEEEEe-CC-eEEEE
Q 008393 428 LAAAAENVVSILDAETQACRLSLQG-------------------------HTKPIDSVCWDPSGELLASVS-ED-SVRVW 480 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~-------------------------h~~~V~~l~~sp~g~~l~s~s-~d-~I~iw 480 (567)
++++.|+.|++||+++++++..+.. ....|.+++|+|++++|++++ .+ .|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998888763 245789999999999999998 66 99999
Q ss_pred eC--CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-------CCeEEEEECC
Q 008393 481 TV--GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMS 528 (567)
Q Consensus 481 d~--~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-------dg~I~iwd~~ 528 (567)
++ ..+.....+..+..+ ..+.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 99 554444667777777 889999999954 4444433 3457777654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=254.39 Aligned_cols=254 Identities=11% Similarity=0.151 Sum_probs=216.3
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeC-CCCeeeeeecc--cCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT-DTLKSKTNLEE--HSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~-~~~~~~~~l~~--h~~~V~~i~f 337 (567)
.|+.+++|+...+........+.+|...|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 345678899887764455667779999999999999999 9999999999999999 77755 77788 9999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCC--------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-Ceee
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCT 408 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~ 408 (567)
+| +.+|++++.|+.|++||+.+. ...+..+. |...|.+++|++++ +++++.|+.|++||+++ +...
T Consensus 110 ~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~ 184 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCC
T ss_pred CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCcccccc
Confidence 99 999999999999999998741 22334444 88999999999875 66899999999999998 5432
Q ss_pred --EE---EeCCeeEEEEec-CCCEEEEEECCCeEEEEECCCC------eEEEEecCCCC---------CeeEEEEcCCCC
Q 008393 409 --RV---FKGGTAQMRFQP-HLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTK---------PIDSVCWDPSGE 467 (567)
Q Consensus 409 --~~---~~~~~~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~---------~V~~l~~sp~g~ 467 (567)
.. ....+.+++|+| ++..+++++.++.|++||++.. +....+..|.. .|.+++|+|+++
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence 12 234678999999 9999999999999999999887 77778888765 999999999999
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcCCe-EEEEE
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQS-LELWN 526 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~-I~iwd 526 (567)
+|++++.| .|++||+.++ +.+..+..| ...|.+++ |++.+|++++.||. .+.|.
T Consensus 265 ~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99999999 9999999876 678888888 89999999 99999999999998 44444
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=249.93 Aligned_cols=252 Identities=18% Similarity=0.264 Sum_probs=185.6
Q ss_pred eeeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC---------eeeeeecccCccEEEEEECCC--CCeE
Q 008393 278 KEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPS--MPRL 344 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~---------~~~~~l~~h~~~V~~i~fsp~--~~~l 344 (567)
+....+.+|...|++++|+| |+++|++|+.||.|++||+.++ +.+..+..|...|.+++|+|+ +.+|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 45677889999999999999 6999999999999999999877 667888899999999999999 9999
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEe-------------ccCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCee--
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTF-------------MGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC-- 407 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~-------------~~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~-- 407 (567)
++++.||.|++||+.+.. .+..+ ..|...+.+++|+|+ ...++++++.|+.+.+|+...++.
T Consensus 128 ~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEEETTCEEEEEECSSTT-CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EEecCCCcEEEecCCChH-HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 999999999999998733 22221 268889999999997 344666899999998888888765
Q ss_pred eEEEe---CCeeEEEEecCC----CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----
Q 008393 408 TRVFK---GGTAQMRFQPHL----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----- 475 (567)
Q Consensus 408 ~~~~~---~~~~~~~~~~~~----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----- 475 (567)
+..+. ..+.+++|+|++ ..+++++.|+.|++||++.+........+...+....+.+....++.+..+
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 44443 457899999998 689999999999999999876655555444445555555555555554433
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.+.+|+. .....+..+..|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 287 ~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 287 KAELQSN---LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ----CCS---EEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred eeeeccc---ccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 3444443 334778888999999999999999999999999999999999987544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=249.81 Aligned_cols=244 Identities=15% Similarity=0.265 Sum_probs=203.5
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE--CCCCCeEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f--sp~~~~l~s~s~dg~I~iwd~ 358 (567)
..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 5678899999999999999999999999999999999988776 5679999999999 899999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCE----EEE
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGR----YLA 429 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~----l~~ 429 (567)
.+ +..+..+..+. .+.++.+.++ .+++++.++.+++|+++......... .....+.+.+.... +++
T Consensus 159 ~~-~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 159 RS-SNPMMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SC-SSCSEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CC-CcEEEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 97 56667777554 6777777744 45578889999999998865443322 34556666655544 999
Q ss_pred EECCCeEEEEECCCC---eEEEEecCCCC------------CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 430 AAAENVVSILDAETQ---ACRLSLQGHTK------------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~---~~~~~~~~h~~------------~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
++.++.|++||++.. ..+..+.+|.. .|.+++|+|++++|++++.| .|++||+.++ .++..
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~ 310 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKT 310 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEE
T ss_pred ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEE
Confidence 999999999999987 56677777765 79999999999999999999 9999999876 78888
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeE---EEEECCCCcEE
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSL---ELWNMSENKTM 533 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I---~iwd~~~~~~~ 533 (567)
+..|...|.+++|+|++.+|++++.|+.. .+|+.+....+
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred ecCCCCCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 89999999999999999999999998744 44444444443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=239.70 Aligned_cols=259 Identities=10% Similarity=0.008 Sum_probs=187.9
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-- 340 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~-- 340 (567)
+..+++|+..+++.++.+.++++|..+|..+.|.||-.-|++..-. + -+...|+.|+|+|+
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~--------~~~~~v~sla~spd~~ 124 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG---------N--------LEIREIRALFCSSDDE 124 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC---------S--------SSEEEEEEECC-----
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec---------c--------ccccceEEEEECCCcc
Confidence 3468999999999999999999999999999999987544433211 1 14456899999999
Q ss_pred --CCeEEEEeCCCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---EeCC
Q 008393 341 --MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGG 414 (567)
Q Consensus 341 --~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~---~~~~ 414 (567)
+.++++++.+ +++|++.+ ++.+.. ..+|...|..++|+|+| +.+.. +...
T Consensus 125 ~~~~~l~s~g~~--~~v~~l~~-g~lv~ss~~g~d~~V~~~~~s~dG---------------------~~~~s~~~~~~~ 180 (356)
T 2w18_A 125 SEKQVLLKSGNI--KAVLGLTK-RRLVSSSGTLSDQQVEVMTFAEDG---------------------GGKENQFLMPPE 180 (356)
T ss_dssp -CCEEEEEEEEE--EEEEEETT-TEEEEEESSSTTCEEEEEEECTTS---------------------CEEEEEEECCCS
T ss_pred ccccEEEeCCCe--EEEEecCC-CcEEEecccCCCCcEEEEEECCCC---------------------ceeeeeccCCCc
Confidence 8888888854 77887644 333333 23444444444444443 33322 2345
Q ss_pred eeEEEEec---CCCEEEEEECCCeEEEEECCCCeEEEEecCCC---CCeeEEEEcCCCCEE------------EEEeCC-
Q 008393 415 TAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSLQGHT---KPIDSVCWDPSGELL------------ASVSED- 475 (567)
Q Consensus 415 ~~~~~~~~---~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---~~V~~l~~sp~g~~l------------~s~s~d- 475 (567)
+..++|++ ++..+++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+.|
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 66778888 66888889999999999999999999998754 357778999999986 567788
Q ss_pred eEEEEeCCCCCCCceEEEe-----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCee-EEEEe
Q 008393 476 SVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA-ALAVS 548 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~-----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~~s 548 (567)
+|++||..++ +++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++.+ ++.+|...+. +++|+
T Consensus 261 tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 261 QLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp EEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred EEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 9999999876 444443 2444444444443 778999999999999999999987 6778887655 68999
Q ss_pred cCCCEEEEEECCCcEEEcC
Q 008393 549 TETGYVASASHDKFVKLWK 567 (567)
Q Consensus 549 pdg~~l~s~s~Dg~I~iWd 567 (567)
|||++|++|+.|++|||||
T Consensus 336 PDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SSSSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEec
Confidence 9999999999999999996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=249.94 Aligned_cols=217 Identities=22% Similarity=0.331 Sum_probs=179.6
Q ss_pred eeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCC--CCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg 351 (567)
+.+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 456778899999999999987 9999999999999999999987 77888899999999999999 99999999999
Q ss_pred cEEEEEcCCCC-ceeEEeccCCCcEEEEEEcCC------------CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEE
Q 008393 352 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 418 (567)
Q Consensus 352 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~------------~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~ 418 (567)
.|++||+.... .....+.+|...|.+++|+|. ...++++++.|+.|++||++++...
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------- 195 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT---------- 195 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE----------
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc----------
Confidence 99999998742 344567789999999999995 1334556777777777776543211
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC---CCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---GELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
......+.+|...|.+++|+|+ +.+|++++.| .|++||++++........+
T Consensus 196 -------------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 250 (379)
T 3jrp_A 196 -------------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 250 (379)
T ss_dssp -------------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred -------------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee
Confidence 1233467789999999999999 8999999999 9999999876433333333
Q ss_pred --ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 495 --SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 495 --~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..+...+.+++|+|++.+|++++.||.|++|++..
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 33778899999999999999999999999999874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=246.57 Aligned_cols=243 Identities=8% Similarity=0.032 Sum_probs=182.1
Q ss_pred EEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe
Q 008393 313 LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 313 vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~ 392 (567)
||++.+.+.+..+..|...|++++|+|++++|++|+.++ ++|||+++ ........ ...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQE--MRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEEE--CSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeeee--cCCeEEEEEcCCCCEEEEEEC
Confidence 566777777778889999999999999999999998876 78999986 33333322 234778888888888877888
Q ss_pred CCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEE
Q 008393 393 GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 393 ~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l 469 (567)
.|+.|++||+.+++++..+.. .+..+.++++ .+++ +.++.|++||+.++ +.+..+.. +...+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999998887764 4566677654 3433 45889999999987 65555543 444566777 566
Q ss_pred EEE--eCC-eEEEEeCCCCCCC------------c-eEEEeecCCCceEEEEEeCCCCeEEEEEcCCe-EEEEECCCCcE
Q 008393 470 ASV--SED-SVRVWTVGSGSEG------------E-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMSENKT 532 (567)
Q Consensus 470 ~s~--s~d-~I~iwd~~~~~~~------------~-~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-I~iwd~~~~~~ 532 (567)
+++ +.+ .|++||+.++... . ++..+.+|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 566 9999999875310 1 26778899999999999999999999999998 99999999987
Q ss_pred E-Eec-c-ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M-TLT-A-HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~-~~~-~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+ .+. + |...|.+++|+|++++|++++.|+.|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 555 4 999999999999999999999999999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-27 Score=249.95 Aligned_cols=298 Identities=12% Similarity=0.095 Sum_probs=240.5
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC--CCCeeeeeecccCccEEEEEECC-
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSP- 339 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~--~~~~~~~~l~~h~~~V~~i~fsp- 339 (567)
+..+.+||..++ +.+..+..+.. +.+++|+|||++|++++.|+.|.+||+ .+++.+.++.. ...+..++|+|
T Consensus 158 d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~ 232 (543)
T 1nir_A 158 AGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKF 232 (543)
T ss_dssp GTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCS
T ss_pred CCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCC
Confidence 445778887766 45566663333 889999999999999999999999999 88999888884 45689999999
Q ss_pred ---CCCeEEEEeC-CCcEEEEEcCCCCceeEEecc----------C-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 340 ---SMPRLATSSF-DKTVRVWDADNPGYSLRTFMG----------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 340 ---~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
++++|++++. +++|.|||..+ .+++..+.. | ...+..+.+++++..++++...++.|.+||+.+
T Consensus 233 ~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 233 KGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp TTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred cCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999885 89999999987 666666653 2 237899999999999999999999999999998
Q ss_pred CeeeE--EEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC----CCCCeeEEEEcCC-CCEEEEEe-
Q 008393 405 GSCTR--VFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG----HTKPIDSVCWDPS-GELLASVS- 473 (567)
Q Consensus 405 ~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~----h~~~V~~l~~sp~-g~~l~s~s- 473 (567)
.+.+. .+. .....+.|+|++.++++++. ++.|.+||..+++++..+.. |.+....+ ++|+ +.+++++.
T Consensus 312 ~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 312 IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 76544 333 24567899999998887765 78999999999999888874 55444443 4676 66677765
Q ss_pred CC-eEEEEeCCCCCC----CceEEEeecCCCceEEEEEeCCCCeEEEEE-------cCCeEEEEECCCCcEE-Ee-----
Q 008393 474 ED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVIG-------CYQSLELWNMSENKTM-TL----- 535 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-------~dg~I~iwd~~~~~~~-~~----- 535 (567)
.+ +|.+||+.+... .+++.++..+...+..+.|+|++++|+++. .+++|.+||+.+++.. ..
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~ 470 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 470 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence 45 999999987322 588999999988888899999999999987 2679999999988765 32
Q ss_pred ----ccccCCeeEEEEecCCCEEEEEE-----CCCcEEEcC
Q 008393 536 ----TAHEGLIAALAVSTETGYVASAS-----HDKFVKLWK 567 (567)
Q Consensus 536 ----~~h~~~V~~l~~spdg~~l~s~s-----~Dg~I~iWd 567 (567)
..+...+..++|+|+|++|+++. .|+.|.|||
T Consensus 471 ~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 471 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred hcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 35677899999999999988763 379999997
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=240.97 Aligned_cols=261 Identities=12% Similarity=0.153 Sum_probs=218.2
Q ss_pred CCCCccceeccCCccceeee--eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 262 RDAGGRGMDVSQGFSFKEAN--SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~--~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
.+..+++|+..++....... .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP 221 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET
T ss_pred CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC
Confidence 45678999988774332221 5678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe-------CCCcEEEEECCCCeeeEEE
Q 008393 340 SMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-------GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 340 ~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-------~dg~I~iwd~~~~~~~~~~ 411 (567)
++++|++++ .|+.|++||+.+ +..+..+.. ...+.+++|+|+++.+++++. .|+.|++||+.+++.+..+
T Consensus 222 ~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 222 IRDLVYCSNWISEDISVIDRKT-KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp TTTEEEEEETTTTEEEEEETTT-TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCcEEEEECCC-CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 999886554 799999999987 666666654 456999999999887764443 5889999999999887766
Q ss_pred --eCCeeEEEEecCCCEEEEE-ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--------------
Q 008393 412 --KGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-------------- 474 (567)
Q Consensus 412 --~~~~~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-------------- 474 (567)
......++|+|++..++++ +.++.|.+||+.+++.+..+. +...+.+++|+|+|++|++++.
T Consensus 300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 4567789999999877655 669999999999998888776 6778999999999998888876
Q ss_pred -C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCC
Q 008393 475 -D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSE 529 (567)
Q Consensus 475 -d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~ 529 (567)
| .|++||+.++ +.+..+.. ...+..++|+|++++|++++. ++.|++|++..
T Consensus 379 ~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 3 8999999876 55666655 557899999999999998885 99999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=246.69 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=179.9
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC---------CCee
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---------NGSC 407 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~---------~~~~ 407 (567)
+.+++.+|++|+.||.|++||+.+ +..+..+. ...|.++.|+|. +++++.|+.|++|+.. +++.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 445778999999999999999997 55555554 466778888887 6699999999999665 5565
Q ss_pred eEEEe----CCeeEEEEec--CCCEEEEEECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 008393 408 TRVFK----GGTAQMRFQP--HLGRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRV 479 (567)
Q Consensus 408 ~~~~~----~~~~~~~~~~--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~i 479 (567)
+..+. ..+.+++|+| ++..+++++.|+.|++||+++++.+..+.. |...|.+++|+|+|.+|++|+.| .|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 66666 6689999999 999999999999999999999988776644 55689999999999999999999 9999
Q ss_pred EeCCCCCCCceE-EEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec---cccCCee--EEEEecCC
Q 008393 480 WTVGSGSEGECV-HELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIA--ALAVSTET 551 (567)
Q Consensus 480 wd~~~~~~~~~i-~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~---~h~~~V~--~l~~spdg 551 (567)
||++++. .+ ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++.. .+. .|...+. +++|+|++
T Consensus 197 wd~~~~~---~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 197 YNLSSPD---QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp EESSCTT---SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred EECCCCC---CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence 9998873 33 55666 899999999999999999999 559999999988654 222 2444454 69999999
Q ss_pred CEEEEEEC-CCcEEEcC
Q 008393 552 GYVASASH-DKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~-Dg~I~iWd 567 (567)
++|++++. |+.|+||+
T Consensus 273 ~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYK 289 (343)
T ss_dssp SEEEEEETTTTEEEEEE
T ss_pred CEEEEecCCCCcEEEEE
Confidence 99999998 99999994
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=241.99 Aligned_cols=232 Identities=20% Similarity=0.352 Sum_probs=195.8
Q ss_pred CCCCCccceeccCC-------ccceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCee-------eeee
Q 008393 261 PRDAGGRGMDVSQG-------FSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKS-------KTNL 325 (567)
Q Consensus 261 ~~d~~~~~~~~~~~-------~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~-------~~~l 325 (567)
..++.+++|++.+. .....+..+.+|...|++++|+|++. +|++|+.||.|++|++.++.. ...+
T Consensus 148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE
T ss_pred CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee
Confidence 34567888888762 22567788899999999999999998 999999999999999987322 4567
Q ss_pred cccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 326 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 326 ~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
..|...|.+++|+| ++.+|++++.||.|++||+++.. ..+..+..|...|.+++|+|++..++++|+.||.|++||+
T Consensus 228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 78999999999999 67799999999999999999742 5667788999999999999999888889999999999999
Q ss_pred CCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC-EEEEEeCC-eEEEE
Q 008393 403 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVW 480 (567)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~d-~I~iw 480 (567)
++... .+..+..|...|.+++|+|++. +|++++.| .|+||
T Consensus 308 ~~~~~--------------------------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 308 RNLKL--------------------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp TCTTS--------------------------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred CCCCC--------------------------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 86321 1225556889999999999985 78899988 99999
Q ss_pred eCCCCCC-----------CceEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCC
Q 008393 481 TVGSGSE-----------GECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 481 d~~~~~~-----------~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~ 530 (567)
|+..... ...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9986322 367778888999999999999999 8899999999999998754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=239.04 Aligned_cols=280 Identities=13% Similarity=0.115 Sum_probs=224.9
Q ss_pred CCCccceec--cCCccceeeeeeccCCCCeEEEEEcC--------------CCCeEEEEeCC------CcEEEEeCCCCe
Q 008393 263 DAGGRGMDV--SQGFSFKEANSVRASTSKVICCHFSS--------------DGKLLATGGHD------KKAVLWHTDTLK 320 (567)
Q Consensus 263 d~~~~~~~~--~~~~~~~~~~~l~~h~~~V~~l~~s~--------------dg~~lasg~~d------g~I~vwd~~~~~ 320 (567)
+..+++||+ .++... ....+.+|...+.++++++ .+..++.++.+ +.|++||++ +.
T Consensus 92 ~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~ 169 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGTVL-AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GY 169 (415)
T ss_dssp EEEEEEEECSSSTTCEE-EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SC
T ss_pred EEEEEEEeCCCCCCCEE-eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CC
Confidence 346899999 777421 2256889998888888775 25566666554 799999997 45
Q ss_pred eeeeecccCccEEEEEECCCCCeEEEEeCCC---cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc-
Q 008393 321 SKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE- 396 (567)
Q Consensus 321 ~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~- 396 (567)
....+..|...|.+++|+|+|++|++++.++ .|++||+.+ +.. ..+..|...+.+++|+|+|+.++++++.|+.
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 5677888999999999999999999999885 999999997 443 4566788899999999999988878877665
Q ss_pred -EEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEE
Q 008393 397 -IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 397 -I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 470 (567)
|++||+.+++...... .....+.|+|++..+++++.+ + .|++||+.+++.. .+..+...+.+++|+|+|++|+
T Consensus 248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEE
T ss_pred eEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEE
Confidence 9999999887643322 346789999999999988864 4 7888899988643 4555777899999999999998
Q ss_pred EEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCcEEEeccccCCee
Q 008393 471 SVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIA 543 (567)
Q Consensus 471 s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~ 543 (567)
+++. + .|++||+.++. . ..+..+. .+.+++|+|+|++|++++.++ .|++||+.++....+..|.+.|.
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 401 (415)
T ss_dssp EEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred EEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence 8875 3 79999998763 2 3344443 789999999999999998877 89999999888889999999999
Q ss_pred EEEEecCCC
Q 008393 544 ALAVSTETG 552 (567)
Q Consensus 544 ~l~~spdg~ 552 (567)
+++|+|...
T Consensus 402 ~~~~~~~~~ 410 (415)
T 2hqs_A 402 FPAWSPYLH 410 (415)
T ss_dssp EEEECCCCC
T ss_pred CCccccccc
Confidence 999999754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=266.35 Aligned_cols=210 Identities=18% Similarity=0.302 Sum_probs=180.6
Q ss_pred eeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCC--CCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg 351 (567)
..+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.+++ .+..+.+|...|++++|+|+ +.+|++|+.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 466788899999999999998 9999999999999999999887 77888899999999999999 99999999999
Q ss_pred cEEEEEcCCCC-ceeEEeccCCCcEEEEEEcCC------------CCeEEEEEeCCCcEEEEECCCC----eeeEEEe--
Q 008393 352 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNG----SCTRVFK-- 412 (567)
Q Consensus 352 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~------------~~~li~s~~~dg~I~iwd~~~~----~~~~~~~-- 412 (567)
.|++||+.+.. .....+.+|...|.+++|+|. +..++++|+.||.|++||++++ .....+.
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 99999998742 344567789999999999994 2345669999999999999887 3444444
Q ss_pred -CCeeEEEEecC---CCEEEEEECCCeEEEEECCCCe-----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 413 -GGTAQMRFQPH---LGRYLAAAAENVVSILDAETQA-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 413 -~~~~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~-----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..+.+++|+|+ +..+++++.|+.|++||++++. .......|...|++++|+|+|.+|++++.| .|++|++
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 45789999999 8889999999999999998864 333345588899999999999999999999 9999999
Q ss_pred CCCCC
Q 008393 483 GSGSE 487 (567)
Q Consensus 483 ~~~~~ 487 (567)
..+..
T Consensus 284 ~~~~~ 288 (753)
T 3jro_A 284 NLEGK 288 (753)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 86543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-26 Score=222.59 Aligned_cols=219 Identities=11% Similarity=0.107 Sum_probs=168.6
Q ss_pred eeeeeccCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe--CCCc
Q 008393 279 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~d----g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s--~dg~ 352 (567)
++.--.-|...|.+++|+|| +.++++++.+ +.+|++. +++++.+++ .|+.
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~ 158 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQ 158 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCE
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCc
Confidence 44444556789999999999 9999998844 7778653 333444433 4778
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcC---CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC------eeEEEEecC
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------TAQMRFQPH 423 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~------~~~~~~~~~ 423 (567)
|++|++...+..+..+.+|...+..++|++ ++ .+|++++.|++|+|||++++++++.+.++ +..++|+|+
T Consensus 159 V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 159 VEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred EEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 888888655667777788999999999988 44 46779999999999999999999999753 346689998
Q ss_pred CCEEE------------EEECCCeEEEEECCCCeEEEEe-----cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 424 LGRYL------------AAAAENVVSILDAETQACRLSL-----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 424 ~~~l~------------~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
+..++ +++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.| +|+|||+.++
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC
Confidence 87663 4566899999999999887765 3676666555554 8899999999 9999999887
Q ss_pred CCCceEEEeecCCCceE-EEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 486 SEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
+++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 316 ---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 ---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 78889988877655 5899999999999999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=236.30 Aligned_cols=272 Identities=14% Similarity=0.155 Sum_probs=216.0
Q ss_pred CCCeEEEEEcCCCC-eEEEEe----CCC----cEEEEeC--CCCeee--eeecccCccEEEEEECC--------------
Q 008393 287 TSKVICCHFSSDGK-LLATGG----HDK----KAVLWHT--DTLKSK--TNLEEHSSLITDVRFSP-------------- 339 (567)
Q Consensus 287 ~~~V~~l~~s~dg~-~lasg~----~dg----~I~vwd~--~~~~~~--~~l~~h~~~V~~i~fsp-------------- 339 (567)
...|...+|.+.|. ++++|+ .+| .|+|||+ .+++.+ ..+.+|...+..+++.+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677788888775 565776 467 8999999 898877 45888888888777764
Q ss_pred CCCeEEEEeCC------CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC---cEEEEECCCCeeeEE
Q 008393 340 SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRV 410 (567)
Q Consensus 340 ~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg---~I~iwd~~~~~~~~~ 410 (567)
.+..|+.++.+ +.|++||++. .....+.+|...|.+++|+|+|+.++ +++.++ .|++||+.++++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEe
Confidence 25566666554 7999999974 34577778999999999999998666 555554 999999999887654
Q ss_pred E--eCCeeEEEEecCCCEEEEEE-CCC--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEe
Q 008393 411 F--KGGTAQMRFQPHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWT 481 (567)
Q Consensus 411 ~--~~~~~~~~~~~~~~~l~~~~-~dg--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd 481 (567)
. ...+..++|+|++..+++.+ .++ .|++||+.+++. ..+..|...+.+++|+|||++|++++.+ .|++||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 3 34568899999999888544 444 599999999876 4677788899999999999999888753 588889
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
+.++. ...+..+...+..++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++
T Consensus 298 ~~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 298 INGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp TTSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEE
T ss_pred CCCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEE
Confidence 87653 23444566788899999999999988875 58999999999887777665 899999999999999988
Q ss_pred CCC---cEEEcC
Q 008393 559 HDK---FVKLWK 567 (567)
Q Consensus 559 ~Dg---~I~iWd 567 (567)
.|+ .|++||
T Consensus 373 ~~~~~~~l~~~d 384 (415)
T 2hqs_A 373 SQGMGSVLNLVS 384 (415)
T ss_dssp EETTEEEEEEEE
T ss_pred cCCCccEEEEEE
Confidence 876 688875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=237.72 Aligned_cols=223 Identities=15% Similarity=0.146 Sum_probs=171.9
Q ss_pred CCCCCCccceeccCCcc--ceeeeeeccCCCCeEEEEEcC--------CCCeEEEEeCCCcEEEEeCCCCeeeeeecccC
Q 008393 260 DPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSS--------DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~--------dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~ 329 (567)
...|..+|+|+...+.. ...+..+.+|++.|.+++|+| |+++||+|+.|++|+|||+.++..+..+..|.
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~ 186 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS 186 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC
Confidence 45678899999987743 234567899999999999998 89999999999999999999998888888999
Q ss_pred ccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCcee------------------------EEeccCCCcEEEEEEc-CC
Q 008393 330 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL------------------------RTFMGHSASVMSLDFH-PN 383 (567)
Q Consensus 330 ~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~------------------------~~~~~h~~~V~~l~~~-p~ 383 (567)
..|.+++|+|++. +|++++.|++|++||+.+..... ....+|...|.++.|. ++
T Consensus 187 ~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 187 SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 9999999999875 89999999999999998643211 1124678889999997 56
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---------------------eeEEEEec-CCCEEEE-EECCCeEEEEE
Q 008393 384 KDDLICSCDGDGEIRYWSINNGSCTRVFKGG---------------------TAQMRFQP-HLGRYLA-AAAENVVSILD 440 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---------------------~~~~~~~~-~~~~l~~-~~~dg~I~i~d 440 (567)
+. .+++++.|+.+++||+..+.....+..+ .....+.+ .++.+++ ++.|+.|++||
T Consensus 267 g~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 267 GS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp TC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred CC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence 55 5569999999999999887655443221 11123333 3444444 55699999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
+.+++....+..|..+|.+++|+|||++||+++++.+.+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 9999888888889999999999999999999999988888764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=232.55 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=213.5
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc--CCCCceeEEeccC
Q 008393 294 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA--DNPGYSLRTFMGH 371 (567)
Q Consensus 294 ~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~~~h 371 (567)
+|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|++||+ .+ ...+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-c
Confidence 4889999999999999999999999999999984433 899999999999999999999999999 65 66667766 4
Q ss_pred CCcEEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------------CeeEEEEecCCCEEEEEEC-
Q 008393 372 SASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA- 432 (567)
Q Consensus 372 ~~~V~~l~~~p----~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~- 432 (567)
...+..++|+| +|+.+++++..++.|.+||..+++++..+.. .+..+.+++++..+++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56789999999 9988776666799999999999999888754 3457889998887766654
Q ss_pred CCeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEEeec----CCCceEEE
Q 008393 433 ENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC----NGNKFHSC 504 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~~~~----~~~~i~~~ 504 (567)
++.|.+||..+.+.+. .+. +...+..++|+|+|++|++++. + +|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7899999998764332 333 5667889999999998776664 4 9999999877 56666654 33333332
Q ss_pred EEeCCCCeEEEEE--cCCeEEEEECCC-------CcEE-EeccccCCeeEEEEecCCCEEEEEE-------CCCcEEEcC
Q 008393 505 VFHPTYPSLLVIG--CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASAS-------HDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spdg~~l~s~s-------~Dg~I~iWd 567 (567)
++|++..+++.+ .+++|.+||+.+ .+.+ ++..|.+.+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578754455444 578999999988 6666 7778888899999999999999987 277999996
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=212.77 Aligned_cols=267 Identities=10% Similarity=0.035 Sum_probs=214.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeC-------CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEc
Q 008393 287 TSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDA 358 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~-------dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~ 358 (567)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++|++++++++++ ..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456789999999999888774 568999999999988888753 347889999999966555 55799999999
Q ss_pred CCCCceeEEeccCCC---------cEEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEe-C--CeeEEEEecCCC
Q 008393 359 DNPGYSLRTFMGHSA---------SVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFK-G--GTAQMRFQPHLG 425 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~---------~V~~l~~~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~-~--~~~~~~~~~~~~ 425 (567)
.+ +..+..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. . ....+.|+|++.
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 KT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 87 555565554432 278999999998877666 458899999999999988876 2 367889999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecC----CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCC
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
.++++..++.|.+||..+++.+..+.. +...+..++|+|+|++|++++.+ .|.+||+.++ +.+..+....
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC-
Confidence 999999999999999999998877764 45568889999999987777654 8999999876 4455554433
Q ss_pred ceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 500 KFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
...++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|+|++|+++..+
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999887777 5789999999999887554455678999999999977766654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=243.17 Aligned_cols=273 Identities=12% Similarity=0.103 Sum_probs=212.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeC-CC-----cEEEEeCCCCeeeeeecccCc------------------------cEEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLEEHSS------------------------LITDVR 336 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~-dg-----~I~vwd~~~~~~~~~l~~h~~------------------------~V~~i~ 336 (567)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557899999999999999998 88 899999999988777765543 388999
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCC-ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG- 414 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~- 414 (567)
|+|||++|++++. +.|++||+.+.. ..+..+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999987 899999998731 034556778889999999999987664 44 569999999998876554332
Q ss_pred ------------------eeEEEEecCCCEEEEEECCC---------------------------------eEEEEECCC
Q 008393 415 ------------------TAQMRFQPHLGRYLAAAAEN---------------------------------VVSILDAET 443 (567)
Q Consensus 415 ------------------~~~~~~~~~~~~l~~~~~dg---------------------------------~I~i~d~~~ 443 (567)
...+.|+|++..|++++.++ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 36689999999999987765 889999998
Q ss_pred -CeEEEEec--CCCCCeeEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCCCCceEEEeecCCC----ceEEEEEeCCC
Q 008393 444 -QACRLSLQ--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVHELSCNGN----KFHSCVFHPTY 510 (567)
Q Consensus 444 -~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~-----d-~I~iwd~~~~~~~~~i~~~~~~~~----~i~~~~~sp~~ 510 (567)
++...... .|...+..++| |||++|++++. + .|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 87655443 36778999999 99999987763 4 79999998773 3333333332 34578999999
Q ss_pred CeEEEEEcCCeEEEEEC--CCCcEEEeccccCCeeEE-EEecCCCEEEEE-ECCC--cEEEcC
Q 008393 511 PSLLVIGCYQSLELWNM--SENKTMTLTAHEGLIAAL-AVSTETGYVASA-SHDK--FVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~--~~~~~~~~~~h~~~V~~l-~~spdg~~l~s~-s~Dg--~I~iWd 567 (567)
+++++++.++.+.||.+ ..+ ...+..|...|..+ .|+|+++.|+.. +.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 98888888886666654 444 55777888888887 599999977654 4455 888884
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=210.03 Aligned_cols=272 Identities=9% Similarity=0.114 Sum_probs=201.4
Q ss_pred EEEcCCCCe-EEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEecc
Q 008393 293 CHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 293 l~~s~dg~~-lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~ 370 (567)
..|..++++ +++++.++.|.+||..+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.+.......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6777889999999999999988888777777 9999999997777665 889999999884332666666
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CCe-EEEEECCC
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENV-VSILDAET 443 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~d-g--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~-I~i~d~~~ 443 (567)
+...+.+++|+|+++.++ ++..+ + .|.+||+.+++.+..+.. ....++|+|++..++++.. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999998777 54444 3 899999999998887764 4578999999987766654 577 99999875
Q ss_pred CeEE----EEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 444 QACR----LSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 444 ~~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
...+ .........+..++|+|+|++|+.++ .+ .|++||+.++.....+..+.. ...+..++|+|++++|+++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 4222 12223445688999999999776665 45 899999987754233555554 45677899999999887776
Q ss_pred c-CCeEEEEECCCCcEE---Eecc----ccC---CeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 518 C-YQSLELWNMSENKTM---TLTA----HEG---LIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 518 ~-dg~I~iwd~~~~~~~---~~~~----h~~---~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
. ++.|.+||+.+++.. .+.. +.. .+..++|+|++++|++++. ++.|++||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 678999999998772 1111 122 2356899999998876665 56999996
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=239.46 Aligned_cols=264 Identities=9% Similarity=0.058 Sum_probs=200.7
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+ +...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~-g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS-GRQM 185 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT-TEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC-CCEE
Confidence 45778999999999999986 999999999873 45567778889999999999999999885 5899999987 4444
Q ss_pred EEeccCCCc----------------EEEEEEcCCCCeEEEEEeCCC---------------------------------c
Q 008393 366 RTFMGHSAS----------------VMSLDFHPNKDDLICSCDGDG---------------------------------E 396 (567)
Q Consensus 366 ~~~~~h~~~----------------V~~l~~~p~~~~li~s~~~dg---------------------------------~ 396 (567)
.....+... +.+++|+|||+.++++. .|+ .
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 433333332 47799999998777544 343 7
Q ss_pred EEEEECCC-CeeeEEEe-----CCeeEEEEecCCCEEEEEEC-----CCeEEEEECCCCeEEEEecCCCC----CeeEEE
Q 008393 397 IRYWSINN-GSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRLSLQGHTK----PIDSVC 461 (567)
Q Consensus 397 I~iwd~~~-~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~----~V~~l~ 461 (567)
|++||+.+ ++...... ..+..++| |++..+++++. +..|++||+.+++....+..+.. .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999998 87655432 23567899 99999988765 46899999999988777665543 456899
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE-EEeCCCCeEEEEEcCC---eEEEEECCC-Cc-EEE
Q 008393 462 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQ---SLELWNMSE-NK-TMT 534 (567)
Q Consensus 462 ~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~-~~sp~~~~l~~~~~dg---~I~iwd~~~-~~-~~~ 534 (567)
|+|||+++++++.+ .++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 99999988888887 77777765321 3 56666777778777 5999999887666543 788998753 33 334
Q ss_pred eccccCCeeEEEEecCCCEEEEEECC
Q 008393 535 LTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 535 ~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+.. ...+.+++|+|||++|+....+
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred ccc-CCCceEEEECCCCCEEEEEecC
Confidence 444 6678899999999988766543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=209.51 Aligned_cols=256 Identities=12% Similarity=0.077 Sum_probs=196.1
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-Ceeeeeeccc-CccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h-~~~V~~i~f 337 (567)
...+..+++|+...+ ....+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..+ ...|.+++|
T Consensus 18 ~~~~~~i~~~d~~~~----~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTR----KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTT----EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCC----ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 445667888988776 3445667899999999999999999987 88999999999 8877777666 477899999
Q ss_pred CCCCCeEEEEe--CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe
Q 008393 338 SPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415 (567)
Q Consensus 338 sp~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~ 415 (567)
+|++++|++++ .++.+.||.++........+..+. .+..++|+|++..+++++..++.+++|++...
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~---------- 161 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID---------- 161 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETT----------
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECC----------
Confidence 99999999999 445566665543233345554443 48999999999988878888888888875321
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEE
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~ 493 (567)
+++ ...+..+...+.+++|+|+|++|++++. + .++||++.... ..+..
T Consensus 162 ---------------------------~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~ 211 (297)
T 2ojh_A 162 ---------------------------SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVER 211 (297)
T ss_dssp ---------------------------TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEE
T ss_pred ---------------------------CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEE
Confidence 111 1133446678899999999998887764 5 88888876221 34556
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcC-----------CeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEEC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+..+...+..++|+|++++|++++.+ +.|++||+.+++.. .+..|...+.+++|+|++++|++++.
T Consensus 212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 66677788999999999999988876 56999999988654 34478889999999999999988876
Q ss_pred CC
Q 008393 560 DK 561 (567)
Q Consensus 560 Dg 561 (567)
|.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-23 Score=207.80 Aligned_cols=264 Identities=11% Similarity=0.146 Sum_probs=192.1
Q ss_pred eEEEEeCCCcEEEEeCC-CC--eeeeeecccCccEEEEEECCCCCeEEEEeCC-CcEEEEEcC--CCCc-eeEEeccCCC
Q 008393 301 LLATGGHDKKAVLWHTD-TL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVWDAD--NPGY-SLRTFMGHSA 373 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~-~~--~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-g~I~iwd~~--~~~~-~~~~~~~h~~ 373 (567)
++++++.|+.|++|+++ ++ +.+.. ..+...+.+++|+|++++|++++.+ +.|++|+++ +... .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444789999999995 33 23333 3467789999999999999998886 999999998 3222 233444333
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCeeeEEEeC--CeeEEEEecCCCEEEEEE-CCCeEEEEECCC-CeE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFKG--GTAQMRFQPHLGRYLAAA-AENVVSILDAET-QAC 446 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~---~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~-~~~ 446 (567)
.+..++|+|+++.+++++..++.|.+||+. ..+.+..+.. ....++|+|++..+++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 788999999998888777779999999994 3344444433 467789999999888888 789999999987 654
Q ss_pred EE----EecC-CCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCC-CCCceEEEeec---C---CCceEEEEEeCCCCe
Q 008393 447 RL----SLQG-HTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSG-SEGECVHELSC---N---GNKFHSCVFHPTYPS 512 (567)
Q Consensus 447 ~~----~~~~-h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~-~~~~~i~~~~~---~---~~~i~~~~~sp~~~~ 512 (567)
.. .+.. ....+.+++|+|++++|++++ .+ .|.+|++... .....+..+.. . ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776665 55 8999999642 11222333221 1 235668999999998
Q ss_pred EEEEE-cCCeEEEEECC--CCc--EE-EeccccCCeeEEEEecCCCEEEEEE-CCCcEEEcC
Q 008393 513 LLVIG-CYQSLELWNMS--ENK--TM-TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 567 (567)
Q Consensus 513 l~~~~-~dg~I~iwd~~--~~~--~~-~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iWd 567 (567)
|+++. .++.|++||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.+|+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 68899999998 332 22 233333 489999999999888888 589999993
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-24 Score=245.31 Aligned_cols=289 Identities=10% Similarity=0.039 Sum_probs=229.3
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CeeeeeecccCccEEEEEECCCCC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
...++|....+ .....+.+|...+.++.|+++ .++++++.|+.+.||.++. +.....+..|. .+..++|+|+|+
T Consensus 183 ~~~~lw~~~~~---~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 183 TRGKIWIEVNS---GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TCCEEEEEEET---TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CcCCEEEECCC---CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 34566754443 244556899999999999998 6777888889999998653 44555666665 366779999999
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEecc-----------CCCcEEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~l~~~-p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
+|+++. ++.|++||+.. . .+..+.+ |...+.+++|+ |+|..+++.+ ++.|++|++..+.....
T Consensus 258 ~la~~~-~~~i~~~d~~~-~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 258 RILFSK-GGSIYIFNPDT-E-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp CEEEEE-TTEEEEECTTT-C-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred EEEEEe-CCEEEEecCCc-e-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence 998885 88999999943 3 3334444 34478999999 9988777444 88999999988775542
Q ss_pred Ee--C-CeeEEEEecCCCEEEEEECCCeEE-EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 411 FK--G-GTAQMRFQPHLGRYLAAAAENVVS-ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 411 ~~--~-~~~~~~~~~~~~~l~~~~~dg~I~-i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
.. . .+..+.|+ ++..+++++.++.+. +||+.+++... +.+|...+..++|+|||++|++++.+ .|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 21 2 35567899 888898888888899 99998887654 44788899999999999999999999 9999999876
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC----------eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
+....+..+...+..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|+
T Consensus 411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence 44555557788889999999999999887654 89999999998778888988999999999999999
Q ss_pred EEECCCcEEEcC
Q 008393 556 SASHDKFVKLWK 567 (567)
Q Consensus 556 s~s~Dg~I~iWd 567 (567)
+++.++..++|+
T Consensus 488 ~~s~~~~~~~~~ 499 (1045)
T 1k32_A 488 YLSYRSLDPSPD 499 (1045)
T ss_dssp EEESCCCCCEEC
T ss_pred EEecccCCcCcc
Confidence 999887777664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=241.66 Aligned_cols=288 Identities=11% Similarity=0.093 Sum_probs=227.6
Q ss_pred CCccceeccCCccceeeeeeccCCCCe-------EEEEEcCCCCeEEEEeCC------CcEEEEeCCCCeee--------
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKV-------ICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSK-------- 322 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V-------~~l~~s~dg~~lasg~~d------g~I~vwd~~~~~~~-------- 322 (567)
..+.+|+...+ +...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 80 ~~i~~~d~~~g----~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~ 155 (1045)
T 1k32_A 80 ADLYFYNGENG----EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT 155 (1045)
T ss_dssp EEEEEEETTTT----EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS
T ss_pred CeEEEEECCCC----CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc
Confidence 35678887765 467788899888 999999999977777644 35888887655432
Q ss_pred -----------------------------------------eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 323 -----------------------------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 323 -----------------------------------------~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..+.+|...+.++.|+++ .++++++.|+.+.||.++..
T Consensus 156 ~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 156 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 123456778888999988 66777888899999987654
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------------CeeEEEEe-cCCCE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQ-PHLGR 426 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~~~~~-~~~~~ 426 (567)
+.....+..|. .+..++|+|+|..+++. .++.|++||+...... .+.. .+..+.|+ |++..
T Consensus 235 g~~~~~l~~~~-~~~~~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~ 310 (1045)
T 1k32_A 235 GKDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL 310 (1045)
T ss_dssp SCSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC
T ss_pred CCcceEecCCC-CcceeeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCE
Confidence 44556666665 46677999999877644 4899999999544433 4443 47889999 99988
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC-eEE-EEeCCCCCCCceEEEeecCCCceEE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVR-VWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d-~I~-iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
+++++ ++.|.+|++.+++.. .+..|.. .+..++|+ ||+.|++++.+ .|. +||+.++. ...+..+...+..
T Consensus 311 la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----~~~l~~~~~~~~~ 383 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFA 383 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEE
T ss_pred EEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----ceEecCCccceee
Confidence 88877 889999999988755 4666777 89999999 99999999988 888 99987652 2334466788999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-cccCCeeEEEEecCCCEEEEEECCC----------cEEEcC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDK----------FVKLWK 567 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg----------~I~iWd 567 (567)
++|+|+|++|++++.++.|++||+.+++...+. .|.+.+.+++|+|||++|++++.++ .|++||
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 999999999999999999999999999887554 8999999999999999999887654 899996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=202.57 Aligned_cols=280 Identities=13% Similarity=0.100 Sum_probs=204.9
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCee-eeeecccCccEEEEEECCCC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~-~~~l~~h~~~V~~i~fsp~~ 341 (567)
..+++||..++ +....+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+...+.+++|+|++
T Consensus 20 ~~v~~~d~~~~---~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 20 RRISFFSTDTL---EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp TEEEEEETTTC---CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS
T ss_pred CeEEEEeCccc---ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC
Confidence 45677887766 3344455566667 9999999997776665 89999999999988 77777777766669999999
Q ss_pred CeEEEEeCCC---cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc-EEEEECCCCeeeE-----EEe
Q 008393 342 PRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTR-----VFK 412 (567)
Q Consensus 342 ~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~-I~iwd~~~~~~~~-----~~~ 412 (567)
++|+++..++ .|.+||+.+ +..+..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+. .+.
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred CEEEEecCCCCcccEEEEECCC-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 9999555553 899999987 566666553 4557999999999888878787788 9999998644331 122
Q ss_pred --CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeE---EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCC
Q 008393 413 --GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS 484 (567)
Q Consensus 413 --~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~ 484 (567)
.....++|+|++..++++.. ++.|.+||+.+++. +..+..+ ..+..++|+|+|++|+++..+ .|.+||+.+
T Consensus 174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 34678899999997777664 78999999998877 7677643 667889999999988777654 899999987
Q ss_pred CCCCceEEEeecC----CCc---eEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCC
Q 008393 485 GSEGECVHELSCN----GNK---FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTET 551 (567)
Q Consensus 485 ~~~~~~i~~~~~~----~~~---i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg 551 (567)
++. ..+..+... ... ...++|+|++++|++++.+ +.|.+||+.+.....+......-....++|++
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 253 GTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp TEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred Cce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 632 123333322 111 2457999999999877765 59999999887665555444333333444543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=203.82 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=201.7
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC-CcEEEEeCC--CCe--eeeeecccCccEEEEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTD--TLK--SKTNLEEHSSLITDVRF 337 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d-g~I~vwd~~--~~~--~~~~l~~h~~~V~~i~f 337 (567)
+..+++|+......++.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|+++ +++ .+..+..+. .+.+++|
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST 91 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE
T ss_pred CCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE
Confidence 456778887543333344333 477789999999999999988876 999999997 544 344555444 7899999
Q ss_pred CCCCCeEEEEeC-CCcEEEEEcCCC--CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeE----
Q 008393 338 SPSMPRLATSSF-DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR---- 409 (567)
Q Consensus 338 sp~~~~l~s~s~-dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~---- 409 (567)
+|++++|++++. ++.|.+||+... ...+..+. ....+.+++|+|+++.+++++..++.|++||+.+ ++...
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 999998877765 888999999521 23334444 3346889999999988876665899999999987 65432
Q ss_pred EEe----CCeeEEEEecCCCEEEEEE-CCCeEEEEECCC--CeE--EEEec---CC---CCCeeEEEEcCCCCEEEEEe-
Q 008393 410 VFK----GGTAQMRFQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQ---GH---TKPIDSVCWDPSGELLASVS- 473 (567)
Q Consensus 410 ~~~----~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~---~h---~~~V~~l~~sp~g~~l~s~s- 473 (567)
.+. .....++|+|++..+++++ .++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++.
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 222 1456789999999887776 689999999953 432 22222 11 23567899999999887555
Q ss_pred CC-eEEEEeCCCC-CCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEE--ECCCCcEEEe--ccccCCeeEEE
Q 008393 474 ED-SVRVWTVGSG-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSENKTMTL--TAHEGLIAALA 546 (567)
Q Consensus 474 ~d-~I~iwd~~~~-~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~~~~~~~--~~h~~~V~~l~ 546 (567)
.+ .|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+| |..+++...+ ........+++
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 55 9999999732 22345555555444 88899999999999888 57899999 5456644321 12235577888
Q ss_pred EecCCC
Q 008393 547 VSTETG 552 (567)
Q Consensus 547 ~spdg~ 552 (567)
|.++.+
T Consensus 330 ~~~~~~ 335 (343)
T 1ri6_A 330 VNAHEG 335 (343)
T ss_dssp EEEEC-
T ss_pred EEcccC
Confidence 887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-23 Score=204.44 Aligned_cols=260 Identities=11% Similarity=0.090 Sum_probs=202.6
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCc--cEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEec-cC----
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFM-GH---- 371 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~--~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~-~h---- 371 (567)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|++++++ ++..++.|.+||+.+ +..+..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccc
Confidence 4789999999999999999999888763332 488999999998765 455678999999987 45554444 22
Q ss_pred CCcEEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEE
Q 008393 372 SASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~-----------~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.. ....+.|+|++..++++ ++.|.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 125678999999887775431 479999999999988877654 45678899999988887 689999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-------------------------eEEEEeCCCCCCCceEEE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------------SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-------------------------~I~iwd~~~~~~~~~i~~ 493 (567)
||+.+++.+..+..+.. ...+.|+|+++.|+..+.+ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999998877765431 1133789999877655533 2689999876432 334
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+...+..++|+|++++|+++ ++.|++||+.+++..........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999999888 6899999999988775444456789999999999999999999999996
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=237.44 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=204.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc---cEEEEEECCCCCeEEEEeCC---------CcEEEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSFD---------KTVRVW 356 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~---~V~~i~fsp~~~~l~s~s~d---------g~I~iw 356 (567)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4668999999998876 6899999999999998888887765 49999999999999999874 778899
Q ss_pred EcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---e---------------
Q 008393 357 DADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---T--------------- 415 (567)
Q Consensus 357 d~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~--------------- 415 (567)
|+.+.. . ..+. +|...+..++|+|+|+.++++ + ++.|++||+.+++.......+ +
T Consensus 97 d~~~~~-~-~~l~~~~~~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGD-P-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCC-C-EECCCTTCCSCCCSBCCBCSSTTCEEEE-E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCc-e-EeccCCccccccccccEECCCCCEEEEE-E-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 998743 2 3333 444558899999999877744 4 479999999998877665432 1
Q ss_pred ---eEEEEecCCCEEEEEECCC----------------------------------eEEEEECCCCeEEEEecCC-----
Q 008393 416 ---AQMRFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACRLSLQGH----- 453 (567)
Q Consensus 416 ---~~~~~~~~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~~~~~~h----- 453 (567)
..+.|+|++..|++++.++ .|++||+.+++....+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 5799999999999887543 7999999998865566654
Q ss_pred -CCCeeEEEEcCCCCEEEEEeC----C-eEEEEeCCCCCCCceEEEeec-CCCce----EEEEEeCCCCeEEEE--EcCC
Q 008393 454 -TKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGSEGECVHELSC-NGNKF----HSCVFHPTYPSLLVI--GCYQ 520 (567)
Q Consensus 454 -~~~V~~l~~sp~g~~l~s~s~----d-~I~iwd~~~~~~~~~i~~~~~-~~~~i----~~~~~sp~~~~l~~~--~~dg 520 (567)
...+..++|+|||++|++... + .|++||+.++. +...+.. +...+ ..++|+|||+.|+.. ..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 567899999999998877642 3 69999998763 3333322 22222 367999999988764 3455
Q ss_pred ------eEEEEE-CCCCc---EEEeccccCCeeE-EEEecCCCEEEEEECC---CcEEEcC
Q 008393 521 ------SLELWN-MSENK---TMTLTAHEGLIAA-LAVSTETGYVASASHD---KFVKLWK 567 (567)
Q Consensus 521 ------~I~iwd-~~~~~---~~~~~~h~~~V~~-l~~spdg~~l~s~s~D---g~I~iWd 567 (567)
.|++|| ..++. ...+..+...+.. ++|+|||++|+..+.+ +.++||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 578888 45555 4455444444554 6999999999876665 7888884
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=224.37 Aligned_cols=268 Identities=9% Similarity=0.056 Sum_probs=205.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCC--
Q 008393 287 TSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADN-- 360 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~-- 360 (567)
..+|++++|+|||++||+++. ||++.||++++++.......+...+..++|+|| +++++++. +...+||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 567999999999999999887 999999999776665544444468999999999 77777775 45566665543
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECC----CeE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE----NVV 436 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~I 436 (567)
.+... .+..+. .+...+|+|+++.++++.+.++.+.+||+.+++...........+.|+|++..+++++.+ ..|
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEE
Confidence 33332 333222 344678899988766666666667799999998777766655889999999999988776 789
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCCCceEEEE--------
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCV-------- 505 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~-------- 505 (567)
++||+.+++.. .+..|...+..++|+|||++|+++..+ .|++||+.++ ... .+..+...+..++
T Consensus 178 ~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 178 FTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred EEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhcccccee
Confidence 99999988765 667788889999999999999976655 5999999876 333 5555655565566
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCc---EEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF---VKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iWd 567 (567)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred EcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888899999999999 55443 344678999999 9999998887743 55553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=230.75 Aligned_cols=268 Identities=9% Similarity=0.073 Sum_probs=189.5
Q ss_pred CeEEEEEcCCCCeEEEEeCC---------CcEEEEeCCCCeee--eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~d---------g~I~vwd~~~~~~~--~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.|.+++|||||++|++++.+ +.|++||+.+++.. .....|...+..++|+|||++|++++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 48899999999999999764 78889999988762 222345556899999999999999986 7899999
Q ss_pred cCCCCceeEEeccCCCc------------------EEEEEEcCCCCeEEEEEeCC-------------------------
Q 008393 358 ADNPGYSLRTFMGHSAS------------------VMSLDFHPNKDDLICSCDGD------------------------- 394 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~------------------V~~l~~~p~~~~li~s~~~d------------------------- 394 (567)
+.+ +........+... +.+++|+|||+.|+++...+
T Consensus 141 ~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 987 4444444443333 37899999998777554321
Q ss_pred --------CcEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEEC----CCeEEEEECCCCeEEEEecC-
Q 008393 395 --------GEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQG- 452 (567)
Q Consensus 395 --------g~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~- 452 (567)
..|++||+.+++....+.. .+..+.|+|++..+++... +..|++||+.++++...+..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 2799999998886555543 3466899999887766553 25899999999987766543
Q ss_pred CCCCee----EEEEcCCCCEEEEE-e-CC-------eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEc
Q 008393 453 HTKPID----SVCWDPSGELLASV-S-ED-------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGC 518 (567)
Q Consensus 453 h~~~V~----~l~~sp~g~~l~s~-s-~d-------~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~ 518 (567)
+...+. .++|+|||+.|+.. + .+ .|++||+..+....+...+......+.. ++|+|+++.|++.+.
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~ 379 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence 334443 78999999977754 3 22 3777773222220012333333344444 689999999987776
Q ss_pred C---CeEEEEECCCC---cEEEecc---ccCCeeEEEEecCCCEEEEEE
Q 008393 519 Y---QSLELWNMSEN---KTMTLTA---HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 519 d---g~I~iwd~~~~---~~~~~~~---h~~~V~~l~~spdg~~l~s~s 558 (567)
+ +.++||++... +...+.. |...+..++|+|||++|+...
T Consensus 380 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 380 EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 6 68889987643 2223333 677799999999999887654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=223.50 Aligned_cols=272 Identities=12% Similarity=0.105 Sum_probs=203.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC-----CC
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----PG 362 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~-----~~ 362 (567)
..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++||+.+ ..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666654 6999999999887654 44466778999999999999985 679999999986 33
Q ss_pred ceeEEeccCCCc--------------EEEEEEcCCCCeEEEEEe--------------------------------CCCc
Q 008393 363 YSLRTFMGHSAS--------------VMSLDFHPNKDDLICSCD--------------------------------GDGE 396 (567)
Q Consensus 363 ~~~~~~~~h~~~--------------V~~l~~~p~~~~li~s~~--------------------------------~dg~ 396 (567)
. ......+... +.++.|+|||+.++++.. .+..
T Consensus 158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 2 2222223232 488999999987775541 3468
Q ss_pred EEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEEEEECCC-----eEEEEECCCC-eEEEEecC-CCC---CeeEEE
Q 008393 397 IRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN-----VVSILDAETQ-ACRLSLQG-HTK---PIDSVC 461 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~-~~~~~~~~-h~~---~V~~l~ 461 (567)
|++||+.+++...... ..+..+.|+|++..+++++.++ .|++||+.++ ........ +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999988665442 2356899999999999888765 9999999998 44333322 222 346789
Q ss_pred EcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEcCC-----eEEEEECCCCcE
Q 008393 462 WDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQ-----SLELWNMSENKT 532 (567)
Q Consensus 462 ~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~ 532 (567)
|+| ||++|+++..+ .++||++.. ....+..+..+...+.. ++|+|+++.|++++.+. .|+.||+.+++.
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 394 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDT--TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT 394 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEET--TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEEC--CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence 999 99999988888 788888752 12456666666667776 79999999888776653 688888887764
Q ss_pred EEeccccCCeeEEEEecCCCEEEEEECC----CcEEEcC
Q 008393 533 MTLTAHEGLIAALAVSTETGYVASASHD----KFVKLWK 567 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~I~iWd 567 (567)
..+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 395 ~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 395 KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 444 467789999999999988876544 4588885
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-21 Score=194.19 Aligned_cols=257 Identities=10% Similarity=0.093 Sum_probs=180.0
Q ss_pred CCcEEEEeC--CCCeeee-eecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCc-eeEEeccCCCcEEEEEE
Q 008393 308 DKKAVLWHT--DTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY-SLRTFMGHSASVMSLDF 380 (567)
Q Consensus 308 dg~I~vwd~--~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~ 380 (567)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|++|++++... .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777665 4565543 3345567788899999999 655554 68999999975221 33444557778899999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-Ce--eeEEEeC------------CeeEEEEecCCCEEEEEE-CCCeEEEEECC-C
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINN-GS--CTRVFKG------------GTAQMRFQPHLGRYLAAA-AENVVSILDAE-T 443 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~-~~--~~~~~~~------------~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~-~ 443 (567)
+|+++.+++++..++.|.+|++.. +. .+..+.. ....++|+|++. ++++. .++.|.+||+. +
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCC
Confidence 999988876666889999999963 32 2333322 255799999999 55544 47899999998 5
Q ss_pred CeEE--EEecCC-CCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCC-CCCceEEEeecCC------CceEEEEEeCCCC
Q 008393 444 QACR--LSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCNG------NKFHSCVFHPTYP 511 (567)
Q Consensus 444 ~~~~--~~~~~h-~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~-~~~~~i~~~~~~~------~~i~~~~~sp~~~ 511 (567)
++.. ..+..+ ...+..++|+|||++|++++. + .|.+|++... .....+..+.... ..+..++|+|+|+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5433 222322 336788999999997777654 4 8999998742 1222233333322 4588899999999
Q ss_pred eEEEEE-cCCeEEEEECCCC---cEE-EeccccCCeeEEEEecCCCEEEEEECC-CcEEEc
Q 008393 512 SLLVIG-CYQSLELWNMSEN---KTM-TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 566 (567)
Q Consensus 512 ~l~~~~-~dg~I~iwd~~~~---~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW 566 (567)
+|+++. .++.|.+|++... +.+ .+..+...+..++|+|||++|++++.+ +.|.+|
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 886554 5789999999732 222 444566678999999999998888765 889998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-21 Score=192.19 Aligned_cols=268 Identities=13% Similarity=0.156 Sum_probs=189.8
Q ss_pred CCCccceeccCC-ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCe--eeeeecccCccEEEEE
Q 008393 263 DAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK--SKTNLEEHSSLITDVR 336 (567)
Q Consensus 263 d~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~ 336 (567)
+..+.+|.+... ..+..+. ...+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 344555555431 2222322 234556778899999999 555543 6899999998765 4445556778899999
Q ss_pred ECCCCCeEEEEe-CCCcEEEEEcCCCCce--eEEecc---------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-
Q 008393 337 FSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN- 403 (567)
Q Consensus 337 fsp~~~~l~s~s-~dg~I~iwd~~~~~~~--~~~~~~---------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~- 403 (567)
|+|++++|++++ .++.|.+|++...+.. +..+.. +...+.+++|+|+++ ++++...++.|++|++.
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence 999999998888 6799999999743332 222221 123488999999998 78787788999999998
Q ss_pred CCeeeEE--EeC----CeeEEEEecCCCEEEEEE-CCCeEEEEECCC--CeE--EEEecCCC------CCeeEEEEcCCC
Q 008393 404 NGSCTRV--FKG----GTAQMRFQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQGHT------KPIDSVCWDPSG 466 (567)
Q Consensus 404 ~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~~h~------~~V~~l~~sp~g 466 (567)
+++.... +.. ....++|+|++..++++. .++.|.+|++.. ++. +..+.... ..+..++|+|||
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 5543322 221 456789999999777765 478999998874 543 23333322 348889999999
Q ss_pred CEEEEE-eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEE--ECCCCcEE
Q 008393 467 ELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELW--NMSENKTM 533 (567)
Q Consensus 467 ~~l~s~-s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iw--d~~~~~~~ 533 (567)
++|+++ ..+ .|.+|++........+..+..+...+..++|+|++++|++++.+ +.|.+| |..+++..
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 987544 445 99999997433345666666666778899999999999998875 799999 55667655
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=200.76 Aligned_cols=285 Identities=12% Similarity=0.069 Sum_probs=205.5
Q ss_pred eeeeeccCCCCeEE-----EEEcCCCCeEEEEeC-CC--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 279 EANSVRASTSKVIC-----CHFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 279 ~~~~l~~h~~~V~~-----l~~s~dg~~lasg~~-dg--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
++..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+||++.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 45566677766666 889999999999887 66 48899999999888777777776678899999999999999
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEE--EcCCCCeEEEEE---------------------eCCCcEEEEECCCCee
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLD--FHPNKDDLICSC---------------------DGDGEIRYWSINNGSC 407 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~--~~p~~~~li~s~---------------------~~dg~I~iwd~~~~~~ 407 (567)
+.|++||+.+ +.....+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998 554455555666554444 478887655321 2347899999999876
Q ss_pred eEEEeC--CeeEEEEec-CCCEEEEEECC------CeEEEEECCCCeEEEEecCCC--CCeeEEEEcCCCCEEEEEeC--
Q 008393 408 TRVFKG--GTAQMRFQP-HLGRYLAAAAE------NVVSILDAETQACRLSLQGHT--KPIDSVCWDPSGELLASVSE-- 474 (567)
Q Consensus 408 ~~~~~~--~~~~~~~~~-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~-- 474 (567)
...... ....+.|+| ++..++.+..+ ..|.++|...++.. .+..+. ..+..++|+|||+.|+..+.
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 655443 467889999 88888877763 37888998776544 343343 25778999999997765443
Q ss_pred C----eEEEEeCCCCCCCceEEEeecCCCc---eEEEEEeCCCCeEEEE---------EcCCeEEEEECCCCcEEEeccc
Q 008393 475 D----SVRVWTVGSGSEGECVHELSCNGNK---FHSCVFHPTYPSLLVI---------GCYQSLELWNMSENKTMTLTAH 538 (567)
Q Consensus 475 d----~I~iwd~~~~~~~~~i~~~~~~~~~---i~~~~~sp~~~~l~~~---------~~dg~I~iwd~~~~~~~~~~~h 538 (567)
+ .|++||+.+++. ..+..+...... ...++|+|||+.|++. ..+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 2 299999988743 233333321000 1112799999988865 3456899999999888777766
Q ss_pred cC-----------CeeEEEEecCCCEEEEEE-CCCcEEEc
Q 008393 539 EG-----------LIAALAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 539 ~~-----------~V~~l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
.. .+.+++|+|||++|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688899999999888766 47777776
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=195.13 Aligned_cols=258 Identities=10% Similarity=0.066 Sum_probs=196.6
Q ss_pred CCCccceeccCCccceeeeeecc-CCC-CeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeeccc-----CccEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRA-STS-KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEH-----SSLITD 334 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~-h~~-~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h-----~~~V~~ 334 (567)
+..+.+||..++ +.+..+.. +.. .+.+++|+|||++++ ++..++.|.+||+.+++.+..+... ...+.+
T Consensus 10 ~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 10 PDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 456778887765 34444442 222 478999999998765 5556789999999999888776532 235778
Q ss_pred EEECCCCCeEEEEe------------CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 335 VRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 335 i~fsp~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
++|+|++++|++++ .++.|.+||+.+ +..+..+.. ...+.+++|+|+++.++++ ++.|++||+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~ 161 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDP 161 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEEC
Confidence 99999999998886 579999999987 555555543 4567889999999877744 689999999
Q ss_pred CCCeeeEEEeCCe--eEEEEecCCCEEEEEECCC------------------------eEEEEECCCCeEE-EEecCCCC
Q 008393 403 NNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAEN------------------------VVSILDAETQACR-LSLQGHTK 455 (567)
Q Consensus 403 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg------------------------~I~i~d~~~~~~~-~~~~~h~~ 455 (567)
.+++.+..+..+. ..+.|+|++..+++.+..+ .|.+||+.+++.. ..+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9999887776433 4457788877665554322 4789999998764 33445667
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 456 PIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.+.+++|+|+|++|+++ .+.|++||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 242 ~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 78899999999999888 349999999776 45555543 345788999999999999989999999999998876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=216.31 Aligned_cols=241 Identities=12% Similarity=0.152 Sum_probs=179.9
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----CeeeeeecccCcc--------------EEEEEECCCCCe
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSL--------------ITDVRFSPSMPR 343 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-----~~~~~~l~~h~~~--------------V~~i~fsp~~~~ 343 (567)
+..+...+.+++|+|||++||++ .++.|++||+.+ ++.......+... +.++.|+|||++
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~ 194 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC 194 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence 33455667789999999999995 689999999998 7776655544443 489999999999
Q ss_pred EEEEe---------------------------------CCCcEEEEEcCCCCceeEEe--ccCCCcEEEEEEcCCCCeEE
Q 008393 344 LATSS---------------------------------FDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLI 388 (567)
Q Consensus 344 l~s~s---------------------------------~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~li 388 (567)
|++++ .+..|++||+.+ +...... ..|...+.+++|+|+++.++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 99987 446799999987 4433322 25677899999999998776
Q ss_pred EEEeCCC-----cEEEEECCCC-eeeEEEe--CC-----eeEEEEec--CCCEEEEEECCCeEEEEECC-CCeEEEEecC
Q 008393 389 CSCDGDG-----EIRYWSINNG-SCTRVFK--GG-----TAQMRFQP--HLGRYLAAAAENVVSILDAE-TQACRLSLQG 452 (567)
Q Consensus 389 ~s~~~dg-----~I~iwd~~~~-~~~~~~~--~~-----~~~~~~~~--~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~ 452 (567)
++ +.++ .|++||+.++ ....... .. ...+.|+| ++..++++..++.+.+|++. ++..+..+..
T Consensus 274 ~~-~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VA-EVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EE-EECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EE-EeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 44 4454 8999999998 4333332 11 24579999 88877777778888888775 5677778888
Q ss_pred CCCCeeE-EEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC----Ce
Q 008393 453 HTKPIDS-VCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QS 521 (567)
Q Consensus 453 h~~~V~~-l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d----g~ 521 (567)
+...+.. ++|+|+|+.|++++.+ .|..||+.++. ...+. +...+..++|+|++++|++.+.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8888877 7999999988776644 46666666542 22222 45678899999999998887554 46
Q ss_pred EEEEECCCCc
Q 008393 522 LELWNMSENK 531 (567)
Q Consensus 522 I~iwd~~~~~ 531 (567)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999998887
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-20 Score=187.02 Aligned_cols=282 Identities=12% Similarity=0.087 Sum_probs=197.8
Q ss_pred CCCCccceeccC-CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC----CcEEEEeCCC--Cee--eeeecccCccE
Q 008393 262 RDAGGRGMDVSQ-GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDT--LKS--KTNLEEHSSLI 332 (567)
Q Consensus 262 ~d~~~~~~~~~~-~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d----g~I~vwd~~~--~~~--~~~l~~h~~~V 332 (567)
.+..+.+|.+.. ...++.+..+ |...+..++|+|||++|++++.+ +.|.+|+++. ++. +..+..+....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 345566665532 2234444444 67778899999999999998875 7999998765 443 33444456677
Q ss_pred EEEEECCCCCeEEEEe-CCCcEEEEEcCCCCcee---E--Eecc--------CCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 333 TDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSL---R--TFMG--------HSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~---~--~~~~--------h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
..+++ ++++|++++ .++.|.+|++...+... . ...+ +...+.+++|+|+++.+++++..++.|+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 88888 788777776 57899999997643321 1 1111 2334688999999998887777789999
Q ss_pred EEECCCCee------e------EE--Ee--CCeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeE--EEEec---CCCCC
Q 008393 399 YWSINNGSC------T------RV--FK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC--RLSLQ---GHTKP 456 (567)
Q Consensus 399 iwd~~~~~~------~------~~--~~--~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~--~~~~~---~h~~~ 456 (567)
+|++..... + .. .. .....++|+|++..++++. .++.|.+||+.+++. +..+. .+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG 260 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence 999875432 1 11 11 2456799999999888888 489999999987754 23332 23455
Q ss_pred eeEEEEcCCCCEEEEEe-C-C-eEEEEeCCC-CCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEE--ECCC
Q 008393 457 IDSVCWDPSGELLASVS-E-D-SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSE 529 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s-~-d-~I~iwd~~~-~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~ 529 (567)
...++|+|||++|+++. . + .|.+|++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+| |..+
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 78999999999886655 4 4 899999962 122334555555 56778899999999999988 56789885 5557
Q ss_pred CcEEEec--cccCCeeEEEEe
Q 008393 530 NKTMTLT--AHEGLIAALAVS 548 (567)
Q Consensus 530 ~~~~~~~--~h~~~V~~l~~s 548 (567)
++...+. .+...+.|+.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7766443 345678898885
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-21 Score=191.96 Aligned_cols=268 Identities=8% Similarity=0.030 Sum_probs=191.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEec
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
++++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+ +..+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEE
Confidence 45788889999999999999999999999988887543 2578999999998665 445689999999987 55555544
Q ss_pred cC------CCcEEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCCe---eeEEEe--CCeeEEEEecCCCEE
Q 008393 370 GH------SASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNGS---CTRVFK--GGTAQMRFQPHLGRY 427 (567)
Q Consensus 370 ~h------~~~V~~l~~~p~~~~li~s~~~-----------dg~I~iwd~~~~~---~~~~~~--~~~~~~~~~~~~~~l 427 (567)
.+ ...+..++|+|+++.++++... ++.|.+||+.+++ .+..+. ..+..++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2237789999999877755432 4899999998844 333433 3467788999988 6
Q ss_pred EEEECCCeEEEEECCCCeEEEEecCCCC------------------------CeeEEEEcCCCCEEEEEeCC--eEEEEe
Q 008393 428 LAAAAENVVSILDAETQACRLSLQGHTK------------------------PIDSVCWDPSGELLASVSED--SVRVWT 481 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~------------------------~V~~l~~sp~g~~l~s~s~d--~I~iwd 481 (567)
++++ +.|.+||+.+++.+..+..+.. ....+++++++......... .+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 6643 4499999999988877754320 23446666554322111111 233356
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeC-CCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
..++. ..+..+......+..++|+| ++++++++ ++.|++||+.+++..........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 65442 12223334566788999999 99998888 889999999999877444445568899999999999888889
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=186.71 Aligned_cols=234 Identities=8% Similarity=0.046 Sum_probs=189.0
Q ss_pred cCccEEEEEECCCCCeEEEEeC-------CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 328 HSSLITDVRFSPSMPRLATSSF-------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
....+..++|+|++++|++++. ++.|.+||..+ +..+..+.. ...+..++|+++++.+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3456889999999999888874 46899999987 555555543 34578899999999888888889999999
Q ss_pred ECCCCeeeEEEeCC------------eeEEEEecCCCEEEEEE--CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 401 SINNGSCTRVFKGG------------TAQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 401 d~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
|+.+++.+..+..+ ...+.|+|+++.++++. .++.|.+||..+++.+..+..+...+.+++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999988877652 46789999999888877 37899999999999998888666678899999999
Q ss_pred CEEEEEeCC-eEEEEeCCCCCCCceEEEeec----CCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccC
Q 008393 467 ELLASVSED-SVRVWTVGSGSEGECVHELSC----NGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEG 540 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~----~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~ 540 (567)
++|++++.+ .|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|++||+.+++.........
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 999999888 9999999876 45555443 45567889999999988888765 899999999988773322222
Q ss_pred CeeEEEEecCCCEEEEEE-CCCcEEEcC
Q 008393 541 LIAALAVSTETGYVASAS-HDKFVKLWK 567 (567)
Q Consensus 541 ~V~~l~~spdg~~l~s~s-~Dg~I~iWd 567 (567)
...++|+|++++|++++ .++.|.+||
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999766655 689999996
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-20 Score=187.21 Aligned_cols=263 Identities=12% Similarity=0.114 Sum_probs=186.4
Q ss_pred CeEEEEe----CCCcEEEEeC--CCCeeeeeecccCccEEEEEECCCCCeEEEEeCC----CcEEEEEcCCC-Cc--eeE
Q 008393 300 KLLATGG----HDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNP-GY--SLR 366 (567)
Q Consensus 300 ~~lasg~----~dg~I~vwd~--~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d----g~I~iwd~~~~-~~--~~~ 366 (567)
.++++|+ .++.|.+|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|+++.. +. .+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3555664 3568888866 4555443322277778899999999999999886 79999998763 22 233
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----E--eC-----------CeeEEEEecCCCEEEE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----F--KG-----------GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~--~~-----------~~~~~~~~~~~~~l~~ 429 (567)
....+...+..+++ +++.++++...++.|.+|++.....+.. + .+ +...++|+|++.++++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 33445667788888 7777776766789999999975433211 1 11 2366999999998877
Q ss_pred EEC-CCeEEEEECCCCe-------E------EEEecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEE
Q 008393 430 AAA-ENVVSILDAETQA-------C------RLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 430 ~~~-dg~I~i~d~~~~~-------~------~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~ 493 (567)
+.. ++.|.+|++.... . ......+...+..++|+|+|++|++++. + .|.+|++.++. ...+..
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~~ 250 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-LDEIQT 250 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-EEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-eEEeEE
Confidence 775 7899999877532 1 1222334566789999999998888874 5 99999998542 122333
Q ss_pred ee---cCCCceEEEEEeCCCCeEEEEEcC--CeEEEEECC--CCcEE---EeccccCCeeEEEEecCCCEEEEEE-CCCc
Q 008393 494 LS---CNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKF 562 (567)
Q Consensus 494 ~~---~~~~~i~~~~~sp~~~~l~~~~~d--g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~ 562 (567)
+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+|+|++|++++ .++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence 32 233456799999999999887765 799999986 44432 2233 55788999999999998888 5788
Q ss_pred EEEc
Q 008393 563 VKLW 566 (567)
Q Consensus 563 I~iW 566 (567)
|.+|
T Consensus 330 v~v~ 333 (361)
T 3scy_A 330 IQIF 333 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=195.37 Aligned_cols=239 Identities=11% Similarity=0.117 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe----------eeee-----ecccCccEEEEEECCCCCeEE----EE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----------SKTN-----LEEHSSLITDVRFSPSMPRLA----TS 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~----------~~~~-----l~~h~~~V~~i~fsp~~~~l~----s~ 347 (567)
...+.++++++++.+|++++.++ |+||+..... .... ...+...|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44678999999999999999888 8888753110 0110 113566799999999999999 78
Q ss_pred eCCCcEEEEEcCCC-----C--c---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CC
Q 008393 348 SFDKTVRVWDADNP-----G--Y---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG 414 (567)
Q Consensus 348 s~dg~I~iwd~~~~-----~--~---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~ 414 (567)
+.|+.|+|||+.+. . . .+..+.+|...|.+++|+|+...++++++.||.|++||++++..+.... ..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998652 1 1 2456677999999999999866788899999999999999987665543 36
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-------CCeeEEEEcCCCCEEEEEe-CC-------eEEE
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVS-ED-------SVRV 479 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-------~~V~~l~~sp~g~~l~s~s-~d-------~I~i 479 (567)
+.+++|+|++..+++++.|+.|++||.+ ++....+..|. ..|.+++|++++.++++.+ .+ .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 8899999999999999999999999998 55555554432 3789999999988876544 21 3999
Q ss_pred EeCCCCCC--CceEEEee-------cCCCceEEEEEeCCCCeEEEEEcCC-eEEEEEC
Q 008393 480 WTVGSGSE--GECVHELS-------CNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM 527 (567)
Q Consensus 480 wd~~~~~~--~~~i~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~ 527 (567)
|+++.... ...+..+. ....+...+.+-++.+++++++... .|.|+..
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 99986532 12222221 1222333444557778777776543 4555543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=218.08 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=199.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc---cEEEEEECCCCCeEEEEeC---------CCcEEEEEcC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSF---------DKTVRVWDAD 359 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~---~V~~i~fsp~~~~l~s~s~---------dg~I~iwd~~ 359 (567)
+++|+|||++++++ .|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 78999999666554 699999999999998887776654 4899999999999999876 7899999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---------------------eeEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---------------------TAQM 418 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---------------------~~~~ 418 (567)
+ +..+.. ......+..++|+|||+.++++ . ++.|++||+.+++.......+ ...+
T Consensus 99 ~-g~~~~~-~~l~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 N-GEFVRG-NELPRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp T-TEECCS-SCCCSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred C-Cccccc-eecCcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 7 443100 1123568899999999877754 3 789999999988765433221 1479
Q ss_pred EEecCCCEEEEEECCC----------------------------------eEEEEECCCCeEE---E-----EecCCCCC
Q 008393 419 RFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACR---L-----SLQGHTKP 456 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~---~-----~~~~h~~~ 456 (567)
.|+|++..|++++.+. .|++||+.+++.+ . .+.+|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999887642 7889999988642 1 13457788
Q ss_pred eeEEEEcCCCCEEEEEeCC-----eEEEEe----CCCCCCCceEE-EeecCCCceE-----EEEEeCCCCeEEEE--EcC
Q 008393 457 IDSVCWDPSGELLASVSED-----SVRVWT----VGSGSEGECVH-ELSCNGNKFH-----SCVFHPTYPSLLVI--GCY 519 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d-----~I~iwd----~~~~~~~~~i~-~~~~~~~~i~-----~~~~sp~~~~l~~~--~~d 519 (567)
+.+++|+||++++++.... .|.+|| +.++.....+. ....+...+. .+.|+|||+.|+.. ..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999998877774422 488899 76653322221 0134455554 77999999977653 334
Q ss_pred C--eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC-----CcEEEcC
Q 008393 520 Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-----KFVKLWK 567 (567)
Q Consensus 520 g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iWd 567 (567)
+ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 335 g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 335 GYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 4 7888999888866777777778888888 88887776665 7788873
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=209.37 Aligned_cols=269 Identities=13% Similarity=0.050 Sum_probs=185.2
Q ss_pred CeEEEEEcCCCCeEEEEeC---------CCcEEEEeCCCCeee--eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~---------dg~I~vwd~~~~~~~--~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.|.+++|||||++||+++. ++.|++||+.+++.+ ..+ ...+..++|+|||++|+++. ++.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 4779999999999998876 789999999998873 222 24688999999999999986 77999999
Q ss_pred cCCCCceeEEeccCCCcE-----------------EEEEEcCCCCeEEEEEeCCC-------------------------
Q 008393 358 ADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDG------------------------- 395 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~li~s~~~dg------------------------- 395 (567)
+.++.....+..++...| .+++|+|||+.|++....++
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 987433211223333323 48999999987775443322
Q ss_pred --------cEEEEECCCCeee--EEE---------eCCeeEEEEecCCCEEEEE-ECC----CeEEEEE----CCCCeEE
Q 008393 396 --------EIRYWSINNGSCT--RVF---------KGGTAQMRFQPHLGRYLAA-AAE----NVVSILD----AETQACR 447 (567)
Q Consensus 396 --------~I~iwd~~~~~~~--~~~---------~~~~~~~~~~~~~~~l~~~-~~d----g~I~i~d----~~~~~~~ 447 (567)
.|++||+.+++.. ..+ ...+..++|+|++ .+++. ... ..|.+|| +.++++.
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999988753 111 1235678999995 45444 222 2588999 8887765
Q ss_pred EEe----cCCCCCee-----EEEEcCCCCEEEE--EeCC---eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 448 LSL----QGHTKPID-----SVCWDPSGELLAS--VSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 448 ~~~----~~h~~~V~-----~l~~sp~g~~l~s--~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
..+ .+|...+. .++|+|||+.|+. ...+ .|.+||+.++. ...+..+...+..+.+. +++.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEE
Confidence 544 46777776 8999999996554 3233 58888886653 33444455567777777 88888
Q ss_pred EEEEcC-----CeEEEEECCC--C--cEEEec----cccCCeeEEEEecCCCEEEEE-ECC--CcEEEcC
Q 008393 514 LVIGCY-----QSLELWNMSE--N--KTMTLT----AHEGLIAALAVSTETGYVASA-SHD--KFVKLWK 567 (567)
Q Consensus 514 ~~~~~d-----g~I~iwd~~~--~--~~~~~~----~h~~~V~~l~~spdg~~l~s~-s~D--g~I~iWd 567 (567)
+..+.+ +.+++|.+.. + +...+. +|...+..+.|+|++++|+.. +.+ ..+.+||
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 888765 6777777643 4 223332 266678899999999887754 332 3455554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-19 Score=179.78 Aligned_cols=265 Identities=11% Similarity=0.069 Sum_probs=183.0
Q ss_pred eEEEEeCC--CcEEEEeC--CCCeeeee--ec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC-CCCceeEEecc-C
Q 008393 301 LLATGGHD--KKAVLWHT--DTLKSKTN--LE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-NPGYSLRTFMG-H 371 (567)
Q Consensus 301 ~lasg~~d--g~I~vwd~--~~~~~~~~--l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~-h 371 (567)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+|++. + +........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeec
Confidence 45566553 46777765 45654322 11 233468899999999999999888 89999997 4 444332221 1
Q ss_pred CCcEEEEEEcCCCCe-EEEEEe-------------CCCcEEEEECC-CCeeeEEEe-------CCeeEEEEecCCCEEEE
Q 008393 372 SASVMSLDFHPNKDD-LICSCD-------------GDGEIRYWSIN-NGSCTRVFK-------GGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~-li~s~~-------------~dg~I~iwd~~-~~~~~~~~~-------~~~~~~~~~~~~~~l~~ 429 (567)
.+.+.+++|+|+++. +++++. .++.+.+|++. .++....+. .....++|+|++..+++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123556899999886 344543 68999999997 465543332 35778999999998887
Q ss_pred EEC-CCeEEEEECC-CCeEE--EEec--CCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCC--CCCC---ceEEEeec
Q 008393 430 AAA-ENVVSILDAE-TQACR--LSLQ--GHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGS--GSEG---ECVHELSC 496 (567)
Q Consensus 430 ~~~-dg~I~i~d~~-~~~~~--~~~~--~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~--~~~~---~~i~~~~~ 496 (567)
+.. ++.|.+||+. +++.. ..+. .|...+..++|+|+|++|++++. + .|.+|++.. +... ..+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 765 6899999998 67543 3333 24567899999999999988875 4 899998753 3211 01112211
Q ss_pred C----CC------ceEEEE-EeCCCCeEEEEEcC-C-----eEEEEECC-CCcEEE----eccccCCeeEEEEec---CC
Q 008393 497 N----GN------KFHSCV-FHPTYPSLLVIGCY-Q-----SLELWNMS-ENKTMT----LTAHEGLIAALAVST---ET 551 (567)
Q Consensus 497 ~----~~------~i~~~~-~sp~~~~l~~~~~d-g-----~I~iwd~~-~~~~~~----~~~h~~~V~~l~~sp---dg 551 (567)
. .. .+..++ |+|||++|+++..+ + .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 99999998887653 2 89999996 565442 223555678899999 89
Q ss_pred CEEEEEECC-CcEEEcC
Q 008393 552 GYVASASHD-KFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~D-g~I~iWd 567 (567)
++|++++.+ +.|+||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999865 8999995
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=187.10 Aligned_cols=270 Identities=12% Similarity=0.029 Sum_probs=187.1
Q ss_pred eEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 290 VICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
+.+++|+|||++|+..... ..|.+||+.+++.......+......+.|+|++++|+.++.++.|++||+.+ +....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEE
Confidence 6788999999998877543 4788999998876555444433333478999999999999999999999987 44444
Q ss_pred EeccCCCcEEE-------------------EEEcCCCCeEEEEE----eCCCcEEEEECCCCeeeEEEe--CCeeEEEEe
Q 008393 367 TFMGHSASVMS-------------------LDFHPNKDDLICSC----DGDGEIRYWSINNGSCTRVFK--GGTAQMRFQ 421 (567)
Q Consensus 367 ~~~~h~~~V~~-------------------l~~~p~~~~li~s~----~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~ 421 (567)
....+...... +.|+|+++.+++.. ..+..|++||+.+++...... .....+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 44434433222 34567766554332 456789999999987665543 346778899
Q ss_pred c-CCCEEEEEECC------CeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCC----e--EEEEeCCCCCC
Q 008393 422 P-HLGRYLAAAAE------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED----S--VRVWTVGSGSE 487 (567)
Q Consensus 422 ~-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d----~--I~iwd~~~~~~ 487 (567)
| ++..++.++.+ ..|.+||+..++........ ...+..++|+|+|++|+.++.+ . |++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 67777776653 46899998776543332211 2257789999999977766421 4 99999987632
Q ss_pred CceEEEeecCCCceEEEEEeC-CCCeEEEEE----------------cCCeEEEEECCCCcEEEeccccC----------
Q 008393 488 GECVHELSCNGNKFHSCVFHP-TYPSLLVIG----------------CYQSLELWNMSENKTMTLTAHEG---------- 540 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~----------------~dg~I~iwd~~~~~~~~~~~h~~---------- 540 (567)
..+..+. ... +.|+| ++++|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 123 79999 999887755 24689999999887666665554
Q ss_pred -CeeEEEEecCCCEEEEEEC-CCcEEEc
Q 008393 541 -LIAALAVSTETGYVASASH-DKFVKLW 566 (567)
Q Consensus 541 -~V~~l~~spdg~~l~s~s~-Dg~I~iW 566 (567)
.+..++|+|+|++|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998887765 5666665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=173.39 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=159.7
Q ss_pred EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcC
Q 008393 304 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHP 382 (567)
Q Consensus 304 sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p 382 (567)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+.+........+ ...|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3457899999999988876 4556889999999999999999987 7899999998723334444444 46788999999
Q ss_pred CCCeEEEEEe-CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEE
Q 008393 383 NKDDLICSCD-GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 461 (567)
Q Consensus 383 ~~~~li~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~ 461 (567)
++..+++++. .++.+.+|.+. ..+++. ..+..+ ..+..++
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~-------------------------------------~~~~~~-~~~~~~-~~~~~~~ 135 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLP-------------------------------------STGGTP-RLMTKN-LPSYWHG 135 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEE-------------------------------------TTCCCC-EECCSS-SSEEEEE
T ss_pred CCCEEEEEEeCCCCcceEEEEE-------------------------------------CCCCce-EEeecC-CCccceE
Confidence 9886664432 23344444322 111111 122222 3478899
Q ss_pred EcCCCCEEE-EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECC--CCcEEEec
Q 008393 462 WDPSGELLA-SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS--ENKTMTLT 536 (567)
Q Consensus 462 ~sp~g~~l~-s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~--~~~~~~~~ 536 (567)
|+|++++|+ ++..+ .++||++.... .....+..+...+.+++|+|++++|++++. ++.+.+|++. .+....+.
T Consensus 136 ~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 136 WSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred ECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 999999877 56666 88888864321 234556667788999999999998888774 7788888764 45555777
Q ss_pred cccCCeeEEEEecCCCEEEEEECC-----------CcEEEcC
Q 008393 537 AHEGLIAALAVSTETGYVASASHD-----------KFVKLWK 567 (567)
Q Consensus 537 ~h~~~V~~l~~spdg~~l~s~s~D-----------g~I~iWd 567 (567)
.|...+.+++|+|++++|++++.+ +.|++||
T Consensus 214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 888889999999999999988876 4588885
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-18 Score=172.33 Aligned_cols=276 Identities=12% Similarity=0.076 Sum_probs=201.8
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC----------CCcEEEEeCCCCeeeeeeccc----
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH---- 328 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----------dg~I~vwd~~~~~~~~~l~~h---- 328 (567)
|..+.+||..++ +.+..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+.++...
T Consensus 30 d~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 30 ESRVHVYDYTNG---KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GCEEEEEETTTC---CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred cCeEEEEECCCC---eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 445667776655 344556666555 8999999999998863 678999999999988887642
Q ss_pred --CccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 329 --SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 329 --~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
......++|+|+|++|+++.. ++.|.+||+.+ ...+.. +. +.. ...+.+.|++...+++.+.||.+.+|++.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 345678999999999998874 58899999998 555555 43 222 23466788876677788899999999987
Q ss_pred C-CeeeEEEe------C--CeeEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecCC----------CCCeeEEEE
Q 008393 404 N-GSCTRVFK------G--GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGH----------TKPIDSVCW 462 (567)
Q Consensus 404 ~-~~~~~~~~------~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h----------~~~V~~l~~ 462 (567)
. ++...... . ....+.+.+++..++..+.++.|.++|+.... ....+... ......++|
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 5 55442211 1 11122345667788888888999999987553 22222110 011223789
Q ss_pred cCCCCEEEEEeC-----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 463 DPSGELLASVSE-----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 463 sp~g~~l~s~s~-----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+++++.++++.. . .|.+||+.++ +.+..+..+. ...++|+|+|++|++++. +.|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 999887776643 3 7999999876 7788887766 899999999999998887 99999999999
Q ss_pred --cEEEe-ccccCCeeEEEEecCCC
Q 008393 531 --KTMTL-TAHEGLIAALAVSTETG 552 (567)
Q Consensus 531 --~~~~~-~~h~~~V~~l~~spdg~ 552 (567)
+.+.. ..+......++++|+|+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 87744 57778889999999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=194.51 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=174.8
Q ss_pred cCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCC-CcEEEEEEcCCCCeEEEEEeC---CCcEEEEEC
Q 008393 328 HSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDG---DGEIRYWSI 402 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~---dg~I~iwd~ 402 (567)
+...|.+++|+|||++||+++. ||+++||++++ +. ...+..|. ..|..++|+|+ .++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~-~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GE-TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TE-EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcC-CC-cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 99999999964 44 34555555 68999999998 57767764 454556544
Q ss_pred CC---CeeeEEEe--CCeeEEEEecCCCE-EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 403 NN---GSCTRVFK--GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 403 ~~---~~~~~~~~--~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
.. +... .+. ......+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcC
Confidence 32 2222 222 23456789999865 4555556666799999987765554333 789999999999976643
Q ss_pred ----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcEEEeccccCCeeEEE---
Q 008393 476 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTAHEGLIAALA--- 546 (567)
Q Consensus 476 ----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~h~~~V~~l~--- 546 (567)
.|++||+.++. ...+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcc
Confidence 59999998763 235567778889999999999999888888 89999999988776667777787777
Q ss_pred -----EecCCCEEEEEECCCcEEEcC
Q 008393 547 -----VSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 547 -----~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+|||.++++++.||.++||+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=194.68 Aligned_cols=263 Identities=12% Similarity=0.086 Sum_probs=190.7
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-----EEEEEECCCCCeEEEEeCC---------CcEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD---------KTVR 354 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-----V~~i~fsp~~~~l~s~s~d---------g~I~ 354 (567)
...+++|+|||++|+++ |+.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45589999999999886 999999999999988888877643 2447899999999999876 5667
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------------------
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------------------- 414 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-------------------- 414 (567)
+||+.+ +. ...+..|...+...+|+|||+.++++ .|+.|++|++.++...+....+
T Consensus 96 ~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 999997 44 34567788899999999999987754 3789999999988765432211
Q ss_pred -eeEEEEecCCCEEEEEECCC------------------------------------eEEEEECCC---C---eEEEEec
Q 008393 415 -TAQMRFQPHLGRYLAAAAEN------------------------------------VVSILDAET---Q---ACRLSLQ 451 (567)
Q Consensus 415 -~~~~~~~~~~~~l~~~~~dg------------------------------------~I~i~d~~~---~---~~~~~~~ 451 (567)
...+.|+|++..|+.+..|. .|++||+.+ + +.. .+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~ 250 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QIT 250 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EEC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Eec
Confidence 12478999999988875321 588899998 7 333 333
Q ss_pred ------CCCCCeeEEEEcCCCCEEEEEe----CC-eEEEEeCCCCCC---CceEEEe--ecCCCceE-----EEEEeCCC
Q 008393 452 ------GHTKPIDSVCWDPSGELLASVS----ED-SVRVWTVGSGSE---GECVHEL--SCNGNKFH-----SCVFHPTY 510 (567)
Q Consensus 452 ------~h~~~V~~l~~sp~g~~l~s~s----~d-~I~iwd~~~~~~---~~~i~~~--~~~~~~i~-----~~~~sp~~ 510 (567)
+|...+..++|+|||++++... .+ .|++||+.++.. ...+..+ ..+...+. ..+|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 3777899999999999766553 22 699999988751 0001111 23333333 67899999
Q ss_pred CeEE-EEEcC-C--eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 511 PSLL-VIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 511 ~~l~-~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+.|+ ..+.. | .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 9877 56543 3 799999998887777666666766543 44666554443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-18 Score=173.59 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=173.1
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeeccc-CccEEEEEECCCCCe--EEEEe-------------
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEH-SSLITDVRFSPSMPR--LATSS------------- 348 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~h-~~~V~~i~fsp~~~~--l~s~s------------- 348 (567)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34467789999999999999887 99999997 77765433211 123556899999994 45553
Q ss_pred CCCcEEEEEcCCCCceeEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeee--EEEe-----CCee
Q 008393 349 FDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCT--RVFK-----GGTA 416 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~~~~~--~~~~-----~~~~ 416 (567)
.++.+.+|+++..+.....+. .+...+.+++|+|+|+.++++...++.|++||+. +++.. ..+. ....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999985454433332 2567899999999998776555457899999998 67643 2332 2367
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEECC--CCeEEE---Eec---C----CCC------CeeEEE-EcCCCCEEEEEeC--
Q 008393 417 QMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRL---SLQ---G----HTK------PIDSVC-WDPSGELLASVSE-- 474 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~~~~---~~~---~----h~~------~V~~l~-~sp~g~~l~s~s~-- 474 (567)
.++|+|++..++++.. ++.|.+|+.. +++... .+. . |.. .+..++ |+|||++|+++..
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 7899999999888876 6899998765 555421 222 1 122 478999 9999998877653
Q ss_pred C-----eEEEEeCC-CCCCCceEE-EeecCCCceEEEEEeC---CCCeEEEEEcC-CeEEEEECCCC
Q 008393 475 D-----SVRVWTVG-SGSEGECVH-ELSCNGNKFHSCVFHP---TYPSLLVIGCY-QSLELWNMSEN 530 (567)
Q Consensus 475 d-----~I~iwd~~-~~~~~~~i~-~~~~~~~~i~~~~~sp---~~~~l~~~~~d-g~I~iwd~~~~ 530 (567)
+ .|.+|++. ++. ...+. ....+......++|+| +|++|++++.+ +.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 69999996 332 12111 2333444566789999 89999999875 89999998766
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-18 Score=169.80 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=177.2
Q ss_pred CCCccceeccCCccceeeeeeccCC-CCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeeccc------CccEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEH------SSLITD 334 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h------~~~V~~ 334 (567)
+..+.+||..++ +.+..+..+. ..+..++|+|||++++ ++..++.|.+||+.+++.+..+..+ ...+.+
T Consensus 20 ~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence 446778887766 3444444332 2577999999998665 4556899999999999988777633 234788
Q ss_pred EEECCCCCeEEEEeCC------------CcEEEEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 335 VRFSPSMPRLATSSFD------------KTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 335 i~fsp~~~~l~s~s~d------------g~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
++|+|++++|++++.+ +.|.+||+.+.. ..+..+. +...+.+++|+|+++ +++ ++ +.|++|
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~ 171 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKM 171 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEE
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEE
Confidence 9999999999998865 899999998622 1223333 344688999999988 654 43 349999
Q ss_pred ECCCCeeeEEEeCCe---------------------------eEEEEecCCCEEEEEE-CCCeEEEEECCCCeEE-EEec
Q 008393 401 SINNGSCTRVFKGGT---------------------------AQMRFQPHLGRYLAAA-AENVVSILDAETQACR-LSLQ 451 (567)
Q Consensus 401 d~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~-~~~~ 451 (567)
|+.+++.+..+..+. ..+.+.+++....... ....+..+|..+++.. ..+.
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 999998887765331 1233333321110000 0112223555554322 2233
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 452 GHTKPIDSVCWDP-SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 452 ~h~~~V~~l~~sp-~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.+...+.+++|+| ++++|+++ .+.|.+||+.++ +.+..+.. ...+..++|+|++++|++++.++.|++||+.++
T Consensus 252 ~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 3566788999999 99999988 449999999876 45555543 345678999999999999888899999999998
Q ss_pred cEE
Q 008393 531 KTM 533 (567)
Q Consensus 531 ~~~ 533 (567)
+.+
T Consensus 327 ~~~ 329 (349)
T 1jmx_B 327 EKV 329 (349)
T ss_dssp EEE
T ss_pred cee
Confidence 876
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=180.34 Aligned_cols=210 Identities=13% Similarity=0.185 Sum_probs=157.4
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC-------C--ceeE-----EeccCCCc
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP-------G--YSLR-----TFMGHSAS 374 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~-------~--~~~~-----~~~~h~~~ 374 (567)
+.|++|+.... .....++.+++++++.+|++++.|+ |+||+.... . ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 45777754311 1334588999999999999999998 999875320 0 0111 11235678
Q ss_pred EEEEEEcCCCCeEEE---EEeCCCcEEEEECCCC--------ee---eEEE---eCCeeEEEEecC-CCEEEEEECCCeE
Q 008393 375 VMSLDFHPNKDDLIC---SCDGDGEIRYWSINNG--------SC---TRVF---KGGTAQMRFQPH-LGRYLAAAAENVV 436 (567)
Q Consensus 375 V~~l~~~p~~~~li~---s~~~dg~I~iwd~~~~--------~~---~~~~---~~~~~~~~~~~~-~~~l~~~~~dg~I 436 (567)
|.+++|+|++..+++ +++.|+.|++||+.++ +. +..+ ...+.+++|+|+ +..+++++.|+.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999887665 7888999999998764 22 2222 346889999998 6788889999999
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-------CCceEEEEEeC
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHP 508 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------~~~i~~~~~sp 508 (567)
++||++++..+....+|...|.+++|+|+|++|++++.| .|++||++ + .....+..+ ...+.++.|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 999999998777777889999999999999999999999 99999997 3 233333322 23789999999
Q ss_pred CCCeEEEEE-cCC------eEEEEECCCC
Q 008393 509 TYPSLLVIG-CYQ------SLELWNMSEN 530 (567)
Q Consensus 509 ~~~~l~~~~-~dg------~I~iwd~~~~ 530 (567)
++.++++.+ .+| .+++|++.+.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 887775543 333 4999999865
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=168.13 Aligned_cols=262 Identities=9% Similarity=0.043 Sum_probs=188.1
Q ss_pred CCCeEEEEe------CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC----------CCcEEEEEcCCC
Q 008393 298 DGKLLATGG------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~------~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~----------dg~I~iwd~~~~ 361 (567)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+|++++|+++.. ++.|.+||+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t- 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK- 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-
Confidence 445555543 3789999999999999888877655 8999999999998863 67799999987
Q ss_pred CceeEEeccC------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEE-EeCC-eeEEEEecCC-CEEEEEE
Q 008393 362 GYSLRTFMGH------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGG-TAQMRFQPHL-GRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~-~~~~-~~~~~~~~~~-~~l~~~~ 431 (567)
.+.+..+... ......++|+|+|++++++... ++.|.+||+.+++.+.. +..+ ...+.+.|++ ..+++.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 5555555422 3456789999999988866544 68999999999988877 5432 2235567765 5677888
Q ss_pred CCCeEEEEECCC-CeEEEE------ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-----
Q 008393 432 AENVVSILDAET-QACRLS------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG----- 498 (567)
Q Consensus 432 ~dg~I~i~d~~~-~~~~~~------~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~----- 498 (567)
.||.+.+|+... ++.... +..+..++ .+.+++++..++..+.+ .|.++|+.... ...+..+....
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCccccc
Confidence 899999999865 554422 22222232 33446777777777777 99999997542 12222221110
Q ss_pred -----CceEEEEEeCCCCeEEEEEc-----------CCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 499 -----NKFHSCVFHPTYPSLLVIGC-----------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 499 -----~~i~~~~~sp~~~~l~~~~~-----------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
.....++|+|++++++++.. .+.|.+||+.+++.+ .+..+. +.+++|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 11112689999998888764 348999999999887 555555 999999999999998887 9
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.|.+||
T Consensus 326 ~v~v~D 331 (361)
T 2oiz_A 326 NVNVYD 331 (361)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=186.15 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=176.7
Q ss_pred EEEEEcCCCCeEEEEeCC---------CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 291 ICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~d---------g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++|++.++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 358899999999998876 56779999998865 4677788899999999999999885 678999999874
Q ss_pred CceeEEeccCCCcE-----------------EEEEEcCCCCeEEEEEeCCC-----------------------------
Q 008393 362 GYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDG----------------------------- 395 (567)
Q Consensus 362 ~~~~~~~~~h~~~V-----------------~~l~~~p~~~~li~s~~~dg----------------------------- 395 (567)
.....+..++...+ ..+.|+|||+.|++....++
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 33222233333333 34899999998776543222
Q ss_pred ------cEEEEECCC---C---eeeEEEe--------CCeeEEEEecCCCEEEEEECC----CeEEEEECCCCe----EE
Q 008393 396 ------EIRYWSINN---G---SCTRVFK--------GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQA----CR 447 (567)
Q Consensus 396 ------~I~iwd~~~---~---~~~~~~~--------~~~~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~----~~ 447 (567)
.|++||+.+ + +...... ..+..+.|+|++..++..... ..|.+||+.+++ +.
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 588899988 7 3333221 124678899998766555432 379999998876 22
Q ss_pred E--Ee--cCCCCCee-----EEEEcCCCCEEE-EEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 448 L--SL--QGHTKPID-----SVCWDPSGELLA-SVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 448 ~--~~--~~h~~~V~-----~l~~sp~g~~l~-s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
. .+ ..|...|. .+.|+|||+.|+ ..+.. .|++||+.++. ...+......+..+. .++++.|
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----~~~lT~g~~~v~~~~-~~d~~~i 377 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CTFITKGTWEVIGIE-ALTSDYL 377 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----CEESCCSSSCEEEEE-EECSSEE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----eEecccCCEEEEEEE-EEeCCEE
Confidence 1 11 44665554 789999999877 66532 69999987642 223333344455443 2447777
Q ss_pred EEEEcC-------CeEEEEECCCCcEE-Eec----cccCCeeEEEEecCCCEEEEEEC
Q 008393 514 LVIGCY-------QSLELWNMSENKTM-TLT----AHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 514 ~~~~~d-------g~I~iwd~~~~~~~-~~~----~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+..+.. ..|+..++.++... .+. .....+..+.|+|++++++....
T Consensus 378 ~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 378 YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 766654 25666677665443 232 12356889999999998765543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-17 Score=161.89 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCC------------------------CcEEEEeCCCCeeeeeec-ccCccEEEEEECCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHD------------------------KKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSM 341 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~d------------------------g~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~ 341 (567)
-+.|.+++++++|+++++...+ +.|.+||..+++.+..+. .+-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888777 479999999998877665 455678999999999
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEe---------ccCCCcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeEEE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTF---------MGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~~~~ 411 (567)
+++++...++.|++||.+.....+..+ .++......|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987532245555 345557899999994455666775 689999999 566666665
Q ss_pred eC-------------CeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEE---
Q 008393 412 KG-------------GTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV--- 472 (567)
Q Consensus 412 ~~-------------~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~--- 472 (567)
.. ....++++++++.++++. .++.|.+||..+++.+..+. .+...+..++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 31 267799999966666555 57899999999888888874 4566788999999 4333332
Q ss_pred ----eCC-eEEEEeCCCCCCCceEEEe---ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 473 ----SED-SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 473 ----s~d-~I~iwd~~~~~~~~~i~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..+ .|++||+.++ +.+..+ ..+......++++++|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 334 7999999877 455555 35566789999999997666667788999999754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=183.88 Aligned_cols=281 Identities=13% Similarity=0.102 Sum_probs=194.6
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEE--eCCCcEEEEeCCCCeeeeeecccCccEE---------EEEEC--CCCCe-EEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKTNLEEHSSLIT---------DVRFS--PSMPR-LAT 346 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg--~~dg~I~vwd~~~~~~~~~l~~h~~~V~---------~i~fs--p~~~~-l~s 346 (567)
..+.+|...|..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ ||+++ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999887667766 5588899998655555666776766666 66665 99998 777
Q ss_pred EeC-CCcEEEEEcCCCC-ceeEEecc-----CCCcEEEEEEcCCCCeEEEEEeCC----------CcEEEEECCC-----
Q 008393 347 SSF-DKTVRVWDADNPG-YSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGD----------GEIRYWSINN----- 404 (567)
Q Consensus 347 ~s~-dg~I~iwd~~~~~-~~~~~~~~-----h~~~V~~l~~~p~~~~li~s~~~d----------g~I~iwd~~~----- 404 (567)
++. +..|.+|++...+ .....+.. |...+.+++|+|||+.++++. .+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCcccc
Confidence 664 4556666665001 23455555 677889999999998777554 34 5899999988
Q ss_pred -CeeeEEE-e--CCeeEEEEecCCCEEEEEECC--------CeEEEEECC-CC---eEEEEecCCCCCeeEEEEcCCCCE
Q 008393 405 -GSCTRVF-K--GGTAQMRFQPHLGRYLAAAAE--------NVVSILDAE-TQ---ACRLSLQGHTKPIDSVCWDPSGEL 468 (567)
Q Consensus 405 -~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~d--------g~I~i~d~~-~~---~~~~~~~~h~~~V~~l~~sp~g~~ 468 (567)
++..... . .....+.|+|++..++.++.+ ..|++||+. ++ +......+|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5544333 2 234557899999999888754 379999999 56 454444556788999999999997
Q ss_pred EEEEeCC---eEEEEeCCCCCCCceEEEeecCCCc--------eEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEEe
Q 008393 469 LASVSED---SVRVWTVGSGSEGECVHELSCNGNK--------FHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTL 535 (567)
Q Consensus 469 l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~--------i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~ 535 (567)
++++..+ .|.+||+.++. .......+... +..++|++++.+++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 7777665 46666665442 22222222111 456789999998888888 887887 7777777677
Q ss_pred ccccCCeeEE-EEecCCCEEEEEECCCcEEEc
Q 008393 536 TAHEGLIAAL-AVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 536 ~~h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW 566 (567)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7787778777 554433344455556555554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=169.87 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=164.2
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE--ECCCCCeEEEEe-------------
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR--FSPSMPRLATSS------------- 348 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~--fsp~~~~l~s~s------------- 348 (567)
.+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+.... +++++++|+...
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 34444555678999999999999999999999999988777776766665444 489999887432
Q ss_pred ---------CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcC-CCCeEEEEEeC-----CCcEEEEECCCCeeeEEEeC
Q 008393 349 ---------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDG-----DGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 349 ---------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~li~s~~~-----dg~I~iwd~~~~~~~~~~~~ 413 (567)
.+..|++||+.+ +. ...+..+...+..+.|+| ++..++++... ...|.++|+..+........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKT-GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTT-CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred hhhhhhccCCcceEEEEECCC-Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 346799999987 33 344555677899999999 88777655532 34788888876654433332
Q ss_pred C----eeEEEEecCCCEEEEEEC-CC----eEEEEECCCCeEEE--EecCCCC---CeeEEEEcCCCCEEEEE-------
Q 008393 414 G----TAQMRFQPHLGRYLAAAA-EN----VVSILDAETQACRL--SLQGHTK---PIDSVCWDPSGELLASV------- 472 (567)
Q Consensus 414 ~----~~~~~~~~~~~~l~~~~~-dg----~I~i~d~~~~~~~~--~~~~h~~---~V~~l~~sp~g~~l~s~------- 472 (567)
. +....|+|++..++..+. ++ .|++||+.+++... .+.++.. ....++|+|||+.|+..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence 2 446789999998866554 22 39999999986433 3332100 01223799999988754
Q ss_pred --eCC-eEEEEeCCCCCCCceEEEeecCCC-----------ceEEEEEeCCCCeEEEEEc-CC--eEEEEECCC
Q 008393 473 --SED-SVRVWTVGSGSEGECVHELSCNGN-----------KFHSCVFHPTYPSLLVIGC-YQ--SLELWNMSE 529 (567)
Q Consensus 473 --s~d-~I~iwd~~~~~~~~~i~~~~~~~~-----------~i~~~~~sp~~~~l~~~~~-dg--~I~iwd~~~ 529 (567)
..+ .|++||+.++ .+..+..+.. .+..++|+|||+.|+..+. ++ .|+++++..
T Consensus 315 ~~~~~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNG----TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp --CCCCEEEEEETTTT----EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred ccCCCCEEEEEeccCC----ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 334 8999999875 2334444444 4677899999998888775 44 455555543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=160.09 Aligned_cols=251 Identities=12% Similarity=0.077 Sum_probs=175.3
Q ss_pred CeEEEEEcCCCCeEEEEe---------CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---C--cEE
Q 008393 289 KVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K--TVR 354 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~---------~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g--~I~ 354 (567)
.+..+++ ||++++... .++.|++||+.+++... + ..+..+.|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4566777 888887642 26789999999877543 3 568899999999999888754 3 377
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC--------------------------CCcEEEEECCCCeee
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--------------------------DGEIRYWSINNGSCT 408 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~--------------------------dg~I~iwd~~~~~~~ 408 (567)
+||+.+ +....... +.. +..++|+|+++.++++... ...|++||+.+++.+
T Consensus 89 ~~~~~~-g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLET-LSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTT-TEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCC-CceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876 44433333 334 9999999999888866532 357999999998763
Q ss_pred EEEe-CCeeEEEEecCCCEEEEEECC---------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---
Q 008393 409 RVFK-GGTAQMRFQPHLGRYLAAAAE---------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--- 475 (567)
Q Consensus 409 ~~~~-~~~~~~~~~~~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--- 475 (567)
..+. ..+..+.|+|++ .++++..+ ..|.++| +++.. .+..+ ..+..+ +|+|++|+.++.+
T Consensus 166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 3332 267788999998 66655443 2456666 55543 33334 445444 9999988877632
Q ss_pred ------eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 476 ------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
.|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+.+.|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence 577787 33 233333344566775 8999 88 88888999999999 8766666666677889999999
Q ss_pred cCCCEEEEEECCCcE-EEc
Q 008393 549 TETGYVASASHDKFV-KLW 566 (567)
Q Consensus 549 pdg~~l~s~s~Dg~I-~iW 566 (567)
+ .++++++.++.. .||
T Consensus 311 ~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 311 E--IVVYLKETATRLRELF 327 (347)
T ss_dssp S--SEEEEEECSSSCCEEE
T ss_pred C--cEEEEEcCCCChHHhe
Confidence 9 677777777654 555
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=158.59 Aligned_cols=266 Identities=11% Similarity=0.083 Sum_probs=188.9
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||.++ +.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEE
Confidence 456788899998888777888999999 4566677777778889999999999888888899999999987 443333
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEEEEEC------
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA------ 432 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~d----g~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~------ 432 (567)
...+...+.++++++++. ++++...+ +.|.+||..++.....+. .....+.+++++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335677899999999986 55455555 689999998877654433 23577889998765554443
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCC-CCCCceE-----EEeecCCCceEEE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGS-GSEGECV-----HELSCNGNKFHSC 504 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~-~~~~~~i-----~~~~~~~~~i~~~ 504 (567)
.+.|..||..+++..... .+...+..++|+++|++|+.+. .+ .|.+||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 357888887766544322 2334578999999998665554 44 899999964 2221111 11111 2467889
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccC------CeeEEEEecCCCEEEEEECC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG------LIAALAVSTETGYVASASHD 560 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~------~V~~l~~spdg~~l~s~s~D 560 (567)
+++++|+++++...++.|.+||........+..+.. .+.+++|+++++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877777778899999985433334433322 68999999998777666555
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-16 Score=151.02 Aligned_cols=237 Identities=11% Similarity=0.118 Sum_probs=169.7
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec------ccCccEEEEEE-CCCCCeEEEEeC-CCcEEE
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRF-SPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~------~h~~~V~~i~f-sp~~~~l~s~s~-dg~I~i 355 (567)
.+|-..+.+++++++|+++++...++.|.+||.+ ++.+..+. ++...+..+++ .+++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556778999999999988888889999999987 56665553 34467899999 466765555543 789999
Q ss_pred EEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 356 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 356 wd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
||.+ +..+..+. .+...+.++++.+++. ++++...++.|++||.. ++.+..+.
T Consensus 105 ~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~---------------------- 158 (286)
T 1q7f_A 105 YNQY--GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFG---------------------- 158 (286)
T ss_dssp ECTT--SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEE----------------------
T ss_pred ECCC--CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeC----------------------
Confidence 9954 44455553 3446789999999875 66576677888888854 22221110
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeCCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYP 511 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~ 511 (567)
...+...+..|+++++|+++++...+ .|++||... ..+..+... ...+..++++++|.
T Consensus 159 ---------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 159 ---------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp ---------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCC
T ss_pred ---------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCC
Confidence 01234567899999999977777666 999999743 345555433 25688999999998
Q ss_pred eEEEEEcCC-eEEEEECCCCcEEEecccc--CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQ-SLELWNMSENKTMTLTAHE--GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg-~I~iwd~~~~~~~~~~~h~--~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++...++ .|.+||........+..+. ..+.+++++|+|+++++ +.|+.|++|+
T Consensus 220 l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 777776675 9999997544443444333 34779999999987776 6799999995
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-15 Score=158.33 Aligned_cols=297 Identities=12% Similarity=0.055 Sum_probs=214.2
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEEC---
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS--- 338 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fs--- 338 (567)
..+.++|..++ +.+..+.. ...+.+++|+|||++|++++.|+.|.+||+. +++.+.++.... ....++|+
T Consensus 177 ~~V~viD~~t~---~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~ 251 (567)
T 1qks_A 177 GQIALIDGSTY---EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKME 251 (567)
T ss_dssp TEEEEEETTTC---CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCST
T ss_pred CeEEEEECCCC---eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEcccc
Confidence 34566776655 34444443 2356699999999999999999999999996 888888887544 36799999
Q ss_pred -CCCCeEEEEeC-CCcEEEEEcCCCCceeEEecc----------C-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 339 -PSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG----------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 339 -p~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
|+|+++++++. ++.|.|+|..+ .+.+..+.. | ...+..+.+++++..+++....+|.|.++|....
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred CCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 69998887765 58999999987 555554431 2 2268889999988888888888899999999876
Q ss_pred eeeEE--Ee--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC-----CCCCeeEEEEcCCCC-EEEEEe-
Q 008393 406 SCTRV--FK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGE-LLASVS- 473 (567)
Q Consensus 406 ~~~~~--~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-----h~~~V~~l~~sp~g~-~l~s~s- 473 (567)
+.... +. .....+.|+|++.+++++.. ++.|.++|+.+++.+..+.. |.+.-..+ ++|++. ++++..
T Consensus 331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM 409 (567)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence 53332 22 24457789999999888775 78999999999988776653 33222222 578754 444543
Q ss_pred CC-eEEEEeCCCCCC----CceEEEeecCCCceEEEEEeCCCCeEEEEEc-------CCeEEEEECCCC-----c-E-EE
Q 008393 474 ED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMSEN-----K-T-MT 534 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-------dg~I~iwd~~~~-----~-~-~~ 534 (567)
.+ .|.++|..+.+. .+.+..+......-..+.++|++++|++... .+.|.+||+.+. . . ..
T Consensus 410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~ 489 (567)
T 1qks_A 410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 489 (567)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence 33 899999987332 4677777765544455688999999999773 359999999876 2 1 12
Q ss_pred ec--------cccCCeeEEEEecCCCEEEEEEC-----CCcEEEcC
Q 008393 535 LT--------AHEGLIAALAVSTETGYVASASH-----DKFVKLWK 567 (567)
Q Consensus 535 ~~--------~h~~~V~~l~~spdg~~l~s~s~-----Dg~I~iWd 567 (567)
+. .....+..+.|+++|++|..+.+ ++.|.|+|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 21 12356889999999998776643 67887765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-16 Score=153.87 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=171.6
Q ss_pred CccEEEEEECCCCCeEEEEeCC------------------------CcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCC
Q 008393 329 SSLITDVRFSPSMPRLATSSFD------------------------KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 383 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~d------------------------g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~ 383 (567)
-..+.+|+++++|+++++...+ +.|.+||..+ +..+..+. ++...+..|+++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCC
Confidence 4569999999999988888777 4799999987 44444443 45568999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCe-eeEEEeC------------CeeEEEEec-CCCEEEEEE-CCCeEEEEECCCCeEEE
Q 008393 384 KDDLICSCDGDGEIRYWSINNGS-CTRVFKG------------GTAQMRFQP-HLGRYLAAA-AENVVSILDAETQACRL 448 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~------------~~~~~~~~~-~~~~l~~~~-~dg~I~i~d~~~~~~~~ 448 (567)
+. ++++...++.|++||..... .+..+.. ....++++| ++..+++.+ .++.|.+|| .+++.+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 66688888999999986553 4554421 467899999 544455544 589999999 5666666
Q ss_pred EecCC----------CCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEee--cCCCceEEEEEeCCCCeEE
Q 008393 449 SLQGH----------TKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 449 ~~~~h----------~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~--~~~~~i~~~~~sp~~~~l~ 514 (567)
.+... -.....|+++++ +.++++...+ .|++||..++ +.+..+. .....+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999998 6666666666 9999999765 4555553 3456788899999 33222
Q ss_pred EE-------EcCCeEEEEECCCCcEEEe----ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 515 VI-------GCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~-------~~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+. ..+..|++||+.+++.+.. ..+...+..|+++|+|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2334899999999988844 36777899999999998888888899999985
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=152.62 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=162.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCC---C--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC------------
Q 008393 288 SKVICCHFSSDGKLLATGGHD---K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------ 350 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~d---g--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d------------ 350 (567)
..+.+++|+|||++||.++.+ + .|.+|++.+++.......+ . +..+.|+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 568899999999999987754 2 4888899888766555444 3 9999999999998888642
Q ss_pred ---------------CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-------cEEEEECCCCeee
Q 008393 351 ---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------EIRYWSINNGSCT 408 (567)
Q Consensus 351 ---------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-------~I~iwd~~~~~~~ 408 (567)
..|++||+.+ +..+..+.. . .+..+.|+|++ +++++..+. ...+|.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTT-TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cceeecCcccccCccceEEEEECCC-CeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 5689999987 444244443 3 78899999998 665665442 3344443355544
Q ss_pred EEEeCCeeEEEEecCCCEEEEEECC--------CeEEEEECCCCeEEEEecCCCCCeeE-EEEcCCCCEEEEEeCC-eEE
Q 008393 409 RVFKGGTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDS-VCWDPSGELLASVSED-SVR 478 (567)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~V~~-l~~sp~g~~l~s~s~d-~I~ 478 (567)
..... .....++|++..+++++.+ ..|++|| +++.......+...+.. +.|+ ++ ++++++.+ .++
T Consensus 212 ~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 212 KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence 43333 3334459999988887754 4788888 66655555566777886 9999 88 88888888 899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE-EEEECCCCcEEEeccccCC
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL-ELWNMSENKTMTLTAHEGL 541 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I-~iwd~~~~~~~~~~~h~~~ 541 (567)
|| +.++ .. ..+..+...+..++|++ ..+++++.++.. .||.+. ++...+..|...
T Consensus 287 l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 287 LY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp EE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred EE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 99 8733 33 33344467789999999 667777776643 566555 655566665543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-14 Score=136.57 Aligned_cols=272 Identities=9% Similarity=-0.012 Sum_probs=191.6
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee-eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||...
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 34556789999999999988777668899999988 55433 2233557799999999998888777788899999863
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-e---CCeeEEEEecCCCEEEEEECCCeEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K---GGTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
......+......+.++++.+++. ++++...++.|.+||. +++..... . .....+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 322222223456789999999875 5556666889999998 55544332 2 2457788898876555555578999
Q ss_pred EEECCCCeEEEE-ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 438 ILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 438 i~d~~~~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
.||. +++.... +..+...+.+++++++|+++++...+ .|.+||. ++.. . ...+......+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-T-EFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-E-EEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6655432 33445678899999999977766555 8999998 5421 1 1222334567889999999984444
Q ss_pred EEcCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 516 IGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4544433 345567999999 8888777665454444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=170.35 Aligned_cols=251 Identities=10% Similarity=0.041 Sum_probs=168.9
Q ss_pred eeeeccCCCCeE---------EEEEc--CCCCe-EEEEeC-CCcEEEEeCC--CCeeeeeecc-----cCccEEEEEECC
Q 008393 280 ANSVRASTSKVI---------CCHFS--SDGKL-LATGGH-DKKAVLWHTD--TLKSKTNLEE-----HSSLITDVRFSP 339 (567)
Q Consensus 280 ~~~l~~h~~~V~---------~l~~s--~dg~~-lasg~~-dg~I~vwd~~--~~~~~~~l~~-----h~~~V~~i~fsp 339 (567)
...+..|...|. ..+|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 344555555544 55555 99998 776654 5677777775 2033445555 677899999999
Q ss_pred CCCeEEEEeCC----------CcEEEEEcCCCC----ceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCC-------CcE
Q 008393 340 SMPRLATSSFD----------KTVRVWDADNPG----YSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD-------GEI 397 (567)
Q Consensus 340 ~~~~l~s~s~d----------g~I~iwd~~~~~----~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~d-------g~I 397 (567)
||+.|++++.+ ..|++||+.+.. .....+. .+...+..++|+|||+.++++.... ..|
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 99999998877 579999998621 3345565 6667888999999998877555432 479
Q ss_pred EEEECC-CC---eeeEEEe---CCeeEEEEecCCCEEEEEECCC--eEEEEECCCCeEEEEecCCCCC--------eeEE
Q 008393 398 RYWSIN-NG---SCTRVFK---GGTAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQGHTKP--------IDSV 460 (567)
Q Consensus 398 ~iwd~~-~~---~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~--------V~~l 460 (567)
++||+. ++ +...... .....+.|+|++..++++..++ .|++||+.+++.......+... +..+
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceE
Confidence 999999 56 4444333 3567789999999555555566 7888888777765444333222 5678
Q ss_pred EEcCCCCEEEEEeCCeEEEE--eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE--EEcCC--eEEEEECCCCcEEE
Q 008393 461 CWDPSGELLASVSEDSVRVW--TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV--IGCYQ--SLELWNMSENKTMT 534 (567)
Q Consensus 461 ~~sp~g~~l~s~s~d~I~iw--d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~--~~~dg--~I~iwd~~~~~~~~ 534 (567)
+|++++++++++..+.++|| |+.++ .+..+..+...+..+ +++++..++. ++.+. .|++||+.+++...
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 300 APLANGLIAVVHGKGAAVLGILDPESG----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EECTTSCEEEEEBSSSCEEEEEETTTT----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred eEeCCCEEEEEEEcCccEEEEEECCCC----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 99999999888876655666 65443 356666666667665 1444544433 33333 67778888877664
Q ss_pred e
Q 008393 535 L 535 (567)
Q Consensus 535 ~ 535 (567)
+
T Consensus 375 l 375 (662)
T 3azo_A 375 I 375 (662)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-15 Score=147.70 Aligned_cols=249 Identities=10% Similarity=0.006 Sum_probs=184.4
Q ss_pred CCCcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEE
Q 008393 307 HDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 380 (567)
.++.|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+ .+.+..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEE
Confidence 47899999999998876652 122446778774 344555566679999999998 56666664 4567899999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEe
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSL 450 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~ 450 (567)
++++ .++++...++.|.+||..+++....+.. ....+++ +++.++++.. ++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 6665665799999999999998877653 2345666 5677777763 789999999999988877
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeC-----------CeEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEc
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSE-----------DSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~-----------d~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~ 518 (567)
... .....++++++|++++++.. +.|.+||..++ +....+... ......++|+|++++|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 653 34578999999997777654 37999999776 444444432 346889999999999988765
Q ss_pred CCeEEEEECCCCcEEE---eccccCCeeEEEEec-CCCEEEEE----ECCCcEEEcC
Q 008393 519 YQSLELWNMSENKTMT---LTAHEGLIAALAVST-ETGYVASA----SHDKFVKLWK 567 (567)
Q Consensus 519 dg~I~iwd~~~~~~~~---~~~h~~~V~~l~~sp-dg~~l~s~----s~Dg~I~iWd 567 (567)
.|++||..+++... +..+......++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 112246788999999 45555555 4678899886
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=167.15 Aligned_cols=243 Identities=8% Similarity=0.021 Sum_probs=176.0
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCC-----cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc-------
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 352 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg-----~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~------- 352 (567)
+|+..+..++|||||++||.+..++ .|++||+.+++.+.....+. .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555688999999999999876543 89999999998776433222 2678999999999999988766
Q ss_pred ---------EEEEEcCCCCce-eEEec--cCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCC------Ce-eeE
Q 008393 353 ---------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN------GS-CTR 409 (567)
Q Consensus 353 ---------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~------~~-~~~ 409 (567)
|++|++.++... ...+. .|...+..+.|+|+|+.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999874321 22223 355668899999999988866542 57899999986 42 233
Q ss_pred EEeCC--eeEEEEecCCCEEEEEECC----CeEEEEECCCCe--EEEEecCCCC--CeeEEEEcCCCCEEEEEeCC---e
Q 008393 410 VFKGG--TAQMRFQPHLGRYLAAAAE----NVVSILDAETQA--CRLSLQGHTK--PIDSVCWDPSGELLASVSED---S 476 (567)
Q Consensus 410 ~~~~~--~~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~--~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d---~ 476 (567)
.+..+ .....|+++++.+++.+.. ..|.+||+.++. ....+..|.. .+..++|++++.++++...+ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 33321 2233588999988887763 369999998864 1234444443 67889999888888888766 4
Q ss_pred EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCc
Q 008393 477 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENK 531 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~ 531 (567)
|++|++.++ ..+..+..+...+..+.++|++..|+..... +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 777787555 4556666667778889999999877655433 589999998877
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-14 Score=140.23 Aligned_cols=243 Identities=12% Similarity=0.090 Sum_probs=173.6
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC----CcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d----g~I~ 354 (567)
.+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 445566777788999999999988888889999999999887766554567789999999999888777666 6899
Q ss_pred EEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEe--CCeeEEEEecCC
Q 008393 355 VWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL 424 (567)
Q Consensus 355 iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~ 424 (567)
+||.++. .....+. .+...+.+++++|++. ++++... .+.|..||..+++...... .....++|++++
T Consensus 116 ~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 116 AATENGD-NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EECTTSC-SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEeCCCC-EEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9998863 3222222 3456799999999986 4444442 3567777776655443322 346788999998
Q ss_pred CEEEEEE-CCCeEEEEECCC-CeEEE--------EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 425 GRYLAAA-AENVVSILDAET-QACRL--------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 425 ~~l~~~~-~dg~I~i~d~~~-~~~~~--------~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
..++++. .++.|.+||..+ +..+. .+.++ ..+..++++++|+++++...+ .|.+||.. + ..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~ 268 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ 268 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence 8776665 478999999964 22111 12222 467889999999988887776 89999984 3 34455
Q ss_pred eecCCC------ceEEEEEeCCCCeEEEEEcCC------eEEEEECC
Q 008393 494 LSCNGN------KFHSCVFHPTYPSLLVIGCYQ------SLELWNMS 528 (567)
Q Consensus 494 ~~~~~~------~i~~~~~sp~~~~l~~~~~dg------~I~iwd~~ 528 (567)
+..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 544332 578899999988888777663 45555554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=142.34 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=170.1
Q ss_pred eeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
..+..+..+.....+++|+|+++ +++++..++.|.+||..+ + ...+..+...+.++++++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33444555666788999999998 778888899999999987 3 566667788899999999986 555666678999
Q ss_pred EEECCCCeeeEEEeC-------CeeEEEEecCCCEEEEE----E-------------CCCeEEEEECCCCeEEEEecCCC
Q 008393 399 YWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAA----A-------------AENVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 399 iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~----~-------------~dg~I~i~d~~~~~~~~~~~~h~ 454 (567)
+||..+++....... ....+++++++..+++. . ..+.|..+|.. ++.. .+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCC
Confidence 999988876544321 23568899988766652 2 13577777776 4433 344566
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCC-CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~-~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
.....++|+|+|++|++.+.+ .|++|++. ++........+......+..++++++|++++ +. ++.|.+||......
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCEE
Confidence 678899999999988666666 99999996 3321011222233444567789999998544 44 88999999974444
Q ss_pred EEeccccCCeeEEEE-ecCCCEEEEEECCCcEEE
Q 008393 533 MTLTAHEGLIAALAV-STETGYVASASHDKFVKL 565 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~-spdg~~l~s~s~Dg~I~i 565 (567)
..+..+.. +++++| .++++.|++++.++.+++
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 45666666 999999 589999998888865554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-13 Score=139.43 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=183.2
Q ss_pred EcCCCCeEEEEeC--CC---cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcC
Q 008393 295 FSSDGKLLATGGH--DK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDAD 359 (567)
Q Consensus 295 ~s~dg~~lasg~~--dg---~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~ 359 (567)
..++++++++... .. .|.+||..+++.+.++...... .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777766643 22 8899999999998888755444 999999999998886 36789999998
Q ss_pred CCCceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEE-EeCCeeEEEEecCCC-EEEE
Q 008393 360 NPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLG-RYLA 429 (567)
Q Consensus 360 ~~~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~ 429 (567)
+ ...+..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..+. ++.+.+.+. .+++
T Consensus 106 t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 106 T-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYL 182 (373)
T ss_pred C-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEE
Confidence 7 4444444321 1234589999999988866544 58899999 99998877 65443 345556554 4556
Q ss_pred EECCCeEEEEECCCCeEEEEec-----CCCCCe-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec------
Q 008393 430 AAAENVVSILDAETQACRLSLQ-----GHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------ 496 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~-----~h~~~V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~------ 496 (567)
.+.||.+.++|. +++...... ....++ ....+.+++..++..+.+ .|.+.|+..... ..+..+..
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRK 260 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCccc
Confidence 667999999999 876663322 111221 234566665544444445 899999865421 22222221
Q ss_pred ----CCCceEEEEEeCCCCeEEEEEc----------CCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CC
Q 008393 497 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD 560 (567)
Q Consensus 497 ----~~~~i~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~D 560 (567)
.......++++++++.+++... .+.|.++|+.+++.+..........+++|+|||+ +++++. .+
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC
Confidence 1122445789999999888764 3589999999998874334445689999999999 777777 48
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|.+||
T Consensus 341 ~~V~ViD 347 (373)
T 2mad_H 341 EVLHIYD 347 (373)
T ss_pred CeEEEEE
Confidence 9999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-14 Score=141.32 Aligned_cols=279 Identities=9% Similarity=-0.044 Sum_probs=187.9
Q ss_pred CCCCCccceeccCCccceeeee---eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANS---VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~---l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
..+..+..+|..++.-...+.. -+........+++. +++++++...++.|.+||..+++.+.++. .......+++
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE
Confidence 3455666777665521111100 01122345677774 44555666668999999999999988885 3466899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCC-----CcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeEEE
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----ASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~~~~ 411 (567)
+++++.+++...++.|.+||..+ ......+.... .....|++ ++..++++.. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 98884444444899999999987 55554444222 14556777 4566776654 4899999999999988777
Q ss_pred eC--CeeEEEEecCCCEEEEEECC----------CeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCCeEE
Q 008393 412 KG--GTAQMRFQPHLGRYLAAAAE----------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSEDSVR 478 (567)
Q Consensus 412 ~~--~~~~~~~~~~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d~I~ 478 (567)
.. ....+.+++++..++++..+ +.|.++|..+++....+... ......++|+|++++|+++.. .|.
T Consensus 169 ~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~ 247 (328)
T 3dsm_A 169 TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIW 247 (328)
T ss_dssp ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEE
T ss_pred EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEE
Confidence 64 34678889987655444444 78999999999887776532 246889999999998888766 899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-----cCCeEEEEECCCCcEEEeccccCCeeEEEE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTMTLTAHEGLIAALAV 547 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-----~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~ 547 (567)
+||..+++... ...+.........++++|++..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 248 ~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 248 RMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 99998764311 111122245688899999666666665 56799999998 665532222334455555
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=147.13 Aligned_cols=264 Identities=12% Similarity=0.055 Sum_probs=191.2
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC--CCCceeEEeccCCC
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPGYSLRTFMGHSA 373 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~h~~ 373 (567)
++.+.++++...++.|.+||..+++.+.++... ..+..+.|+||+++|++++.|+.|.+||+. + ...+..+.. ..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~-G~ 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKI-GS 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEEC-CS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEec-CC
Confidence 344556677778999999999999999888743 357799999999999999999999999995 4 455566554 34
Q ss_pred cEEEEEEc----CCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------------CeeEEEEecCCCEEEEEEC-CC
Q 008393 374 SVMSLDFH----PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA-EN 434 (567)
Q Consensus 374 ~V~~l~~~----p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~-dg 434 (567)
....++|+ |+|++++++...++.|.++|..+.+.+..+.. .+..+..++++..+++... .|
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 46899999 69999998888889999999999998877652 2345667777776666555 68
Q ss_pred eEEEEECCCCeEE--EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeec-----CCCceEEEE
Q 008393 435 VVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-----NGNKFHSCV 505 (567)
Q Consensus 435 ~I~i~d~~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~-----~~~~i~~~~ 505 (567)
.|.++|....+.. ..+ ........+.|+|+|++|+++... .|.++|+.++ +.+..+.. |...-.. .
T Consensus 321 ~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~ 395 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-F 395 (567)
T ss_dssp EEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-E
T ss_pred eEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-e
Confidence 9999998875322 222 234567789999999998887754 8999999877 44444433 2111112 2
Q ss_pred EeCCCCeEEEEE--cCCeEEEEECCC-------CcEE-EeccccCCeeEEEEecCCCEEEEEEC-------CCcEEEcC
Q 008393 506 FHPTYPSLLVIG--CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iWd 567 (567)
++|++..+++.+ .++.|.++|..+ .+.+ .+......-..+.++|++++|.+... ...|.++|
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 688866666554 457999999987 3444 34433333345778999999887662 34777764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-14 Score=139.96 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=173.4
Q ss_pred eeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 281 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
..+..+.....+++|+++|+ +++++..++.|.+|+..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445566778999999998 7788888999999999887 56666777889999999999988777777899999997
Q ss_pred CCCceeEEeccC----CCcEEEEEEcCCCCeEEEEE----e-------------CCCcEEEEECCCCeeeEEEe--CCee
Q 008393 360 NPGYSLRTFMGH----SASVMSLDFHPNKDDLICSC----D-------------GDGEIRYWSINNGSCTRVFK--GGTA 416 (567)
Q Consensus 360 ~~~~~~~~~~~h----~~~V~~l~~~p~~~~li~s~----~-------------~dg~I~iwd~~~~~~~~~~~--~~~~ 416 (567)
+ +......... ...+..++++++|. ++++. . ..+.|..++.. ++...... ....
T Consensus 99 ~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 G-GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp T-CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred C-CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 6 3332222211 23467899999986 55452 2 13466666665 44333332 2457
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECC-CCeE---EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAE-TQAC---RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
.++|+|++..+++...++.|.+||+. +++. ...+..+...+.+++++++|+++++. .+.|.+||.. + +.+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 79999999988555567899999987 4544 33333355667889999999977766 4499999985 3 5666
Q ss_pred EeecCCCceEEEEE-eCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 493 ELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 493 ~~~~~~~~i~~~~~-sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.+..+.. +.+++| .++++.|++++.+ .|.-++..+.+..
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6766666 889999 5888888888875 5777777666543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=156.15 Aligned_cols=237 Identities=8% Similarity=0.050 Sum_probs=161.0
Q ss_pred EEEeCCCCeeeeeecccCcc-----EEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEE-EEEEcC
Q 008393 312 VLWHTDTLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVM-SLDFHP 382 (567)
Q Consensus 312 ~vwd~~~~~~~~~l~~h~~~-----V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~~p 382 (567)
..+|..+++.+..+..+... +.+++|+|+|++|+.+... ..|.+||+.+ +.. ..+..+...+. .+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~-~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQA-VQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TEE-EECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCC-CcE-EEeecCCCCccccceECC
Confidence 34567788777777655443 6788999999998877653 3688889876 443 33333333333 378999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee---E-------------------EEEecCCCEEEEE-----ECCCe
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-------------------MRFQPHLGRYLAA-----AAENV 435 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~l~~~-----~~dg~ 435 (567)
+++.++ .++.++.|++||+.+++....+..+.. . +.++|++..+++. ..+..
T Consensus 91 dg~~l~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFF-YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEE-EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEE-EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 988766 556677999999999887665542211 1 1345555554443 34568
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-------eEEEEeCCCCCCCceEEEeecC--CCceEEEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-------SVRVWTVGSGSEGECVHELSCN--GNKFHSCV 505 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-------~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~ 505 (567)
|++||+.+++..... .+...+..+.|+| ++..|+..+.+ .|.+||+..+. ...+..+ ...+..++
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceE
Confidence 999999998766544 4567789999999 88877776653 37788876542 1222222 23577889
Q ss_pred EeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCCeeEEEEec-CCCEEEEEE
Q 008393 506 FHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASAS 558 (567)
Q Consensus 506 ~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s 558 (567)
|+|+|++|++++.+ +.|++||+.+++...+..... .. +.|+| ||++|++++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence 99999988877654 349999999887664433222 33 89999 999888765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=145.08 Aligned_cols=271 Identities=8% Similarity=0.058 Sum_probs=190.8
Q ss_pred EEEcCCCCeEEEEeC-----CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEE
Q 008393 293 CHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWD 357 (567)
Q Consensus 293 l~~s~dg~~lasg~~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd 357 (567)
....|+++.+++... ++.|.++|..+++.+.++..-..+ . ++++||+++|+++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455788988887765 679999999999999999865555 4 99999999988876 367899999
Q ss_pred cCCCCceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEE
Q 008393 358 ADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 358 ~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (567)
..+ ...+..+.-. ......+.|+|+|++++++... ++.|.++|+.+++.+..+..+.....+......+++
T Consensus 116 ~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 194 (386)
T ss_dssp TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence 998 5555555321 1245579999999988866543 789999999999999988754433334444467778
Q ss_pred EECCCeEEEEECCC-CeEEEEecCC----CCCee-EEEEc-CCCCEEEEEeCCeEEEEeCCCCCCCceEEEee---c---
Q 008393 430 AAAENVVSILDAET-QACRLSLQGH----TKPID-SVCWD-PSGELLASVSEDSVRVWTVGSGSEGECVHELS---C--- 496 (567)
Q Consensus 430 ~~~dg~I~i~d~~~-~~~~~~~~~h----~~~V~-~l~~s-p~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~---~--- 496 (567)
.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++....+.|+++|+.+... ..+..+. .
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAER 273 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccccc
Confidence 88899999999976 5543322211 12222 24664 678666544434999999975421 2222221 0
Q ss_pred ----CCCceEEEEEeCCCCeEEEEEc----------CCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CC
Q 008393 497 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD 560 (567)
Q Consensus 497 ----~~~~i~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~D 560 (567)
....+..++++++++.+++... .+.|.++|+.+++.+....-...+..|++++|++ +|+++. .+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence 0122334678999999998753 2479999999999885444445789999999997 666654 48
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|.++|
T Consensus 354 ~~VsViD 360 (386)
T 3sjl_D 354 KTLYIHD 360 (386)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 8898875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=165.31 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=167.1
Q ss_pred cCCCCeEEEEEcCCCCeEEE-----EeCCCcEEEEeCCCCeeeeeecccCccE--EEEEECCCCCeEEEEeCCCc-----
Q 008393 285 ASTSKVICCHFSSDGKLLAT-----GGHDKKAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSFDKT----- 352 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~las-----g~~dg~I~vwd~~~~~~~~~l~~h~~~V--~~i~fsp~~~~l~s~s~dg~----- 352 (567)
+|+..+.+++|||||++||. |+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 56667889999999999984 4445789999999988651 1122222 67899999999999998876
Q ss_pred --------EEEEEcCCCCc---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeEEEeC--Cee
Q 008393 353 --------VRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKG--GTA 416 (567)
Q Consensus 353 --------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g--~I~iwd~~~~~~~~~~~~--~~~ 416 (567)
|++|++.++.. .+.....|...+..+.|+|+|+.++++...+ + .|++|+..++........ ...
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987432 2223334556889999999998887665543 2 677777665554433332 233
Q ss_pred EEEEecCCCEEEEEEC----CCeEEEEECCCCeE---EEEecCC-CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC
Q 008393 417 QMRFQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 487 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~---~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~ 487 (567)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...+ ..+||.+...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-- 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-- 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence 3444 5666 666554 57999999987652 3333333 4457888998 67788888877 6666655421
Q ss_pred CceEEEeecC-CCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcEEEec
Q 008393 488 GECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTLT 536 (567)
Q Consensus 488 ~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~~ 536 (567)
...+..+..+ ...+..+.+++++..|+..... +.|++||+.+++...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1344555544 4567777889999877755433 58999999988755443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-12 Score=128.26 Aligned_cols=271 Identities=10% Similarity=0.010 Sum_probs=189.1
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee-eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
.....+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. ...
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678899999999988877778999999988 55443 233344679999999999877777668889999987 333
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-Ee---CCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
...........+.++++.+++. ++++...++.|..||.. ++.... +. .....+++.+++..+++...++.|..|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 2222333446789999998875 55466667899999988 554432 22 245778888987755444457899999
Q ss_pred ECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 440 DAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 440 d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
|. +++... .+..+...+..++++++|+++++...+ .|.+||. ++. .....+......+.+++++++|..+++..
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 98 554433 233345678999999999877766655 8999998 331 11122233456688999999998544444
Q ss_pred cCCeEEEEECCCCcEEE--eccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 518 CYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 518 ~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.++.|..||. ++.... +......+.+++++++|+++++.. . .|..+
T Consensus 249 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 249 GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 5689999998 455443 333456789999999998766554 4 45443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-14 Score=137.40 Aligned_cols=236 Identities=10% Similarity=-0.007 Sum_probs=166.2
Q ss_pred CeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 289 KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 289 ~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||.... . ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~-~-~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN-N-QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS-C-CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc-e-Eee
Confidence 567899999999777 546789999999876554333333445688999999998665555 889999998763 2 233
Q ss_pred ec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCC
Q 008393 368 FM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 368 ~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
+. .....+..+++.+++. ++++...++.|.+|+..+........ .....+++.+++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 32 2336789999999876 66576778899999876554432221 2456789999887555555578999999988
Q ss_pred CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 444 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 444 ~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.........+...+.+|+++++|.++++...+ .|.+|+..... ...........+..++++++|+.+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 76654434444678899999999777776666 89999986532 111112223568899999999877777788999
Q ss_pred EEEECCCCc
Q 008393 523 ELWNMSENK 531 (567)
Q Consensus 523 ~iwd~~~~~ 531 (567)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=134.56 Aligned_cols=239 Identities=15% Similarity=0.085 Sum_probs=177.8
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCc
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SAS 374 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~ 374 (567)
..+++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. + ++.+..+..+ ...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcCCCCcc
Confidence 346789999999999999999999999998776 5789999999999888 45778999999 5 5666666654 357
Q ss_pred EEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEECCCeEEEEECCCC
Q 008393 375 VMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 444 (567)
Q Consensus 375 V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 444 (567)
+.++.+.++|+.++ +.+. ++.|..+|. +++.+..+.. ....+.+.++++.+++...++.|.+||.+ +
T Consensus 79 ~~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 79 MQTARILPDGNALV-AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEECTTSCEEE-EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccccEECCCCCEEE-EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 88999999988666 4444 777888886 6777766542 12345678898988888889999999998 9
Q ss_pred eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC------CceEEEEEeCCCCeEEEEE
Q 008393 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG------NKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~------~~i~~~~~sp~~~~l~~~~ 517 (567)
+.+.++... ..+.++.+.++|++++++..+ .|..+|..++ +.+.++.... ..+..+...++|..+++..
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999988864 456678889999999988888 8999999877 5666665332 2367888899998776663
Q ss_pred cC--------CeEEEEEC-CCCcEE-Eeccc--cCCeeEEE
Q 008393 518 CY--------QSLELWNM-SENKTM-TLTAH--EGLIAALA 546 (567)
Q Consensus 518 ~d--------g~I~iwd~-~~~~~~-~~~~h--~~~V~~l~ 546 (567)
.. +..+++++ .+++.+ .+..+ -+.|++++
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 11 23355555 355554 44322 24455554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-14 Score=155.67 Aligned_cols=266 Identities=8% Similarity=0.003 Sum_probs=180.4
Q ss_pred CCCCeEEEEeCC-----CcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEeCCC-----cEEEEEcCC
Q 008393 297 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADN 360 (567)
Q Consensus 297 ~dg~~lasg~~d-----g~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s~dg-----~I~iwd~~~ 360 (567)
|||++++....+ +.|++.+...++....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 888887765432 244555554444332222 3445688999999999998776543 899999998
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc----------------EEEEECCCCee--eEEEeC-----CeeE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----------------IRYWSINNGSC--TRVFKG-----GTAQ 417 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~----------------I~iwd~~~~~~--~~~~~~-----~~~~ 417 (567)
+..+.....+ ..+..++|+|||+.++++. .++. |++|++.++.. ...+.. ....
T Consensus 161 -g~~~~~~~~~-~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 -AKELPDVLER-VKFSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp -TEEEEEEEEE-ECSCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred -CCCCcccccC-cccceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 4444322212 2266799999998877554 4444 99999988763 233332 2457
Q ss_pred EEEecCCCEEEEEEC-----CCeEEEEECCC------Ce-EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEE
Q 008393 418 MRFQPHLGRYLAAAA-----ENVVSILDAET------QA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW 480 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~-----dg~I~i~d~~~------~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iw 480 (567)
+.|+|++..++..+. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.. .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 889999999888775 56899999986 42 34556666666654 488999888777643 59999
Q ss_pred eCCCCCCCceEEEeecCCC--ceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcE-EEeccccCCeeEEEEecCCCEEE
Q 008393 481 TVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
|+.++... ....+..+.. .+..+.|++++.++++...++ .|++||+.+++. ..+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99765321 2233444433 677889987777777777787 577888866764 46666777889999999987665
Q ss_pred EE-E---CCCcEEEcC
Q 008393 556 SA-S---HDKFVKLWK 567 (567)
Q Consensus 556 s~-s---~Dg~I~iWd 567 (567)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 236777764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-12 Score=131.19 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=177.5
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeeccc-------
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------- 328 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h------- 328 (567)
+.++|..++ +.+..+.....+ .++|+|||++|+++. .++.|.+||..+++.+.++...
T Consensus 49 v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 49 QWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 344454443 334455543444 899999999999886 3678999999998888776532
Q ss_pred CccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 329 SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
...-..+.|+|||++|+++.. ++.|.++| .+ ++.+.. +.. .. ++.+.+++...+++.+.||.+.+||. ++
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 123458999999999999874 47899999 77 555555 432 22 35566777777778888999999999 87
Q ss_pred eeeEEEe-----CCe----eEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecC----------CCCCeeEEEEcC
Q 008393 406 SCTRVFK-----GGT----AQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG----------HTKPIDSVCWDP 464 (567)
Q Consensus 406 ~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~----------h~~~V~~l~~sp 464 (567)
+...... ... ....+.++++.++..+.++.+.++|+.... .+..+.. .......+++++
T Consensus 197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence 7663322 111 123466677777777788899999997652 2222221 112244578999
Q ss_pred CCCEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEE-cCCeEEEEECCCCc
Q 008393 465 SGELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENK 531 (567)
Q Consensus 465 ~g~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~~ 531 (567)
+++.|+.... + .|.++|+.++ +.+..+.. ......++|+|||+ +++++. .++.|.+||+.+++
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9988777643 2 7999999776 56666643 34678999999999 677776 48899999999998
Q ss_pred EEEe
Q 008393 532 TMTL 535 (567)
Q Consensus 532 ~~~~ 535 (567)
.+..
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 8744
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-14 Score=134.95 Aligned_cols=231 Identities=10% Similarity=-0.024 Sum_probs=161.6
Q ss_pred cEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 331 LITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
...++++++++++++ +...++.|.+||..+. ........+...+.+|++.+++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998666 4467889999998652 22111123345678999999876 554555 8899999987765432
Q ss_pred EE-e--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 410 VF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 410 ~~-~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
.. . .....+++.+++..+++...++.|.+|+..+.............+.+|+++++|+++++...+ .|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1 346788899987755555567899999877655443333333467889999999977776655 9999998754
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-cccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
. ...........+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223366889999999965555556789999999776554333 3346789999999999888888899999
Q ss_pred EcC
Q 008393 565 LWK 567 (567)
Q Consensus 565 iWd 567 (567)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 885
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-13 Score=136.37 Aligned_cols=271 Identities=12% Similarity=0.127 Sum_probs=184.8
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeecccC------
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHS------ 329 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h~------ 329 (567)
+.+.|..++ +.+..+..-..+ .++++|||++|+++. .++.|.+||..+++.+.++....
T Consensus 61 V~ViD~~t~---~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 61 QFVIDGEAG---RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp EEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred EEEEECCCC---eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 334444443 455555544455 399999999988775 36789999999999988875321
Q ss_pred -ccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-C
Q 008393 330 -SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-G 405 (567)
Q Consensus 330 -~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~ 405 (567)
..-..++|+|||++|+++.. ++.|.++|+.+ .+.+.++.-. + |..+.|.+...+++.+.||.+.+.++.+ +
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 24557899999999998874 68899999998 6666666422 1 1223355555555777899999999986 5
Q ss_pred eeeEEEeCC-------e-eEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEec---------C-CCCCeeEEEEcCC
Q 008393 406 SCTRVFKGG-------T-AQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQ---------G-HTKPIDSVCWDPS 465 (567)
Q Consensus 406 ~~~~~~~~~-------~-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~---------~-h~~~V~~l~~sp~ 465 (567)
+........ . ....|....+.++..+.++.|+++|..+.. .+..+. + ....+..++++++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 543221111 1 113455445667677889999999997653 332221 0 1223445788999
Q ss_pred CCEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEEc-CCeEEEEECCCCcE
Q 008393 466 GELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGC-YQSLELWNMSENKT 532 (567)
Q Consensus 466 g~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~-dg~I~iwd~~~~~~ 532 (567)
++.++.... . .|.++|+.++ +.+..+... ..++.|+|++|++ +|+++.. ++.|.++|..+++.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 988887642 3 7999999887 555555432 3678899999997 6777654 78999999999998
Q ss_pred EEeccccCCeeEEEEecC
Q 008393 533 MTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spd 550 (567)
+......+..+.|.+++|
T Consensus 367 ~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 367 LRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEECCCCSSCCEEEECC
T ss_pred EEEecCCCCCceeEECCc
Confidence 855555555667777776
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-14 Score=154.97 Aligned_cols=264 Identities=10% Similarity=-0.032 Sum_probs=170.3
Q ss_pred cCCCCeEEEEeCCC-----cEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEE-----eCCCcEEEEEcC
Q 008393 296 SSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATS-----SFDKTVRVWDAD 359 (567)
Q Consensus 296 s~dg~~lasg~~dg-----~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~-----s~dg~I~iwd~~ 359 (567)
+++|++++....++ .|++.+...++....+. +|...+..++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887766543 34555554554333332 455679999999999999844 345689999999
Q ss_pred CCCceeEEeccCCCcE--EEEEEcCCCCeEEEEEeCCCc-------------EEEEECCCCee--eEEEeC-----CeeE
Q 008393 360 NPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGE-------------IRYWSINNGSC--TRVFKG-----GTAQ 417 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V--~~l~~~p~~~~li~s~~~dg~-------------I~iwd~~~~~~--~~~~~~-----~~~~ 417 (567)
++ ..+. ..+...+ ..++|+|||+.++++ +.|.. |++|++.++.. ...+.. ....
T Consensus 156 tg-~~~~--~~~~~~~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 156 SG-EWSK--VDVIEGGKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TC-CBCS--SCCBSCCTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CC-CCcC--CcccCcccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 84 3320 1111222 679999999877754 45554 99999998762 233332 3567
Q ss_pred EEEecCCCEEEEEECCC----eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC----C-eEEEEeCCCCCCC
Q 008393 418 MRFQPHLGRYLAAAAEN----VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGSEG 488 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg----~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~----d-~I~iwd~~~~~~~ 488 (567)
+.|+|++..+++.+.++ .|+++|..+++.. .+..+...+....| ++|. |+..+. + .|.+||+.++...
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc
Confidence 88999999998887765 7888877665443 34445556666666 5666 444443 4 7999999776321
Q ss_pred ceEEEeecC-CCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEEeccc-cCCeeEEEEecCCCEEEEEE----CC
Q 008393 489 ECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLTAH-EGLIAALAVSTETGYVASAS----HD 560 (567)
Q Consensus 489 ~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s----~D 560 (567)
.....+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ .+.|..++++|++..|+... ..
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTP 387 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEE
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 122223323 4457778888 66677777888866666 4433333345444 66788889999998766332 24
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
+.|++||
T Consensus 388 ~~v~~~d 394 (695)
T 2bkl_A 388 RQIYKTS 394 (695)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 6787775
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-13 Score=128.77 Aligned_cols=193 Identities=10% Similarity=0.098 Sum_probs=143.9
Q ss_pred cCCCCeEEEEE-cCCCCeEEEEeC-CCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHF-SSDGKLLATGGH-DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~-s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+|...+.++++ .++++++++... ++.|.+|| .+++.+..+. .+...+.+++++++++++++...++.|.+||.+.
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG- 151 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-
Confidence 34567889999 577777766643 89999999 5677766664 3456789999999998888877889999999753
Q ss_pred CceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCCEEEEEECCC
Q 008393 362 GYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 362 ~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg 434 (567)
..+..+. .+...+..|++++++. ++++...++.|++||.. ++.+..+.. ....+++++++..+++...++
T Consensus 152 -~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 152 -NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp -CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred -CEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 4444443 4556789999999875 66677778999999974 455555532 457789999987666666665
Q ss_pred -eEEEEECCCCeEEEEecCCC--CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 435 -VVSILDAETQACRLSLQGHT--KPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 435 -~I~i~d~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
.|.+||.. ++.+..+..+. ..+.+++++++|+++++ +.+ .|++|++..
T Consensus 229 ~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 229 FNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 99999964 55555655443 34779999999987777 556 999999854
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-13 Score=139.13 Aligned_cols=266 Identities=7% Similarity=0.043 Sum_probs=186.3
Q ss_pred CCCCeEEEEeCC-----CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcCCC
Q 008393 297 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNP 361 (567)
Q Consensus 297 ~dg~~lasg~~d-----g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~~~ 361 (567)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 466666555442 69999999999999999865555 899999999988886 367899999998
Q ss_pred CceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeCCeeEEEEecCC-CEEEEEEC
Q 008393 362 GYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAAA 432 (567)
Q Consensus 362 ~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 432 (567)
.+.+..+.-. ......+.|+|+|++++++... ++.|.+.|+.+++.+..+.-+.. ....|.+ ..+++.+.
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence 5555554311 1234578999999988866543 68999999999999988875433 3334433 55677778
Q ss_pred CCeEEEEECCCCeEEEEe----cCCCCCe-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC---------
Q 008393 433 ENVVSILDAETQACRLSL----QGHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--------- 497 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~----~~h~~~V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--------- 497 (567)
||.+.+.+..+++..... .....++ ..+.|.+++..++..... .|.+.|+..... ..+..+...
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDW 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccccc
Confidence 898888888666554321 1112222 235678988877777767 899999865321 111111100
Q ss_pred -CCceEEEEEeCCCCeEEEEEc----------CCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEE
Q 008393 498 -GNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVK 564 (567)
Q Consensus 498 -~~~i~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~ 564 (567)
......++++++++++++... .+.|.++|+.+.+.+....-......++|+||++ +++++. .++.|.
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 011123589999998888753 3479999999999884333334688999999999 888888 489999
Q ss_pred EcC
Q 008393 565 LWK 567 (567)
Q Consensus 565 iWd 567 (567)
++|
T Consensus 397 VID 399 (426)
T 3c75_H 397 IYD 399 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-12 Score=126.18 Aligned_cols=236 Identities=12% Similarity=0.114 Sum_probs=165.1
Q ss_pred CCCCeEEEEEcCCCCeEEE-------EeCCCcEEEEeCCCCeeeeeec----ccCccEEEEEECCC-CCeEEEEeCCCcE
Q 008393 286 STSKVICCHFSSDGKLLAT-------GGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPS-MPRLATSSFDKTV 353 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~las-------g~~dg~I~vwd~~~~~~~~~l~----~h~~~V~~i~fsp~-~~~l~s~s~dg~I 353 (567)
.-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ +++++ ++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCE
Confidence 3445679999999988888 6778999999988877643322 25567999999999 65444 4444469
Q ss_pred EEEEcCCCCceeEEe-cc-----CCCcEEEEEEcCCCCeEEEEEeCC---------------CcEEEEECCCCeeeEEEe
Q 008393 354 RVWDADNPGYSLRTF-MG-----HSASVMSLDFHPNKDDLICSCDGD---------------GEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~-~~-----h~~~V~~l~~~p~~~~li~s~~~d---------------g~I~iwd~~~~~~~~~~~ 412 (567)
.+||.+ .. . ..+ .. ....+.++++.+++. ++++...+ +.|..||.. ++......
T Consensus 95 ~~~d~~-g~-~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 95 LVVQTD-GT-F-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEETT-SC-E-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEeCC-CC-E-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 999987 33 2 222 11 124588999999986 44455444 568888776 55443322
Q ss_pred --CCeeEEEEe----cCCCEEEEEE-CCCeEEEEECC-CCe-----EEEEecCCC-CCeeEEEEcCCCCEEEEEeCC-eE
Q 008393 413 --GGTAQMRFQ----PHLGRYLAAA-AENVVSILDAE-TQA-----CRLSLQGHT-KPIDSVCWDPSGELLASVSED-SV 477 (567)
Q Consensus 413 --~~~~~~~~~----~~~~~l~~~~-~dg~I~i~d~~-~~~-----~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~d-~I 477 (567)
.....++++ +++..++++. .++.|.+||.. +++ ....+..+. ..+..++++++|+++++...+ .|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 345678899 8887776665 47899999976 443 233344443 567899999999988887766 99
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 530 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 530 (567)
.+||..++. .+..+..+...+.+++|+++++.|++++. ++.|..|++...
T Consensus 250 ~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 250 EVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999987553 33444555577899999999996766654 579999998753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=151.24 Aligned_cols=244 Identities=12% Similarity=0.064 Sum_probs=164.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCC-----CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc--------
Q 008393 286 STSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------- 352 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~d-----g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~-------- 352 (567)
|+..+..++|||||++||.+..+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44568899999999999887654 4699999999987653 112222357899999 99988887654
Q ss_pred ------EEEEEcCCCCc-eeEEec--cCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCCC--eeeEEEeCC--e
Q 008393 353 ------VRVWDADNPGY-SLRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNG--SCTRVFKGG--T 415 (567)
Q Consensus 353 ------I~iwd~~~~~~-~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~~--~~~~~~~~~--~ 415 (567)
|++|++.+... ....+. .+...+..+.|+|+|+.++++... ...|++||+.++ ++...+... .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999976432 122232 333468899999999988766643 348999999887 413333321 1
Q ss_pred eEEEEecCCCEEEEEECC----CeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC-CCCC
Q 008393 416 AQMRFQPHLGRYLAAAAE----NVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG-SGSE 487 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~-~~~~ 487 (567)
....+.++++.++..+.+ +.|.+||+.++ .....+..+...+..++|+ ++.++++...+ ..+||.+. .+
T Consensus 319 ~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-- 395 (741)
T 1yr2_A 319 QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-- 395 (741)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS--
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC--
Confidence 122245889998888763 46999999884 3444444455556678887 56677777777 65555443 22
Q ss_pred CceEEEeec-CCCceEEEEEeCCCCeEEEEEc----CCeEEEEECCCCcEEEe
Q 008393 488 GECVHELSC-NGNKFHSCVFHPTYPSLLVIGC----YQSLELWNMSENKTMTL 535 (567)
Q Consensus 488 ~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~----dg~I~iwd~~~~~~~~~ 535 (567)
.....+.. ....+..+.++|+++.|+.... .++|++||+.+++...+
T Consensus 396 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 -KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp -CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred -CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34455554 3566888899999886665433 25899999988775433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-11 Score=120.07 Aligned_cols=233 Identities=8% Similarity=0.009 Sum_probs=164.2
Q ss_pred cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 326 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
..+...+.++++.++++++++...++.|.+||.. ..........+...+.++++.+++. ++++...++.|..||.. +
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-C
Confidence 3455679999999999877776668899999987 3332222233557899999999876 55466667889999987 3
Q ss_pred eeeEEEe-----CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEE
Q 008393 406 SCTRVFK-----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVR 478 (567)
Q Consensus 406 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~ 478 (567)
+. ..+. .....+++.+++..+++...++.|.+||. +++... .+..+...+..++++++|+++++...+ .|.
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 32 2222 24567888888766655556789999999 554432 333345678999999999888777665 899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCCCEEEE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s 556 (567)
+||. ++.. .. ..+......+..+++++++..+++...++.|.+||. +++...+ ..+...+.+++++++|+++++
T Consensus 166 ~~~~-~g~~-~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDI-TE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCE-EE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcE-EE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 9998 4421 11 122334456889999999985555555789999999 6665433 345567999999999987776
Q ss_pred EECCCcEEEcC
Q 008393 557 ASHDKFVKLWK 567 (567)
Q Consensus 557 ~s~Dg~I~iWd 567 (567)
...++.|.+||
T Consensus 242 ~~~~~~i~~~d 252 (299)
T 2z2n_A 242 EWGANKIGRLT 252 (299)
T ss_dssp ETTTTEEEEEE
T ss_pred ccCCceEEEEC
Confidence 65677787764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=126.00 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=161.1
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----C
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 414 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~ 414 (567)
.+++|++++.|+.|.+||.++ ++.+..+..+. ..+.++.+.|+|+ +++ +.++.|..||. +++.+..++. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 356899999999999999987 67777777665 4788999999986 444 34788999999 8998888875 3
Q ss_pred eeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
...+.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|++|++...+ .|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 456778999999998887 788888886 6776666542 11245567889999999999888 99999986 5
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc------CCeeEEEEecCCCEEEEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVSTETGYVASAS 558 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~------~~V~~l~~spdg~~l~s~s 558 (567)
+.+..+... .....+.+.++++.++++..++.|..+|..+++.+ .+..+. ..+..++..++|.++++..
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 566666654 34556788899998888888889999999988877 443221 2378888899999888773
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-11 Score=127.90 Aligned_cols=230 Identities=11% Similarity=0.098 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCcee
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSL 365 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~ 365 (567)
....+++|+++|+++++...++.|++||.+++.....+..... .. ++|++++..|+++..++ .|.+|+..... ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~-~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW-AP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT-CE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc-ee
Confidence 4678999999999888877789999999998877666554333 33 99999999999998866 78888887633 23
Q ss_pred EEe----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----EeC--Ce--e-EEEEecCCCEEEEEEC
Q 008393 366 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKG--GT--A-QMRFQPHLGRYLAAAA 432 (567)
Q Consensus 366 ~~~----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~~~--~~--~-~~~~~~~~~~l~~~~~ 432 (567)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ..+ .. . .++|+|+++.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224567889999996566665 66788999999988764333 111 11 2 8999997777776665
Q ss_pred -CCeEEEEECCCCeEEEEecCCC---------------CCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEe
Q 008393 433 -ENVVSILDAETQACRLSLQGHT---------------KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 433 -dg~I~i~d~~~~~~~~~~~~h~---------------~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
++.|+.|+.... +..+.++. .....|+|+++|+++++-. .+ .|+.|++.++ .+..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G----~v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG----YVSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT----EEEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC----EEEEE
Confidence 689999998754 22333322 3478999999999777766 66 9999997655 23333
Q ss_pred ecC---------------CCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 495 SCN---------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 495 ~~~---------------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.++ -.....+++++++.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333 245788999999766666666678887765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=145.66 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=167.6
Q ss_pred cCCCCeEEEEeCCCc---EEEE--eCC---CCeeeeee------cccCccEEEEEECCCCCeEEEEeCC-----CcEEEE
Q 008393 296 SSDGKLLATGGHDKK---AVLW--HTD---TLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFD-----KTVRVW 356 (567)
Q Consensus 296 s~dg~~lasg~~dg~---I~vw--d~~---~~~~~~~l------~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iw 356 (567)
+|||++++....++. -.+| +.. .++....+ .+|...+..+.|+|||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388998877654432 4444 443 33333221 2344468899999999999887654 359999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-------------cEEEEECCCCee--eEEEeC-----Cee
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------------EIRYWSINNGSC--TRVFKG-----GTA 416 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-------------~I~iwd~~~~~~--~~~~~~-----~~~ 416 (567)
|+.+ +..+.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+.. ...
T Consensus 195 dl~t-g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVAD-GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTT-CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCC-CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998 443332 112222357899999 87776553322 399999987752 233332 256
Q ss_pred EEEEecCCCEEEEEECC-----CeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEeCCC
Q 008393 417 QMRFQPHLGRYLAAAAE-----NVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGS 484 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iwd~~~ 484 (567)
.+.|+|++..++..+.+ ..|++||+.++ ++...+..+...+.... +++|+.|+..+.+ .|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 78899999998887754 38999999877 31345555555555553 4889888887753 499999876
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEEecc-ccCCeeEEEEecCCCEEEEE-E--
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLTA-HEGLIAALAVSTETGYVASA-S-- 558 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~-s-- 558 (567)
+. ......+..+...+..+.+. ++..+++...++..+|| ++..+....+.. +.+.|..++++|+++.|+.. +
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12233334444456677777 55566777778765555 554443334443 36678899999998765532 2
Q ss_pred -CCCcEEEcC
Q 008393 559 -HDKFVKLWK 567 (567)
Q Consensus 559 -~Dg~I~iWd 567 (567)
..+.|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 246777774
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-13 Score=132.70 Aligned_cols=265 Identities=9% Similarity=-0.015 Sum_probs=171.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEe--CCCcEEEEeCCCCeeee------eecccCccEEEEEECCCCCeEEEEeC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT------NLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~--~dg~I~vwd~~~~~~~~------~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
+.+..+. ..+..++++++|+++++.. .++.++||.+.+++... ....|...+..|+|+++++++++-..
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g 86 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNG 86 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence 4444443 6788999999999988864 23435555554555431 11235568999999999876555433
Q ss_pred -----CCcEEEEEcCCCCceeEEecc------CCCcEEEEEEcCCCCeEEEEEe---CCCcEEEEECCCCeeeEEEeCC-
Q 008393 350 -----DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGG- 414 (567)
Q Consensus 350 -----dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~li~s~~---~dg~I~iwd~~~~~~~~~~~~~- 414 (567)
++.|.+||+.+ +..+..+.. +...+..+++.+++..++++.. .++.|.+||+.+++..+.+.++
T Consensus 87 ~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 57899999987 554554432 2245689999987667776766 6889999999988877665431
Q ss_pred -ee--EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCC---CC
Q 008393 415 -TA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS---GS 486 (567)
Q Consensus 415 -~~--~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~---~~ 486 (567)
.. ...+.+++..+.....++.+..|. ..+..|+|+|+|+.|+.+... .|..++... +.
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~ 231 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ 231 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred cccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence 10 133344444444445555554332 246789999999988888766 455554321 10
Q ss_pred --CCc---eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc--ccCCeeEEEEecCCCEEEEEEC
Q 008393 487 --EGE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 487 --~~~---~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~ 559 (567)
... .+. ..++......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+.
T Consensus 232 ~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 232 LTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp CCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 000 011 11223345567999999877777778899999995565443332 3456899999999988887764
Q ss_pred CC
Q 008393 560 DK 561 (567)
Q Consensus 560 Dg 561 (567)
.+
T Consensus 311 ~~ 312 (343)
T 2qe8_A 311 LH 312 (343)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-12 Score=124.48 Aligned_cols=233 Identities=7% Similarity=-0.008 Sum_probs=158.2
Q ss_pred CccEEEEEECCCCCeEEE-------EeCCCcEEEEEcCCCCceeEEec-----cCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 329 SSLITDVRFSPSMPRLAT-------SSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s-------~s~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
-....+++|++++.++++ +..++.|.+||..+.. . ..+. ++...+.++++++++..++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-K-TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-E-EEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-E-EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence 345689999999987777 5678899999987633 2 2222 24567899999998334554443 457
Q ss_pred EEEEECCCCeeeEE-Ee-------CCeeEEEEecCCCEEEEEECC---------------CeEEEEECCCCeEEEEecCC
Q 008393 397 IRYWSINNGSCTRV-FK-------GGTAQMRFQPHLGRYLAAAAE---------------NVVSILDAETQACRLSLQGH 453 (567)
Q Consensus 397 I~iwd~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d---------------g~I~i~d~~~~~~~~~~~~h 453 (567)
|.+||.. ++.... .. .....+++.+++..+++...+ +.|..||.. ++..... .+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 9999998 665433 21 135688999987666555444 578888876 5443322 23
Q ss_pred CCCeeEEEEc----CCCCEEEEEe-CC-eEEEEeCC-CCCC--CceEEEeecCC-CceEEEEEeCCCCeEEEEEcCCeEE
Q 008393 454 TKPIDSVCWD----PSGELLASVS-ED-SVRVWTVG-SGSE--GECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQSLE 523 (567)
Q Consensus 454 ~~~V~~l~~s----p~g~~l~s~s-~d-~I~iwd~~-~~~~--~~~i~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~I~ 523 (567)
......++|+ ++++.|+.+. .+ .|.+||+. .+.. ...+..+..+. .....++++++|..+++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 3456889999 9997665554 45 89999986 2211 01222333333 5678899999998777777888999
Q ss_pred EEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE-ECCCcEEEcC
Q 008393 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iWd 567 (567)
+||..+++.. .+..+...+.+++|++++++|+.+ ..++.|..|+
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 9999866544 455566789999999999955544 4556777663
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=127.02 Aligned_cols=228 Identities=13% Similarity=0.063 Sum_probs=160.5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCee
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSC 407 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~ 407 (567)
.....|+|+++++++++...++.|++||.++ +........ ..... ++|+++++.++ ++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4578999999998777777789999999986 444333333 33334 99999988666 555544 799999877655
Q ss_pred eEEE----e---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEE----ecCCCCCe--eEEEEcCC-CCEEEEEe
Q 008393 408 TRVF----K---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPI--DSVCWDPS-GELLASVS 473 (567)
Q Consensus 408 ~~~~----~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~----~~~h~~~V--~~l~~sp~-g~~l~s~s 473 (567)
...+ . .....++++|+++.++++..++.|+.||..++..... ..++...- ..++|+|+ +.++++..
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4443 1 3456789999778888877788999999988764433 22222222 39999996 54444444
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecC---------------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEec
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCN---------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLT 536 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~---------------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~ 536 (567)
.+ .|+.|+.... +..+.+. -.....++++++|.++++-. .++.|+.|++.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 45 8999987532 2223222 13478899999999555555 6789999998888776665
Q ss_pred cc---------------cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 537 AH---------------EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 537 ~h---------------~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++ -.....|++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 54 2468899999998877777777888764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=132.18 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=138.7
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe---------eee-eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------SKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~---------~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.+..+++++...+|++|+.+ .+++|+++..+ ... ....+.. |+.|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 68899999999999999987 55569875433 111 2223556 999999 89999999 8899999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
.+.. .......|...|.++.+.+. . ++++..||.|.+||+.++.... +...+.+++|+|+| ++++..||.+++
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8743 44556667888988888755 2 5578899999999999887754 56789999999998 788999999999
Q ss_pred EECCCCeE--EEEe------c---CCCCCeeEEEEcCCCCEEEEEe
Q 008393 439 LDAETQAC--RLSL------Q---GHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 439 ~d~~~~~~--~~~~------~---~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|+...++. ..++ . +|...|.+|+|.+++.++++-.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99988876 5566 3 3778899999999999888754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-12 Score=130.20 Aligned_cols=255 Identities=12% Similarity=0.133 Sum_probs=178.5
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeeccc-------
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------- 328 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h------- 328 (567)
+.++|..+. +.+..+..-..+ .++++|||++|+++. .++.|.++|..+++.+.++.-.
T Consensus 101 VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 101 QFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred EEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 334454444 455555544455 799999999988876 3678999999999998887532
Q ss_pred CccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 008393 329 SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~ 406 (567)
......+.|+||+++|+++.. ++.|.+.|+.+ .+.+..+.-. + +....|++...+++.+.||.+.+.++.+++
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 223457899999999999875 57899999998 5666665531 1 133455555666677789999988886665
Q ss_pred eeEEE----eCC----eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE--EecC----------CCCCeeEEEEcCCC
Q 008393 407 CTRVF----KGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQG----------HTKPIDSVCWDPSG 466 (567)
Q Consensus 407 ~~~~~----~~~----~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~----------h~~~V~~l~~sp~g 466 (567)
..... ... ...+.+.+++..++.....+.|.+.|........ .+.. .......+++++++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 54321 111 1234678888998888889999999997654321 1110 01122237899998
Q ss_pred CEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEE-cCCeEEEEECCCCcEE
Q 008393 467 ELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTM 533 (567)
Q Consensus 467 ~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~~~~ 533 (567)
+.+++... . .|.++|+.+. +.+..+... .....+.|+||++ ++++.. .++.|.++|+.+++.+
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 87776642 3 7999999887 555555432 2578889999999 888888 4899999999999988
Q ss_pred E
Q 008393 534 T 534 (567)
Q Consensus 534 ~ 534 (567)
.
T Consensus 407 ~ 407 (426)
T 3c75_H 407 R 407 (426)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-12 Score=140.25 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=166.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEe-----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc-------
Q 008393 285 ASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 352 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~------- 352 (567)
+|...|..++|||||++||.+. ....|++||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566788999999999998543 3357999999999865431 111113567899 9999999888743
Q ss_pred ------EEEEEcCCCCc---eeEEecc-CCCcEEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCe-eeEEEeCC--ee
Q 008393 353 ------VRVWDADNPGY---SLRTFMG-HSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGS-CTRVFKGG--TA 416 (567)
Q Consensus 353 ------I~iwd~~~~~~---~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~d---g~I~iwd~~~~~-~~~~~~~~--~~ 416 (567)
|++|++.+... .+..... |...+..+.|+|+++.++++...+ ..|++||+.++. ....+... ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987432 2222223 455678999999999888776543 589999998763 23333322 12
Q ss_pred EEEEecCCCEEEEEECC----CeEEEEECCCCeE--EEEecCCCCCeeEEEEcCCCCEEEEEeC-C---eEEEEeCCCCC
Q 008393 417 QMRFQPHLGRYLAAAAE----NVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGS 486 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d---~I~iwd~~~~~ 486 (567)
...++++++.++..+.. +.|..+|+.++.. ...+..|...+. .|+++++.|+.... + .|++|++..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 22377788888777653 5899999988643 234555666554 88898887776653 3 5899998743
Q ss_pred CCceEEEeec-CCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcEEEe
Q 008393 487 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 535 (567)
Q Consensus 487 ~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 535 (567)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+
T Consensus 361 ---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 361 ---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp ---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred ---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 3334432 33456677788888888777665 7999999988765533
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-10 Score=114.49 Aligned_cols=225 Identities=9% Similarity=0.035 Sum_probs=151.2
Q ss_pred cccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 326 EEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..+.....+..|++++. ++++...++.|+.||..+... ..+ .....+.+++++++++ ++++ . ++.|.+||..+
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCC
Confidence 34445567889999655 556666788999999987332 223 2457899999999987 4433 3 67899999998
Q ss_pred CeeeEEEeC-------CeeEEEEecCCCEEEEEEC-----------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 405 GSCTRVFKG-------GTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 405 ~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
++....... ....+++.+++..+++... .+.|+.+|.. ++... +..+....+.++|+|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTS
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCC
Confidence 876544321 2466889998775544322 2355556554 33322 22233456789999999
Q ss_pred CEEEEEeC-C-eEEEEeCC--CCCC--CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 467 ELLASVSE-D-SVRVWTVG--SGSE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 467 ~~l~s~s~-d-~I~iwd~~--~~~~--~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
+.|+.+.. + .|.+|++. ++.. ...+..+.........++++++|++.++....+.|.+||..+++.+ .+..+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 97766554 4 89999873 4321 1223333333456788999999986666666789999999988776 555566
Q ss_pred CCeeEEEEe-cCCCEEEEEE
Q 008393 540 GLIAALAVS-TETGYVASAS 558 (567)
Q Consensus 540 ~~V~~l~~s-pdg~~l~s~s 558 (567)
..+++++|. |+++.|+.++
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEE
T ss_pred CCceEEEEeCCCCCEEEEEc
Confidence 789999998 8887665544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-10 Score=111.39 Aligned_cols=232 Identities=11% Similarity=-0.018 Sum_probs=162.2
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
....+.++++.++++++++...++.|.+||.. .......+......+.++++.+++. ++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe
Confidence 45578999999999887777778999999987 3332222333446799999998876 55466667889999988 554
Q ss_pred eEEE-e---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE-EEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEe
Q 008393 408 TRVF-K---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 481 (567)
Q Consensus 408 ~~~~-~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd 481 (567)
.... . .....+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++|+++++...+ .|.+||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 3222 1 245678888887666555557899999998 5544 2333345678999999999976666555 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE--eccccCCeeEEEEecCCCEEEEEEC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
. ++.. ...........+..+++++++..+++....+.|.+||. ++.... ...+...+.+++++++|+++++...
T Consensus 174 ~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 174 N-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp T-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred C-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 8 3321 11122234456889999999875555555678999998 555443 3344567899999999987776656
Q ss_pred CCcEEEcC
Q 008393 560 DKFVKLWK 567 (567)
Q Consensus 560 Dg~I~iWd 567 (567)
++.|.+|+
T Consensus 250 ~~~i~~~~ 257 (300)
T 2qc5_A 250 ANQIGRIT 257 (300)
T ss_dssp TTEEEEEC
T ss_pred CCeEEEEC
Confidence 67787765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-10 Score=112.02 Aligned_cols=226 Identities=13% Similarity=0.123 Sum_probs=153.7
Q ss_pred CCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 286 STSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 286 h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
+..-..+..|++++ .++++...++.|..||..+++.. .+ .....+.+++|+++++++++ . ++.|.+||.++ +..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcE
Confidence 33445588999964 55666667899999999887653 22 24567999999999985544 4 55699999986 332
Q ss_pred eEEecc----CCCcEEEEEEcCCCCeEEEEEeCC--------CcEEEEECCC-CeeeEEEe--CCeeEEEEecCCCEEEE
Q 008393 365 LRTFMG----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINN-GSCTRVFK--GGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 365 ~~~~~~----h~~~V~~l~~~p~~~~li~s~~~d--------g~I~iwd~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~ 429 (567)
...... ....+..+++.++|..++.+...+ ....+|.+.. ++...... .....++|+|++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 222111 124588999999987444332221 2234444432 33332222 34567999999988766
Q ss_pred EEC-CCeEEEEEC--CCCeE-----EEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 430 AAA-ENVVSILDA--ETQAC-----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 430 ~~~-dg~I~i~d~--~~~~~-----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+.. ++.|.+||+ .++.. ...+..+......++++++|++.++...+ .|.+||..++ +.+..+......
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~~ 242 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPVDK 242 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECSSSB
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCCCC
Confidence 655 789999987 45532 22333344567899999999988887777 8999999766 566777777778
Q ss_pred eEEEEEe-CCCCeEEEEEcC
Q 008393 501 FHSCVFH-PTYPSLLVIGCY 519 (567)
Q Consensus 501 i~~~~~s-p~~~~l~~~~~d 519 (567)
+++|+|. |+++.|++++..
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBC
T ss_pred ceEEEEeCCCCCEEEEEcCC
Confidence 9999998 888888777653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=132.38 Aligned_cols=263 Identities=10% Similarity=0.036 Sum_probs=176.3
Q ss_pred ceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeeccc-------Cc
Q 008393 268 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SS 330 (567)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h-------~~ 330 (567)
++|..++ +.+..+.....+ .++|+|||++++++. .++.|.+||..+++.+.++... ..
T Consensus 50 vID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 50 VSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred EEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 4444443 556666544556 799999999998886 3688999999999999998643 12
Q ss_pred cEEEEEECCCCCeEEEEeC--CCcEEE--EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC--
Q 008393 331 LITDVRFSPSMPRLATSSF--DKTVRV--WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-- 404 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-- 404 (567)
....++|+|||++|+++.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.|+.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 3568899999999999875 356888 88876 233321 111 223466666676777899999999887
Q ss_pred ---CeeeEE----EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCC--eEEEEecCC----------CCCeeEEEEcCC
Q 008393 405 ---GSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGH----------TKPIDSVCWDPS 465 (567)
Q Consensus 405 ---~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h----------~~~V~~l~~sp~ 465 (567)
++.... +.-+..... .++++.++..+. +.|.+.|..+. +.+..+... ......++|+++
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred ccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 433211 111111113 777788888777 99999999764 233222111 011223789999
Q ss_pred CCEEEEEe----C------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE-E-cCCeEEEEECCCCcEE
Q 008393 466 GELLASVS----E------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI-G-CYQSLELWNMSENKTM 533 (567)
Q Consensus 466 g~~l~s~s----~------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~-~-~dg~I~iwd~~~~~~~ 533 (567)
++.++.+. . +.+.++|+.+. +.+..+.... ....++|++|+++++++ . .++.|.++|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 98877653 2 36679999887 4555554332 57889999999865555 4 4899999999999988
Q ss_pred EeccccCCeeEEEEec
Q 008393 534 TLTAHEGLIAALAVST 549 (567)
Q Consensus 534 ~~~~h~~~V~~l~~sp 549 (567)
....-......+++.+
T Consensus 351 ~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 351 SSVELDKGPESLSVQN 366 (368)
T ss_dssp EECCCCSCCCEEECCC
T ss_pred EEEECCCCCCEEEeec
Confidence 5544445566666654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-10 Score=109.51 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=150.6
Q ss_pred eEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 290 VICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 290 V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
..+.+|++++ .++++...++.|.+||..+++... +. ....+.+++|+++++++++. .++ |.+||..+. ......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g-~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATG-VLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTC-CEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCC-cEEEEe
Confidence 4578899975 455666678899999998876542 22 34579999999999876654 444 999998763 322221
Q ss_pred cc----CCCcEEEEEEcCCCCeEEEEEeC-----CCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CCeE
Q 008393 369 MG----HSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVV 436 (567)
Q Consensus 369 ~~----h~~~V~~l~~~p~~~~li~s~~~-----dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I 436 (567)
.. ....+.+++++++|..++.+.+. .+.|..++ +++...... .....++|++++..++++.. ++.|
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 11 12468899999998744433221 24566666 455443322 34567899999988776654 6899
Q ss_pred EEEECC--CC-e-----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 437 SILDAE--TQ-A-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 437 ~i~d~~--~~-~-----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.+||.. ++ . ....+......+..++++++|.++++...+ .|.+||. ++ +.+..+......+.+++|.
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEEE
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEEe
Confidence 999985 55 2 233343344567889999999988777665 8999998 33 4556666666779999998
Q ss_pred -CCCCeEEEEEcCC
Q 008393 508 -PTYPSLLVIGCYQ 520 (567)
Q Consensus 508 -p~~~~l~~~~~dg 520 (567)
+++..|++++..+
T Consensus 280 g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 280 GPDASRLLVTSARE 293 (326)
T ss_dssp STTSCEEEEEEBCT
T ss_pred cCCCCEEEEEecCC
Confidence 8888887776543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-11 Score=115.84 Aligned_cols=231 Identities=7% Similarity=0.043 Sum_probs=154.2
Q ss_pred eecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 324 NLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
.+.........+.|+++++ ++++...++.|..|+... . +..+..+...+..+++.++|. ++++...++.|.+|+.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECT
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECC
Confidence 3334445577899999998 566667788999999843 3 345555677899999999986 5545445678999998
Q ss_pred CCCeeeEEEe-------CCeeEEEEecCCCEEEE----EEC-------------CCeEEEEECCCCeEEEEecCCCCCee
Q 008393 403 NNGSCTRVFK-------GGTAQMRFQPHLGRYLA----AAA-------------ENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 403 ~~~~~~~~~~-------~~~~~~~~~~~~~~l~~----~~~-------------dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
. ++...... .....+.+.+++..+++ +.. .+.|+.||..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 54332211 12456889998876664 221 357888888776544333 334567
Q ss_pred EEEEcCCCCEEEEEeC-------CeEEEEeCCCCCCCceEEEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 459 SVCWDPSGELLASVSE-------DSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~-------d~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.++|+|+++.|+.+.. ..|++|++..+. ......+ .........++++++|+ |+++.. +.|.+|+....
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g~ 268 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDGQ 268 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTSC
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCCC
Confidence 8999999997776654 379999986542 1111111 11233345678999998 555554 45999998544
Q ss_pred cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 531 KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
....+..+. .+.+++|+++++.|+.++.++..++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 333444443 5899999999998888887765554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-10 Score=110.97 Aligned_cols=218 Identities=10% Similarity=0.061 Sum_probs=146.1
Q ss_pred EEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 332 ITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 332 V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
...++|++++. ++++...++.|.+||..+ +.. ..+. ....+.+++|.+++..++ +. . ..|.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~~-~~~~v~~i~~~~dg~l~v-~~-~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS-GRK-TVHA-LPFMGSALAKISDSKQLI-AS-D-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT-TEE-EEEE-CSSCEEEEEEEETTEEEE-EE-T-TEEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC-CcE-EEEE-CCCcceEEEEeCCCeEEE-EE-C-CCEEEEECCCCcEEEE
Confidence 56778999755 556666788999999986 332 2332 356799999999976444 33 3 4599999988876544
Q ss_pred EeC-------CeeEEEEecCCCEEEEEEC------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C-
Q 008393 411 FKG-------GTAQMRFQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D- 475 (567)
Q Consensus 411 ~~~-------~~~~~~~~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d- 475 (567)
... ....+.+++++..+++... .+.|+.+| +++... +..+......++|+++|+.|+.+.. +
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 321 2467889998875554432 25677777 454433 2223345678999999987766653 4
Q ss_pred eEEEEeCC--CC-CC--CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe-
Q 008393 476 SVRVWTVG--SG-SE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS- 548 (567)
Q Consensus 476 ~I~iwd~~--~~-~~--~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s- 548 (567)
.|.+||+. ++ .. ...+..+.........++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g 280 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIG 280 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEES
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEec
Confidence 89999985 44 21 12233333334557789999999866666667899999984 5444 555566679999998
Q ss_pred cCCCEEEEEEC
Q 008393 549 TETGYVASASH 559 (567)
Q Consensus 549 pdg~~l~s~s~ 559 (567)
++++.|+.++.
T Consensus 281 ~d~~~L~vt~~ 291 (326)
T 2ghs_A 281 PDASRLLVTSA 291 (326)
T ss_dssp TTSCEEEEEEB
T ss_pred CCCCEEEEEec
Confidence 88877655543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-10 Score=114.31 Aligned_cols=253 Identities=12% Similarity=0.041 Sum_probs=165.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE--
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 375 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V-- 375 (567)
++..+++++.++.|..+|..+++.+................ +..+++++.++.|..+|..+ ++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceee
Confidence 45578888899999999999999887776543322222222 44888889999999999988 44444333221111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE----------E--EEecCCCEEEEEECCCeEEEEE
Q 008393 376 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----------M--RFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 376 ---~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~----------~--~~~~~~~~l~~~~~dg~I~i~d 440 (567)
...... +. .++.+..++.|..+|..+++.+..+...... + .....++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 3446788999999999999988776532110 0 0011357888888899999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEc
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.++++.+..... .....+... +..|+.++.+ .|..+|..++ +.+..... ....+....+ .+..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 999998877653 334445443 5567777777 9999999887 34444431 1222222233 2567999999
Q ss_pred CCeEEEEECCCCcEE-EeccccCCee-EEEEecCCCEEEEEECCCcEEEcC
Q 008393 519 YQSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 519 dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|.|++||..+++.+ ........+. .... .+..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 999999999999877 3333233332 2233 245788889999999875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-10 Score=111.59 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=157.9
Q ss_pred eccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 283 VRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+..+.....+.+|+++|+ +++++..++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g- 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG- 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-
Confidence 334455567899999998 5667777899999998 444 345555677799999999998666665667899999862
Q ss_pred CceeEEeccC-----CCcEEEEEEcCCCCeEEEE----EeC-------------CCcEEEEECCCCeeeEEE-eCCeeEE
Q 008393 362 GYSLRTFMGH-----SASVMSLDFHPNKDDLICS----CDG-------------DGEIRYWSINNGSCTRVF-KGGTAQM 418 (567)
Q Consensus 362 ~~~~~~~~~h-----~~~V~~l~~~p~~~~li~s----~~~-------------dg~I~iwd~~~~~~~~~~-~~~~~~~ 418 (567)
. . ..+..+ ...+..+++.++|. ++++ |.. .+.|+.||..+++..... ......+
T Consensus 117 ~-~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl 193 (305)
T 3dr2_A 117 Q-A-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGL 193 (305)
T ss_dssp C-E-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEE
T ss_pred C-E-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcce
Confidence 2 2 222111 23467899999986 4444 221 256888888776654432 2345678
Q ss_pred EEecCCCEEEEEECC------CeEEEEECCCCeEE--EEe-cCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 419 RFQPHLGRYLAAAAE------NVVSILDAETQACR--LSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 419 ~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~--~~~-~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+|+|++..++++... +.|.+||+...... ..+ .........++++++|++.++ ..+.|.+|+.. + +
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~gv~~~~~~-g---~ 268 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTGVCVFDSD-G---Q 268 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSEEEEECTT-S---C
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCcEEEECCC-C---C
Confidence 999999988887775 78999998765311 111 112344567999999995554 45589999974 3 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.+..+.... .+.+++|.++++.|++++.+ .|+.+++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEEC
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEEC
Confidence 555555444 58889999999988888875 4544443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=123.96 Aligned_cols=245 Identities=9% Similarity=-0.003 Sum_probs=161.8
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcCCCCceeEEeccC-------C
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH-------S 372 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~h-------~ 372 (567)
.|.++|..+++.+.++..-..+ .+.|+||+++++++. .++.|.+||+.+ .+.+.++.-. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccC
Confidence 8889999999999999866566 799999999998886 368899999998 6666666432 1
Q ss_pred CcEEEEEEcCCCCeEEEEEeC-CCcEEE--EECCCCeeeEEEeCCeeEEEEecCCC-EEEEEECCCeEEEEECCC-----
Q 008393 373 ASVMSLDFHPNKDDLICSCDG-DGEIRY--WSINNGSCTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAET----- 443 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~~-dg~I~i--wd~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~----- 443 (567)
.....+.|+|+|++++++... +..|.+ +|+.+ +..+..+.. ..+.|++. .+++.+.|+.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 235679999999988866543 467888 99877 444432211 22334443 445556688888899887
Q ss_pred CeEEEE----ecCCCCCeeEEEEcCCCC-EEEEEeCCeEEEEeCCCCCCCceEEEeecC----------CCceEEEEEeC
Q 008393 444 QACRLS----LQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHP 508 (567)
Q Consensus 444 ~~~~~~----~~~h~~~V~~l~~sp~g~-~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~----------~~~i~~~~~sp 508 (567)
++.... +.....+. . .+++. ++++.. +.|.+.|+.+.. ...+..+... ......++|++
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEeccccccccccccCcceeeEEcC
Confidence 443211 11112333 3 45444 444444 888889986431 1222222111 01111258999
Q ss_pred CCCeEEEEEc-C--------CeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEEEcC
Q 008393 509 TYPSLLVIGC-Y--------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~-d--------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iWd 567 (567)
++++++++.. . +.+.++|+.+.+.+....-......|+|++||+ ++++.. .++.|.++|
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 9999998754 2 356799999998874333333689999999998 456666 589999886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-15 Score=148.44 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=121.7
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCC-cEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVM 376 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 376 (567)
++..|++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+ ++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 577899999999999999999999988876 4555555667787888888999999999987 444333332211 110
Q ss_pred -EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC
Q 008393 377 -SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 455 (567)
Q Consensus 377 -~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 455 (567)
+..+. .+. .+++++.|+.|+.||..+++.+..+..+. ...++|+++.+++++.++.|+.||.++++.+..+..+.
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 00111 223 45577889999999999999887776543 34566788889999999999999999998766554221
Q ss_pred CeeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE--EEcCCeEEEEECCC
Q 008393 456 PIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV--IGCYQSLELWNMSE 529 (567)
Q Consensus 456 ~V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~--~~~dg~I~iwd~~~ 529 (567)
....++..+. ..+++++.+ .|+.||..++ +.+.........+...+++.++...+. ...++.++.+|..+
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~t 236 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS 236 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHH
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhc
Confidence 1223333332 445667777 9999999887 455555433322333344555542110 01133455666555
Q ss_pred Cc
Q 008393 530 NK 531 (567)
Q Consensus 530 ~~ 531 (567)
++
T Consensus 237 G~ 238 (369)
T 2hz6_A 237 GE 238 (369)
T ss_dssp HH
T ss_pred CC
Confidence 54
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-10 Score=113.57 Aligned_cols=259 Identities=10% Similarity=0.051 Sum_probs=168.9
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
+...+.++.+.++|.+++ ++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. +...
T Consensus 58 ~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~--g~~~ 129 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD--GTEK 129 (330)
T ss_dssp GGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT--SCEE
T ss_pred CCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC--CCEE
Confidence 444567788887876444 4444 888886 666655554333333333333 5578888889999999987 3334
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
..+..+...+.++...+++. ++ .++.++.|..||.. ++.+..+.. ....+.+..++ .+++++ +.|..|| .
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~v~t--~~l~~~d-~ 202 (330)
T 3hxj_A 130 WRFKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIYFGS--DKVYAIN-P 202 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEEEES--SSEEEEC-T
T ss_pred EEEcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEEEEe--CEEEEEC-C
Confidence 44444455566677776654 44 57778999999999 777666543 23344555554 455555 8899999 7
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
+++.+..+......+.++.+.++|.+.+....+.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|
T Consensus 203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl 277 (330)
T 3hxj_A 203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHL 277 (330)
T ss_dssp TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEE
T ss_pred CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCE
Confidence 7777777776667788999998887655443348888874 33 3444444444434445565555 58888888899
Q ss_pred EEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 523 ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 523 ~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+.+|. +++.. .+......+.++....++. |..++.+|.+++.
T Consensus 278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 278 YAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp EEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred EEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 99996 55544 4444456677888877776 5558889988864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-10 Score=122.45 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=178.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCc-----------cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----------LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~-----------~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|..+|..+|+.+..+..... ....+++ ++..|++++.|+.|..+|..+ ++.+-.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~t-G~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAAT-GKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 45677777789999999999999988764321 0112333 456889999999999999998 554444
Q ss_pred eccC-C----CcEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCCe---------------------
Q 008393 368 FMGH-S----ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT--------------------- 415 (567)
Q Consensus 368 ~~~h-~----~~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~~--------------------- 415 (567)
+..+ . ..+.+ ..+. +..+++..+ .++.|+.||..+++.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 4433 1 11211 1111 344543332 27899999999999987765311
Q ss_pred --------------eEEEEecCCCEEEEEECCC-------------------eEEEEECCCCeEEEEecC--CC------
Q 008393 416 --------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT------ 454 (567)
Q Consensus 416 --------------~~~~~~~~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~------ 454 (567)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 2467888999998887664 599999999999988764 21
Q ss_pred -CCeeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-----------Cce-----------------
Q 008393 455 -KPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCNG-----------NKF----------------- 501 (567)
Q Consensus 455 -~~V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-----------~~i----------------- 501 (567)
....-+....+| ..|+.++.+ .|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223333477 678888888 99999999884 333332111 011
Q ss_pred -------EEEEEeCCCCeEEEEEcC-------------------------------------------CeEEEEECCCCc
Q 008393 502 -------HSCVFHPTYPSLLVIGCY-------------------------------------------QSLELWNMSENK 531 (567)
Q Consensus 502 -------~~~~~sp~~~~l~~~~~d-------------------------------------------g~I~iwd~~~~~ 531 (567)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889998888876432 689999999999
Q ss_pred EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+-...+..++....+..++.+++.++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-10 Score=124.54 Aligned_cols=261 Identities=11% Similarity=0.096 Sum_probs=172.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc----------E-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~----------V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|..+|..+|+.+..+..+... + ..+.+ .+..|++++.|+.|..+|..++ +.+-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG-~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTG-QRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCC-CEeee
Confidence 557777888899999999999999887643221 0 11222 3558899999999999999984 44433
Q ss_pred ecc--CCC---cEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCC----------------------
Q 008393 368 FMG--HSA---SVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG---------------------- 414 (567)
Q Consensus 368 ~~~--h~~---~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~---------------------- 414 (567)
+.. +.. .+.+ ..+. + ..+++..+ .++.|+.||.++++.+..+...
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVV-N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred ecCcCCCCCCccccCCcEEE-C-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 322 111 1111 1111 3 34443322 3789999999999998776521
Q ss_pred ------------eeEEEEecCCCEEEEEECCC-------------------eEEEEECCCCeEEEEecC--CC-------
Q 008393 415 ------------TAQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT------- 454 (567)
Q Consensus 415 ------------~~~~~~~~~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~------- 454 (567)
-..+.+.++.+.++++..++ .|..+|.++++.+..+.. |.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01467888889999888775 399999999999988764 22
Q ss_pred CCeeEEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC--------------------------------
Q 008393 455 KPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------------------------- 498 (567)
Q Consensus 455 ~~V~~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-------------------------------- 498 (567)
..+.......+|+ +|+.++.+ .++++|..+++. +.......
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1122222223565 78888888 999999988843 22111100
Q ss_pred -------CceEEEEEeCCCCeEEEEEc---------------------------------------------CCeEEEEE
Q 008393 499 -------NKFHSCVFHPTYPSLLVIGC---------------------------------------------YQSLELWN 526 (567)
Q Consensus 499 -------~~i~~~~~sp~~~~l~~~~~---------------------------------------------dg~I~iwd 526 (567)
.....++|+|+...+++... +|.|+.||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 00122688998888877632 36799999
Q ss_pred CCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 527 MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.+++.+-...+..++..-.+...+.+|++++.||.|+.||
T Consensus 462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99999873333333444446667788999999999999986
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-09 Score=108.43 Aligned_cols=253 Identities=8% Similarity=0.075 Sum_probs=162.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC---------ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS---------SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~---------~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
+..|++++.++.|..||.++++.+....... ..+.+.. ..++..|++++.++.|..+|..+ ++.+-.+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSD-GTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCC-CCEEEEEe
Confidence 5577788889999999999999887766421 2232221 12355888899999999999998 44443333
Q ss_pred cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEE------EEecCCCEEEEEECCCeEEEEECCC
Q 008393 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM------RFQPHLGRYLAAAAENVVSILDAET 443 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~dg~I~i~d~~~ 443 (567)
............ + . .++.++.++.|..+|..+++.+..+....... .....++.++++..++.|..+|..+
T Consensus 131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTT
T ss_pred CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCC
Confidence 222211112222 2 3 44477889999999999999887776432211 0111257788888899999999999
Q ss_pred CeEEEEecCCCCC----------e-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 444 QACRLSLQGHTKP----------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 444 ~~~~~~~~~h~~~----------V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
++.+......... + ....+ .+..++.++.+ .|..+|..++ +.+..... .....+.. ++.
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~~ 278 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DGN 278 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ETT
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--ECC
Confidence 9988776532110 1 11111 24566667766 9999999887 34433332 22333343 466
Q ss_pred eEEEEEcCCeEEEEECCCCcEE-Eec-cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|++++.++.|+.+|..+++.. ... .....+..+.+. +..|+.++.+|.|.+||
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 7999999999999999999876 333 122233333432 45788888888888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-08 Score=95.56 Aligned_cols=245 Identities=10% Similarity=0.017 Sum_probs=159.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCeee-----eeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCC
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSA 373 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~-----~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~ 373 (567)
.+|+.+. .+.|+.++++..... ..+......+..++|++++..|+.+. .++.|.+++++. ......+.....
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCC
Confidence 3455554 347888887654321 12222234578999999766666554 568899999976 332233333335
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACR 447 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~ 447 (567)
....+++++++..++++....+.|.++++.......... .....++++++++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 789999999877888777778899999987544333332 245778999988888777753 68888887654322
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEE
Q 008393 448 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLEL 524 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~i 524 (567)
............+++++++..|+.+... .|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 2222233467899999988777766654 8999998643 1122222 22334556654 556776664 479999
Q ss_pred EECCCCcEE-Eecccc-CCeeEEEEecCCC
Q 008393 525 WNMSENKTM-TLTAHE-GLIAALAVSTETG 552 (567)
Q Consensus 525 wd~~~~~~~-~~~~h~-~~V~~l~~spdg~ 552 (567)
+|..+++.. .+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999988876 333222 2477888888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-09 Score=106.83 Aligned_cols=217 Identities=10% Similarity=0.008 Sum_probs=148.3
Q ss_pred CCCCeEEEE-eCCCcEEEEEcCCCC---ceeEEec------c-CCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEE
Q 008393 339 PSMPRLATS-SFDKTVRVWDADNPG---YSLRTFM------G-HSASVMSLDFHPNKDDLICSCDGD------GEIRYWS 401 (567)
Q Consensus 339 p~~~~l~s~-s~dg~I~iwd~~~~~---~~~~~~~------~-h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd 401 (567)
.+.++|+.. ..++.|.|+|+.+.. +..+++. . .......+...|+| +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 777777655 557889999997532 3344442 1 11245667888998 55566555 7899999
Q ss_pred CCCCeeeEEEeCC------eeEEEEecCCCEEEEEE-------------------CCCeEEEEECCCCeEEEEecCCC--
Q 008393 402 INNGSCTRVFKGG------TAQMRFQPHLGRYLAAA-------------------AENVVSILDAETQACRLSLQGHT-- 454 (567)
Q Consensus 402 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~-------------------~dg~I~i~d~~~~~~~~~~~~h~-- 454 (567)
.++.+.+..+..+ ...+.|+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888632 23477899999777774 36899999999998888776531
Q ss_pred CCeeEEEE--cCCCCEEEEEeC-----C--eEEEEeCCCCCCCceEEEe--ec----------------CCCceEEEEEe
Q 008393 455 KPIDSVCW--DPSGELLASVSE-----D--SVRVWTVGSGSEGECVHEL--SC----------------NGNKFHSCVFH 507 (567)
Q Consensus 455 ~~V~~l~~--sp~g~~l~s~s~-----d--~I~iwd~~~~~~~~~i~~~--~~----------------~~~~i~~~~~s 507 (567)
.....|.| +|++++++++++ . +|.+|....+ ....+..+ .. .......+.++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445655 999998888876 4 7777666432 11222211 11 02446788999
Q ss_pred CCCCeEEEEEcC-CeEEEEECCCC---cEE-Eeccc--------------cCCeeEEEEecCCCEEEEEE
Q 008393 508 PTYPSLLVIGCY-QSLELWNMSEN---KTM-TLTAH--------------EGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 508 p~~~~l~~~~~d-g~I~iwd~~~~---~~~-~~~~h--------------~~~V~~l~~spdg~~l~s~s 558 (567)
+||++|+++... +.|.+||+... +.+ .+... .+....++++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999998774 69999998633 223 12111 01368899999999999887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-10 Score=123.83 Aligned_cols=233 Identities=11% Similarity=0.089 Sum_probs=153.2
Q ss_pred cCccEEEEEECCCCCeEEEEe-----CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--------
Q 008393 328 HSSLITDVRFSPSMPRLATSS-----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------- 394 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-------- 394 (567)
|...+..+.|+|||++||.+. ....|++||++++......+.. .....++|+ |++.++++...+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 555788999999999888543 2357999999984322222221 112467899 988887655432
Q ss_pred ----CcEEEEECCCCee--eEEEeCC------eeEEEEecCCCEEEEEEC----CCeEEEEECCCCe-EEEEecCCCCCe
Q 008393 395 ----GEIRYWSINNGSC--TRVFKGG------TAQMRFQPHLGRYLAAAA----ENVVSILDAETQA-CRLSLQGHTKPI 457 (567)
Q Consensus 395 ----g~I~iwd~~~~~~--~~~~~~~------~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~-~~~~~~~h~~~V 457 (567)
..|++|++.+... ...+... ...+.++|++..+++... .+.|+++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 3499999987653 3333321 356789999998876654 2589999998763 344555566655
Q ss_pred eEEEEcCCCCEEEEEeC----C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCC
Q 008393 458 DSVCWDPSGELLASVSE----D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSE 529 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~----d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~ 529 (567)
... |+++|..|+..+. . .|.++|+.++.. .....+..+...+. .|++++++|++...++ .|++||+.+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 555 6666666555542 2 689999987532 12234445555554 8999999888776654 799999987
Q ss_pred CcEEEec-cccCCeeEEEEecCCCEEEEEECC----CcEEEcC
Q 008393 530 NKTMTLT-AHEGLIAALAVSTETGYVASASHD----KFVKLWK 567 (567)
Q Consensus 530 ~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~D----g~I~iWd 567 (567)
+....+. ...+.+..+.++++++.|+....+ +.|+.||
T Consensus 360 ~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 360 KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 6655443 344567778888888766655444 6676664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-09 Score=105.39 Aligned_cols=221 Identities=10% Similarity=0.063 Sum_probs=154.2
Q ss_pred EEc--CCCCeEEE-EeCCCcEEEEeCCCC----eeeeeec-------ccCccEEEEEECCCCCeEEEEeCC------CcE
Q 008393 294 HFS--SDGKLLAT-GGHDKKAVLWHTDTL----KSKTNLE-------EHSSLITDVRFSPSMPRLATSSFD------KTV 353 (567)
Q Consensus 294 ~~s--~dg~~las-g~~dg~I~vwd~~~~----~~~~~l~-------~h~~~V~~i~fsp~~~~l~s~s~d------g~I 353 (567)
.++ .++++|++ +..++.|.|+|+.+. +.+.+++ .-...-..+...|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 78887766 456789999999765 6666663 111245567888999 76666555 789
Q ss_pred EEEEcCCCCceeEEeccCC---CcEEEEEEcCCCCeEEEEEe-------------------CCCcEEEEECCCCeeeEEE
Q 008393 354 RVWDADNPGYSLRTFMGHS---ASVMSLDFHPNKDDLICSCD-------------------GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~li~s~~-------------------~dg~I~iwd~~~~~~~~~~ 411 (567)
.++|.++ .+.+..+.... ..-+.+.|+|+++.++ +.. .+..|.+||+.+++.+..+
T Consensus 167 ~vlD~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCC-CeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998 66666665221 2234688899988555 442 3689999999999888887
Q ss_pred eCC-----eeEEEE--ecCCCEEEEEEC------CCeEEEEECCCCeE--EEEe--cCC----------------CCCee
Q 008393 412 KGG-----TAQMRF--QPHLGRYLAAAA------ENVVSILDAETQAC--RLSL--QGH----------------TKPID 458 (567)
Q Consensus 412 ~~~-----~~~~~~--~~~~~~l~~~~~------dg~I~i~d~~~~~~--~~~~--~~h----------------~~~V~ 458 (567)
.-+ ...+.| +|++.++++++. ++.|.+|....++. ...+ ... .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 753 233445 999998888775 55787765544421 1111 110 23467
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCC--------------ceEEEEEeCCCCeEEEEE
Q 008393 459 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN--------------KFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~--------------~i~~~~~sp~~~~l~~~~ 517 (567)
.|.+++||++|+++..+ .|.+||+......+.+..+...+. .-..+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 89999999999999876 899999975545566666655421 357789999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=119.38 Aligned_cols=251 Identities=11% Similarity=0.082 Sum_probs=166.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeeccc-C----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCcee
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-S----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSL 365 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h-~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~ 365 (567)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+.. ... .+..+++++. ++.|+.||..+ ++.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~t-G~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAET-GERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTT-CCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCC-CcEE
Confidence 4568888889999999999999999888754 1 11211 111 1335555543 78999999998 4444
Q ss_pred EEeccCCC--------------------------------cEEEEEEcCCCCeEEEEEeCCC------------------
Q 008393 366 RTFMGHSA--------------------------------SVMSLDFHPNKDDLICSCDGDG------------------ 395 (567)
Q Consensus 366 ~~~~~h~~--------------------------------~V~~l~~~p~~~~li~s~~~dg------------------ 395 (567)
-.+..... ....++++++++.++ .+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeee
Confidence 33322111 113577888876555 555443
Q ss_pred -cEEEEECCCCeeeEEEeCC------------eeEEEEecCC---CEEEEEECCCeEEEEECCCCeEEEEecCCCCC---
Q 008393 396 -EIRYWSINNGSCTRVFKGG------------TAQMRFQPHL---GRYLAAAAENVVSILDAETQACRLSLQGHTKP--- 456 (567)
Q Consensus 396 -~I~iwd~~~~~~~~~~~~~------------~~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--- 456 (567)
.|..+|.++++.+..+... ...+....++ ..++++..+|.|+++|.++++.+..+......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 5999999999998887531 1122233355 56777888999999999999998776532100
Q ss_pred --------e------------------------eEEEEcCCCCEEEEEeC------------------------------
Q 008393 457 --------I------------------------DSVCWDPSGELLASVSE------------------------------ 474 (567)
Q Consensus 457 --------V------------------------~~l~~sp~g~~l~s~s~------------------------------ 474 (567)
+ ..++|+|++.++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 1 15688998888877532
Q ss_pred --------------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-cc
Q 008393 475 --------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AH 538 (567)
Q Consensus 475 --------------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h 538 (567)
+.|..||+.++ +.+..+.. ...+....+...+..+++++.++.|++||..+++.+ .+. .+
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 26889999887 45555443 233444567778888999999999999999999987 343 33
Q ss_pred cCCeeEEEEecCCCEEEE
Q 008393 539 EGLIAALAVSTETGYVAS 556 (567)
Q Consensus 539 ~~~V~~l~~spdg~~l~s 556 (567)
.....-+.|..+|+.++.
T Consensus 519 ~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCCEEEEeCCEEEEE
Confidence 333445667788875443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-10 Score=115.83 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=128.5
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-------------eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------------CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.+..|++++... ++++|+.+ .+++|++.... ....+.. +..++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 588899999866 55577766 56669865332 2333445 888999 77888877 889999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+.+.........|...+.++.+.+.. +++++.| .|.+||+..+. ... ....|.+++|+|+| +++|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98876665666778889888877653 7777777 99999998653 222 23579999999999 7889999
Q ss_pred CeEEEEECCCCcE---EEe------c---cccCCeeEEEEecCCCEEEEEE
Q 008393 520 QSLELWNMSENKT---MTL------T---AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 520 g~I~iwd~~~~~~---~~~------~---~h~~~V~~l~~spdg~~l~s~s 558 (567)
|.|++|+...+.. .++ . +|...|.+|.|.+++.++++-+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999888773 244 2 3778899999999998887643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-09 Score=116.56 Aligned_cols=251 Identities=11% Similarity=0.101 Sum_probs=161.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeeccc--CccEEEEEECC---CCCeEEEEe------CCCcEEEEEcCCCCceeE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fsp---~~~~l~s~s------~dg~I~iwd~~~~~~~~~ 366 (567)
++..|++++.|+.|..+|.++|+.+..+... ......+..+| ++ .+++++ .+|.|+.||..+ ++.+-
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAET-GKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT-CCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCC-CcEEE
Confidence 3568888889999999999999998877642 11111111122 44 444443 378999999998 44433
Q ss_pred Eecc-C------------------------------CCcEEEEEEcCCCCeEEEEEeCCC-------------------c
Q 008393 367 TFMG-H------------------------------SASVMSLDFHPNKDDLICSCDGDG-------------------E 396 (567)
Q Consensus 367 ~~~~-h------------------------------~~~V~~l~~~p~~~~li~s~~~dg-------------------~ 396 (567)
.+.. . ......+++.++++ +++.+..++ .
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 3321 0 01112577888765 455676665 3
Q ss_pred EEEEECCCCeeeEEEeCC------------eeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCC-C-----
Q 008393 397 IRYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT-K----- 455 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~----- 455 (567)
|..||.++++.+..+... ........++. .++++..+|.++++|.++++.+....... .
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence 999999999999877631 01111222443 57777789999999999999875432211 0
Q ss_pred ---------------------------------CeeEEEEcCCCCEEEEEeC----------------------------
Q 008393 456 ---------------------------------PIDSVCWDPSGELLASVSE---------------------------- 474 (567)
Q Consensus 456 ---------------------------------~V~~l~~sp~g~~l~s~s~---------------------------- 474 (567)
....++|+|+..+|++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0123788998887776521
Q ss_pred -----------------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee
Q 008393 475 -----------------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL 535 (567)
Q Consensus 475 -----------------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~ 535 (567)
+ .|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 2 6888999887 5555554433 2333366677888999999999999999999988 44
Q ss_pred ccc-cCCeeEEEEecCCCEEE
Q 008393 536 TAH-EGLIAALAVSTETGYVA 555 (567)
Q Consensus 536 ~~h-~~~V~~l~~spdg~~l~ 555 (567)
... .....-+.|..+|+.++
T Consensus 513 ~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 513 PAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp ECSSCCCSCCEEEEETTEEEE
T ss_pred eCCCCcccCceEEEECCEEEE
Confidence 433 22234567778887443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-10 Score=113.29 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=167.3
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+..+..+| .|.+++.++.|..|| .+++.......+...+.++...+++. |+.++.+ |..||. + +..+..+...
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~-g~~~~~~~~~ 96 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-D-GTEKWRFDTK 96 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-C-GGGGGGSCC-
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-C-CcEEEEEECC
Confidence 34555566 456677788999999 88888877766666677888877774 5555555 888886 3 3333222222
Q ss_pred CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE
Q 008393 372 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 448 (567)
........+. + ..++ .++.++.|..+|.. ++....+... ...+...++ +.+++++.++.|..||.. ++.+.
T Consensus 97 ~~~~~~~~~~-~-~~l~-v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 97 KAIVSDFTIF-E-DILY-VTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ----CCEEEE-T-TEEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEE
T ss_pred CCcccCceEE-C-CEEE-EEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeE
Confidence 2222233333 3 3344 67788999999998 7766555432 233444444 557778888999999999 88777
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 449 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 449 ~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+......+.++.+.+++.+++.. +.|..|| .++ ..+.........+.++.+.+++. |++++.++.|..+|..
T Consensus 171 ~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD 243 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred EEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence 776666678888888888866554 8889999 554 34445554556677778888775 7778888899999854
Q ss_pred CCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
......+......+.++.+.+++. |..++.+|.|..+|
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 444434444444455666665664 55677777777664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=110.09 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=149.7
Q ss_pred ccEEEEEECCCCCeEEEEe--CCCcEEEEEcCCCCceeEEe-------ccCCCcEEEEEEcCCCCeEEEEEeC-----CC
Q 008393 330 SLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDG-----DG 395 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~p~~~~li~s~~~-----dg 395 (567)
.....|+++++|+++++.. .++.++||.+++ +. +..+ ..|...+..+++++++. |+++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 6789999999999888864 234356666653 43 2222 23457899999999865 5544333 57
Q ss_pred cEEEEECCCCeeeEEEeC---------CeeEEEEecCCCEEEEEE----CCCeEEEEECCCCeEEEEecCCCCCee-EEE
Q 008393 396 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAA----AENVVSILDAETQACRLSLQGHTKPID-SVC 461 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~----~dg~I~i~d~~~~~~~~~~~~h~~~V~-~l~ 461 (567)
.|.+||+.+++.++.+.. ....+++.++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999999987776653 247889998777776665 468999999999988777765432211 133
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECC---CCc-----
Q 008393 462 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS---ENK----- 531 (567)
Q Consensus 462 ~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~---~~~----- 531 (567)
+..+|..+.+...+ .++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 44567666666666 655553 1356789999999999988776 66666532 111
Q ss_pred ---EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 ---TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ---~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+...++.+....++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012224455677899999999888888888999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-09 Score=112.25 Aligned_cols=254 Identities=10% Similarity=0.051 Sum_probs=171.4
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeecc---------------------------------cC------ccEEEEEECC---
Q 008393 302 LATGGHDKKAVLWHTDTLKSKTNLEE---------------------------------HS------SLITDVRFSP--- 339 (567)
Q Consensus 302 lasg~~dg~I~vwd~~~~~~~~~l~~---------------------------------h~------~~V~~i~fsp--- 339 (567)
|.+|+..|.|+|+-+.+++.+..+.- +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 45677888888888777766655421 01 1122344554
Q ss_pred --CCCeEEEEeC-CCcEEEEEcCCCCceeEEecc-CCCcEEEEEE-c-CCCCeEEEEE-----------------eCCCc
Q 008393 340 --SMPRLATSSF-DKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-H-PNKDDLICSC-----------------DGDGE 396 (567)
Q Consensus 340 --~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~-~-p~~~~li~s~-----------------~~dg~ 396 (567)
||++|+.+.. +..|.+.|+++ .++...+.- ....+..+++ . |+++++++++ -.++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t-~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCC-ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 55699999998 565554432 2355888998 4 8998887664 33568
Q ss_pred EEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCC--------------------------------------eE
Q 008393 397 IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN--------------------------------------VV 436 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg--------------------------------------~I 436 (567)
|.++|..+.+.+..+. +...-+.++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999998887765 3445678999999998888543 37
Q ss_pred EEEECCC--CeE-EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCC--------CC-ceEEEeecCCCceE
Q 008393 437 SILDAET--QAC-RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGS--------EG-ECVHELSCNGNKFH 502 (567)
Q Consensus 437 ~i~d~~~--~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~--------~~-~~i~~~~~~~~~i~ 502 (567)
.+.|.++ ++. +..+.. .....++.++|||+++++++.. +|.++|+.+.. .. ..+..+ .-+....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence 7777777 433 334432 2345689999999999988866 89999998531 01 122333 3455678
Q ss_pred EEEEeCCCCeEEE-EEcCCeEEEEECCC----------CcEE-EeccccCC-----eeEEEEecCCCEEEEEEC
Q 008393 503 SCVFHPTYPSLLV-IGCYQSLELWNMSE----------NKTM-TLTAHEGL-----IAALAVSTETGYVASASH 559 (567)
Q Consensus 503 ~~~~sp~~~~l~~-~~~dg~I~iwd~~~----------~~~~-~~~~h~~~-----V~~l~~spdg~~l~s~s~ 559 (567)
.++|+++| ++++ ...++.|.+||+.+ ...+ ++..|-.+ -..+.++|||++|+++..
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 88999999 5554 45678999999976 3334 44444332 123345899999998763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-08 Score=93.82 Aligned_cols=203 Identities=9% Similarity=0.043 Sum_probs=144.9
Q ss_pred eeeeeecccC--ccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCC
Q 008393 320 KSKTNLEEHS--SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD 394 (567)
Q Consensus 320 ~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~d 394 (567)
+.+.++. |. .....+.|++++.++++.+. ++.|.++|+.+ ++.+..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455553 33 23678999998644444443 57899999998 55555543 222233456665 56788777789
Q ss_pred CcEEEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-----CCeeEEEEcCCCCE
Q 008393 395 GEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGEL 468 (567)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~ 468 (567)
+.|.++|..+.+.+..+..+ .....+.+++++++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 99999999999999988755 4456677788888888888999999999998887776321 246788888 7765
Q ss_pred EEEEeCC-eEEEEeCCCCCCCceEEEeecC-------------CCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC
Q 008393 469 LASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 530 (567)
Q Consensus 469 l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 530 (567)
++....+ .|.+.|..++ +.+..+... ......++|+|+++.+++++. .+.|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5555444 9999999887 455555432 135689999999988777765 568888887654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-11 Score=121.30 Aligned_cols=200 Identities=11% Similarity=0.055 Sum_probs=110.5
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEE-
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM- 418 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~- 418 (567)
++..|++++.||.|+.||..+ ++.+..+.. +.+.+..+..++. ++++++.|+.|+.||..+++.+..+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 467899999999999999998 555555554 4455555555544 55577889999999999998876654321100
Q ss_pred --E-EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 419 --R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 --~-~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
. ....++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++.+ .|+.||.++++..-... .
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~ 158 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-Y 158 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-E
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-c
Confidence 0 11135678888889999999999999988877553 23456788888888888 99999999885432222 1
Q ss_pred ecCCCceEEEEEeCCC---CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeE-EEEecCCC
Q 008393 495 SCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA-LAVSTETG 552 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~-l~~spdg~ 552 (567)
.. ....++..+. ..+++++.++.|+.||..+++.+-......++.. ..++.++.
T Consensus 159 ~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 159 FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred cc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 11 1122333332 5688899999999999999987733334445443 34455554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-08 Score=109.38 Aligned_cols=261 Identities=12% Similarity=0.113 Sum_probs=168.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc----------E-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~----------V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|..+|..+|+.+.++...... + ..+.+ .+..|++++.|+.|..+|..++ +.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG-~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTG-KAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCC-CEeee
Confidence 456777778899999999999998887643211 0 11222 3457888999999999999984 44433
Q ss_pred eccC-C---CcEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCC----e------------------
Q 008393 368 FMGH-S---ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG----T------------------ 415 (567)
Q Consensus 368 ~~~h-~---~~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~----~------------------ 415 (567)
+... . ..+.+ ..+. +..+++..+ .+|.|+.||.++++.+..+... .
T Consensus 143 ~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 3321 1 11111 1111 234443322 2589999999999998877521 0
Q ss_pred ------------eEEEEecCCCEEEEEECCC-------------------eEEEEECCCCeEEEEecC--CC-------C
Q 008393 416 ------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT-------K 455 (567)
Q Consensus 416 ------------~~~~~~~~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~-------~ 455 (567)
..+++.+..+.++++..++ .|..+|.++++.+..+.. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 1367888888888887765 499999999999988764 22 2
Q ss_pred CeeEEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC------------Cc-------------------
Q 008393 456 PIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG------------NK------------------- 500 (567)
Q Consensus 456 ~V~~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~------------~~------------------- 500 (567)
+.....+..+|+ +|+.++.+ .++++|..+++. +....... .+
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 222233334665 67788888 999999988843 32111110 00
Q ss_pred -----eEEEEEeCCCCeEEEEE------------------------------------cCCeEEEEECCCCcEEEecccc
Q 008393 501 -----FHSCVFHPTYPSLLVIG------------------------------------CYQSLELWNMSENKTMTLTAHE 539 (567)
Q Consensus 501 -----i~~~~~sp~~~~l~~~~------------------------------------~dg~I~iwd~~~~~~~~~~~h~ 539 (567)
...++++|+...+++.. .+|.|+.||+.+++.+-...+.
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 11257888777666522 2378999999999987322233
Q ss_pred CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 540 GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+....+...+.+|++++.||.|+.||
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 3444445556788899999999999885
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-08 Score=91.98 Aligned_cols=190 Identities=14% Similarity=0.176 Sum_probs=136.6
Q ss_pred eeeeeecccC--ccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEEeccCCCcE--EEEEEcCCCCeEEEEEeC
Q 008393 320 KSKTNLEEHS--SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDG 393 (567)
Q Consensus 320 ~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~~p~~~~li~s~~~ 393 (567)
+.+.++. |. .....+.|+ ++.++.+.+.+| .|+++|+++ ++.+..+.-. ... ..+++. ++.+++....
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIELG-KRYFGEGISDW--KDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEECC-TTCCEEEEEEE--TTEEEEEESS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEecC-CccceeEEEEe--CCEEEEEEee
Confidence 3445553 33 335788888 666666667666 899999998 5555555432 233 334444 5677777777
Q ss_pred CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC--C---CCeeEEEEcCCCCE
Q 008393 394 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGEL 468 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~---~~V~~l~~sp~g~~ 468 (567)
++.+.+||..+.+.+..+..+.....+.++++.++++..++.|.++|..+.+.+..+.-. . ..++.+.|. +|++
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 999999999999999999876555666678888888887889999999999888776542 1 335567886 7766
Q ss_pred EEEEeCC-eEEEEeCCCCCCCceEEEeecC------------CCceEEEEEeCCCCeEEEEEcC
Q 008393 469 LASVSED-SVRVWTVGSGSEGECVHELSCN------------GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 469 l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~------------~~~i~~~~~sp~~~~l~~~~~d 519 (567)
++....+ .|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6555455 9999999888 444444432 2457899999999999888875
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-06 Score=97.72 Aligned_cols=265 Identities=11% Similarity=0.099 Sum_probs=176.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+...|.++...++|.+.+ |+.++-|.+||..+++....... ....|.++...++|.+.+ |+.+| |.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcC
Confidence 356789999888886555 44455588999887665433221 245699999998886544 44555 899998
Q ss_pred CCCCceeEEecc--------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---------CCeeEEEEe
Q 008393 359 DNPGYSLRTFMG--------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 421 (567)
Q Consensus 359 ~~~~~~~~~~~~--------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~ 421 (567)
.+ .. +..+.. ....|.+|...++|..+ .|+.++-|.+|+..+........ ..+.++...
T Consensus 290 ~~-~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GT-DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMW--LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TT-TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEE--EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CC-Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEE--EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 76 33 222221 23579999999887633 46677889999876654332211 134556555
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEecC--------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 422 PHLGRYLAAAAENVVSILDAETQACRLSLQG--------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+ +.+.+++.++.|..||..+++....... ....|.+++.+++|++|..|+.+ .|.+||..++. +.
T Consensus 366 ~~-g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~ 440 (795)
T 4a2l_A 366 KD-KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VE 440 (795)
T ss_dssp TT-SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EE
T ss_pred CC-CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EE
Confidence 55 5677788888899999988765433211 23579999999999855667765 89999987652 22
Q ss_pred Eee-----cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-------ccCCeeEEEEecCCCEEEEEECC
Q 008393 493 ELS-----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 493 ~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+.. .+
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC
Confidence 222 2345688888888887 555655 569999998876654332 23578999999888866644 34
Q ss_pred CcEEEc
Q 008393 561 KFVKLW 566 (567)
Q Consensus 561 g~I~iW 566 (567)
| |..|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 4 5444
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-07 Score=86.65 Aligned_cols=219 Identities=9% Similarity=0.009 Sum_probs=139.6
Q ss_pred CeEEEEeCCCcEEEEEcCCCCce----eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CC
Q 008393 342 PRLATSSFDKTVRVWDADNPGYS----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG 414 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~----~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~ 414 (567)
.+|+.+.. +.|+.++++..... ...+......+..++|++++..++++...++.|..+++........+. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555553 46888888763221 111222234578999999888888787778999999998765544443 25
Q ss_pred eeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe-C--C-eEEEEeCCCCCCCc
Q 008393 415 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E--D-SVRVWTVGSGSEGE 489 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~--d-~I~iwd~~~~~~~~ 489 (567)
...+++.++++.++++.. .+.|.+++...................++++|++..|+.+. . . .|..+++... ...
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcE
Confidence 678899998888777765 67999999876433222322224578999999655555444 2 3 7888887532 212
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE-CCCcEEEc
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
.+ ..........+++++++..|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 22 11233457889999998888777654 69999999865544332223345566654 44555554 44667655
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-07 Score=90.11 Aligned_cols=200 Identities=8% Similarity=0.033 Sum_probs=138.8
Q ss_pred ceeeeeeccCCC--CeEEEEEcCCCCeEEEEeC--CCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEe-CC
Q 008393 277 FKEANSVRASTS--KVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSS-FD 350 (567)
Q Consensus 277 ~~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~--dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s-~d 350 (567)
++.+.++. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+.+. .+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34555553 443 3579999999755555443 5899999999999998875322 223345554 44555554 57
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------eeEEEEec
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRFQP 422 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--------~~~~~~~~ 422 (567)
+.|.++|..+ .+.+.++...... ...+++++..++++. .++.|.++|..+.+.+..+.-. ...+.|.
T Consensus 86 ~~v~viD~~t-~~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRT-LSNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTT-TEEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCC-CcEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 8999999997 6666666422111 233556788888654 6889999999999888776632 3456666
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCeEEEEecCC-------------CCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC
Q 008393 423 HLGRYLAAAA-ENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 423 ~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h-------------~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~ 485 (567)
+ +.+++... ++.|.+.|..+++.+..+... ....+.|+|+|+++.|++++.. .|.+.++...
T Consensus 161 d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 56666664 789999999999998887632 1356899999999877777655 8888887543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-06 Score=95.93 Aligned_cols=263 Identities=8% Similarity=0.049 Sum_probs=176.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|.++...++|.+.+ |+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 46799999999987655 4444 688999887765443221 235799999998885 5556666669999876
Q ss_pred CCCceeEEecc-------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----------CCeeEEEEe
Q 008393 360 NPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----------GGTAQMRFQ 421 (567)
Q Consensus 360 ~~~~~~~~~~~-------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----------~~~~~~~~~ 421 (567)
+.. +..+.. ....|.++...+++..+ .|+.++-|..||..++....... ..+.++...
T Consensus 339 ~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW--iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW--IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEE--EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred ccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEE--EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 522 222221 24569999998887633 47777789999998776544321 234566666
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEec----CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEee--
Q 008393 422 PHLGRYLAAAAENVVSILDAETQACRLSLQ----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-- 495 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~----~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~-- 495 (567)
.++..+.+++.++.|.+||..+++...... .....|.++...++|.+.+... +.|.+||..++ . +..+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~-~~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---S-FTTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---E-EEECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---e-EEEcccc
Confidence 665548888888889999999886554322 1345799999999888766554 67889998654 1 22221
Q ss_pred -----cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-------cccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 496 -----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-------AHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 496 -----~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
.....|.++...++|. |.+++. +.|..||..+++. .+. .....|.++...++|.+.++. ..| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence 1235688888888887 555555 6799999877665 332 234578999998888866544 344 4
Q ss_pred EEc
Q 008393 564 KLW 566 (567)
Q Consensus 564 ~iW 566 (567)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-07 Score=98.79 Aligned_cols=259 Identities=11% Similarity=0.090 Sum_probs=163.4
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCeeeeeecccCcc-----------EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 299 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSSL-----------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 299 g~~lasg~~-dg~I~vwd~-~~~~~~~~l~~h~~~-----------V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
+..+++++. ++.|..+|. .+++.+..+...... ...+++ .+..|++++.|+.|..+|..+ ++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t-G~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKT-GKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCC-CCEE
Confidence 446666666 889999999 899998776532210 011222 355888888999999999998 4443
Q ss_pred EEeccCC----CcEEE-EEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEeCCe-------------------
Q 008393 366 RTFMGHS----ASVMS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGGT------------------- 415 (567)
Q Consensus 366 ~~~~~h~----~~V~~-l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~~~~------------------- 415 (567)
-.+.... ..+.+ .... +..++ .+.. ++.|+.+|..+++.+..+....
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~--~g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVA--KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEE--TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEecCCCCCccceeccCCEEE--CCEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 3322111 01111 1111 24454 4443 7999999999999988765321
Q ss_pred ----------------------eEEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecCC--C-
Q 008393 416 ----------------------AQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGH--T- 454 (567)
Q Consensus 416 ----------------------~~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h--~- 454 (567)
..+++.+..+.++++..+ +.|..+|.++++.+..+... .
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 125667777888877642 36999999999998887632 1
Q ss_pred -------CCeeEEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-------------Cce---------
Q 008393 455 -------KPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------NKF--------- 501 (567)
Q Consensus 455 -------~~V~~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-------------~~i--------- 501 (567)
.++. +....+|+ +++.++.+ .++++|..+++ .+....... .++
T Consensus 296 ~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 296 WDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp SCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred cccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCC
Confidence 1221 22224674 56777777 99999998873 333332211 111
Q ss_pred -----------------EEEEEeCCCCeEEEEEc-------------------------------------CCeEEEEEC
Q 008393 502 -----------------HSCVFHPTYPSLLVIGC-------------------------------------YQSLELWNM 527 (567)
Q Consensus 502 -----------------~~~~~sp~~~~l~~~~~-------------------------------------dg~I~iwd~ 527 (567)
..++++|+...|++... ++.|+.||+
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 23578888887777642 468999999
Q ss_pred CCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 528 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 528 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+++.+-...+...+....+...+.+|+.++.||.|+.||
T Consensus 452 ~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 452 TTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 9998773222333333333344566777889999998875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-07 Score=89.66 Aligned_cols=181 Identities=11% Similarity=0.080 Sum_probs=131.4
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
....+.|+ ++.++++.+.+|.|+++|+++ ++.+..+.........+++. ++.++.....++.+.+||..+.+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 34678887 355677778888999999998 55555542222222345554 567777777899999999999999999
Q ss_pred EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC--C---CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 411 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~---~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
+........+.++++.++++..++.|.++|..+.+.+.++.-. . ..++.+.|. +|++++..... .|.+.|..+
T Consensus 132 i~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 132 TRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp EECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred EeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 8865554555677888888888999999999999888777542 1 245677887 77666555445 999999988
Q ss_pred CCCCceEEEeec-------------CCCceEEEEEeCCCCeEEEEEcC
Q 008393 485 GSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 485 ~~~~~~i~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 211 G---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 211 G---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp C---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred C---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 8 44444432 22457899999998888887764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-07 Score=98.67 Aligned_cols=261 Identities=10% Similarity=0.055 Sum_probs=163.1
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCeeeeeecccCcc-----------EEEEEECCCCCe----EEEEeCCCcEEEEEcCCC
Q 008393 299 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSSL-----------ITDVRFSPSMPR----LATSSFDKTVRVWDADNP 361 (567)
Q Consensus 299 g~~lasg~~-dg~I~vwd~-~~~~~~~~l~~h~~~-----------V~~i~fsp~~~~----l~s~s~dg~I~iwd~~~~ 361 (567)
+..|++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666666 889999999 899998877643211 123455444444 888999999999999984
Q ss_pred CceeEEeccCC----CcEEE-EEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCee--------------
Q 008393 362 GYSLRTFMGHS----ASVMS-LDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTA-------------- 416 (567)
Q Consensus 362 ~~~~~~~~~h~----~~V~~-l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~-------------- 416 (567)
.. +-...... ..+.+ ..+. + ..++ .++ .++.|+.+|.++++.+..+.....
T Consensus 142 ~~-~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ET-VWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CE-EEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CE-EEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 44 33322111 01111 1112 2 3444 443 379999999999999877654211
Q ss_pred ---------------------------EEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecCC
Q 008393 417 ---------------------------QMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGH 453 (567)
Q Consensus 417 ---------------------------~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h 453 (567)
.+.+.+..+.++++..+ +.|..+|.++++.+..+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 24567788888888765 38999999999999887653
Q ss_pred CC----------CeeEEEEc-CCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-------------CCc-----
Q 008393 454 TK----------PIDSVCWD-PSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNK----- 500 (567)
Q Consensus 454 ~~----------~V~~l~~s-p~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------------~~~----- 500 (567)
.. ++. +... .+| ..++.++.+ .++++|.++++ .+...... ..+
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccc
Confidence 21 121 2222 567 567777777 99999998874 33332211 001
Q ss_pred ---------------------eEEEEEeCCCCeEEEEE---------------------------------------cCC
Q 008393 501 ---------------------FHSCVFHPTYPSLLVIG---------------------------------------CYQ 520 (567)
Q Consensus 501 ---------------------i~~~~~sp~~~~l~~~~---------------------------------------~dg 520 (567)
...++++|+..++++.. ..|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 12346777666555531 346
Q ss_pred eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 521 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 521 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 89999999998772222222222212233567788889999998875
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-07 Score=85.57 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=135.8
Q ss_pred eeeeeecccC--ccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCceeEEeccCCC-cEEEEEEcCCCCeEEEEEeCC
Q 008393 320 KSKTNLEEHS--SLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGD 394 (567)
Q Consensus 320 ~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~li~s~~~d 394 (567)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+ ++.+..+.-... .-..+++. ++.++.....+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 444455 343 3466888986 5555666664 4899999998 565555542222 22344444 56777777789
Q ss_pred CcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-----CCeeEEEEcCCCCEE
Q 008393 395 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGELL 469 (567)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~l 469 (567)
+.+.+||..+.+.+..+........+.++++.++++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 999999999999999998665556666788888888889999999999998887776422 345667776 67666
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeec-------------CCCceEEEEEeCCCCeEEEEEcC
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+..... .|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 164 anvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 555445 9999999888 44444442 22357889999999888888765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-08 Score=102.19 Aligned_cols=232 Identities=15% Similarity=0.130 Sum_probs=162.1
Q ss_pred CCCeEEEEeC-CCcEEEEeCCCCeeeeeeccc-CccEEEEEE-C-CCCCeEEEEe------------------CCCcEEE
Q 008393 298 DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-SSLITDVRF-S-PSMPRLATSS------------------FDKTVRV 355 (567)
Q Consensus 298 dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~f-s-p~~~~l~s~s------------------~dg~I~i 355 (567)
||++|++... ++.|.+.|++++++...+.-. ...+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877665 457999999999988855432 345888888 5 9999999885 2457899
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-------------------------------------CcEE
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------------------------------GEIR 398 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-------------------------------------g~I~ 398 (567)
+|.++ .+.+..+.--. ....++++|+|+++++++... +.|.
T Consensus 180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99997 55555444212 346688999988887666432 2477
Q ss_pred EEECCC--Cee-eEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCe------------EEEEecCCCCCeeEE
Q 008393 399 YWSINN--GSC-TRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA------------CRLSLQGHTKPIDSV 460 (567)
Q Consensus 399 iwd~~~--~~~-~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~------------~~~~~~~h~~~V~~l 460 (567)
+.|..+ ++. +..+. .....+.++|++.+++++.. ++.|.++|+.+.+ .+..+.. ......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceE
Confidence 888887 444 44443 35678999999999888876 7899999999763 3444432 3456789
Q ss_pred EEcCCCCEEEEE-eCC-eEEEEeCCCC-------CCCceEEEeecCCCceEE-----EEEeCCCCeEEEEEcCC--eE--
Q 008393 461 CWDPSGELLASV-SED-SVRVWTVGSG-------SEGECVHELSCNGNKFHS-----CVFHPTYPSLLVIGCYQ--SL-- 522 (567)
Q Consensus 461 ~~sp~g~~l~s~-s~d-~I~iwd~~~~-------~~~~~i~~~~~~~~~i~~-----~~~sp~~~~l~~~~~dg--~I-- 522 (567)
+|+++| ++++. ..+ .|.+||+... +....+..+..+..+-.. +.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 55544 455 8999999761 123567777766543221 24589999999986532 33
Q ss_pred ---------EEEECCCCcEE
Q 008393 523 ---------ELWNMSENKTM 533 (567)
Q Consensus 523 ---------~iwd~~~~~~~ 533 (567)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766533
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.8e-07 Score=87.26 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-------------------ccCccEEEEEECCCCCeEEEEeCC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------------EHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-------------------~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
..+++|+++|++++++..++.|..|+..+++...... .....+..|++.++...|+++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 3478899999988888889999999987654432110 012357899999833456666555
Q ss_pred CcEEEEEcCCCCceeEEecc-----CCCcEEEEEEcC-CCCeEEEEEeC-----------------CCcEEEEECCCCee
Q 008393 351 KTVRVWDADNPGYSLRTFMG-----HSASVMSLDFHP-NKDDLICSCDG-----------------DGEIRYWSINNGSC 407 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~p-~~~~li~s~~~-----------------dg~I~iwd~~~~~~ 407 (567)
+.|.++|..+ +. +..+.. .......+++.+ +|. ++++... ++.|..||..+++.
T Consensus 101 ~~i~~~d~~~-g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 101 YHLSVVGSEG-GH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TEEEEECTTC-EE-CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCEEEEeCCC-CE-EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5588888764 22 222211 123578899999 875 4444322 36799999887765
Q ss_pred eEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCC---eEEEEecCCCCCeeEEEEcCCCCEEEEEeC-------
Q 008393 408 TRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE------- 474 (567)
Q Consensus 408 ~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~------- 474 (567)
..... .....++++++++.++++.. .+.|.+|++... ... .+....+ ...|+++++|+++++...
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 43322 34567899999887777654 689999998752 211 1111223 788999999997777654
Q ss_pred ---C-eEEEEeCCCCCCCceEEEeecCC----CceEEEEEeCCCCeEEEEE-cCCeEEEEECCCC
Q 008393 475 ---D-SVRVWTVGSGSEGECVHELSCNG----NKFHSCVFHPTYPSLLVIG-CYQSLELWNMSEN 530 (567)
Q Consensus 475 ---d-~I~iwd~~~~~~~~~i~~~~~~~----~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~ 530 (567)
. .|..+|.. + +.+..+.... ..+..+++ .++. |++++ ..+.|.++++...
T Consensus 256 ~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC---
T ss_pred CCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEecccc
Confidence 3 67777753 3 4444444332 34555665 3444 55544 5678888887644
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-06 Score=83.85 Aligned_cols=231 Identities=12% Similarity=0.043 Sum_probs=141.1
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-CC-c
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DG-E 396 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-dg-~ 396 (567)
.+.+..+... .....++|+++++++++-..++.|..||.+. . ....+ .....+..+++.+++. ++++... ++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~-~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-c-eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3444444332 4577899999998767766788999999875 3 22222 2345788999999987 4444433 22 4
Q ss_pred EEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeE-EEEec---------CCCCCeeEEE
Q 008393 397 IRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC-RLSLQ---------GHTKPIDSVC 461 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~-~~~~~---------~h~~~V~~l~ 461 (567)
|..+|..+++....... ....++..+ ++.++++. .++.|+++|..+++. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 77778888776543321 122334433 45555555 488999999886532 21111 111234555
Q ss_pred EcCCCCEEEEEeCC--eEEEEeCCC-CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE---e
Q 008393 462 WDPSGELLASVSED--SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT---L 535 (567)
Q Consensus 462 ~sp~g~~l~s~s~d--~I~iwd~~~-~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~---~ 535 (567)
++++++|+.+... .|.+|++.. +.. .....+.. ......++++++|+++++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 7888877766654 899999874 221 11111111 1334567999999865555567899999976 55432 2
Q ss_pred ccccCCeeEEEEe---cCCCEEEEEECC
Q 008393 536 TAHEGLIAALAVS---TETGYVASASHD 560 (567)
Q Consensus 536 ~~h~~~V~~l~~s---pdg~~l~s~s~D 560 (567)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2223568999998 888777666543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-06 Score=85.93 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=140.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--------------------CCCcEEEEEEcCCCCeEEEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--------------------HSASVMSLDFHPNKDDLICS 390 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--------------------h~~~V~~l~~~p~~~~li~s 390 (567)
...+++|.+++++++++..++.|..||..+... ..+.. ....+..|++.+++..++ .
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-I 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-E
Confidence 356788999998888888899999998875322 22210 113578999997334555 3
Q ss_pred EeCCCcEEEEECCCCeeeEEE---e----CCeeEEEEec-CCCEEEEEEC-----------------CCeEEEEECCCCe
Q 008393 391 CDGDGEIRYWSINNGSCTRVF---K----GGTAQMRFQP-HLGRYLAAAA-----------------ENVVSILDAETQA 445 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~~~~~---~----~~~~~~~~~~-~~~~l~~~~~-----------------dg~I~i~d~~~~~ 445 (567)
+...+.|..+|..++...... . .....+++.+ ++..+++-.. ++.|..||..+++
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 444555888987765432211 1 1246688888 7654444322 3679999988776
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-----
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----- 518 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~----- 518 (567)
....... ......|+|+++|++|+.+. .. .|.+|++....... ...+..... ...+++.++|+++++...
T Consensus 177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 5433221 23456799999999766664 44 89999987532111 111111223 778899999985555544
Q ss_pred -----CCeEEEEECCCCcEE-Eeccc----cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 519 -----YQSLELWNMSENKTM-TLTAH----EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 519 -----dg~I~iwd~~~~~~~-~~~~h----~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++...++.|.++
T Consensus 254 ~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp TTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred ccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 3678888875 4444 33322 245777776 456555555556667665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-06 Score=93.16 Aligned_cols=270 Identities=8% Similarity=-0.030 Sum_probs=173.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--------------ccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------------EHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--------------~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
...|.++....+|.+ ..|+..+-|.++|..+.+...... .....|.++....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 467999999988864 456665678889987665432111 2345799999988875 556666666
Q ss_pred EEEEEcCCCCceeEEec----------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eCCee
Q 008393 353 VRVWDADNPGYSLRTFM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTA 416 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~----------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~~~~ 416 (567)
|..|+...... ..+. -....|.++...+++..+ .|+.++-|.+||..++...... ...+.
T Consensus 335 l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPTF--HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW--IGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp EEEECSSCCSC--EEEC----CCCSSCCSSSCEEEEEECTTSCEE--EEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred EEEeCCCCCcc--eeeccCccccccCCCCCcceEEEEEcCCCCEE--EEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 88998875322 2221 123569999998876533 4666677999998765433211 12344
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~ 494 (567)
++....+ +.+.+++.++.|..||..+++...... .....|.++...++|.+.+. +.+.|.+||..++.. ..+...
T Consensus 411 ~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~~~~~~~~~~-~~~~~~ 487 (781)
T 3v9f_A 411 CSLKDSE-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAGVFVIDLASKKV-IHHYDT 487 (781)
T ss_dssp EEEECTT-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTEEEEEESSSSSC-CEEECT
T ss_pred EEEECCC-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCceEEEeCCCCeE-EecccC
Confidence 5555544 567778877889999998876543221 13467999999888876554 447899999876422 111111
Q ss_pred e---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc----ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 495 S---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. .....|.++...++|. |.+++.++.|..||..+++...+.. ....|.++...++|.+.++ +.+|.|..||
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 1 1135688888888887 6667765668889988776654432 2346889998888876654 4466546654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-07 Score=86.63 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=130.6
Q ss_pred ceeeeeeccCCCC--eEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCeeeeeecccCcc-EEEEEECCCCCeEEEEe-CC
Q 008393 277 FKEANSVRASTSK--VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSS-FD 350 (567)
Q Consensus 277 ~~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~dg--~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp~~~~l~s~s-~d 350 (567)
++.+.++ .|... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.... -..+++ ++..|+.+. .+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeC
Confidence 3455555 34433 4678998 677777777766 8999999999999888643321 123444 345555554 48
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------eeEEEEec
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRFQP 422 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--------~~~~~~~~ 422 (567)
+.+.+||..+ .+.+.++.... .-..+ ++++..++++- .++.|.++|..+.+.+..+.-. .+.+.|.
T Consensus 107 ~~v~v~D~~t-~~~~~ti~~~~-eG~gl--t~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRN-LRQVRSFNYDG-EGWGL--THNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTT-CCEEEEEECSS-CCCCE--EECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECcc-CcEEEEEECCC-CceEE--ecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 8999999998 66666665322 21233 35677777554 4788999999999888776531 2335565
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCeEEEEecCC------------CCCeeEEEEcCCCCEEEEEeCC
Q 008393 423 HLGRYLAAAA-ENVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 423 ~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h------------~~~V~~l~~sp~g~~l~s~s~d 475 (567)
++.+++... ++.|.+.|.++++.+..+... ....+.|||+|+++.|+..+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 456766664 789999999999998887642 1356889999999988888876
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-05 Score=78.66 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=142.6
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~i 355 (567)
+.+..+... ....+++|+++|+++++-..++.|..||.+.. ....+. .......+++.++++++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444332 45678999999997777767899999998753 333332 234688999999998665554332 4666
Q ss_pred EEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEEe---------C---CeeEEEEe
Q 008393 356 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---------G---GTAQMRFQ 421 (567)
Q Consensus 356 wd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~~---------~---~~~~~~~~ 421 (567)
+|..+ +....... ........++..+. ..++++...++.|+++|...+.. +.... . ....+ +
T Consensus 100 ~d~~~-g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 100 LVKSD-GTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EECTT-SCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EcCCC-CeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67665 33222111 12233455555544 44555555688999999876532 11110 0 12333 7
Q ss_pred cCCCEEEEEEC-CCeEEEEECCC-CeE--EEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 422 PHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 422 ~~~~~l~~~~~-dg~I~i~d~~~-~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
++++.++++.. .+.|..||+.. ++. ...+.. ......|+++++|+++++.... .|.+||.. +. ...+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeeccc
Confidence 88877777665 67999999874 321 111111 1345678999999877666655 89999974 31 111223333
Q ss_pred CCCceEEEEEe---CCCCeEEEEEcCC
Q 008393 497 NGNKFHSCVFH---PTYPSLLVIGCYQ 520 (567)
Q Consensus 497 ~~~~i~~~~~s---p~~~~l~~~~~dg 520 (567)
.....++++|. +++..|+++...+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34568899998 8888888877643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-05 Score=80.28 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=152.6
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCce
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS 364 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~ 364 (567)
+....+|.+..+++ +|+.+ ....|+..+++.......+.. ...+..++|++.+..|+.+. ..+.|..++++.. ..
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~ 107 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NV 107 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC
T ss_pred CCCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCC-Cc
Confidence 34445677776644 44444 345688888876555444443 34588999998766666554 5788999999863 32
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC-C-CeEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E-NVVSIL 439 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-d-g~I~i~ 439 (567)
...+.........+++.+.+..++++-...+.|.+.++........+.. ....+++.|.++.++.+.. . +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 2233323345678999887778887877788999999886554443432 4577899998888777765 3 789999
Q ss_pred ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 440 d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
++........+...-.....|+|++++..|+.+... .|..+|+.... ... .+.........+++. .+ .|+.+.
T Consensus 188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~--~~~~~~~~P~giav~-~~-~ly~td 262 (349)
T 3v64_C 188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKA--VISQGLPHPFAITVF-ED-SLYWTD 262 (349)
T ss_dssp ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE--EECSSCSSEEEEEEE-TT-EEEEEE
T ss_pred eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEE--EEeCCCCCceEEEEE-CC-EEEEec
Confidence 887643332222234457899999877777776654 89999986432 121 222233456677773 33 455554
Q ss_pred -cCCeEEEEECCCCc
Q 008393 518 -CYQSLELWNMSENK 531 (567)
Q Consensus 518 -~dg~I~iwd~~~~~ 531 (567)
..+.|..++..+++
T Consensus 263 ~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 263 WHTKSINSANKFTGK 277 (349)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEccCCC
Confidence 45688888855554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.3e-08 Score=104.57 Aligned_cols=262 Identities=10% Similarity=0.055 Sum_probs=152.9
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------cEEEEeCCCCeeee--eec-ccCccEEEEEECCCCCeEEEEeC-CCcEEE
Q 008393 292 CCHFSS-DGKLLATGGHDK-----------KAVLWHTDTLKSKT--NLE-EHSSLITDVRFSPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg-----------~I~vwd~~~~~~~~--~l~-~h~~~V~~i~fsp~~~~l~s~s~-dg~I~i 355 (567)
++++.+ +|++++.|+.+. .+.+||..+++... .+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 889999987643 58899998765432 222 23334456788889999999984 457999
Q ss_pred EEcCCCCceeEEecc-C-CCcEEEEEEcCCCCeEEEEEe-CC-----CcEEEEECCCCeeeEEEe-------CCeeEEEE
Q 008393 356 WDADNPGYSLRTFMG-H-SASVMSLDFHPNKDDLICSCD-GD-----GEIRYWSINNGSCTRVFK-------GGTAQMRF 420 (567)
Q Consensus 356 wd~~~~~~~~~~~~~-h-~~~V~~l~~~p~~~~li~s~~-~d-----g~I~iwd~~~~~~~~~~~-------~~~~~~~~ 420 (567)
||..+... ..+.. + ...-.++++.+++. +++.|+ .+ ..+.+||..+.+....-. .......+
T Consensus 270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEGGGTEE--EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred ecCcCCce--eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 99986322 21111 1 11123455566665 555666 34 579999999877544310 00000111
Q ss_pred ecCCCEEEEEEC---------CCeEEEEECCCCeEEEEecCCCC---------CeeEEEEc-CCCCEEEEEeCC------
Q 008393 421 QPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTK---------PIDSVCWD-PSGELLASVSED------ 475 (567)
Q Consensus 421 ~~~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~---------~V~~l~~s-p~g~~l~s~s~d------ 475 (567)
..++..++.++. ...+..||..+.........+.. .-.++.|. .+++++++|+.+
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 223333444443 34678899887754433322211 22344454 377888887731
Q ss_pred ------eEEEEeCCCCCCCceEEEe--ecC-CCceEEEEEeCCCCeEEEEEcC-----------CeEEEEECCCCcEEEe
Q 008393 476 ------SVRVWTVGSGSEGECVHEL--SCN-GNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTL 535 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~i~~~--~~~-~~~i~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~~~ 535 (567)
.|.+||..+. ...... ... .....++++.++++.+++|+.+ ..+.+||..+.+...+
T Consensus 427 ~~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp CCCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred cCCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 4677777654 221111 111 2223455677899988888754 4689999988765543
Q ss_pred cc---ccCCeeEEEEecCCCEEEEEEC
Q 008393 536 TA---HEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 536 ~~---h~~~V~~l~~spdg~~l~s~s~ 559 (567)
.. ......+..+.+++++++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 21 1222334556789999999985
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-05 Score=76.22 Aligned_cols=226 Identities=8% Similarity=-0.043 Sum_probs=145.0
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCC---CceeEEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNP---GYSLRTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 376 (567)
+|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+. ..+.|..++++.. ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 4678999998776655544 345578999998766665554 5688999998751 111222322334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECC--CeEEEEECCCCeEEEEec
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE--NVVSILDAETQACRLSLQ 451 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~ 451 (567)
.|++.+.+..++++-...+.|.++++........+. .....+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987777788777778999999988654443343 245778999988888877763 689999886543332223
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
..-.....|+|++++..|+.+... .|..+|+... ....+............+++. .+ .|+++. ..+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCC
Confidence 334567899999987777766654 8999998742 223332221223345677775 33 455554 45689999876
Q ss_pred CCc
Q 008393 529 ENK 531 (567)
Q Consensus 529 ~~~ 531 (567)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.5e-07 Score=97.84 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=155.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.|+.|..+|..+|+.+..+.... ..+.+ ..+. ++ .++++.. +|.|+.||..+ ++.+-.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADT-GKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTT-CCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCC-CcEEEE
Confidence 4578888889999999999999988776421 11111 0111 33 5555543 58999999998 444433
Q ss_pred ecc---CC----------------------------CcEEEEEEcCCCCeEEEEEeCCC-------------------cE
Q 008393 368 FMG---HS----------------------------ASVMSLDFHPNKDDLICSCDGDG-------------------EI 397 (567)
Q Consensus 368 ~~~---h~----------------------------~~V~~l~~~p~~~~li~s~~~dg-------------------~I 397 (567)
+.. .. .....+++.++.+ +++.+..++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 321 00 0112467877765 444666555 49
Q ss_pred EEEECCCCeeeEEEeCC------------eeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCC-------
Q 008393 398 RYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTK------- 455 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~------- 455 (567)
..+|.++++.+..+... .....+..++. .+++++.+|.++++|.++++.+..+.....
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 99999999998887642 11122233443 477778899999999999998854432110
Q ss_pred -----C------------------------eeEEEEcCCCCEEEEEe---------------------------------
Q 008393 456 -----P------------------------IDSVCWDPSGELLASVS--------------------------------- 473 (567)
Q Consensus 456 -----~------------------------V~~l~~sp~g~~l~s~s--------------------------------- 473 (567)
+ -..++++|+..+++...
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0 01267888776665421
Q ss_pred ---CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCC-eeEEEE
Q 008393 474 ---ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAV 547 (567)
Q Consensus 474 ---~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~ 547 (567)
.+ .|..||+.++ +.+....... ......+...+.++++++.++.|++||.++++.+ .+....+. -.-+.+
T Consensus 433 ~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQ---KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp GGGCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCccceEEEEeCCCC---cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 22 6889999887 4444444322 2333345567888999999999999999999987 33332221 123444
Q ss_pred ecCCC-EEEEE
Q 008393 548 STETG-YVASA 557 (567)
Q Consensus 548 spdg~-~l~s~ 557 (567)
..+|+ |++.+
T Consensus 509 ~~~G~~yva~~ 519 (668)
T 1kv9_A 509 ELAGRQYVAIM 519 (668)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEEE
Confidence 55676 44443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-06 Score=92.90 Aligned_cols=260 Identities=9% Similarity=0.025 Sum_probs=158.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCccE---------EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI---------TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V---------~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
..+++++.++.|..+|..+|+.+..+....... ..+++ .+..|++++.|+.|..+|..++ +.+-.+..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG-~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTG-KVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSC-CEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCC-CEEeeecC
Confidence 355555554459999999999988776432210 11222 3457888899999999999984 44333322
Q ss_pred CC----CcEE-EEEEcC---CCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCe---------------------
Q 008393 371 HS----ASVM-SLDFHP---NKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGT--------------------- 415 (567)
Q Consensus 371 h~----~~V~-~l~~~p---~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~--------------------- 415 (567)
.. ..+. ...+.. ++..+++.+. .++.|+.+|..+++.+.......
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 11 0111 111111 2232444544 37899999999999887654310
Q ss_pred -----------------------eEEEEecCCCEEEEEEC--------------------C----CeEEEEECCCCeEEE
Q 008393 416 -----------------------AQMRFQPHLGRYLAAAA--------------------E----NVVSILDAETQACRL 448 (567)
Q Consensus 416 -----------------------~~~~~~~~~~~l~~~~~--------------------d----g~I~i~d~~~~~~~~ 448 (567)
..+++.+..+.++++.. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 12456677788887774 2 589999999999998
Q ss_pred EecC--CC--------CCeeEEEEc-CCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-------------C-
Q 008393 449 SLQG--HT--------KPIDSVCWD-PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------N- 499 (567)
Q Consensus 449 ~~~~--h~--------~~V~~l~~s-p~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-------------~- 499 (567)
.+.. |. .++. +... .+|+ +|+.++.+ .++++|..+++ .+..+.... .
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCE
Confidence 8753 32 1221 1221 4674 77778888 99999998874 333222211 0
Q ss_pred -------------------c------------eEEEEEeCCCCeEEEEE-------------------------------
Q 008393 500 -------------------K------------FHSCVFHPTYPSLLVIG------------------------------- 517 (567)
Q Consensus 500 -------------------~------------i~~~~~sp~~~~l~~~~------------------------------- 517 (567)
. ...++++|+...+++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0 01346677666666543
Q ss_pred --cCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 518 --CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 518 --~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|.|+.||+.+++.+ ... +..++..-.+...+.+|+.++.||.|+.||
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2578999999999887 332 222332222233567888899999998875
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-06 Score=91.89 Aligned_cols=250 Identities=10% Similarity=0.048 Sum_probs=152.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~~~ 367 (567)
+..+++++.|+.|..+|..+++.+....... ..+.+ .... ++ .+++++. ++.|+.+|..+ ++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKT-GELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTT-CCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCC-CcEEEE
Confidence 4577888889999999999999987765321 01211 1111 33 5566554 78999999998 444333
Q ss_pred eccCCCc-------------------------------------E-EEEEEcCCCCeEEEEEeCC---------------
Q 008393 368 FMGHSAS-------------------------------------V-MSLDFHPNKDDLICSCDGD--------------- 394 (567)
Q Consensus 368 ~~~h~~~-------------------------------------V-~~l~~~p~~~~li~s~~~d--------------- 394 (567)
+...... + ..+++.+....++ .+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCccCCCcee
Confidence 3211100 0 1355666655444 44321
Q ss_pred -CcEEEEECCCCeeeEEEeCC---------e-eEEEE--ecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCC----
Q 008393 395 -GEIRYWSINNGSCTRVFKGG---------T-AQMRF--QPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT---- 454 (567)
Q Consensus 395 -g~I~iwd~~~~~~~~~~~~~---------~-~~~~~--~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---- 454 (567)
+.|..+|.++++.+..+... . ..+.+ ..++. .++++..+|.++++|.++++.+..+....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 35999999999998877532 1 11222 23443 35567778999999999999887765321
Q ss_pred ---------CCe--------------------------eEEEEcCCCCEEEEEe--------------------------
Q 008393 455 ---------KPI--------------------------DSVCWDPSGELLASVS-------------------------- 473 (567)
Q Consensus 455 ---------~~V--------------------------~~l~~sp~g~~l~s~s-------------------------- 473 (567)
.++ ..++++|+..+|+...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 2467888877776653
Q ss_pred -----------CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc-
Q 008393 474 -----------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE- 539 (567)
Q Consensus 474 -----------~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~- 539 (567)
.+ .|..||+.++ +.+..+.... .+....+...+..+++++.|+.|+.||.++++.+ .+....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccCccccCCCCCCeEEEEECCCC---CEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 23 7888888877 3444443322 2222233445667888999999999999999988 333221
Q ss_pred CCeeEEEEecCCCEEEE
Q 008393 540 GLIAALAVSTETGYVAS 556 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s 556 (567)
..-.-+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 11222445577765443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-05 Score=89.33 Aligned_cols=266 Identities=9% Similarity=0.038 Sum_probs=169.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|.++...++|.+.+. +.+ -|.+||..+++....... ....|.++....++. |..|+..+-|.++|..
T Consensus 210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 357999999998876654 444 689999877655432211 245699999888775 5556664458899987
Q ss_pred CCCceeEEe-------------ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe------------CC
Q 008393 360 NPGYSLRTF-------------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------GG 414 (567)
Q Consensus 360 ~~~~~~~~~-------------~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~------------~~ 414 (567)
+........ .-....|.+|....+|..+ .|+.++-|..|+........... ..
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW--IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE--EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE--EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 632111110 0134579999998887633 46667889999987665433211 12
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe---cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
+.++....+ +.+.+++.++.|.+||..++...... ......|.+++..++|.+.+ |+.+ .|..||..++ .
T Consensus 365 v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~----~ 438 (781)
T 3v9f_A 365 VSSVCDDGQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK----K 438 (781)
T ss_dssp EEEEEECTT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC----E
T ss_pred eEEEEEcCC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC----c
Confidence 445555554 56777887788999998776443211 12346789999888887665 5665 8999998654 2
Q ss_pred EEEee---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-c-----cCCeeEEEEecCCCEEEEEECCC
Q 008393 491 VHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-H-----EGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 491 i~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-h-----~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
+..+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+|
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence 22222 2345688888888776 666666 679999988776543321 1 35789999988887665443344
Q ss_pred cEEEc
Q 008393 562 FVKLW 566 (567)
Q Consensus 562 ~I~iW 566 (567)
|..|
T Consensus 517 -l~~~ 520 (781)
T 3v9f_A 517 -VGIY 520 (781)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 4444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-05 Score=80.68 Aligned_cols=235 Identities=10% Similarity=-0.002 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~ 367 (567)
...|.+..+++ +|+.+ ....|+.+++........+.. ...+..++|.+.+..|+.+ ...+.|..++++. ......
T Consensus 78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~ 153 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEV 153 (386)
T ss_dssp SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEEE
T ss_pred CCeECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEEE
Confidence 34466666643 44444 346788898876655444443 3458899999866666555 4577899999986 332233
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC-C-CeEEEEECC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E-NVVSILDAE 442 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-d-g~I~i~d~~ 442 (567)
+.........|++.+.+..++++-...+.|.+.++........+.. ....+++.|.++.++.+.. . +.|..+++.
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3333345577889887778887877788999999876554444432 4577899998888877765 3 689999987
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cC
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CY 519 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~d 519 (567)
...........-.....|+|++++..|+.+... .|..+|+.... .. ..+.........+++. .+ .|+.+. ..
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~--~~~~~~~~~P~giav~-~~-~ly~td~~~ 308 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RK--AVISQGLPHPFAITVF-ED-SLYWTDWHT 308 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CE--EEECSSCSSEEEEEEE-TT-EEEEEETTT
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eE--EEEECCCCCceEEEEE-CC-EEEEeeCCC
Confidence 654433333334557899999877777766654 89999986432 11 1222233456677773 33 455444 45
Q ss_pred CeEEEEECCCCcE
Q 008393 520 QSLELWNMSENKT 532 (567)
Q Consensus 520 g~I~iwd~~~~~~ 532 (567)
+.|..++..+++.
T Consensus 309 ~~V~~~~~~~G~~ 321 (386)
T 3v65_B 309 KSINSANKFTGKN 321 (386)
T ss_dssp TEEEEEETTTCCS
T ss_pred CeEEEEECCCCcc
Confidence 6899998655543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-06 Score=78.94 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=129.2
Q ss_pred cceeeeeeccCCC--CeEEEEEcCCCCeEEEEeCC--CcEEEEeCCCCeeeeeecccCcc-EEEEEECCCCCeEEE-EeC
Q 008393 276 SFKEANSVRASTS--KVICCHFSSDGKLLATGGHD--KKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLAT-SSF 349 (567)
Q Consensus 276 ~~~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~d--g~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp~~~~l~s-~s~ 349 (567)
.++.+.++ .|.. -+-.+.|+. +.++.+.+.+ ..|+++|+.+++.+..+.-.... -..+++. +..|+. .-.
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~ 83 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR 83 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee
Confidence 34455555 4543 355899986 5566666665 48999999999999887643321 1233443 344444 456
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEe
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQ 421 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~ 421 (567)
++.+.+||..+ ...+.++.... .-..++ +++..|+++- .++.|.++|..+.+.+..+.- ..+.+.+.
T Consensus 84 ~~~v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 84 NHEGFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSEEEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 88999999998 66677666432 223444 5677777664 588999999999988877653 22334444
Q ss_pred cCCCEEEEEE-CCCeEEEEECCCCeEEEEecCC-------------CCCeeEEEEcCCCCEEEEEeCC
Q 008393 422 PHLGRYLAAA-AENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 422 ~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h-------------~~~V~~l~~sp~g~~l~s~s~d 475 (567)
++.+++.. .++.|.+.|.++++.+..+... ....+.|+|+|+++.|+..+..
T Consensus 159 --~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 --NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 56677666 4789999999999998877521 1356889999988888887766
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-06 Score=81.75 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=121.1
Q ss_pred CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eCCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEe
Q 008393 373 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL 450 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~ 450 (567)
.....|.|+ ++.|+.+.+.+|.|+++|+++++.+..+ .......-+.+.++.++.... ++.+.+||..+.+.+.++
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 345788887 4678889999999999999999988776 222233334445666666654 789999999999999988
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--C---CceEEEEEeCCCCeEEEEE-cCCeEE
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--G---NKFHSCVFHPTYPSLLVIG-CYQSLE 523 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~--~---~~i~~~~~sp~~~~l~~~~-~dg~I~ 523 (567)
.... .-..++ ++++.|+.+..+ .|.++|..+.+ .+..+... . ..++.+.|. +|. |++.. ..+.|.
T Consensus 133 ~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEE
Confidence 7532 224555 456767666645 99999998874 34333322 1 234566666 664 66655 467999
Q ss_pred EEECCCCcEEEecc--------------ccCCeeEEEEecCCCEEEEEE
Q 008393 524 LWNMSENKTMTLTA--------------HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 524 iwd~~~~~~~~~~~--------------h~~~V~~l~~spdg~~l~s~s 558 (567)
+.|..+++...... -....+.|+|+|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999998772211 113578999999876666555
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.8e-06 Score=90.00 Aligned_cols=251 Identities=12% Similarity=0.079 Sum_probs=150.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCc----cEE-E-EEECC--CCC-eEEEEe------CCCcEEEEEcCCCCc
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----LIT-D-VRFSP--SMP-RLATSS------FDKTVRVWDADNPGY 363 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~----~V~-~-i~fsp--~~~-~l~s~s------~dg~I~iwd~~~~~~ 363 (567)
+..+++++.|+.|..+|.++|+.+........ .+. . +.... +++ .|++++ .++.|+.+|..++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~- 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE- 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC-
Confidence 45777888899999999999999877653221 111 1 11111 233 555654 37889999998844
Q ss_pred eeEEeccCCCcE-----------------------------------------EEEEEcCCCCeEEEEEe----------
Q 008393 364 SLRTFMGHSASV-----------------------------------------MSLDFHPNKDDLICSCD---------- 392 (567)
Q Consensus 364 ~~~~~~~h~~~V-----------------------------------------~~l~~~p~~~~li~s~~---------- 392 (567)
.+-........+ ..+++.+....+++..+
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 332222110000 12456666555553332
Q ss_pred --C-------C----CcEEEEECCCCeeeEEEeCC----------eeEEEEe---cCCC---EEEEEECCCeEEEEECCC
Q 008393 393 --G-------D----GEIRYWSINNGSCTRVFKGG----------TAQMRFQ---PHLG---RYLAAAAENVVSILDAET 443 (567)
Q Consensus 393 --~-------d----g~I~iwd~~~~~~~~~~~~~----------~~~~~~~---~~~~---~l~~~~~dg~I~i~d~~~ 443 (567)
. | +.|..+|..+++.+..+... ...+.+. .++. .++.++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 68999999999999887531 1122222 3453 566777899999999999
Q ss_pred CeEEEEecCCCC-------------C--------------------------------eeEEEEcCCCCEEEEEe-----
Q 008393 444 QACRLSLQGHTK-------------P--------------------------------IDSVCWDPSGELLASVS----- 473 (567)
Q Consensus 444 ~~~~~~~~~h~~-------------~--------------------------------V~~l~~sp~g~~l~s~s----- 473 (567)
++.+..+..... + -..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998877654320 0 01346677655555432
Q ss_pred ----------------------------CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 474 ----------------------------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 474 ----------------------------~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
.+ .|..||+.++ +.+....... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 13 6888898877 3443333221 2211122335677888999999999
Q ss_pred EECCCCcEE-EeccccCCe-eEEEEecCCCEE
Q 008393 525 WNMSENKTM-TLTAHEGLI-AALAVSTETGYV 554 (567)
Q Consensus 525 wd~~~~~~~-~~~~h~~~V-~~l~~spdg~~l 554 (567)
||.++++.+ .+....+.+ .-+.|..+|+.+
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 999999988 443322221 236666788743
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-06 Score=88.98 Aligned_cols=248 Identities=11% Similarity=0.066 Sum_probs=148.3
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEe------CCCcEEEEEcCCCCceeEEecc
Q 008393 302 LATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 302 lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
|++++.|+.|..+|..+|+.+....... ..+.+ ..+. ++ .|++++ .+|.|+.+|..++....+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999987765322 01211 1111 34 555554 3899999999984433332221
Q ss_pred CCC------------------------------------cE-EEEEEcCCCCeEEEEEeCC----------------CcE
Q 008393 371 HSA------------------------------------SV-MSLDFHPNKDDLICSCDGD----------------GEI 397 (567)
Q Consensus 371 h~~------------------------------------~V-~~l~~~p~~~~li~s~~~d----------------g~I 397 (567)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 00 1345666655444 55444 489
Q ss_pred EEEECCCCeeeEEEeCCe----------eEEEEe---cCC---CEEEEEECCCeEEEEECCCCeEEEEecCCC-------
Q 008393 398 RYWSINNGSCTRVFKGGT----------AQMRFQ---PHL---GRYLAAAAENVVSILDAETQACRLSLQGHT------- 454 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~----------~~~~~~---~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------- 454 (567)
..+|.++++.+..+.... ..+.+. .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999988776421 112222 345 245557789999999999999887664211
Q ss_pred ------CCe--------------------------eEEEEcCCCCEEEEEe-----------------------------
Q 008393 455 ------KPI--------------------------DSVCWDPSGELLASVS----------------------------- 473 (567)
Q Consensus 455 ------~~V--------------------------~~l~~sp~g~~l~s~s----------------------------- 473 (567)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 011 2456777766665532
Q ss_pred ----------CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccC-
Q 008393 474 ----------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG- 540 (567)
Q Consensus 474 ----------~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~- 540 (567)
.. .|..||+.++ +.+...... .+...-.+...+..+++++.|+.|+.||.++++.+ .+....+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 22 6777777776 333333221 11111123345677888999999999999999988 3332222
Q ss_pred CeeEEEEecCCCE-EEE
Q 008393 541 LIAALAVSTETGY-VAS 556 (567)
Q Consensus 541 ~V~~l~~spdg~~-l~s 556 (567)
...-+.|..+|+. |++
T Consensus 517 ~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp CSCCEEEEETTEEEEEE
T ss_pred EeccEEEEeCCEEEEEE
Confidence 2223556667764 443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.64 E-value=9.9e-05 Score=75.20 Aligned_cols=226 Identities=8% Similarity=-0.050 Sum_probs=148.5
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCC---ceeEEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG---YSLRTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 376 (567)
+|+.+. ...|+..+++.......+. ....+..|+|++.+..|+.+. ..+.|+.++++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 5789999988665544443 455688999998766666554 56789999987521 12233333456688
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEec
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 451 (567)
.|++.+.+..|+++-...+.|.+.++........+.. ....+++.|.++.++.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 9999987777887877788999999987665555443 3577899998888887764 3789999987654443344
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
..-.....|++++++..|+.+... .|..+|+... ....+............+++ ++..|+... ..+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence 344567899999988877777654 8999998643 22223222122234456666 334455554 44688888866
Q ss_pred CCc
Q 008393 529 ENK 531 (567)
Q Consensus 529 ~~~ 531 (567)
+++
T Consensus 320 ~G~ 322 (400)
T 3p5b_L 320 TGS 322 (400)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-06 Score=94.95 Aligned_cols=242 Identities=9% Similarity=0.066 Sum_probs=136.0
Q ss_pred cCCC-CeEEEEEc-CCCCeEEEEeC-CC----cEEEEeCCCC-eeee-eecccCccEEEEEECCCCCeEEEEeCC-----
Q 008393 285 ASTS-KVICCHFS-SDGKLLATGGH-DK----KAVLWHTDTL-KSKT-NLEEHSSLITDVRFSPSMPRLATSSFD----- 350 (567)
Q Consensus 285 ~h~~-~V~~l~~s-~dg~~lasg~~-dg----~I~vwd~~~~-~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~d----- 350 (567)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....+.|+||++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 3443 67789999 99999886543 22 5999999998 6321 121 123468899999988877665
Q ss_pred CcEEEEEcCCCCce-eEEec-cCCCcEEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCe-ee--EEEeCCeeEEEEecC
Q 008393 351 KTVRVWDADNPGYS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGS-CT--RVFKGGTAQMRFQPH 423 (567)
Q Consensus 351 g~I~iwd~~~~~~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~~~--dg~I~iwd~~~~~-~~--~~~~~~~~~~~~~~~ 423 (567)
..|+++++.+.... ...+. ........+.|+|+|+.|+++... ...|+++|+.++. .. ..+........++++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 25888888763221 22222 233456788999999988877643 3468889998752 12 333221111223333
Q ss_pred ---CCEEEEEECC-----CeEEEEECCCCeEEEE-ecCCCC--CeeEEEEcCCCCEEEEEeCC---eEEEEeC-------
Q 008393 424 ---LGRYLAAAAE-----NVVSILDAETQACRLS-LQGHTK--PIDSVCWDPSGELLASVSED---SVRVWTV------- 482 (567)
Q Consensus 424 ---~~~l~~~~~d-----g~I~i~d~~~~~~~~~-~~~h~~--~V~~l~~sp~g~~l~s~s~d---~I~iwd~------- 482 (567)
++.++..+.. ..|..+|+.+...... +..+.. .+..+.+. .+.++++...+ .|.++++
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVF 405 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccc
Confidence 6777666553 3788888875211112 222333 34555554 23344455544 4777776
Q ss_pred CCCCCCceEEEeecCC-CceEEEEE----eCCCCeEE-EEEcC---CeEEEEECCCCcEE
Q 008393 483 GSGSEGECVHELSCNG-NKFHSCVF----HPTYPSLL-VIGCY---QSLELWNMSENKTM 533 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~-~~i~~~~~----sp~~~~l~-~~~~d---g~I~iwd~~~~~~~ 533 (567)
..+. .+..+.... ..+..+.+ ++++..++ +.+.. ..++.+|+.+++..
T Consensus 406 ~~g~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 406 KAGT---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp CTTT---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred cCCc---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 2221 022222111 12223322 34655444 33333 37888898877644
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.8e-05 Score=70.02 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=134.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+.+.+-.+.+..++|+|+++.| ++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4566666789999999986655 557778899999998 888877642 2245788899988877677667788999998
Q ss_pred CCCCc--eeEEec------cCCCcEEEEEEcCCCCeEEEEEeCCC-cEEEEEC-CCCeeeEEEe----------CCeeEE
Q 008393 359 DNPGY--SLRTFM------GHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSI-NNGSCTRVFK----------GGTAQM 418 (567)
Q Consensus 359 ~~~~~--~~~~~~------~h~~~V~~l~~~p~~~~li~s~~~dg-~I~iwd~-~~~~~~~~~~----------~~~~~~ 418 (567)
..... .+.... ........|+|.|.++.++++.-.+. .|+.|+- .....+..+. .....+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76443 122221 23455789999999888886665554 4555551 1111222221 246789
Q ss_pred EEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 419 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 419 ~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
+++|..+.+++.+. ...|.++|.... .+..+.-.. ..-..|+|+++|++.++ ++. .+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999998888777 568888987654 444433221 25678999999986655 555 6666653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-05 Score=82.55 Aligned_cols=231 Identities=10% Similarity=0.074 Sum_probs=136.8
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC----cEEEEECCCC
Q 008393 331 LITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNG 405 (567)
Q Consensus 331 ~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg----~I~iwd~~~~ 405 (567)
....|+|+| ++..|+++...+.|+.+|++. +. +..+.........|+|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT-TE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC-CE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 456677776657899999875 33 3444445567889999999887776665333 2333443 23
Q ss_pred eee--EEE--eCCeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCCCCEEEEEeCC--eE
Q 008393 406 SCT--RVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED--SV 477 (567)
Q Consensus 406 ~~~--~~~--~~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d--~I 477 (567)
... ..+ ..+...++++|+.+.++++. .++.|..||..++....... +.......|+|+|+|++|+.+... .|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 221 222 23456788999556666655 47899999998776522222 122456789999999966666544 89
Q ss_pred EEEeCCCCC-CCceEEEeecC---------------CCceE-EEEEe--------CCCCeEEEE-EcCCeEEEEECCCCc
Q 008393 478 RVWTVGSGS-EGECVHELSCN---------------GNKFH-SCVFH--------PTYPSLLVI-GCYQSLELWNMSENK 531 (567)
Q Consensus 478 ~iwd~~~~~-~~~~i~~~~~~---------------~~~i~-~~~~s--------p~~~~l~~~-~~dg~I~iwd~~~~~ 531 (567)
..++..... ....+..+.+. -.... .+++. +++. |+++ ...+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 888765321 00011112111 01122 44553 3344 4444 4456899998 4555
Q ss_pred EEEeccc------------------cCCeeEEEEecC-CCEEEEEECCCcEEEc
Q 008393 532 TMTLTAH------------------EGLIAALAVSTE-TGYVASASHDKFVKLW 566 (567)
Q Consensus 532 ~~~~~~h------------------~~~V~~l~~spd-g~~l~s~s~Dg~I~iW 566 (567)
...+.+. -.....|+++++ +.++++-...+.|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5444322 125789999995 5444444445667654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.59 E-value=7.7e-05 Score=73.41 Aligned_cols=219 Identities=9% Similarity=-0.028 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCe-eeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 308 DKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 308 dg~I~vwd~~~~~-~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
...|+.++++... ....+......+..++|.+.+..|+.+ ...+.|..++++........+...-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 5678889887653 122222223357789999865555544 45678999998864221222222234567889988777
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCeeEE
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 460 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V~~l 460 (567)
.++++-...+.|.++++........+.. ....+++.|.++.++.+.. .+.|..+++........+...-...+.|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 7887777788999999876543333322 3577889998888888774 5789999887543322233333456899
Q ss_pred EEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCc
Q 008393 461 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENK 531 (567)
Q Consensus 461 ~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~ 531 (567)
+|++++..|+.+... .|..+|+... ....+. .........+++.. ..++... ..+.|..++..+++
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEe--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 999977777776654 8999998643 222222 22334456677753 3455444 45689999986665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00026 Score=69.50 Aligned_cols=216 Identities=12% Similarity=0.007 Sum_probs=137.1
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC----CeeeEEEe---CCe
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFK---GGT 415 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~----~~~~~~~~---~~~ 415 (567)
+|+.+.. ..|+..|+++. .....+. ....+..++|++.+..++++-..++.|..+++.. ......+. ...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECB-SSEEEEETTSC-CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECC-CeEEEEECCCc-ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3444443 45899999873 3333333 4566889999998788887877789999999886 22222333 245
Q ss_pred eEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---DSVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d~I~iwd~~~~~~~~~i 491 (567)
..+++.+.++.++++. ..+.|.++|+........+.........++++|.+..|+.+.. ..|..+++... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----~~ 155 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----DI 155 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----CE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----Ce
Confidence 6788988777776665 4789999999866544344434456789999996665555543 26888877532 12
Q ss_pred EEe-ecCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEec---cccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 492 HEL-SCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLT---AHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 492 ~~~-~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+ ...-.....+++++++..|+++... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 222 2234567889999988888877654 59999999865443332 123456778875 34444444445556543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-05 Score=72.71 Aligned_cols=198 Identities=11% Similarity=0.135 Sum_probs=128.5
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
.+.+-...+..|+|+|+++.|+++...++.|...|.. ++.++.+. .....+++.+++..+++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4456667899999999988898888889999999998 88877764 256778888776544443346789999876
Q ss_pred CCe---EEEEec------CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-------cCCCceEEEE
Q 008393 443 TQA---CRLSLQ------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------CNGNKFHSCV 505 (567)
Q Consensus 443 ~~~---~~~~~~------~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-------~~~~~i~~~~ 505 (567)
... .+.... ........|+|+|.++.|+++.+. ...||.+........+..+. ..-..+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 123456899999998777776655 44555543110101111111 1233578899
Q ss_pred EeCCCCeEEEEEcC-CeEEEEECCCCcEE--Eec-cc------cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 506 FHPTYPSLLVIGCY-QSLELWNMSENKTM--TLT-AH------EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 506 ~sp~~~~l~~~~~d-g~I~iwd~~~~~~~--~~~-~h------~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++|....|++.+.. ..|.++|....... .+. +. -.....|+|.++|+++++ ++-+.+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987777666655 58899998755222 222 11 125678999999986655 666655544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00019 Score=71.69 Aligned_cols=224 Identities=9% Similarity=0.042 Sum_probs=141.7
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 334 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
|.+..+ ..+|+.+. ...|+..+++. ... ..+......+..++|++.+..++++-...+.|..+++........+..
T Consensus 38 C~~~~~-~~~ll~~~-~~~I~~i~~~g-~~~-~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 38 CKALGP-EPVLLFAN-RIDIRQVLPHR-SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp EEESSS-CCEEEEEC-BSCEEEECTTS-CCE-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccccc-CceeEeec-ccceEEEeCCC-Cee-EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 444444 23444443 34488888875 332 333333455889999988788887777788999999987765444432
Q ss_pred ---CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCC
Q 008393 414 ---GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGS 486 (567)
Q Consensus 414 ---~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~ 486 (567)
....+++.+.++.++.+.. .+.|.++++........+...-.....|+++|.+..|+....+ .|..+++....
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 3467889987777776665 6799999988664443444444567899999966666655533 68888775421
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEE-eccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
... .+.........+++++++..|+.+.. .+.|+.+|+....... +.........|++. ++.++++-...+.|.
T Consensus 194 -~~~--~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 194 -RRI--IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 269 (349)
T ss_dssp -CEE--SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred -cEE--EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEE
Confidence 111 11223445788999998888887765 4689999988654433 33334566778873 343444433345454
Q ss_pred E
Q 008393 565 L 565 (567)
Q Consensus 565 i 565 (567)
.
T Consensus 270 ~ 270 (349)
T 3v64_C 270 S 270 (349)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-05 Score=74.91 Aligned_cols=216 Identities=9% Similarity=0.018 Sum_probs=140.3
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 419 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~ 419 (567)
+|+.+. ...|+.++++.. .. ..+......+..++|++.+..++++-...+.|..+++........+.. ....++
T Consensus 89 ~l~~~~-~~~I~~i~~~~~-~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRS-EY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp EEEEEC-BSCEEEECTTSC-CC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred eeEeec-CccceeeccCCC-cE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 444443 355888888763 22 233334456889999988788887777788999999987765544443 345688
Q ss_pred EecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEee
Q 008393 420 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 420 ~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~ 495 (567)
+.+.++.++.+.. .+.|.++++........+.........|+++|.+..|+....+ .|..+++... . ......
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~--~~~~~~ 242 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-G--RRIIAD 242 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S--CEEEEC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-C--cEEEEE
Confidence 8887777776665 6789999987654443444444567899999977766665533 6777777543 1 111222
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
..-.....++|++++..|+++... +.|+.+|+...... .+.........|++. .+.++++-...+.|..
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence 234457889999988878877654 68999998765443 333334566788873 4444444444555544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00055 Score=67.52 Aligned_cols=263 Identities=11% Similarity=0.054 Sum_probs=147.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec----ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~----~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
...+.+|.|..++..+++ +..|.| +...+.++.-..+. .....+.+|.|.+ + .++.++.++.|.. ....+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE--ECCCC
Confidence 457999999988887775 456765 33344343222221 2345688999986 3 3444556664433 33324
Q ss_pred ceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEEEEecCCCEEEEEECCCe
Q 008393 363 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 363 ~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
....... .+...+..|.+.+++ .+++.+ .++.|.. ....++.-... ......+.+.+++. +++.+.++.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEECCCc
Confidence 4333332 234567888877664 455444 4565432 22223322222 22456677888754 455555565
Q ss_pred EEEE-EC--CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeec----CCCceEEEEEeC
Q 008393 436 VSIL-DA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC----NGNKFHSCVFHP 508 (567)
Q Consensus 436 I~i~-d~--~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~----~~~~i~~~~~sp 508 (567)
+..- |. .+.+.+. ......+..+.+.+++.+++.+..+.+++++...+ .....+.. ....+..+++.+
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence 5544 42 3444442 23456788999999988776654447766642212 11111111 123578888988
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEEE-ec---cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~~-~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++. +++++.++.| ++....++... +. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 766 5555567777 44555555443 22 234578899997655 466677888877553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00025 Score=78.31 Aligned_cols=237 Identities=9% Similarity=-0.044 Sum_probs=151.5
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCC---cee
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG---YSL 365 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~---~~~ 365 (567)
-.|.++.+.. +|+.+ ....|+..++........+. ....+..|+|.+....|+.+ ...+.|+.++++... ...
T Consensus 387 ~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~ 463 (791)
T 3m0c_C 387 KACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 463 (791)
T ss_dssp CCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred ceeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee
Confidence 3454443332 44433 35678888887655444333 44567899999866555554 456789999987521 222
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC--CeEEEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE--NVVSILD 440 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d--g~I~i~d 440 (567)
..+.........|++.+.+..|+++-...+.|.+.++........+.. ....|++.|..+.|+.+... +.|...+
T Consensus 464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 333334456778999988888888888889999999986655444432 36789999998888887752 6899999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
+........+...-.....|++++.+..|+.+... .|..+++... ....+......-.....+++ .+.+|+++..
T Consensus 544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav--~~~~lYwtD~ 620 (791)
T 3m0c_C 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDI 620 (791)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEE--ETTEEEEEET
T ss_pred cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEE--eCCEEEEEEC
Confidence 98765554454444678899999877777777655 8999998643 22222211111223445555 3446666654
Q ss_pred -CCeEEEEECCCCcE
Q 008393 519 -YQSLELWNMSENKT 532 (567)
Q Consensus 519 -dg~I~iwd~~~~~~ 532 (567)
.+.|...|..+++.
T Consensus 621 ~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 621 INEAIFSANRLTGSD 635 (791)
T ss_dssp TTTEEEEEETTTCCC
T ss_pred CCCEEEEEeCCCCcc
Confidence 46888888766643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-05 Score=77.72 Aligned_cols=233 Identities=10% Similarity=0.095 Sum_probs=140.3
Q ss_pred CeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-C----cEEEEEcCCCC
Q 008393 289 KVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K----TVRVWDADNPG 362 (567)
Q Consensus 289 ~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-g----~I~iwd~~~~~ 362 (567)
....++|+| ++..|+++...+.|+++|++++....... .......|+|++++++|+++... + .+.+++.+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 346899998 45566666555889999998766554443 45568899999999977666652 2 24444443211
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEEC-CCeEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAA-ENVVS 437 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-dg~I~ 437 (567)
.....+. .......++++|++..++++-..++.|..|+...+.....+.. ....++|+|++++++++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 1234567889995556776776788999999987765333322 3567999999996666654 67899
Q ss_pred EEECCC--CeE--EEEecCC---C------------CCee-EEEEc--------CCCCEEEEEeCC-eEEEEeCCCCCCC
Q 008393 438 ILDAET--QAC--RLSLQGH---T------------KPID-SVCWD--------PSGELLASVSED-SVRVWTVGSGSEG 488 (567)
Q Consensus 438 i~d~~~--~~~--~~~~~~h---~------------~~V~-~l~~s--------p~g~~l~s~s~d-~I~iwd~~~~~~~ 488 (567)
.++... ++. +..+.+. . .... .+++. ++|.++++-... .|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 877653 221 1122111 0 1122 45553 345555554444 8888883 23
Q ss_pred ceEEEeecC------------------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 489 ECVHELSCN------------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 489 ~~i~~~~~~------------------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
.+..+.+. -.....+++++++..|+++. .++.|+.++++
T Consensus 372 -~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 -RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22222221 12467889999644555554 44578877754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00039 Score=70.75 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=139.4
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeEEEe---CCe
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFK---GGT 415 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~----~~~~~~~---~~~ 415 (567)
+|+.+. ...|+..+++.... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. ...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444444 35688888886322 2333455678999999987888877777889999998762 2333333 245
Q ss_pred eEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i 491 (567)
..+++.+.++.|+.+.. .+.|.+++++.......+...-.....|+++|.+.+|+.... . .|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 67889887777776665 679999999877655555444456789999997666665542 2 78888886431 11
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEEecc---ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTLTA---HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+...-.....+++++++..|+++.. .+.|+.+|+.......+.. ......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 122223356788999998888888865 4689999998665443322 23445677763 33344444444556543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00024 Score=69.87 Aligned_cols=218 Identities=9% Similarity=0.007 Sum_probs=136.8
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEe---CCeeEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGTAQM 418 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~---~~~~~~ 418 (567)
+|+.+. ...|+.++++...............+..++|++.+..++++-...+.|..+++...... ..+. .....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 45699999987431222222223457789999877778877777889999999876421 2222 245678
Q ss_pred EEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceEEEe
Q 008393 419 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 ~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i~~~ 494 (567)
++.+.++.++.+.. .+.|.++++........+.........|+++|.+.+|+.+.. . .|..+++... ....+ +
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~--~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFII--I 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEE--E
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEE--E
Confidence 89987777776654 679999998765433333344456789999987666665552 3 7888887532 11111 2
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEEe-ccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
...-.....+++++++..|+.+.. .+.|+.+|+.......+ .........+++.. +.++++-...+.|..
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 223345688999998888887765 46899999976544433 22345567777753 334444333455544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.4e-05 Score=76.94 Aligned_cols=232 Identities=10% Similarity=0.032 Sum_probs=138.7
Q ss_pred CeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC-----cEEEEEcCCC
Q 008393 289 KVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNP 361 (567)
Q Consensus 289 ~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg-----~I~iwd~~~~ 361 (567)
...+++|+++ +..|+.+...+.|+.+|..+++....+. .......|+|+++++ |+.+...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3458999985 4455555444899999998877665443 455689999999999 55554321 1333333221
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEeC----CeeEEEEecCCCEEEEEEC-CCe
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG----GTAQMRFQPHLGRYLAAAA-ENV 435 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~-dg~ 435 (567)
......+. .......+++++++..++++-..++.|+.+|..++... ..+.. ....++++|+++.++++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11011121 23445678899954556656666788999999877662 22222 1235999999997766665 679
Q ss_pred EEEEECC--CCeE--EEEecCC---------------CCCeeEEEE---------cCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 436 VSILDAE--TQAC--RLSLQGH---------------TKPIDSVCW---------DPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 436 I~i~d~~--~~~~--~~~~~~h---------------~~~V~~l~~---------sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
|..++.. ++.. ...+.+. -.....+++ ..+|.++++-... .|+.++. .+
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 3321 1122111 123567999 7777776666666 8999985 22
Q ss_pred CCceEEEeecC------------------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 487 EGECVHELSCN------------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 487 ~~~~i~~~~~~------------------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
.+..+.+. -.....++++|....|+++. .++.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 23333221 12356788884333344444 45677777654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00014 Score=74.77 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=136.8
Q ss_pred cEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC---C-cEEEEECCC
Q 008393 331 LITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---G-EIRYWSINN 404 (567)
Q Consensus 331 ~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d---g-~I~iwd~~~ 404 (567)
....|+|+|+ ...|+.+...+.|+.+|..+ +. +..+.........|+|+++++ ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g~-v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-QY-VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-TE-EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC-CE-EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 3568899984 45666665558899999975 33 344444556789999999988 66554321 1 233333322
Q ss_pred Cee-eEEE--eCCeeEEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEe-cC-CCCCeeEEEEcCCCCEEEEEeCC--e
Q 008393 405 GSC-TRVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSL-QG-HTKPIDSVCWDPSGELLASVSED--S 476 (567)
Q Consensus 405 ~~~-~~~~--~~~~~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~-~~-h~~~V~~l~~sp~g~~l~s~s~d--~ 476 (567)
+.. ...+ -.....+++.+..+.++++. .++.|+.+|..++.....+ .. ....-..|+|+|+|++|+.+... .
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 211 0111 13345678899556666555 4678999999877652222 21 22233479999999966666654 8
Q ss_pred EEEEeCCCC-CCCceEEEeecC---------------CCceEEEEE---------eCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 477 VRVWTVGSG-SEGECVHELSCN---------------GNKFHSCVF---------HPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 477 I~iwd~~~~-~~~~~i~~~~~~---------------~~~i~~~~~---------sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
|+.+++... ........+.+. -.....+++ ..++.++++-...+.|+.++. ++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 999887521 111111112111 123566888 666665554455678999985 555
Q ss_pred EEEeccc------------------cCCeeEEEEe-cCCCEEEEEECCCcEEEc
Q 008393 532 TMTLTAH------------------EGLIAALAVS-TETGYVASASHDKFVKLW 566 (567)
Q Consensus 532 ~~~~~~h------------------~~~V~~l~~s-pdg~~l~s~s~Dg~I~iW 566 (567)
...+.+. -.....|+++ +++.++++=...+.|+.+
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 5444322 1236789999 566555554456677654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-05 Score=86.40 Aligned_cols=190 Identities=14% Similarity=0.154 Sum_probs=118.0
Q ss_pred cEEEEEEc-CCCCeEEEEEeCCC----cEEEEECCCC-eeeE-EEeCCeeEEEEecCCCEEEEEECC-----CeEEEEEC
Q 008393 374 SVMSLDFH-PNKDDLICSCDGDG----EIRYWSINNG-SCTR-VFKGGTAQMRFQPHLGRYLAAAAE-----NVVSILDA 441 (567)
Q Consensus 374 ~V~~l~~~-p~~~~li~s~~~dg----~I~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~d-----g~I~i~d~ 441 (567)
.+...+|+ |||+.++++.+.+| .|+++|+.++ +.+. .+......+.|+|++..|+....+ ..|+++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 57789999 99998887776554 4999999998 6322 122234567899999888887765 36888998
Q ss_pred CCCe--EEEEec-CCCCCeeEEEEcCCCCEEEEEe---CC-eEEEEeCCCCCCCce-EEEe-ecCCCceEEEEEeCCCCe
Q 008393 442 ETQA--CRLSLQ-GHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGEC-VHEL-SCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 442 ~~~~--~~~~~~-~h~~~V~~l~~sp~g~~l~s~s---~d-~I~iwd~~~~~~~~~-i~~~-~~~~~~i~~~~~sp~~~~ 512 (567)
.++. ....+. ........+.|+|||++|+..+ .. .|+++|+.++.. .. +..+ .........+.|+. +..
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSH 332 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCE
Confidence 8763 222332 2334567889999999888765 23 689999976521 11 1222 22334445555444 555
Q ss_pred EEEEEcC-----CeEEEEECCC-CcEEE-eccccC--CeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 513 LLVIGCY-----QSLELWNMSE-NKTMT-LTAHEG--LIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 513 l~~~~~d-----g~I~iwd~~~-~~~~~-~~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|+..+.. ..|+.+|+.+ +.... +..+.. .+..+.+. .+.++++...||..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 5555433 2788888875 33233 344443 34455554 23455666677766654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00013 Score=71.41 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=123.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC----CC---eEEEEeC---CCcEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS----MP---RLATSSF---DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~----~~---~l~s~s~---dg~I~iwd~~~~~~~~~~ 367 (567)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++... +++|.+|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3345565667789999999 8898888864 45666666553 22 2333333 578999988532333444
Q ss_pred ecc------CC-CcEEEEEE--cCC-CCeEEEEEeCCCcEEEEECC-------CCeeeEEEe--CCeeEEEEecCCCEEE
Q 008393 368 FMG------HS-ASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN-------NGSCTRVFK--GGTAQMRFQPHLGRYL 428 (567)
Q Consensus 368 ~~~------h~-~~V~~l~~--~p~-~~~li~s~~~dg~I~iwd~~-------~~~~~~~~~--~~~~~~~~~~~~~~l~ 428 (567)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.|. +....+.+.+..+.++
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 422 11 56677888 664 44456678889999999983 335566665 3567788889999999
Q ss_pred EEECCCeEEEEECC-----CCeEEEEec-CC-CCCeeEEEEc--CCCC-EEEEEeCC--eEEEEeCC
Q 008393 429 AAAAENVVSILDAE-----TQACRLSLQ-GH-TKPIDSVCWD--PSGE-LLASVSED--SVRVWTVG 483 (567)
Q Consensus 429 ~~~~dg~I~i~d~~-----~~~~~~~~~-~h-~~~V~~l~~s--p~g~-~l~s~s~d--~I~iwd~~ 483 (567)
++-.+..|..||.+ +++.+..+. ++ ...+..|++. ++++ ||++.+.+ ...+||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999889999965 355665553 22 2468888884 4555 66666644 89999996
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00024 Score=73.57 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=72.3
Q ss_pred CeEEEEEcC-CCC-eEEEEeCCCcEEEEeCCCCeeeeeeccc---CccEEEEEE-------CCCCCeEEEEeCCC-----
Q 008393 289 KVICCHFSS-DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRF-------SPSMPRLATSSFDK----- 351 (567)
Q Consensus 289 ~V~~l~~s~-dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h---~~~V~~i~f-------sp~~~~l~s~s~dg----- 351 (567)
....|+|+| ++. ++++....+.|++.|++++.....+..- ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456899998 344 4444444577999999887776655432 235899999 99999777776654
Q ss_pred --cEEEEEcCCCCcee-----EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 352 --TVRVWDADNPGYSL-----RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 352 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
.|.+++....+... ..+... .....++++|++..|+++...++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 25566544311111 122111 2334677788767777677777778888876
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0009 Score=73.88 Aligned_cols=202 Identities=10% Similarity=-0.014 Sum_probs=130.3
Q ss_pred CCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcC
Q 008393 286 STSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDAD 359 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~ 359 (567)
....+..|+|++....| ++-...+.|+.+++... .....+.........|++.+.+..|+.+ ...+.|.+.+++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 35567899999855544 45555678999988753 2233344344557789998877655544 557889999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC-CC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN 434 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-dg 434 (567)
. ......+.........|++.|.+..|+++-... +.|.+.++........+.. ....|++.+..++|+++.. .+
T Consensus 502 G-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 502 G-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp S-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred C-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 5 333333333445689999999877777665333 7899999876555444443 4577999988888888866 56
Q ss_pred eEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCce
Q 008393 435 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC 490 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~ 490 (567)
.|..+++........+.. .-.....|++. +..|+..... .|...+..++.....
T Consensus 581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL 638 (791)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred cEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEE
Confidence 899999876544433332 22344567664 3355555544 788888776644333
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-05 Score=82.96 Aligned_cols=226 Identities=7% Similarity=-0.003 Sum_probs=126.1
Q ss_pred EEEECC-CCCeEEEEeCCC-----------cEEEEEcCCCCce-eEEe-ccCCCcEEEEEEcCCCCeEEEEEe-CCCcEE
Q 008393 334 DVRFSP-SMPRLATSSFDK-----------TVRVWDADNPGYS-LRTF-MGHSASVMSLDFHPNKDDLICSCD-GDGEIR 398 (567)
Q Consensus 334 ~i~fsp-~~~~l~s~s~dg-----------~I~iwd~~~~~~~-~~~~-~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~ 398 (567)
++++.+ ++++++.|+.+. .+.+||..+.... +..+ ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 556667 888888887643 5889999874432 1222 12333344567777765 555666 456899
Q ss_pred EEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEE-CC-----CeEEEEECCCCeEEEEe----cCCCCCeeEEEEcC
Q 008393 399 YWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAA-AE-----NVVSILDAETQACRLSL----QGHTKPIDSVCWDP 464 (567)
Q Consensus 399 iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~d-----g~I~i~d~~~~~~~~~~----~~h~~~V~~l~~sp 464 (567)
+||..+.+....-.. ....+...+++..+++++ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999988765543211 123445566777788877 33 57999999887644320 00000000011223
Q ss_pred CCCEEEEEe----------CCeEEEEeCCCCCCCceEEEeec------CCCceEEEEEeC-CCCeEEEEEcCC-------
Q 008393 465 SGELLASVS----------EDSVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHP-TYPSLLVIGCYQ------- 520 (567)
Q Consensus 465 ~g~~l~s~s----------~d~I~iwd~~~~~~~~~i~~~~~------~~~~i~~~~~sp-~~~~l~~~~~dg------- 520 (567)
++.+++.++ .+.+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 344444442 23678899876532111111111 011223444444 566666666432
Q ss_pred ----eEEEEECCCCcEEEec---cccCC-eeEEEEecCCCEEEEEECC
Q 008393 521 ----SLELWNMSENKTMTLT---AHEGL-IAALAVSTETGYVASASHD 560 (567)
Q Consensus 521 ----~I~iwd~~~~~~~~~~---~h~~~-V~~l~~spdg~~l~s~s~D 560 (567)
.|.+||..+.....+. ..... -.++++.+++++++.||.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6889998887766543 12222 2345667899999999865
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0031 Score=67.86 Aligned_cols=274 Identities=10% Similarity=0.009 Sum_probs=159.1
Q ss_pred CCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCce
Q 008393 288 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYS 364 (567)
Q Consensus 288 ~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~ 364 (567)
.....+++++.+..|+ +-...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++.. ..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ce
Confidence 4577899999665554 4456789999998754433333344456778999998767766654 356777777642 22
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC-CCeEEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVVSILD 440 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-dg~I~i~d 440 (567)
.......-.....|++.+++..|+++-...+.|..+|+.......... .+...+++.. +.++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS--SEEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEEEEEE
Confidence 222323445678999999888888777778899999997654433332 1233455543 35555554 67888888
Q ss_pred CCCCeEEEEecCCCCC-------------------------eeEEEE-----------cC-------CC--------CEE
Q 008393 441 AETQACRLSLQGHTKP-------------------------IDSVCW-----------DP-------SG--------ELL 469 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~-------------------------V~~l~~-----------sp-------~g--------~~l 469 (567)
..+++....+...... ...+|+ .| |+ .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 8766433222111000 011111 11 11 144
Q ss_pred EEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEE-eccccCCeeEEEE
Q 008393 470 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMT-LTAHEGLIAALAV 547 (567)
Q Consensus 470 ~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~ 547 (567)
+.+....|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++....... +......+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 44444466777776543211111111 1234678899997777777764 5689999988654433 3333356778999
Q ss_pred ecCCCEEEEEE-CCCcEEE
Q 008393 548 STETGYVASAS-HDKFVKL 565 (567)
Q Consensus 548 spdg~~l~s~s-~Dg~I~i 565 (567)
.+.++.|+.+. ..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555444433 3444543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0024 Score=68.82 Aligned_cols=217 Identities=10% Similarity=-0.025 Sum_probs=141.3
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 419 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~ 419 (567)
+|+.+ ....|+..++++...........-..+..|+|++.+..++++-..++.|..+++........+.. ....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 45669999998643221111123356889999998888887877889999999987655444442 356789
Q ss_pred EecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceEEEee
Q 008393 420 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 420 ~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
+.+.++.++.+.. .+.|.+.++........+...-.....|+++|...+|+.... . .|...++.... ...+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE---E
Confidence 9988888777765 679999998765433333334456789999996555555552 3 78888876432 2222 2
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
........+++++++..|+.+... +.|..+|+.......+.........|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245567899999988888887654 689999997755443333344556777764 333333333455543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0016 Score=70.06 Aligned_cols=221 Identities=9% Similarity=-0.017 Sum_probs=137.2
Q ss_pred CCCcEEEEeCCCCe-eeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 307 HDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 307 ~dg~I~vwd~~~~~-~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
....|++.+++... ....+.........|+|++.+..|+.+.. .+.|..++++........+...-.....|++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 46778888887543 22223333455789999997777766654 67788999875322223333333678999999987
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCeeE
Q 008393 385 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
..++++-...+.|.+.++........+. .....+++.|..+.++.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 8888787788999999998655433332 24567899998888888774 367888887654333333333456789
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~ 532 (567)
|++++++..|+.+... .|..+|+........+. ........+++..+ .|+.+. ..+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999987777777654 89999986432212111 11122234566544 566655 346888888877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0092 Score=64.24 Aligned_cols=222 Identities=8% Similarity=-0.046 Sum_probs=148.3
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
+|+.+ ..+.|+..++++......+. ..-..+..|+|++.+..|+.+ ..++.|..++++.. .....+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceE
Confidence 44444 46788999998655433332 223468899999976666655 45788999998753 2223333223457789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGH 453 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h 453 (567)
++.+.+..|+++-...+.|.+.++........+. .....+++.|..+.++.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 9988878888787778899999997654333332 24578899998888888774 5688888887654333333 3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC
Q 008393 454 TKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 530 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 530 (567)
-.....|++++++..|+.+... .|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 4567899999987777777655 899999975422 22 222334455777765 35666654 578999997666
Q ss_pred c
Q 008393 531 K 531 (567)
Q Consensus 531 ~ 531 (567)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.11 E-value=6.2e-06 Score=90.39 Aligned_cols=224 Identities=8% Similarity=-0.035 Sum_probs=134.6
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCC---CceeEEeccCCCcEEEEEEcC
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHP 382 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~p 382 (567)
..+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 346788888877665544443 33467889998777766664 4578999998741 111111211223355688876
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCe
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
.+..|+++-...+.|.++++........+.. ....+++.|.++.|+.+.. .+.|..+++........+...-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 6667776666678999999886654444332 3467888888777776654 2688888876443222222223456
Q ss_pred eEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEE
Q 008393 458 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMT 534 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~ 534 (567)
..|+|++++..|+.+... .|.++++... ....+............+++..+ .|+++. ..+.|..++..+++.+.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 789999986666655544 8999998643 22222211111122334455443 455554 45689999987776653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00094 Score=66.60 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=121.4
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee--eeeec---ccCccEEEEEECCC---CCeEEEEeC-C-----CcE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE---EHSSLITDVRFSPS---MPRLATSSF-D-----KTV 353 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~--~~~l~---~h~~~V~~i~fsp~---~~~l~s~s~-d-----g~I 353 (567)
..-..++|.|||+++++ ..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34569999999985554 5679999998 3432 22221 22456889999998 556555543 2 568
Q ss_pred EEEEcCCCC----c-eeEEec---cCCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC-------
Q 008393 354 RVWDADNPG----Y-SLRTFM---GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG------- 405 (567)
Q Consensus 354 ~iwd~~~~~----~-~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~------- 405 (567)
..|+..... . .+..+. +.......|+|.|+|. |+++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 888876421 1 112232 1112346899999985 5544332 256666665531
Q ss_pred -----eeeEEEe-C--CeeEEEEecCCCEEEEEECC-Ce--------EEEEECCC----------------CeEEEEecC
Q 008393 406 -----SCTRVFK-G--GTAQMRFQPHLGRYLAAAAE-NV--------VSILDAET----------------QACRLSLQG 452 (567)
Q Consensus 406 -----~~~~~~~-~--~~~~~~~~~~~~~l~~~~~d-g~--------I~i~d~~~----------------~~~~~~~~~ 452 (567)
.....+. + ....++|+++.+.++++... +. |.+..... ..++..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 1111121 1 24557899955556555442 22 33332211 01222332
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC---ceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 453 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG---ECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~---~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
+......++| .+|.++++...+ .|...++...... .....+......+..+++.|||..+++.
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 466666665555 7888877643210 1122222334568899999998755544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.002 Score=64.15 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=122.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCC---CCeEEEEEeCC-----CcEE
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDGD-----GEIR 398 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~---~~~li~s~~~d-----g~I~ 398 (567)
..-..|+|.|+|+ |+++..+|.|++++ +.....+..+. ........|+|+|+ +..++++.... +.|.
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 3467999999998 45556679999998 32111122111 12356889999998 56666555433 6788
Q ss_pred EEECCCCee-----e-EEEe--C----CeeEEEEecCCCEEEEEEC-------------CCeEEEEECCCC---------
Q 008393 399 YWSINNGSC-----T-RVFK--G----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ--------- 444 (567)
Q Consensus 399 iwd~~~~~~-----~-~~~~--~----~~~~~~~~~~~~~l~~~~~-------------dg~I~i~d~~~~--------- 444 (567)
.|+...+.. + ..+. . ....+.|.|++..+++.+. .+.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888775421 1 1132 1 2357899998854444332 146666666531
Q ss_pred -----eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eE------EEEeCCCCCC---------------CceEEEeec
Q 008393 445 -----ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SV------RVWTVGSGSE---------------GECVHELSC 496 (567)
Q Consensus 445 -----~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I------~iwd~~~~~~---------------~~~i~~~~~ 496 (567)
..+. ..++ .....++|+| +|.++++-... .+ .|.-+..+.. ...+..+ .
T Consensus 189 ~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~ 265 (352)
T 2ism_A 189 RRGARPEVY-SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-P 265 (352)
T ss_dssp CTTSCTTEE-EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-T
T ss_pred CCCCCccEE-EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-C
Confidence 0111 1122 2356789999 67665554433 32 2333222220 0122222 1
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-------EEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.......++| .++..+++.-..+.|...++.... ...+..-...+..+++.|||.++++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234556677 456544444445678877776432 112222335789999999998777654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0024 Score=62.57 Aligned_cols=188 Identities=13% Similarity=0.174 Sum_probs=122.3
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC----CC---eEEEEEeC--CCcEEEEECC--CCeee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KD---DLICSCDG--DGEIRYWSIN--NGSCT 408 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~----~~---~li~s~~~--dg~I~iwd~~--~~~~~ 408 (567)
...+++.....+-+.+||+. ++.+..+.. +.++.+.+-|. +. ..+++.-. ++.|.+|++. ++. +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~--G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD--GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT--SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcCC--CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34466666677789999994 666676653 56777777653 11 23444444 6899999773 433 3
Q ss_pred EEEe----------CCeeEEEE--ecCCC--EEEEEECCCeEEEEECC-------CCeEEEEecCCCCCeeEEEEcCCCC
Q 008393 409 RVFK----------GGTAQMRF--QPHLG--RYLAAAAENVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGE 467 (567)
Q Consensus 409 ~~~~----------~~~~~~~~--~~~~~--~l~~~~~dg~I~i~d~~-------~~~~~~~~~~h~~~V~~l~~sp~g~ 467 (567)
..+. .....+|+ ++..+ ++++...++.+..|++. +.+.+.+|.. ...+..+..++...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence 3331 22334666 66555 46777778999998882 3466777764 35788899999889
Q ss_pred EEEEEeCC-eEEEEeCCCC--CCCceEEEeec--CCCceEEEEE--eCCCC-eEEEEE-cCCeEEEEECC-CCcEE
Q 008393 468 LLASVSED-SVRVWTVGSG--SEGECVHELSC--NGNKFHSCVF--HPTYP-SLLVIG-CYQSLELWNMS-ENKTM 533 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~--~~~~~i~~~~~--~~~~i~~~~~--sp~~~-~l~~~~-~dg~I~iwd~~-~~~~~ 533 (567)
.|+.+-++ .|..|+.+.. .....+..+.. -...+..+++ .++++ +|++++ .++++.+||.. +.+.+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 99999999 8777775432 22344544421 1235777877 45566 777777 56799999997 45544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0054 Score=61.06 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=125.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-eeeeec---ccCccEEEEEECCC---CCeEEEEeC----C----C
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE---EHSSLITDVRFSPS---MPRLATSSF----D----K 351 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-~~~~l~---~h~~~V~~i~fsp~---~~~l~s~s~----d----g 351 (567)
-.....++|.|||++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34567999999997555 45679999997 3454 222221 22356889999997 555555443 3 5
Q ss_pred cEEEEEcCCCC------ce-eEEec-cCCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC-----
Q 008393 352 TVRVWDADNPG------YS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG----- 405 (567)
Q Consensus 352 ~I~iwd~~~~~------~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~----- 405 (567)
.|..|+..... +. +..+. ........|+|.|+|. |+++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67888876531 11 11122 1112246799999986 4444332 245666665432
Q ss_pred ----eeeEEEe-CCeeEEEEecCCCEEEEEECCC----eEEEEECCC----------------CeEEEEecCCCCCeeEE
Q 008393 406 ----SCTRVFK-GGTAQMRFQPHLGRYLAAAAEN----VVSILDAET----------------QACRLSLQGHTKPIDSV 460 (567)
Q Consensus 406 ----~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg----~I~i~d~~~----------------~~~~~~~~~h~~~V~~l 460 (567)
..+.... .....++|+++.+.++++.... .|.+..... ..++..+.........+
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 0111111 1345788999656666665432 344433211 01223331122456788
Q ss_pred EEc-------CCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCCCeEEEE
Q 008393 461 CWD-------PSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 461 ~~s-------p~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~ 516 (567)
+|. .+|.++++.... .|...++...........+. .....+..+++.|||..+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 884 467777666555 88888886432111122332 224568899999998644443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.026 Score=62.28 Aligned_cols=262 Identities=10% Similarity=0.098 Sum_probs=153.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...|.++....+| .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+| |..||..+ .. +.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~G-l~~~~~~~-~~-~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALNG-LYTYQLQS-RK-LT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETTE-EEEEETTT-CC-EE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCCc-ceeEeCCC-Ce-EE
Confidence 4568888888776 555666554 789998876544321122335777754 344 566677664 88899875 22 22
Q ss_pred Eec-----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEECC
Q 008393 367 TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 367 ~~~-----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~d 433 (567)
.+. .....|.++....++..++ +.. +-|..++..+++....... .+.++....+++.+.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 331 1235688888887766444 443 4588889887664332111 1455666666676666664
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEe-----ecCCCceEEEEEeC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHP 508 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~-----~~~~~~i~~~~~sp 508 (567)
+.|..||..+++...........|.++....+|.+.+.. .+.+.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 578899988775432211123458888888888766644 45888898765421 111100 11234588888887
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcE-EEec-----cccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKT-MTLT-----AHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~-~~~~-----~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+|. |.+|+..| +.++....... .... .....|.++....+|.+.+ |+.+|.++
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~ 347 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR 347 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence 776 66676666 55554322111 1111 1234688888877777654 34555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0037 Score=60.68 Aligned_cols=193 Identities=8% Similarity=0.103 Sum_probs=119.5
Q ss_pred EEEEcCCCCeEEEEe-CCCcEEEEeCCCCeeeee-ecc----c--CccEEEEEE---CCCCCeEEEEe------------
Q 008393 292 CCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTN-LEE----H--SSLITDVRF---SPSMPRLATSS------------ 348 (567)
Q Consensus 292 ~l~~s~dg~~lasg~-~dg~I~vwd~~~~~~~~~-l~~----h--~~~V~~i~f---sp~~~~l~s~s------------ 348 (567)
|++|++....|..++ ..+.|..|+...+..... +.+ . ...+..|.| .++++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 789988555555555 789999999975543332 322 1 114689999 68877776543
Q ss_pred -CCCcEEEEEcC---CCCceeE-Eecc-----------CCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEE
Q 008393 349 -FDKTVRVWDAD---NPGYSLR-TFMG-----------HSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVF 411 (567)
Q Consensus 349 -~dg~I~iwd~~---~~~~~~~-~~~~-----------h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~ 411 (567)
.+..|..||+. +...... .+.. -......++..++|+-++ +++.- +.|..++.........+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKTVSTFA 175 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCCEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCEEeeee
Confidence 25779999998 5332211 2211 113488999999987555 77777 77777777654332222
Q ss_pred e--------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE-EEEec--CC---CCCeeEE-EEcCCCCEEE-EEeCC
Q 008393 412 K--------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQ--GH---TKPIDSV-CWDPSGELLA-SVSED 475 (567)
Q Consensus 412 ~--------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~--~h---~~~V~~l-~~sp~g~~l~-s~s~d 475 (567)
. .+.+.+++.|++..|++....+.|..+|+.+... ...+. +. -.....| ..-.+|+.|+ +....
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~ 255 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAP 255 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETT
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCC
Confidence 1 1345899999999999998899999999885432 01121 21 1223343 3334777744 44445
Q ss_pred -eEEEEeCCCC
Q 008393 476 -SVRVWTVGSG 485 (567)
Q Consensus 476 -~I~iwd~~~~ 485 (567)
.+.+.+....
T Consensus 256 ~~~~l~S~DgW 266 (334)
T 2p9w_A 256 YAISFRSWDNW 266 (334)
T ss_dssp EEEEEECSSTT
T ss_pred CEEEEECCCCc
Confidence 5555555443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0023 Score=63.48 Aligned_cols=167 Identities=8% Similarity=0.035 Sum_probs=97.5
Q ss_pred CCCcEEEEEcCCCCceeE--Eecc-----CCCcEEEEEEcC--CCC-eEEEEEeC--CCcEEEEECCCC--ee--eEEEe
Q 008393 349 FDKTVRVWDADNPGYSLR--TFMG-----HSASVMSLDFHP--NKD-DLICSCDG--DGEIRYWSINNG--SC--TRVFK 412 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~--~~~~-----h~~~V~~l~~~p--~~~-~li~s~~~--dg~I~iwd~~~~--~~--~~~~~ 412 (567)
.+|.|.++|.++...... .+.+ .......|.+.+ ++. +|+++-.. +..|.+|++... .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974322122 2222 234678888866 344 34444333 457777776543 22 22333
Q ss_pred C----CeeEEEEecCCCEEEEEE-----------------CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEE
Q 008393 413 G----GTAQMRFQPHLGRYLAAA-----------------AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 413 ~----~~~~~~~~~~~~~l~~~~-----------------~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s 471 (567)
+ ..+.+.+.+++..++... ..+.|+.||...-+. ... .-..-+.|+|+||++.|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~--~~~-~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV--VAE-GFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE--EEE-EESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE--eec-CCcccCcceECCCCCEEEE
Confidence 2 356788888865444432 125666676642222 122 2245688999999998888
Q ss_pred EeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC-CCCeEEEEEcC
Q 008393 472 VSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCY 519 (567)
Q Consensus 472 ~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp-~~~~l~~~~~d 519 (567)
+... .|..|++...........+ ......-.+++.+ +|++.+++..+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 7754 8999998643222223333 2345677889999 58866655544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0077 Score=59.93 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=127.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCC---CCeEEEEEeC---C----Cc
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDG---D----GE 396 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~---~~~li~s~~~---d----g~ 396 (567)
.....|+|.|+++ |+++..+|.|++++.+. ...+..+. ........|+|+|+ +..++++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPSG-KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSSC-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCC-ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578899999996 55566679999997432 22222211 12356889999997 5566655442 3 56
Q ss_pred EEEEECCCC--e-----ee-EEEeC----CeeEEEEecCCCEEEEEEC-------------CCeEEEEECCCC-------
Q 008393 397 IRYWSINNG--S-----CT-RVFKG----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ------- 444 (567)
Q Consensus 397 I~iwd~~~~--~-----~~-~~~~~----~~~~~~~~~~~~~l~~~~~-------------dg~I~i~d~~~~------- 444 (567)
|..|+.... . .+ ..+.. ....+.|.|++..+++.+. .+.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887654 1 11 11221 2356899999865555332 246666666432
Q ss_pred --eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC----eEEEEeCCCCCC---------------CceEEEeecCCCceE
Q 008393 445 --ACRLSLQGHTKPIDSVCWDP-SGELLASVSED----SVRVWTVGSGSE---------------GECVHELSCNGNKFH 502 (567)
Q Consensus 445 --~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d----~I~iwd~~~~~~---------------~~~i~~~~~~~~~i~ 502 (567)
..+. ..++. ....|+|++ +|.++++-... .|.+..- +.. ...+..+........
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1121 22333 345799999 67765554322 2444332 210 012222212234567
Q ss_pred EEEEe-------CCCCeEEEEEcCCeEEEEECCCC-cEE---Eec-cccCCeeEEEEecCCCEEEEEE
Q 008393 503 SCVFH-------PTYPSLLVIGCYQSLELWNMSEN-KTM---TLT-AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 503 ~~~~s-------p~~~~l~~~~~dg~I~iwd~~~~-~~~---~~~-~h~~~V~~l~~spdg~~l~s~s 558 (567)
.++|. .++.++++.-..+.|..+++... ... .+. .....+..+++.|||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 77883 46655555455568988888753 222 222 2245789999999998776654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.05 Score=60.02 Aligned_cols=266 Identities=9% Similarity=0.033 Sum_probs=153.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-ecc----cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEE----HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~-l~~----h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
...|.++....+|.+.+ |+. +-|..|+..+++.... +.. ....|.++....++..|..|... -|..+|..+
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~- 220 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPST- 220 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTT-
T ss_pred CCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCC-
Confidence 35688998888887665 444 4577888877654321 111 12348888888777766566644 488888875
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----------CCeeEEEEecCCCEEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~ 431 (567)
+.......-....|.++....++..++ |+ ++-|.+++..++....... ..+.++....+ +.+.+++
T Consensus 221 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lWiGT 296 (758)
T 3ott_A 221 GQIKQTEAFHNNSIKSLALDGNGDLLA--GT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-HNIWLGT 296 (758)
T ss_dssp TEEEEEEEEEEEEEEEEEECTTCCEEE--EE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-CCEEEEE
T ss_pred CeEEeccCCCCCeEEEEEEcCCCCEEE--Ee-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-CCEEEEe
Confidence 322111111234588888887776444 44 3468889887765433221 12344555544 4566666
Q ss_pred CCCeEEEEECCCCeEEEEec-----CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEee-------cCCC
Q 008393 432 AENVVSILDAETQACRLSLQ-----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-------CNGN 499 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~-------~~~~ 499 (567)
..| +.++.....-...... .....|.++....+|.+.+. +.+.+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcceeecccccccce-eEEeccCCcCCCCCCC
Confidence 666 5444332211111111 12346889988888886665 44577777765432111 11111 1234
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec--c-----ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--A-----HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~--~-----h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++.+.+ |+..+-|.+|
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 578888777776 56666 568999999887655332 1 224588888777776544 5554445444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0087 Score=58.08 Aligned_cols=203 Identities=11% Similarity=0.102 Sum_probs=126.6
Q ss_pred cCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEecc----CC--CcEEEEEE---cCCCCeEEEEEe-----
Q 008393 328 HSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----HS--ASVMSLDF---HPNKDDLICSCD----- 392 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~----h~--~~V~~l~~---~p~~~~li~s~~----- 392 (567)
....-.+++|.+....|+.++ ..++|..||..........+.+ .. ..+..|.| .++ ..|+++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence 333445788988666666666 7999999999753322222222 11 14678999 587 45555443
Q ss_pred --------CCCcEEEEECC---CCeeeEEEe------C----------CeeEEEEecCCCEEEEEECC-CeEEEEECCCC
Q 008393 393 --------GDGEIRYWSIN---NGSCTRVFK------G----------GTAQMRFQPHLGRYLAAAAE-NVVSILDAETQ 444 (567)
Q Consensus 393 --------~dg~I~iwd~~---~~~~~~~~~------~----------~~~~~~~~~~~~~l~~~~~d-g~I~i~d~~~~ 444 (567)
.+..|..||+. +++.+.... + ....++..++|+.+++.+.. +.|..++....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 777765543 1 35678999999999988888 99998888765
Q ss_pred eEEEEe-cC----CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-c---CCCceEE-EEEeCCCCeE
Q 008393 445 ACRLSL-QG----HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-C---NGNKFHS-CVFHPTYPSL 513 (567)
Q Consensus 445 ~~~~~~-~~----h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~---~~~~i~~-~~~sp~~~~l 513 (567)
....-+ .. .....+.|+++|+|++|++...+ .|..+|+...... .+..-. + ....... +..-.+|+.|
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEE
Confidence 333211 11 12236799999999988877667 8999998742110 122110 1 1222334 3444577775
Q ss_pred EEEEc-CCeEEEEECCCCcE
Q 008393 514 LVIGC-YQSLELWNMSENKT 532 (567)
Q Consensus 514 ~~~~~-dg~I~iwd~~~~~~ 532 (567)
+++.. .+.+.+.+....+.
T Consensus 249 lV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp EEEEETTEEEEEECSSTTSE
T ss_pred EEEcCCCCEEEEECCCCcce
Confidence 65554 45555665554443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0022 Score=62.14 Aligned_cols=228 Identities=13% Similarity=0.043 Sum_probs=116.3
Q ss_pred CCCeEEEEe-CC-----CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCC--
Q 008393 298 DGKLLATGG-HD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG-- 362 (567)
Q Consensus 298 dg~~lasg~-~d-----g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~-- 362 (567)
++.+++.|+ .+ ..+.+||..+.+.... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 33 4788999887654332 2211111222222 46677777754 458999998744
Q ss_pred -ceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEeC--Ce-eEEEEecCCCEEEEEEC
Q 008393 363 -YSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 363 -~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~ 432 (567)
.... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-.. .. ...+...++..++.++.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 2111 11111111122222 34567677654 3688999988775543221 11 11111224444555554
Q ss_pred C-----CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC------CeEEEEeCCCCCCCceEEEeecCCCc
Q 008393 433 E-----NVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 433 d-----g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~------d~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+ ..+.+||+.+.+-...-...... -.+++. -++++++.|+. +.|.+||+.+.. ...+..+......
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCY 246 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcccc
Confidence 3 57899999887544321111111 112222 25677777764 258999997641 1222222211112
Q ss_pred eEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEE
Q 008393 501 FHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMT 534 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~ 534 (567)
...+. -++..++.|+.+ ..|.+||+.+.+...
T Consensus 247 ~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 247 VGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp CEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred eeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 22222 256666666655 368999998876553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.032 Score=55.80 Aligned_cols=247 Identities=10% Similarity=0.169 Sum_probs=149.4
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.+..|.|.|+.++..+..-.-. --+...+|..+.||.=. ..++.|+|+++ +..+..+.- ...|.-=.|..+. .
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~-K~klks~~~-~e~VvfWkWis~~-~ 118 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN-T 118 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCCCEEEEEETT-E
T ss_pred CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHH-hhhhcceec-CCCceEEEecCCC-e
Confidence 3457889999876544222111 12345788887777765 67899999998 555666553 3456666665442 3
Q ss_pred EEEEEeCCCcEEEEECCC-CeeeEEEeCC-------eeEEEEecCCCEEEEEEC-------CCeEEEEECCCCeEEEEec
Q 008393 387 LICSCDGDGEIRYWSINN-GSCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~-~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 451 (567)
+.++. +..|+-|++.. ....+.|..+ +.....+++..+++..+- .|.+.+|..+.+..- .+.
T Consensus 119 l~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ie 195 (494)
T 1bpo_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE 195 (494)
T ss_dssp EEEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EEC
T ss_pred EEEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhe
Confidence 33232 67899999975 3455666532 333456777787776553 367889988876433 566
Q ss_pred CCCCCeeEEEEcCC---CCEEEEEeC---C-eEEEEeCCCC---CC--CceEEEee----cCCCceEEEEEeCCCCeEEE
Q 008393 452 GHTKPIDSVCWDPS---GELLASVSE---D-SVRVWTVGSG---SE--GECVHELS----CNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 452 ~h~~~V~~l~~sp~---g~~l~s~s~---d-~I~iwd~~~~---~~--~~~i~~~~----~~~~~i~~~~~sp~~~~l~~ 515 (567)
+|......+.+..+ ..+++.+.. + +++|.++... .. .+....+. ...+-..++.+++....++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 66544433333221 124555544 2 7899998543 11 01111111 12344667889999999999
Q ss_pred EEcCCeEEEEECCCCcEEEe-ccccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 516 IGCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
.+..|.|++||++++.++.. .-....|..-+......=++.....|.|
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999998732 3334455544444443344444455544
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=0.014 Score=67.31 Aligned_cols=271 Identities=13% Similarity=0.107 Sum_probs=145.8
Q ss_pred CCCeEEEEEcCC------CCeEEEEeC-CCcEEEEeCCCCeeeeeeccc-CccEEEEEEC--CCCCeEEEEeCCCcEEEE
Q 008393 287 TSKVICCHFSSD------GKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-SSLITDVRFS--PSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 287 ~~~V~~l~~s~d------g~~lasg~~-dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fs--p~~~~l~s~s~dg~I~iw 356 (567)
...|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....-. .....++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 568999999863 369999996 999999999987766543211 1233444332 234588999999998777
Q ss_pred EcCCC-CceeE---EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-Cee-EEEEecC--CCEEE
Q 008393 357 DADNP-GYSLR---TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTA-QMRFQPH--LGRYL 428 (567)
Q Consensus 357 d~~~~-~~~~~---~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-~~~-~~~~~~~--~~~l~ 428 (567)
.++.. +.... .+-| ..++.-..|...+..-++.++ +....+|.-...-....+.. .+. ...|+.. .+.++
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence 66531 22211 2223 344544444444444444444 44444444332211111111 122 2334432 23344
Q ss_pred EEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-------------------------------
Q 008393 429 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED------------------------------- 475 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------------------------------- 475 (567)
+..++.++|.-+.+. -.+.++. -...+..++++|+.+.++.+..+
T Consensus 711 -~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 -LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp -EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred -EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 344555888766432 2223333 23567778888876655443311
Q ss_pred -------------------eEEEEeCCCCCCCceEEEeecCCC-ceEEEE---EeCC-CCeEEEEE----------cCCe
Q 008393 476 -------------------SVRVWTVGSGSEGECVHELSCNGN-KFHSCV---FHPT-YPSLLVIG----------CYQS 521 (567)
Q Consensus 476 -------------------~I~iwd~~~~~~~~~i~~~~~~~~-~i~~~~---~sp~-~~~l~~~~----------~dg~ 521 (567)
.|+++|-.+. +.+..+..... .+.+++ |..+ ..+|++|+ ..|.
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2455555443 33333332222 233333 3222 46788876 2468
Q ss_pred EEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 522 LELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 522 I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++|++..++.. ......++|++++-- +|++|+.. ..+|++|+
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 999999755433 233457889998743 45444433 35788874
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0079 Score=59.12 Aligned_cols=230 Identities=10% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec---ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~---~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
...+.+|.|++ +..++ ++..+.|.. ..+.++.-..+. .+...+..|.+.+++..++.+ .+|.| |.....+.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 44688899976 44444 455665543 233333322222 233457888887766655554 45644 32222233
Q ss_pred eeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEE-EEC--CCCeeeEE-EeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 364 SLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY-WSI--NNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 364 ~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~i-wd~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
... ....+...+..+.+.+++. +++.+ .+|.|.. +|- .+-+.+.. .......+.+.+++ .+++++.+|.+++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G~~~~ 229 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGGKIAF 229 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEEEEETTTEEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEEEEeCCceEEE
Confidence 222 2334566789999998865 45444 4555444 332 12222211 11245567777765 5667777888877
Q ss_pred EECCCCeEEEEecC----CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 439 LDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 439 ~d~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
.+...++.-..+.. +...+.++.+.+++.+++++..+.| ++....+.....+.........+..+.|.+++ .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 65333433222221 2235889999988888887765566 34444443322222111123457788887544 477
Q ss_pred EEEcCCeEEEEEC
Q 008393 515 VIGCYQSLELWNM 527 (567)
Q Consensus 515 ~~~~dg~I~iwd~ 527 (567)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 8888898877664
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=80.77 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=117.1
Q ss_pred CCeEEEEEcCCCCeEEEE-eCCCcEEEEeCCC----CeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCC
Q 008393 288 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNP 361 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg-~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~ 361 (567)
..+..++|++.+..|+.+ ...+.|..+++.. ......+.........|++.+.+..| ++-...+.|.+++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg- 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG- 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS-
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC-
Confidence 345688999876666655 3567899999875 22222222222335567887654444 4445578899999875
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC-CCeE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVV 436 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-dg~I 436 (567)
......+.........|++.|.+..|+++-... +.|.++++........+. .....+++++++++|+++.. .+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 332222332234567889998777676554333 678888876443322222 23467999998888777765 5789
Q ss_pred EEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 437 SILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
..+|+........+. ........|++..+ .++++.... .|..++..++
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 999987543332222 11223445666554 333343344 8999987665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0057 Score=59.31 Aligned_cols=224 Identities=9% Similarity=0.024 Sum_probs=115.3
Q ss_pred CeEEEEeC--CCcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC----CcEEEEEcCCCCceeE-Eecc
Q 008393 300 KLLATGGH--DKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLR-TFMG 370 (567)
Q Consensus 300 ~~lasg~~--dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d----g~I~iwd~~~~~~~~~-~~~~ 370 (567)
.+++.|+. ...+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||+.+...... .+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 36788999887654322 2211122222222 56677777754 5688899887432211 1111
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEEeC--C--eeEEEEecCCCEEEEEEC--------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--G--TAQMRFQPHLGRYLAAAA-------- 432 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~-------- 432 (567)
.......+.+ ++.+++.|+.+ ..+.+||+.+.+....-.. . ...+.. .++..++.++.
T Consensus 91 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111122222 34577677755 4689999998875443211 1 111222 23344444443
Q ss_pred -CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC------CeEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 433 -ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 433 -dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
...+.+||+.+.+-...-...... -.+++.. ++++++.|+. +.+.+||+.+.. ...+..+.........+
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEE
Confidence 356899999887543321111111 1223332 5667776653 258899987641 12222222112222222
Q ss_pred EEeCCCCeEEEEEcC-----CeEEEEECCCCcEE
Q 008393 505 VFHPTYPSLLVIGCY-----QSLELWNMSENKTM 533 (567)
Q Consensus 505 ~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~ 533 (567)
.+ ++..+++|+.+ ..+.+||+.+.+..
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 33 56667777644 47999999988755
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.015 Score=57.79 Aligned_cols=230 Identities=12% Similarity=0.106 Sum_probs=125.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEE----eccCCCcEEEEEEcCC---CCeEEEEEeC-------C
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRT----FMGHSASVMSLDFHPN---KDDLICSCDG-------D 394 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~----~~~h~~~V~~l~~~p~---~~~li~s~~~-------d 394 (567)
...+.|+|.|+++.|+++...|.|++++.+.... .+.. +.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3468999999998455666789999998542100 1111 1112345789999996 5556655433 2
Q ss_pred CcEEEEECCCC--e--eeE-EEeC---------CeeEEEEecCCCEEEEEECC--------------CeEEEEECCCC--
Q 008393 395 GEIRYWSINNG--S--CTR-VFKG---------GTAQMRFQPHLGRYLAAAAE--------------NVVSILDAETQ-- 444 (567)
Q Consensus 395 g~I~iwd~~~~--~--~~~-~~~~---------~~~~~~~~~~~~~l~~~~~d--------------g~I~i~d~~~~-- 444 (567)
..|..|++... . ... .+.. ....+.|.|++ .|+++..+ +.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35777776543 1 111 1211 13468999987 55554432 46777776532
Q ss_pred ------------eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC--eEEEEeCCCCCC----------------------
Q 008393 445 ------------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED--SVRVWTVGSGSE---------------------- 487 (567)
Q Consensus 445 ------------~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d--~I~iwd~~~~~~---------------------- 487 (567)
..+.. .++ .....++|++ +|.++++-... .=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 223 3357899999 66655543321 112222222111
Q ss_pred ------CceEEEeecCCCceEEEEEeC-------CCCeEEEEEcCCeEEEEECCCCcEE---Eec-cccCCeeEEEEecC
Q 008393 488 ------GECVHELSCNGNKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM---TLT-AHEGLIAALAVSTE 550 (567)
Q Consensus 488 ------~~~i~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-~h~~~V~~l~~spd 550 (567)
...+..+. +......++|.. ++.++++.-..+.|...++..++.. .+. .....+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 01111121 223456677764 4555555555678888888765433 222 22357899999999
Q ss_pred CCEEEEEE-CCCcE
Q 008393 551 TGYVASAS-HDKFV 563 (567)
Q Consensus 551 g~~l~s~s-~Dg~I 563 (567)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98766543 34544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.023 Score=56.23 Aligned_cols=189 Identities=14% Similarity=0.133 Sum_probs=114.5
Q ss_pred EEEEEcCCCCeEEEEe------------CCCcEEEEeCCC--Ceee-eeecc-----cCccEEEEEECC--CCC-eEEEE
Q 008393 291 ICCHFSSDGKLLATGG------------HDKKAVLWHTDT--LKSK-TNLEE-----HSSLITDVRFSP--SMP-RLATS 347 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~------------~dg~I~vwd~~~--~~~~-~~l~~-----h~~~V~~i~fsp--~~~-~l~s~ 347 (567)
-.+++.++|..+++++ .+|.|.++|.++ .+.. ..+.+ .......|.+.+ ++. +|+++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 3667788875555542 689999999873 2221 12222 223566677655 454 45555
Q ss_pred eC---CCcEEEEEcCCCCce---eEEeccC-CCcEEEEEEcCCCCeEEEEEe-----------------CCCcEEEEECC
Q 008393 348 SF---DKTVRVWDADNPGYS---LRTFMGH-SASVMSLDFHPNKDDLICSCD-----------------GDGEIRYWSIN 403 (567)
Q Consensus 348 s~---dg~I~iwd~~~~~~~---~~~~~~h-~~~V~~l~~~p~~~~li~s~~-----------------~dg~I~iwd~~ 403 (567)
.. +..|.+|+++..+.. +..+.+. -...+.+.+.++|. ++++.. ..|.|..+|..
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 32 467888888764332 2333332 24678999999875 443543 12456666653
Q ss_pred CCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCC-CeE--EEEecCCCCCeeEEEEcC-CCCEEEEEeCC-
Q 008393 404 NGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDP-SGELLASVSED- 475 (567)
Q Consensus 404 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~-~~~--~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d- 475 (567)
+...... ...+.++|+|++..++++.. .+.|..|++.. ++. ...+ ........+++++ +|++.+++..+
T Consensus 212 --~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 --DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp --CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred --eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 3322222 35688999999988888775 68999999863 322 2233 2245677899999 59988877645
Q ss_pred -eEEEEeCC
Q 008393 476 -SVRVWTVG 483 (567)
Q Consensus 476 -~I~iwd~~ 483 (567)
.|..|+..
T Consensus 289 ~~v~~~~P~ 297 (355)
T 3sre_A 289 MRIFFYDAE 297 (355)
T ss_dssp HHHHSCCTT
T ss_pred eEEEEECCC
Confidence 55555544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.016 Score=57.57 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee---e----cccCccEEEEEECCC---CCeEEEEeC--------
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---L----EEHSSLITDVRFSPS---MPRLATSSF-------- 349 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~---l----~~h~~~V~~i~fsp~---~~~l~s~s~-------- 349 (567)
.....|+|.|||++|+++...|.|++++.+ ++.... + .........|+|+|+ +.+|+.+..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 345799999999844455578999999854 332211 1 112345789999996 555555432
Q ss_pred CCcEEEEEcCCCCc---eeE-Eecc------CCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCCe
Q 008393 350 DKTVRVWDADNPGY---SLR-TFMG------HSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNGS 406 (567)
Q Consensus 350 dg~I~iwd~~~~~~---~~~-~~~~------h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~~ 406 (567)
...|..|+++.... ... .+.. .......|.|.|+|. |+++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 23566777654211 111 1111 111235799999984 5545433 2467777765320
Q ss_pred ------------eeEEEe---CCeeEEEEecCCCEEEEEECCC----eEEEEECC--------C----------------
Q 008393 407 ------------CTRVFK---GGTAQMRFQPHLGRYLAAAAEN----VVSILDAE--------T---------------- 443 (567)
Q Consensus 407 ------------~~~~~~---~~~~~~~~~~~~~~l~~~~~dg----~I~i~d~~--------~---------------- 443 (567)
....+. .....++|.+..+.++++.... .|.+.... .
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 112222 1356788999667777665431 23221100 0
Q ss_pred -----CeEEEEecCCCCCeeEEEEcC-------CCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-ecCCCceEEEEEeCC
Q 008393 444 -----QACRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPT 509 (567)
Q Consensus 444 -----~~~~~~~~~h~~~V~~l~~sp-------~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~~sp~ 509 (567)
..++..+.. ......++|.. +|.++++.... .|...++..+.. .....+ ......+..+++.|+
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-TEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-eeeEEcccCCCCceeEEEECCC
Confidence 011122222 23566788864 46676666555 888888764311 111122 223457889999999
Q ss_pred CCeEEE
Q 008393 510 YPSLLV 515 (567)
Q Consensus 510 ~~~l~~ 515 (567)
|..+++
T Consensus 334 G~lyv~ 339 (353)
T 2g8s_A 334 GYLYVL 339 (353)
T ss_dssp SCEEEE
T ss_pred CcEEEE
Confidence 984443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.051 Score=53.50 Aligned_cols=226 Identities=13% Similarity=0.113 Sum_probs=125.8
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEe----ccCCCcEEEEEEcCC---CCeEEEEE--eCCCcE
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTF----MGHSASVMSLDFHPN---KDDLICSC--DGDGEI 397 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~----~~h~~~V~~l~~~p~---~~~li~s~--~~dg~I 397 (567)
.-..-+.|+|.|+|.++++--..|.|++++..+... .+..+ .........|+|+|+ +..++++- ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344578999999998766665589999998654222 12111 123466899999995 34454432 245567
Q ss_pred EEEECCCC----------eee-EEEeC----CeeEEEEecCCCEEEEEEC-------------CCeEEEEECCCC-----
Q 008393 398 RYWSINNG----------SCT-RVFKG----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ----- 444 (567)
Q Consensus 398 ~iwd~~~~----------~~~-~~~~~----~~~~~~~~~~~~~l~~~~~-------------dg~I~i~d~~~~----- 444 (567)
.-|.+..+ +.+ ..+.. ....+.|.|++..+++.+. .+.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 77766542 111 11221 2356899999866666442 356666665432
Q ss_pred ----eEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C---eEEEEeCCCCCC---------------CceEEEeecCCCce
Q 008393 445 ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSE---------------GECVHELSCNGNKF 501 (567)
Q Consensus 445 ----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d---~I~iwd~~~~~~---------------~~~i~~~~~~~~~i 501 (567)
..+. -.+|.. ...++|+|+|.++++-.. + .|.+. ..+.. ...+..+..+....
T Consensus 190 Pf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 190 PFPGSPVY-SYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp SSTTCCEE-EBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCeEE-eeCCCC-cceEEECCCCCEEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 1121 224433 457999999887665432 2 34333 22211 11122222222345
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcE----E-EeccccCCeeEEEEecCCCEEEEEE
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKT----M-TLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~----~-~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
..++|.. +..++..-..+.|....+..... . .+.+..+.+..|+..|||.++++..
T Consensus 266 ~G~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5667763 44333333445676666655432 1 2334456799999999998776654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0059 Score=63.16 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=97.8
Q ss_pred cEEEEEEcC-CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC------eeEEEE-------ecCCCEEEEEECCC-----
Q 008393 374 SVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------TAQMRF-------QPHLGRYLAAAAEN----- 434 (567)
Q Consensus 374 ~V~~l~~~p-~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~------~~~~~~-------~~~~~~l~~~~~dg----- 434 (567)
....|+|.| +...|+++....+.|++.|+.++......... ...++| ++++..++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 45667766655578999999998877665442 577889 99998787777654
Q ss_pred --eEEEEECCC-CeEE-----EEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCC-------CCCC----------
Q 008393 435 --VVSILDAET-QACR-----LSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVG-------SGSE---------- 487 (567)
Q Consensus 435 --~I~i~d~~~-~~~~-----~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~-------~~~~---------- 487 (567)
.|.+++... +... ..+... .....++++|++..|+.+. .+ .|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 1110 111111 2345788999555455444 44 89999997 4432
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECC
Q 008393 488 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 528 (567)
Q Consensus 488 -~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 528 (567)
...+..+ ........++|+|++++|+++.. ...|+.++..
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0122222 22344678999999997776654 4688886653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.073 Score=53.30 Aligned_cols=234 Identities=11% Similarity=0.178 Sum_probs=156.9
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+.-.+|..+.+|.-. ...+.|||+++...+..+.-... |..=.|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 455677777777765 78999999999888877765444 4444554333 454444 4459999998756677777665
Q ss_pred C----CcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCeeEEE-EecCC----CEEEEEEC----
Q 008393 372 S----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA---- 432 (567)
Q Consensus 372 ~----~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~---- 432 (567)
. ..|.....+++.+.++++|- -.|.+.+|..+.+. ...+.++..+.. +..++ ..+++-+.
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 56778888999888877664 24678888887543 344555554443 32222 22333333
Q ss_pred CCeEEEEECCCC--------eEEEEe-cC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 433 ENVVSILDAETQ--------ACRLSL-QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 433 dg~I~i~d~~~~--------~~~~~~-~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
.+.++|.++... +....+ .. -.+--.++..++.-.+++..+.- .|++||++++ .++..-.....
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~ 301 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 301 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCC
Confidence 278999988542 111111 11 12334578888877788888877 9999999988 78888777778
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
.|...+.+....-++.....|.|.-..+.+...+
T Consensus 302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 8777777776666888888888877777766544
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.039 Score=53.34 Aligned_cols=234 Identities=6% Similarity=-0.041 Sum_probs=136.2
Q ss_pred cCCCCeEEEEe--CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC--------------CcEEEEEcC
Q 008393 296 SSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--------------KTVRVWDAD 359 (567)
Q Consensus 296 s~dg~~lasg~--~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d--------------g~I~iwd~~ 359 (567)
+.+|.+|+... .++.|...+.+... ...+... .+--|++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34666666654 35667666664333 3333322 133457888888777543 357777777
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEE---eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEEC-CCe
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-ENV 435 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~---~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~ 435 (567)
... ...+... . +..|+++++.++++- ..+..|+..++......+...... ..++++++.|+.... ...
T Consensus 97 g~~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 97 GHG--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp SCC--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCC
T ss_pred CCc--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCce
Confidence 533 2333222 1 235667788887665 345567777777555444444433 456788888887766 578
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
|...++..+.....+.+ ... ..+.|++.+|+....+ .|..-++..... .. +. ...+ ..|+|++.+
T Consensus 169 Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~---Lt--~~~~--~~~~~~g~~ 236 (302)
T 3s25_A 169 LYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VV---LT--EANI--EHYNVYGSL 236 (302)
T ss_dssp EEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EE---CS--CSCE--EEEEEETTE
T ss_pred EEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EE---Ee--CCCc--ceEEECCCE
Confidence 99999887765544432 222 3466888888877643 576777765422 21 21 1223 348888998
Q ss_pred EEEEEc--CCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 513 LLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 513 l~~~~~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
|+.+.. .+.|+..++.......+... .+.. +++.+.+|+-..
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~--i~i~~d~Iy~td 280 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKELAKG--EFCN--INVTSQYVYFTD 280 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEEEEES--CEEE--EEECSSEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCCccEEeeCC--ccce--EEEeCCEEEEEE
Confidence 887643 35888888877654433322 2333 344555555443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.009 Score=57.75 Aligned_cols=225 Identities=15% Similarity=0.097 Sum_probs=113.1
Q ss_pred CCeEEEEeCC----CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~d----g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~ 367 (567)
+.+++.|+.+ ..+.+||..+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+... ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW--TS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE--EE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCce--ee
Confidence 3455666643 4688888887654332 1111111122222 56677777654 3588899876332 22
Q ss_pred ecc---CCCcEEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEEEeC--Ce--eEEEEecCCCEEEEEEC---
Q 008393 368 FMG---HSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKG--GT--AQMRFQPHLGRYLAAAA--- 432 (567)
Q Consensus 368 ~~~---h~~~V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~--- 432 (567)
+.. ..... +++.. ++.+++.|+.++ .+.+||+.+.+....-.. .. ..+.. .++..++.++.
T Consensus 92 ~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 92 VANMRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVA 167 (302)
T ss_dssp ECCCSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred CCCCCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence 221 11111 22222 245666776553 578899988765543211 11 11222 23344444443
Q ss_pred ----CCeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 433 ----ENVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 433 ----dg~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
...+.+||+.+.+-...-..... .-.+++. -++++++.|+.+ .+.+||+.+. ....+..+.......
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNA 245 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC-CEeeCCCCCCccccC
Confidence 24689999988754432111111 1122322 256777777642 5889998764 112222221111111
Q ss_pred EEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEe
Q 008393 502 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTL 535 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~ 535 (567)
. ++ .-++..++.|+.++ .|.+||+.+.+...+
T Consensus 246 ~-~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 G-VC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp E-EE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred e-EE-EECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2 22 22566666666553 599999998876654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.068 Score=52.61 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=123.7
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eee----cccCccEEEEEECCC---CCeEEEE---eC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL----EEHSSLITDVRFSPS---MPRLATS---SF 349 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l----~~h~~~V~~i~fsp~---~~~l~s~---s~ 349 (567)
.+...-..-+.|+|.|||++|++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33334456679999999997777655899999987655432 222 123456899999995 4455443 23
Q ss_pred CCcEEEEEcCCC---------Cce-eEEec-cCCCcEEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC
Q 008393 350 DKTVRVWDADNP---------GYS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG 405 (567)
Q Consensus 350 dg~I~iwd~~~~---------~~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~~~-------------dg~I~iwd~~~~ 405 (567)
++.|.-|.+... .+. +..+. ........|.|.|+|. |+++.+. .|.|.-.+....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 456766766541 111 11221 1112345799999986 4445332 355555555432
Q ss_pred e-------eeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCC------------------eEEEEecCCCC
Q 008393 406 S-------CTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQ------------------ACRLSLQGHTK 455 (567)
Q Consensus 406 ~-------~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~------------------~~~~~~~~h~~ 455 (567)
- ....+.. ....++|+|+ +.++++-. ++.-.|.-+..+ .++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 0112221 2456889986 44554443 221122111111 11222222223
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC-CceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
....|+|. +|.+++..-.. .|....+..... .+....+......+..+++.|||..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 45667776 46666655555 676666654321 11222233344678888999988654443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.24 Score=57.02 Aligned_cols=271 Identities=10% Similarity=0.034 Sum_probs=146.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCc-
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGY- 363 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~- 363 (567)
+.+|.-..|...|..-+.+..+.-..+|... ++....--.-...-....|+.. ..-++..+ ++.++|..+++...
T Consensus 651 ~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~ 728 (1158)
T 3ei3_A 651 TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKL 728 (1158)
T ss_dssp SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSE
T ss_pred CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCe
Confidence 3455544554444433333335555555433 3332221111112234455432 12344333 45599998865322
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeC------------------------------------------------CC
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDG------------------------------------------------DG 395 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~------------------------------------------------dg 395 (567)
.++.+. -...+..++++|..+.+++.++. -+
T Consensus 729 ~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s 807 (1158)
T 3ei3_A 729 HIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVH 807 (1158)
T ss_dssp EEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEE
T ss_pred eEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeE
Confidence 233332 44678888888876655443321 02
Q ss_pred cEEEEECCCCeeeEEEeCC----eeEEE---EecC-CCEEEEEEC----------CCeEEEEECCCCeEEEEe-cCCCCC
Q 008393 396 EIRYWSINNGSCTRVFKGG----TAQMR---FQPH-LGRYLAAAA----------ENVVSILDAETQACRLSL-QGHTKP 456 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~----~~~~~---~~~~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~-~~h~~~ 456 (567)
.|++.|..+.+.+..+.-. +.+++ |..+ ..++++|+. .|.|.+|++..++..... ...+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 3667777777666554421 22222 3222 356777762 478999998654332222 124678
Q ss_pred eeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEEE
Q 008393 457 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMT 534 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~ 534 (567)
|++++-- +| +|+++-..+|++|++...+... ....... .+..+.....++++++|.....|.++ +...++...
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 8888754 34 5555555689999996543212 1111111 12233344457889999988877665 444555443
Q ss_pred e--ccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 535 L--TAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 535 ~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+ ..+..+++++.|-.+ ..++.+..+|.|.+.
T Consensus 963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 3 345567888888655 467778889988875
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0084 Score=58.15 Aligned_cols=195 Identities=8% Similarity=0.012 Sum_probs=116.6
Q ss_pred CCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-------------CcEEEEECC
Q 008393 339 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------GEIRYWSIN 403 (567)
Q Consensus 339 p~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-------------g~I~iwd~~ 403 (567)
.++.+|+.... ++.|...+.+. .....+... . +--++++++.++++...+ ..|+..++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 45666666542 45555555543 333333321 1 234577888888776654 468888888
Q ss_pred CCeeeEEEeCCeeEEEEecCCCEEEEEE----CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eE
Q 008393 404 NGSCTRVFKGGTAQMRFQPHLGRYLAAA----AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SV 477 (567)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I 477 (567)
..+........ ...++++++.++... ....|+..++...... .+..+.. ..|+++++.|+..+.+ .|
T Consensus 97 g~~~~~l~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 97 GHGSTVLDPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp SCCCEEEECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred CCcceEeecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 77644443333 336778888888876 2457777787754433 3333322 4567788888877764 88
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC--CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
.+.++..+.. +.+ +. .... ..++|++.+|+..... ..|+.-++.......+... .+ ..|+|++++|.
T Consensus 170 y~~~l~g~~~-~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy 238 (302)
T 3s25_A 170 YRYDTASQSE-ALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIF 238 (302)
T ss_dssp EEEETTTTEE-EEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEE
T ss_pred EEEECCCCCE-EEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEE
Confidence 8888865421 222 21 2222 3466999999887654 3788888887765554422 22 33666676665
Q ss_pred EE
Q 008393 556 SA 557 (567)
Q Consensus 556 s~ 557 (567)
-+
T Consensus 239 ~~ 240 (302)
T 3s25_A 239 YQ 240 (302)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0093 Score=59.63 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=88.0
Q ss_pred CCeEEEEECCCCeEEEEecCC----CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCC---------ceEEEeec---
Q 008393 433 ENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG---------ECVHELSC--- 496 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~---------~~i~~~~~--- 496 (567)
++.|+.-++......+.++.. -..|..+..+|+|++||..+...|.|..+..+... .....+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 456666665533222222221 23678899999999999999889999998733210 11223332
Q ss_pred ---CCCceEEEEEeCC---CCeEEEEEcCCeEEEEECCCCcE--E---------EeccccCCeeEEEEecCCCEEEEEE-
Q 008393 497 ---NGNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENKT--M---------TLTAHEGLIAALAVSTETGYVASAS- 558 (567)
Q Consensus 497 ---~~~~i~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~~--~---------~~~~h~~~V~~l~~spdg~~l~s~s- 558 (567)
...+|..+.|||- +..|++-..|+.|++||+..... . ........|.+++|..++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 2467999999995 46899999999999999986321 1 1122336789999999876666644
Q ss_pred -CCCcEE
Q 008393 559 -HDKFVK 564 (567)
Q Consensus 559 -~Dg~I~ 564 (567)
..|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 777775
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.015 Score=56.21 Aligned_cols=206 Identities=11% Similarity=0.082 Sum_probs=105.7
Q ss_pred eEEEEeC--CCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeEEEeC
Q 008393 343 RLATSSF--DKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 343 ~l~s~s~--dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~d----g~I~iwd~~~~~~~~~~~~ 413 (567)
+++.|+. ...+.+||..+... ..+. ........+.+ ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSW--TDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEE--EECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCCCceEEEecCCCCCE--ecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 4555654 35688999886332 2221 11111122222 34577677754 6789999998875544221
Q ss_pred C----eeEEEEecCCCEEEEEECC------CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEe---------
Q 008393 414 G----TAQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS--------- 473 (567)
Q Consensus 414 ~----~~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s--------- 473 (567)
. ...++ ..++..++.++.+ ..+.+||..+.+-...-...... -.+++. -++++++.|+
T Consensus 89 p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 89 PTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred CccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1 11122 2244455555544 46999999887543321111111 112222 3566666665
Q ss_pred -CCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEecccc---CCeeE
Q 008393 474 -EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHE---GLIAA 544 (567)
Q Consensus 474 -~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~---~~V~~ 544 (567)
.+.+.+||+.+. ....+..+...... .+++.. +++.++.|+.+ ..+.+||+.+.+...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~-~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATE-TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTT-EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCC-eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 235889998764 11222222111111 122222 55666666543 47899999988766443221 12222
Q ss_pred EEEecCCCEEEEEECC
Q 008393 545 LAVSTETGYVASASHD 560 (567)
Q Consensus 545 l~~spdg~~l~s~s~D 560 (567)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 333 67788888865
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0072 Score=58.37 Aligned_cols=209 Identities=13% Similarity=0.055 Sum_probs=104.3
Q ss_pred CCeEEEEe-CC-----CcEEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCe
Q 008393 341 MPRLATSS-FD-----KTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGS 406 (567)
Q Consensus 341 ~~~l~s~s-~d-----g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~ 406 (567)
+.+++.|+ .+ ..+.+||+.+... ..+.. ..... +++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEW--SFLPSITRKRRYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEE--EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeE--EeCCCCChhhccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 34555555 22 3588888876322 22211 11111 22222 34577677754 469999998876
Q ss_pred ---eeEEEe--CC--eeEEEEecCCCEEEEEEC-----CCeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEE
Q 008393 407 ---CTRVFK--GG--TAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 407 ---~~~~~~--~~--~~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~ 472 (567)
....-. .. ...+.. .++..++.++. ...+.+||+.+.+-.. .+...... .+++. -++++++.|
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~G 166 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLG 166 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEEC
T ss_pred CCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEEC
Confidence 433321 11 111222 23444444443 2478999988865332 22211111 22222 266777776
Q ss_pred eC------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccC-
Q 008393 473 SE------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEG- 540 (567)
Q Consensus 473 s~------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~- 540 (567)
+. +.+.+||+.+. ....+..+.........+. -++..++.|+.+ ..|.+||+.+.+...+.....
T Consensus 167 G~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp CBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 53 25889998764 1122222221111112222 255666666654 479999999887665432211
Q ss_pred -CeeEEEEecCCCEEEEEECCC
Q 008393 541 -LIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 541 -~V~~l~~spdg~~l~s~s~Dg 561 (567)
.-.+++ .-++++++.|+.++
T Consensus 244 r~~~~~~-~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 244 RCYVGAT-VLRGRLYAIAGYDG 264 (301)
T ss_dssp CBSCEEE-EETTEEEEECCBCS
T ss_pred ccceeEE-EECCEEEEEcCcCC
Confidence 111222 23677777777653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0087 Score=58.12 Aligned_cols=227 Identities=10% Similarity=0.023 Sum_probs=114.1
Q ss_pred CCCCeEEEEeCC----CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeC----C-----CcEEEEEcCCC
Q 008393 297 SDGKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF----D-----KTVRVWDADNP 361 (567)
Q Consensus 297 ~dg~~lasg~~d----g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~----d-----g~I~iwd~~~~ 361 (567)
-++.+++.|+.+ ..+.+||..+.+.... +......-..+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355677777642 4688999887654332 1111111122222 5666666665 2 45888998763
Q ss_pred CceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEe--CC--eeEEEEecCCCEEEE
Q 008393 362 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GG--TAQMRFQPHLGRYLA 429 (567)
Q Consensus 362 ~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~ 429 (567)
.. ..+. ........+.+ + ..+++.|+.+ ..+.+||+.+.+....-. .. ...+... ++..++.
T Consensus 101 ~W--~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~ 174 (308)
T 1zgk_A 101 QW--SPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAV 174 (308)
T ss_dssp EE--EECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE
T ss_pred eE--eECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEE
Confidence 22 2221 11111122222 3 4566666543 468899998876543321 11 1112222 4444455
Q ss_pred EECC-----CeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeC------CeEEEEeCCCCCCCceEEEeecC
Q 008393 430 AAAE-----NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 430 ~~~d-----g~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~------d~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
++.+ ..+.+||+.+.+-...-..... .-.+++.. ++++++.|+. +.+.+||+.+.. ...+..+...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 252 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR 252 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC
Confidence 5443 5689999988754322111111 11222222 6677777754 258999987641 1112112111
Q ss_pred CCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEe
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTL 535 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~ 535 (567)
..... ++. -++..++.|+.+ ..|.+||+.+.+...+
T Consensus 253 r~~~~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 253 RSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ccceE-EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 11122 222 256666666643 4789999988776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.037 Score=53.75 Aligned_cols=225 Identities=8% Similarity=0.017 Sum_probs=113.6
Q ss_pred eEEEEeCCCcEEEEeCCCCeeee-eecccCccEEEEEECCCCCeEEEEeC----C-------CcEEEEEcCCCCceeEEe
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF----D-------KTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~-~l~~h~~~V~~i~fsp~~~~l~s~s~----d-------g~I~iwd~~~~~~~~~~~ 368 (567)
+++.|+ ..+.+||..+.+-.. .+..........+...++..++.|+. + ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 678999998877543 12212222333334457778888873 1 1277888876322 222
Q ss_pred ccCCCcE--EEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeEEEe--CCe-eEEEEecCCCEEEEEEC---
Q 008393 369 MGHSASV--MSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA--- 432 (567)
Q Consensus 369 ~~h~~~V--~~l~~~p~~~~li~s~~~d--------g~I~iwd~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~--- 432 (567)
.....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+....-. ... ...+...++..++.++.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence 2111111 122222 35666677632 468999998876443221 111 11112233444555554
Q ss_pred ---CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 433 ---ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 433 ---dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
-+.+.+||+.+.+-...-...... -.+++. -++++++.|+.+ .+.+||+.+. ....+..+.......
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~- 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSL- 237 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccce-
Confidence 247999999887543221111111 122222 266777777643 4888998764 112222221111112
Q ss_pred EEEEeCCCCeEEEEEcC--------------CeEEEEECCCCcEEEe
Q 008393 503 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL 535 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 535 (567)
+++. -++..++.|+.+ ..|.+||+.+.+...+
T Consensus 238 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2222 255666667653 2588999988876544
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=97.25 E-value=4.6e-05 Score=79.04 Aligned_cols=6 Identities=33% Similarity=0.252 Sum_probs=2.7
Q ss_pred CCHHHH
Q 008393 2 LTPQHQ 7 (567)
Q Consensus 2 ~~~~~~ 7 (567)
+++..|
T Consensus 285 ~s~e~~ 290 (449)
T 3iot_A 285 LTDEGL 290 (449)
T ss_dssp SSHHHH
T ss_pred cCHHHH
Confidence 345533
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.025 Score=54.54 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=104.2
Q ss_pred eEEEEeCC----CcEEEEEcCCCCceeEEeccCCCc--EEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEE
Q 008393 343 RLATSSFD----KTVRVWDADNPGYSLRTFMGHSAS--VMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVF 411 (567)
Q Consensus 343 ~l~s~s~d----g~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~ 411 (567)
+++.|+.+ ..+.+||+.+... ..+...... -.+++.. ++.+++.|+.+ ..+.+||..+.+....-
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 44445432 3478888876322 222111110 1122222 35577677654 35889999887755432
Q ss_pred eCC----eeEEEEecCCCEEEEEECC-----CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC-------
Q 008393 412 KGG----TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE------- 474 (567)
Q Consensus 412 ~~~----~~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~------- 474 (567)
... ...++. .++..++.++.+ ..+.+||+.+.+-...-...... -.+++. -++++++.|+.
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcc
Confidence 211 111222 244555666654 36889999887544321111111 122222 25666666653
Q ss_pred -CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC--eeEEE
Q 008393 475 -DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAALA 546 (567)
Q Consensus 475 -d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~--V~~l~ 546 (567)
+.+.+||+.+.. ...+..+....... +++. -++..++.|+.+ ..+.+||+.+.+...+...... -.+++
T Consensus 172 ~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNE-WTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCc-EEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 258899987641 12222222111112 2222 256666666654 3799999998876654322211 11222
Q ss_pred EecCCCEEEEEECCC
Q 008393 547 VSTETGYVASASHDK 561 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg 561 (567)
.-++++++.|+.++
T Consensus 249 -~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 249 -AVNGLLYVVGGDDG 262 (302)
T ss_dssp -EETTEEEEECCBCS
T ss_pred -EECCEEEEECCcCC
Confidence 23677778887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.089 Score=51.04 Aligned_cols=224 Identities=11% Similarity=0.048 Sum_probs=110.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeee-ecccCccEEEEEECCCCCeEEEEeC----CC-------cEEEEEcCCCCceeEEe
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSF----DK-------TVRVWDADNPGYSLRTF 368 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~-l~~h~~~V~~i~fsp~~~~l~s~s~----dg-------~I~iwd~~~~~~~~~~~ 368 (567)
+++.|+. .+.+||..+.+.... +..........+...++..++.|+. ++ .+.+||..+... ..+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EEC
Confidence 4444543 478899887765441 1111122223333456778888873 12 167788876322 222
Q ss_pred ccCCC--cEEEEEEcCCCCeEEEEEeCC-------CcEEEEECCCCeeeEEEeC--Ce--eEEEEecCCCEEEEEEC---
Q 008393 369 MGHSA--SVMSLDFHPNKDDLICSCDGD-------GEIRYWSINNGSCTRVFKG--GT--AQMRFQPHLGRYLAAAA--- 432 (567)
Q Consensus 369 ~~h~~--~V~~l~~~p~~~~li~s~~~d-------g~I~iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~--- 432 (567)
..... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+....-.. .. ..+.. .++..++.++.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDD 170 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESS
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCC
Confidence 11111 11122222 34566677654 3588899988765543211 11 11122 34444455543
Q ss_pred ---CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 433 ---ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 433 ---dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
.+.+.+||+.+.+-...-...... -.+++. -++++++.|+.+ .+.+||+.+.. ...+..+.......
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~- 247 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSI- 247 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSC-
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccce-
Confidence 246999999887543321111111 122333 256777777532 47789987642 12222222111111
Q ss_pred EEEEeCCCCeEEEEEcC--------------CeEEEEECCCCcEEEe
Q 008393 503 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL 535 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 535 (567)
+++ .-++..++.|+.+ ..|.+||+.+.+...+
T Consensus 248 ~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 2345666666543 4688999988776644
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.024 Score=56.22 Aligned_cols=227 Identities=10% Similarity=0.003 Sum_probs=112.9
Q ss_pred CCCeEEEEeCC-CcEEEEeCCC--Ce--eeeeec-ccCccEEEEEECCCCCeEEEEeC-C---------CcEEEEEcCCC
Q 008393 298 DGKLLATGGHD-KKAVLWHTDT--LK--SKTNLE-EHSSLITDVRFSPSMPRLATSSF-D---------KTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~~d-g~I~vwd~~~--~~--~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~-d---------g~I~iwd~~~~ 361 (567)
++++++.|+.+ ..+.+||..+ .+ .+..+. .....-.++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66677777643 5788999864 22 222222 11112222223 4666677665 2 45889998863
Q ss_pred CceeEEecc---C-CCcEEEEEEcCCCCeEEEEEeCC---------------------------------------CcEE
Q 008393 362 GYSLRTFMG---H-SASVMSLDFHPNKDDLICSCDGD---------------------------------------GEIR 398 (567)
Q Consensus 362 ~~~~~~~~~---h-~~~V~~l~~~p~~~~li~s~~~d---------------------------------------g~I~ 398 (567)
.. ..+.. . .....++. . ++.+++.|+.+ ..+.
T Consensus 97 ~W--~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 97 SW--VKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp EE--EECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred cE--EECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 32 22211 1 11122222 2 35677777754 5799
Q ss_pred EEECCCCeeeEEEeCC----e-eEEEEecCCCEEEEEEC------CCeEEEEEC--CCCeEEE--EecCCCCCeeEEEEc
Q 008393 399 YWSINNGSCTRVFKGG----T-AQMRFQPHLGRYLAAAA------ENVVSILDA--ETQACRL--SLQGHTKPIDSVCWD 463 (567)
Q Consensus 399 iwd~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~~~~------dg~I~i~d~--~~~~~~~--~~~~h~~~V~~l~~s 463 (567)
+||+.+.+....-... . ..++. .++..++.++. ...+.+||+ .+.+-.. .+..........+..
T Consensus 172 ~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 172 SFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred EEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 9999987755443211 1 12222 23344444442 346778887 4433221 121111111221223
Q ss_pred CCCCEEEEEeC-----------------------CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 464 PSGELLASVSE-----------------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 464 p~g~~l~s~s~-----------------------d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
.++++++.|+. ..+.+||+.+. ....+..+........ ++..+++.++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYGV--SLPWNNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSE--EEEETTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCcccce--eEEeCCEEEEEeeeCC
Confidence 35677777662 14778998764 2334444333222222 2334677778888653
Q ss_pred ------eEEEEECCCCcEEEe
Q 008393 521 ------SLELWNMSENKTMTL 535 (567)
Q Consensus 521 ------~I~iwd~~~~~~~~~ 535 (567)
.|.++++++++.+..
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCEeeeEEEEEEcCcEeEee
Confidence 577789998887743
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.11 Score=50.93 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=104.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEE--cCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEeCC---
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDF--HPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGG--- 414 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~--~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~~~--- 414 (567)
..++.++.||.|.-+|..+ ++.+-.+... ..++....- .+.+..+++.. ..||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3788999999999999887 5554444432 122222110 01122444343 58999999999988655444321
Q ss_pred -eeEEEEe-----------cCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC--C-----eeEEEEc-----CCCCEEE
Q 008393 415 -TAQMRFQ-----------PHLGRYLAAAAENVVSILDAETQACRLSLQGHTK--P-----IDSVCWD-----PSGELLA 470 (567)
Q Consensus 415 -~~~~~~~-----------~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~--~-----V~~l~~s-----p~g~~l~ 470 (567)
...+... ..++.+++++.++.+...|+++|+.+..+..... . ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112211 1568889999999999999999999999874321 0 1111111 1235677
Q ss_pred EEeCC-eEEEEeCCCCCCCce-EEEeecCCCc--e-EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE
Q 008393 471 SVSED-SVRVWTVGSGSEGEC-VHELSCNGNK--F-HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 534 (567)
Q Consensus 471 s~s~d-~I~iwd~~~~~~~~~-i~~~~~~~~~--i-~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 534 (567)
.+..+ .+.+.+ +++..... +......... + ..-.++.++.+ ++++.||.|+.+|..++..+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77766 677766 44421110 1111110000 0 00001123554 557888888888888777653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.084 Score=51.14 Aligned_cols=209 Identities=9% Similarity=-0.024 Sum_probs=103.6
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-----C------CcEEEEECCCCeeeEEE
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----D------GEIRYWSINNGSCTRVF 411 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-----d------g~I~iwd~~~~~~~~~~ 411 (567)
+++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||..+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 468999998754433222211122222222233 446666663 1 13788999887654321
Q ss_pred e--CCe--eEEEEecCCCEEEEEECC--------CeEEEEECCCCeEEEEecCCCCCe-eEEEEcCCCCEEEEEeC----
Q 008393 412 K--GGT--AQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPI-DSVCWDPSGELLASVSE---- 474 (567)
Q Consensus 412 ~--~~~--~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~---- 474 (567)
. ... ..++.. ++..++.++.+ ..+.+||..+.+-...-....... .+++. -++++++.|+.
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 1 111 111221 33444444421 468999998875332211111111 22222 45667777765
Q ss_pred ---CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEeccccC--CeeE
Q 008393 475 ---DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEG--LIAA 544 (567)
Q Consensus 475 ---d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~--~V~~ 544 (567)
+.+.+||+.+.. ...+..+........ ++ .-+++.++.|+.++ .+.+||+.+.+...+..... .-.+
T Consensus 162 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 162 KCLNKMCVYDPKKFE-WKELAPMQTARSLFG-AT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp CBCCCEEEEETTTTE-EEECCCCSSCCBSCE-EE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred cccceEEEEeCCCCe-EEECCCCCCchhceE-EE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 258899987641 111211211111112 22 22666777777654 68999999887665432211 1112
Q ss_pred EEEecCCCEEEEEECC
Q 008393 545 LAVSTETGYVASASHD 560 (567)
Q Consensus 545 l~~spdg~~l~s~s~D 560 (567)
++. -++++++.|+.+
T Consensus 239 ~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEE-ETTEEEEEEEEE
T ss_pred EEE-ECCEEEEECCcc
Confidence 222 366777778764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.24 Score=51.11 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=141.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeeccc-------------------------CccEE--EEEEC---CCCCeEEEEeC-
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEH-------------------------SSLIT--DVRFS---PSMPRLATSSF- 349 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h-------------------------~~~V~--~i~fs---p~~~~l~s~s~- 349 (567)
.|.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+. -||+||+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3568889999999999988887766421 01111 12222 15677877764
Q ss_pred CCcEEEEEcCCCCceeEEec-cCCCcEEEEEEc--CCCCeEEEEEe------CCCcEE---------E---EECCCCeee
Q 008393 350 DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFH--PNKDDLICSCD------GDGEIR---------Y---WSINNGSCT 408 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~--p~~~~li~s~~------~dg~I~---------i---wd~~~~~~~ 408 (567)
+..|...+++. -++-..+. .....+..++|- |+..++++.+- .||... + .|..+.+..
T Consensus 152 n~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 152 NSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 56788888876 44433332 345678888886 67666664331 133211 1 122222211
Q ss_pred EE--EeCCeeEEEEecCCCEEEEEECC---------------CeEEEEE-------------------------CCC---
Q 008393 409 RV--FKGGTAQMRFQPHLGRYLAAAAE---------------NVVSILD-------------------------AET--- 443 (567)
Q Consensus 409 ~~--~~~~~~~~~~~~~~~~l~~~~~d---------------g~I~i~d-------------------------~~~--- 443 (567)
.. ..+....+...+++++.++.+.+ ..+.++| .+.
T Consensus 231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 11 11222223345555665555532 1244444 332
Q ss_pred -CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC---------CCCce-EEEeecCCCceEEEEEeCCC
Q 008393 444 -QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG---------SEGEC-VHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 444 -~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~---------~~~~~-i~~~~~~~~~i~~~~~sp~~ 510 (567)
+..+..+-.-......+.++|||+++++++.- +|.++|++.. ....+ +.+.. -+-.....+|.++|
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG 389 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC
Confidence 11111111111234568899999999998865 8999999742 11122 22333 35556778999999
Q ss_pred CeEEEEEcCCeEEEEECCCC----------cEE-EeccccCCeeEEEE------ecCCCEEEEEE
Q 008393 511 PSLLVIGCYQSLELWNMSEN----------KTM-TLTAHEGLIAALAV------STETGYVASAS 558 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~----------~~~-~~~~h~~~V~~l~~------spdg~~l~s~s 558 (567)
....+..-|..|.-|++... ..+ .+..|-.+ -.+.- .++|++|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 54455557899999998653 222 34444332 22222 57899998875
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.11 Score=50.30 Aligned_cols=200 Identities=11% Similarity=0.042 Sum_probs=98.5
Q ss_pred EEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeC----CC-------cEEEEECCCCeeeEEEe--CC--ee
Q 008393 353 VRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDG----DG-------EIRYWSINNGSCTRVFK--GG--TA 416 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~----dg-------~I~iwd~~~~~~~~~~~--~~--~~ 416 (567)
+.+||..+........... ...-.+++ ..+ +.+++.|+. ++ .+.+||..+.+....-. .. ..
T Consensus 26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQIPRNHSSIV-TQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEETTTTEEEEEEECTTSCSSEEEEE-CSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred eEEECCCCCceecccCCccCCccceEEE-EEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 7889988744333222211 11222333 233 456667773 12 27788988876543311 11 11
Q ss_pred EEEEecCCCEEEEEECC-------CeEEEEECCCCeEEEEecCCCCCe-eEEEEcCCCCEEEEEeC-------CeEEEEe
Q 008393 417 QMRFQPHLGRYLAAAAE-------NVVSILDAETQACRLSLQGHTKPI-DSVCWDPSGELLASVSE-------DSVRVWT 481 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~d-------g~I~i~d~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~-------d~I~iwd 481 (567)
.++. .++..++.++.+ ..+.+||..+.+-...-....... .+++. .++++++.|+. +.+.+||
T Consensus 104 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 104 GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEc
Confidence 2222 244555666643 368899998875443211111111 12222 46677676653 1589999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC--eeEEEEecCCCEE
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYV 554 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~--V~~l~~spdg~~l 554 (567)
+.+.. ...+..+....... +++. -++..++.|+.+ ..+.+||+.+.+...+.....+ -.+++ .-+++++
T Consensus 182 ~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~ 257 (318)
T 2woz_A 182 PKKGD-WKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLY 257 (318)
T ss_dssp TTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEE
T ss_pred CCCCE-EEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEE
Confidence 87641 12222222111111 2222 256666666643 3688999998876644322211 11222 2356777
Q ss_pred EEEECC
Q 008393 555 ASASHD 560 (567)
Q Consensus 555 ~s~s~D 560 (567)
+.||.+
T Consensus 258 v~GG~~ 263 (318)
T 2woz_A 258 AIGGFA 263 (318)
T ss_dssp EECCBC
T ss_pred EECCee
Confidence 777754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.59 Score=47.90 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=60.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEecc------CCCcEEEEEEcCC---CCeEEEEEeC------
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMG------HSASVMSLDFHPN---KDDLICSCDG------ 393 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~------h~~~V~~l~~~p~---~~~li~s~~~------ 393 (567)
...+.|+|.|+|+++++-...+.|++++..+... .+..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567999999998666654445788887654222 1222221 2356789999996 5666655542
Q ss_pred ------CCcEEEEECCCC--e-----eeE-EEe----CCeeEEEEecCCCEEEEEEC
Q 008393 394 ------DGEIRYWSINNG--S-----CTR-VFK----GGTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 394 ------dg~I~iwd~~~~--~-----~~~-~~~----~~~~~~~~~~~~~~l~~~~~ 432 (567)
...|..|+.... . .+. .+. .....+.|.+++..+++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1 111 122 12577899999876666543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.024 Score=56.16 Aligned_cols=217 Identities=8% Similarity=0.002 Sum_probs=100.5
Q ss_pred CCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCC---CcEEEEEEcCCCCeEEEEEeC-C---------CcEEEEECCCC
Q 008393 340 SMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHS---ASVMSLDFHPNKDDLICSCDG-D---------GEIRYWSINNG 405 (567)
Q Consensus 340 ~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~li~s~~~-d---------g~I~iwd~~~~ 405 (567)
++.+++.|+. ...+.+||+.........+..-. ..-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4445555543 34588888863112222222111 111122222 2456666665 2 46899999887
Q ss_pred eeeEEEe---CC-eeEEEEecCCCEEEEEECC---------------------------------------CeEEEEECC
Q 008393 406 SCTRVFK---GG-TAQMRFQPHLGRYLAAAAE---------------------------------------NVVSILDAE 442 (567)
Q Consensus 406 ~~~~~~~---~~-~~~~~~~~~~~~l~~~~~d---------------------------------------g~I~i~d~~ 442 (567)
+....-. .. ....+...++..++.++.+ +.+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 6543321 11 1111222444555556543 589999998
Q ss_pred CCeEEE--EecCCCCCe-eEEEEcCCCCEEEEEeC-------CeEEEEeC--CCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 443 TQACRL--SLQGHTKPI-DSVCWDPSGELLASVSE-------DSVRVWTV--GSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 443 ~~~~~~--~~~~h~~~V-~~l~~sp~g~~l~s~s~-------d~I~iwd~--~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
+.+-.. .+.. ...- .+++.. ++++++.|+. +.+.+||+ .+. ....+..+..........+...++
T Consensus 177 ~~~W~~~~~~p~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 177 TQQWSYAGESPW-YGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTEEEEEEECSS-CCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCcEEECCCCCC-CCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccceEEEECC
Confidence 864332 2221 1112 333333 5666666652 25777877 322 111111121111111111233355
Q ss_pred CeEEEEEcC----------------------CeEEEEECCCCcEEEeccccC-CeeEEEEecCCCEEEEEECCC
Q 008393 511 PSLLVIGCY----------------------QSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 511 ~~l~~~~~d----------------------g~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg 561 (567)
..++.|+.+ ..+.+||+.+.+...+..... .....++.-++++++.||.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence 656666532 257899998876553321111 111122334678888888653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.063 Score=51.91 Aligned_cols=212 Identities=10% Similarity=0.017 Sum_probs=102.7
Q ss_pred CCCeEEEEeC----CCcEEEEEcCCCCceeEEeccCCC--cEEEEEEcCCCCeEEEEEeC----C-----CcEEEEECCC
Q 008393 340 SMPRLATSSF----DKTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDG----D-----GEIRYWSINN 404 (567)
Q Consensus 340 ~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~~p~~~~li~s~~~----d-----g~I~iwd~~~ 404 (567)
++.+++.|+. -..+.+||..+... ..+..... .-.+++.. ++.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3445555553 13578888876322 22211110 01122222 3456666665 2 4688999988
Q ss_pred CeeeEEEeC--C--eeEEEEecCCCEEEEEEC-----CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEeC
Q 008393 405 GSCTRVFKG--G--TAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVSE 474 (567)
Q Consensus 405 ~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~ 474 (567)
.+....-.. . ...+.. .++..++.++. ...+.+||..+.+-...-...... -.+++.. ++++++.|+.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 765433211 1 111222 23344444443 247899999887543321111111 1122222 5677776653
Q ss_pred C------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC--
Q 008393 475 D------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL-- 541 (567)
Q Consensus 475 d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~-- 541 (567)
+ .+.+||+.+.. ...+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+...+.....+
T Consensus 178 ~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNE-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCe-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 2 58899987641 1111112111111222222 56666666654 4799999998876644322111
Q ss_pred eeEEEEecCCCEEEEEECCC
Q 008393 542 IAALAVSTETGYVASASHDK 561 (567)
Q Consensus 542 V~~l~~spdg~~l~s~s~Dg 561 (567)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 3677777887653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.01 Score=58.27 Aligned_cols=143 Identities=8% Similarity=0.009 Sum_probs=84.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeeccc-CccEEEEEE--CC-CCCeEEEE-eCCCcEEEEEcCCCCceeEEecc----
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRF--SP-SMPRLATS-SFDKTVRVWDADNPGYSLRTFMG---- 370 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~f--sp-~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~---- 370 (567)
.++++++.||.|.-+|.++|+.+.+++.. ..++....- .+ ++..++.. ..||.|..++..+ +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 37888999999999999999999998754 122222110 01 22233333 5799999999876 332222210
Q ss_pred CCCcEEE---EEE-cC---CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee----------EEEEe-----cCCCEEE
Q 008393 371 HSASVMS---LDF-HP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----------QMRFQ-----PHLGRYL 428 (567)
Q Consensus 371 h~~~V~~---l~~-~p---~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~----------~~~~~-----~~~~~l~ 428 (567)
...++.. ..+ .+ .....+++|+.+|.+...|+.+|+.+..+..... +.... ..++.++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1122221 000 00 0234667999999999999999999999875421 11111 1235677
Q ss_pred EEECCCeEEEEECCCC
Q 008393 429 AAAAENVVSILDAETQ 444 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~ 444 (567)
.+..+..+.+.+ +++
T Consensus 170 ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 170 IGKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEEECEECC-TTS
T ss_pred EecceEEEEEEC-CCC
Confidence 777777777766 444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.13 Score=59.08 Aligned_cols=217 Identities=10% Similarity=0.187 Sum_probs=126.2
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
....|.|.|+.++..+..-.- .--+...+|..+.||.=. ..++.|+|+++ +..+..+.- ...|.-=.|..+..
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~-k~klks~~~-~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLNT- 118 (1630)
T ss_pred CCceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHH-hhhhccccc-CCCceEEEecCCCe-
Confidence 344788999887654422110 112335677777666654 67899999998 444444442 34566667765432
Q ss_pred EEEEEeCCCcEEEEECCCC-eeeEEEeC-------CeeEEEEecCCCEEEEEEC-------CCeEEEEECCCCeEEEEec
Q 008393 387 LICSCDGDGEIRYWSINNG-SCTRVFKG-------GTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~-~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 451 (567)
+.+++ +..|+-|++... .+++.|.. .+...+.+++..+++..+- .|.+.+|..+.+.. ..+.
T Consensus 119 l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ie 195 (1630)
T 1xi4_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE 195 (1630)
T ss_pred eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhh
Confidence 33222 668999999742 23333321 2333456777777765543 47888888876532 2345
Q ss_pred CCCCCeeEEEEcC---CCCEEEEEeC---C-eEEEEeCCCC---CCC---ceEEEee---cCCCceEEEEEeCCCCeEEE
Q 008393 452 GHTKPIDSVCWDP---SGELLASVSE---D-SVRVWTVGSG---SEG---ECVHELS---CNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 452 ~h~~~V~~l~~sp---~g~~l~s~s~---d-~I~iwd~~~~---~~~---~~i~~~~---~~~~~i~~~~~sp~~~~l~~ 515 (567)
||......+.+.. ...+++.+.. + .++|.++... ... +.+..+- ....-..++..++....++.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 5544433333221 1224443332 3 7888888543 100 1111111 11333456778888899999
Q ss_pred EEcCCeEEEEECCCCcEE
Q 008393 516 IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~ 533 (567)
.+..|.|++||+.++..+
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 999999999999999866
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.46 Score=47.57 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=90.9
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-------CeeEEEEecCCCEEEEEECCCeEEEEECCCCe-------
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQA------- 445 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~------- 445 (567)
.+.++..+++.- ++.||.-++.....-+.++. .+..+..+|+|..++.. .+..|.|..+..+.
T Consensus 28 ~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccc
Confidence 344556666433 57888888775443444332 35678899986666555 56678887776221
Q ss_pred -----EEEEecC------CCCCeeEEEEcCC---CCEEEEEeCC-eEEEEeCCCCCC-CceE------EEeecCCCceEE
Q 008393 446 -----CRLSLQG------HTKPIDSVCWDPS---GELLASVSED-SVRVWTVGSGSE-GECV------HELSCNGNKFHS 503 (567)
Q Consensus 446 -----~~~~~~~------h~~~V~~l~~sp~---g~~l~s~s~d-~I~iwd~~~~~~-~~~i------~~~~~~~~~i~~ 503 (567)
..+.+.- ...+|..+.|+|- +..|++-..| .|++||+..... +..+ ..+......+.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1122221 2567999999994 4578888888 999999986322 1111 111122356889
Q ss_pred EEEeCCCCeEEEEE--cCCeEEEE
Q 008393 504 CVFHPTYPSLLVIG--CYQSLELW 525 (567)
Q Consensus 504 ~~~sp~~~~l~~~~--~dg~I~iw 525 (567)
++|..++-.|++.. ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999888888866 77888765
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.87 Score=45.46 Aligned_cols=254 Identities=8% Similarity=-0.041 Sum_probs=119.7
Q ss_pred CCCeEEEEEcC--CCCeEEEEeCCC----cEEEEeCCCCeeeeeec------c--------cCccEEEEEECCC--CCeE
Q 008393 287 TSKVICCHFSS--DGKLLATGGHDK----KAVLWHTDTLKSKTNLE------E--------HSSLITDVRFSPS--MPRL 344 (567)
Q Consensus 287 ~~~V~~l~~s~--dg~~lasg~~dg----~I~vwd~~~~~~~~~l~------~--------h~~~V~~i~fsp~--~~~l 344 (567)
...|.+|+++| ++.+++ ++..| .|... .+.++.-..+. . +...|.+|++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35689999998 444444 44444 34333 22232211111 1 1135888999872 4566
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEecc-------------------CCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCC
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMG-------------------HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~-------------------h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~ 404 (567)
+.+...+.|... ...+.....+.. ....|.+|.+.|.. ..++ .+..++.|...+-.
T Consensus 132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~-vg~~~ggl~~s~Dg- 207 (394)
T 3b7f_A 132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY-IGMSSGGVFESTDA- 207 (394)
T ss_dssp EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE-EEEETBEEEEESST-
T ss_pred EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE-EEECCCCEEEECCC-
Confidence 666655544433 333333333221 12458899998743 3444 34334444443222
Q ss_pred CeeeEEEe----------------CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecC--CC---CCeeEEEE
Q 008393 405 GSCTRVFK----------------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQG--HT---KPIDSVCW 462 (567)
Q Consensus 405 ~~~~~~~~----------------~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~---~~V~~l~~ 462 (567)
++.-..+. ..+..+.+.+.. +.++++.. +.|...+-... ....+.. .. ..+.+|++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~G~-tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRREG-VWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETTTT-EEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCCCC-cceECCCCCCCCCccceEEEEE
Confidence 22211111 125667788763 56666654 44555543322 2222221 11 34567888
Q ss_pred cC-CCCEEEEEeC-----------C-eEEEEeCCC-CCCCceEEE-eecCCC----ceEEEEEeCCC-CeEEEEEcCCeE
Q 008393 463 DP-SGELLASVSE-----------D-SVRVWTVGS-GSEGECVHE-LSCNGN----KFHSCVFHPTY-PSLLVIGCYQSL 522 (567)
Q Consensus 463 sp-~g~~l~s~s~-----------d-~I~iwd~~~-~~~~~~i~~-~~~~~~----~i~~~~~sp~~-~~l~~~~~dg~I 522 (567)
+| +...|+.+.. + ...||.... +.....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 76 3333443321 2 344555443 222222221 111000 11356788753 457777666666
Q ss_pred EEEECCCCcEEEeccccCCeeEEEEe
Q 008393 523 ELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 523 ~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
+.-+-.......+..+-..+.+|.|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 65433222233444444567777764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.16 Score=55.32 Aligned_cols=221 Identities=5% Similarity=-0.019 Sum_probs=114.0
Q ss_pred CCCCeEEEEeCC----CcEEEEEcCCCCceeEEec------cCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEEC
Q 008393 339 PSMPRLATSSFD----KTVRVWDADNPGYSLRTFM------GHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSI 402 (567)
Q Consensus 339 p~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~ 402 (567)
-++..++.|+.+ ..+.+||..+.......+. .....-.+++....++.+++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 4588999887443322201 1111112333333134566677653 35889999
Q ss_pred CCCeeeEEEe--CC--eeEEEEecCCCEEEEEECCC--eEEEEECCCCeEEEEec-----CCCCCeeEEEEcCC-CCEEE
Q 008393 403 NNGSCTRVFK--GG--TAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQ-----GHTKPIDSVCWDPS-GELLA 470 (567)
Q Consensus 403 ~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~-----~h~~~V~~l~~sp~-g~~l~ 470 (567)
.+.+....-. .. ...++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8876544321 11 12223323666667766543 79999998875433211 11122233555555 66777
Q ss_pred EEeC--------CeEEEEeCCCCCC-----CceEEEeecCCCceEEEEEeCCCCeEEEEEc--------CCeEEEEECCC
Q 008393 471 SVSE--------DSVRVWTVGSGSE-----GECVHELSCNGNKFHSCVFHPTYPSLLVIGC--------YQSLELWNMSE 529 (567)
Q Consensus 471 s~s~--------d~I~iwd~~~~~~-----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~--------dg~I~iwd~~~ 529 (567)
.|+. +.+.+||+.+..- ...+.........-.+++...++..+++||. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7764 2588999987641 1222221111112223334444666667764 24699999998
Q ss_pred CcEEEeccccC--------Ce-eEEEEecCCCEEEEEEC
Q 008393 530 NKTMTLTAHEG--------LI-AALAVSTETGYVASASH 559 (567)
Q Consensus 530 ~~~~~~~~h~~--------~V-~~l~~spdg~~l~s~s~ 559 (567)
.+......... .+ .+.....++++++.||.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 87653221100 00 23333456678777774
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.48 Score=42.95 Aligned_cols=170 Identities=12% Similarity=0.034 Sum_probs=95.7
Q ss_pred CeEEEEEeCCCcEEEEECCCCe------eeEEEe----CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE------EE
Q 008393 385 DDLICSCDGDGEIRYWSINNGS------CTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC------RL 448 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~------~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~------~~ 448 (567)
+.+|++..+| +|+.=....+. ....+. .....++|+|++. |+++ .++.++-.+..+... ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3455566666 66655554443 112222 2567899999655 5555 888888887755111 11
Q ss_pred Eec--CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceE----EEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 449 SLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 449 ~~~--~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.+- +-. ...++.|.++|.+.++ +++.|+-++-.+.....-+ ..-...-..+..+.|.|+|...++. ++.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 111 111 1478999999998887 5568877776432221111 1111122457899999999854444 8876
Q ss_pred EEEECCCCcE------EEec--cccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 523 ELWNMSENKT------MTLT--AHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 523 ~iwd~~~~~~------~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
+-.....+.. .... ......+-+.|.+++.+.+.. +|.|
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5544432221 1111 233345557789998776665 6644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.2 Score=57.58 Aligned_cols=233 Identities=10% Similarity=0.158 Sum_probs=137.0
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH- 371 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h- 371 (567)
.-.+|..+.+|.-. ..++.|||+++...+..+.-.. .|.-=.|-... .|+..+ +..|+-|+++....+++.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 44567667776654 7899999999877766665433 35555665443 344333 3459999998655666666555
Q ss_pred ---CCcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCeeEE---EE--ecCCCEEEEEEC----C
Q 008393 372 ---SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQM---RF--QPHLGRYLAAAA----E 433 (567)
Q Consensus 372 ---~~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~~~----d 433 (567)
...|.....+++.+.++++|- -.|.+.+|..+.+.. ..+.++..+. .. .+....+++-+. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 466777888888888877664 357788888775432 1222222111 11 111223333222 2
Q ss_pred CeEEEEECCCC---eE------EEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 434 NVVSILDAETQ---AC------RLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 434 g~I~i~d~~~~---~~------~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+.++|.++... .. +..+.. -.+-..++..++.-.+++..+.- .|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888887542 11 111111 12223456677766666666666 9999999988 566555555555
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|...+.+....-++.....|.|.-..+.+...+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 555454444444666667777766666655544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.63 E-value=2.3 Score=43.41 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eeecc------cCccEEEEEECCC---CCeEEEEeC-------
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEE------HSSLITDVRFSPS---MPRLATSSF------- 349 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l~~------h~~~V~~i~fsp~---~~~l~s~s~------- 349 (567)
...++|+|.|||+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45579999999987776544457988886555432 22221 2456789999996 555555442
Q ss_pred ------CCcEEEEEcCCCC------ce-eEEec-cCCCcEEEEEEcCCCCeEEEEE
Q 008393 350 ------DKTVRVWDADNPG------YS-LRTFM-GHSASVMSLDFHPNKDDLICSC 391 (567)
Q Consensus 350 ------dg~I~iwd~~~~~------~~-~~~~~-~h~~~V~~l~~~p~~~~li~s~ 391 (567)
...|..|+++... +. +..+. ........|+|.|+|..++.+|
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2346666654321 11 11122 1123478999999987555444
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=95.54 E-value=1.4 Score=47.76 Aligned_cols=238 Identities=8% Similarity=0.014 Sum_probs=122.5
Q ss_pred EEE-EcCCCCeEEEEe-----CCCcEEEEeCCCCeeeee-ec-ccCc------cEEEEEECCCCCeEEEE----------
Q 008393 292 CCH-FSSDGKLLATGG-----HDKKAVLWHTDTLKSKTN-LE-EHSS------LITDVRFSPSMPRLATS---------- 347 (567)
Q Consensus 292 ~l~-~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~-l~-~h~~------~V~~i~fsp~~~~l~s~---------- 347 (567)
.+. ++||+++++.+- .-..|+++|+.+++.+.. +. .-+. ....++|..+...+++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 889998877642 234799999999987642 22 0000 11334776333333332
Q ss_pred eCCCcEEEEEcCCCCc-eeEEeccCCCcE-EEEEEcCCCCe----EEEEEeC---CCcEEEEECCC--CeeeEEEeCCee
Q 008393 348 SFDKTVRVWDADNPGY-SLRTFMGHSASV-MSLDFHPNKDD----LICSCDG---DGEIRYWSINN--GSCTRVFKGGTA 416 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~-~~~~~~~h~~~V-~~l~~~p~~~~----li~s~~~---dg~I~iwd~~~--~~~~~~~~~~~~ 416 (567)
+....|+.|.+-++.. -...+.+....+ .......++.. ++++.+. ...+.+.+... ++..........
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 1234689998876422 223344333333 34445666653 4545432 24566667653 332222222222
Q ss_pred EEEEecCCCEEEEE-----------ECCCeEEEEECCCCe-------EEEE-ecC-CCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 417 QMRFQPHLGRYLAA-----------AAENVVSILDAETQA-------CRLS-LQG-HTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 417 ~~~~~~~~~~l~~~-----------~~dg~I~i~d~~~~~-------~~~~-~~~-h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
.+..... +.+++. ...+.|.++|+.+.. .... +.. ....+..+.|..+ .++++...+
T Consensus 293 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~ 370 (711)
T 4hvt_A 293 TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV 370 (711)
T ss_dssp EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence 2223333 344432 235678899887631 1112 222 2345778888876 455555555
Q ss_pred --eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEE-cC---CeEEEEECCCCcEE
Q 008393 476 --SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CY---QSLELWNMSENKTM 533 (567)
Q Consensus 476 --~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~d---g~I~iwd~~~~~~~ 533 (567)
.|.++++.++. ....+..+.. ...+....+.+++..++... .. ..++.+|+. ++..
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57888876542 1111111221 23465566667776555443 32 488899887 5433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.096 Score=47.48 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee------eeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK------TNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~------~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
.+.+++|+|+|.+.++ .+|.+.-.+..+.... ..+- +... ..++.|.++|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5569999999987777 6777766665442211 1111 1111 478999999977777 569888787633
Q ss_pred CCcee-----EEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 361 PGYSL-----RTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 361 ~~~~~-----~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
.+..- ..+ .+-=..+..|.|.|+|. |. ... |+.++-+...
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Ly-av~-dg~lyr~~~P 162 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LY-AVH-GQQFYKALPP 162 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EE-EEE-TTEEEEECCC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce-EE-EEe-CCcEEecCCC
Confidence 22110 111 11125679999999986 33 334 7776544333
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.08 E-value=2.3 Score=44.08 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEe--cCCCEEEEEEC-------CCe-E-----------E
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQ--PHLGRYLAAAA-------ENV-V-----------S 437 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~--~~~~~l~~~~~-------dg~-I-----------~ 437 (567)
||+++++-.-.+..|-..+++..++.+.+.. .+..+++. |+.+++++++. ||. + .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 4666665555677899999999988877764 34566665 67788888775 222 1 1
Q ss_pred EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----------------eEEEEeCCC-------CC--CCc--e
Q 008393 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------------SVRVWTVGS-------GS--EGE--C 490 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----------------~I~iwd~~~-------~~--~~~--~ 490 (567)
..|..+.+..+.+.- .+....+..+++|+|.++.+.+ .+.++++.. ++ ... -
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 234444444333321 2233445567788888777632 466776641 10 001 1
Q ss_pred EEEeecC---------------CCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCC------cE-------EEeccccCC
Q 008393 491 VHELSCN---------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN------KT-------MTLTAHEGL 541 (567)
Q Consensus 491 i~~~~~~---------------~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~------~~-------~~~~~h~~~ 541 (567)
+..+.+. ....+.|.++|||+++++++. +.++.++|+..- +. .....-.-.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG 379 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG 379 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence 1122221 123456789999999998876 459999998742 11 111122334
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 542 IAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 542 V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....+|.++|....|.-.|..|.-|+
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ccEEEECCCCceEeeeeecceEEEEe
Confidence 66789999995555555788898885
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.68 E-value=3.8 Score=40.65 Aligned_cols=258 Identities=9% Similarity=-0.036 Sum_probs=120.4
Q ss_pred eEEEEeCCCcEEEEeCCC-Ceeeeee--cccCccEEEEEECC-CCCeEEEEeCCC--cEEEEEcCCCCceeEEecc----
Q 008393 301 LLATGGHDKKAVLWHTDT-LKSKTNL--EEHSSLITDVRFSP-SMPRLATSSFDK--TVRVWDADNPGYSLRTFMG---- 370 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~-~~~~~~l--~~h~~~V~~i~fsp-~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~---- 370 (567)
.|.+|+..| +.+++... ++.-..+ ......|.+|++.| +...|+.+...| ...||.....+.....+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccC
Confidence 566677666 44444332 2211111 12245699999998 333454554444 0123333332333232221
Q ss_pred ----------CCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeEEE---------------------eCCeeE
Q 008393 371 ----------HSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF---------------------KGGTAQ 417 (567)
Q Consensus 371 ----------h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~~~~~---------------------~~~~~~ 417 (567)
....|.+|++.|. ...++ .+...+.|...+-......... ...+..
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~ 181 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS 181 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence 1125788999873 34444 4555565555432222211110 012356
Q ss_pred EEEecC-CCEEEEEECCCeEEEEECCC--CeEEEE-ecC-C--------CCCeeEEEEcCC-CCEEEEEeCCeEEEEeCC
Q 008393 418 MRFQPH-LGRYLAAAAENVVSILDAET--QACRLS-LQG-H--------TKPIDSVCWDPS-GELLASVSEDSVRVWTVG 483 (567)
Q Consensus 418 ~~~~~~-~~~l~~~~~dg~I~i~d~~~--~~~~~~-~~~-h--------~~~V~~l~~sp~-g~~l~s~s~d~I~iwd~~ 483 (567)
+.+.|. .+.++++..++.|...+-.. .+.+.. +.. + ...+.+|+++++ ...|+.+..+.|...+-.
T Consensus 182 i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~ 261 (394)
T 3b7f_A 182 ILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR 261 (394)
T ss_dssp EEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT
T ss_pred EEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC
Confidence 777774 45677776666555543322 222110 000 0 124889999985 356666666665554422
Q ss_pred CCCCCceEEEeec--CC---CceEEEEEeCC-CCeEEEEEc-----------CCeEEEEECCC-CcEE-Eec-cccC---
Q 008393 484 SGSEGECVHELSC--NG---NKFHSCVFHPT-YPSLLVIGC-----------YQSLELWNMSE-NKTM-TLT-AHEG--- 540 (567)
Q Consensus 484 ~~~~~~~i~~~~~--~~---~~i~~~~~sp~-~~~l~~~~~-----------dg~I~iwd~~~-~~~~-~~~-~h~~--- 540 (567)
+ .....+.. .. ..+..++++|. ...|+++.. ++...||.... ++.. .+. +...
T Consensus 262 -G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~ 337 (394)
T 3b7f_A 262 -E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQA 337 (394)
T ss_dssp -T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSC
T ss_pred -C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccc
Confidence 2 12222211 11 23567788763 345666542 23344554443 3322 221 1111
Q ss_pred ----CeeEEEEecCC-CEEEEEECCCcEE
Q 008393 541 ----LIAALAVSTET-GYVASASHDKFVK 564 (567)
Q Consensus 541 ----~V~~l~~spdg-~~l~s~s~Dg~I~ 564 (567)
...+++++|.. ..|+.++.++.|.
T Consensus 338 ~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 338 WLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred cceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 12357887743 4466666566554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.47 Score=51.57 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=82.3
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHD------KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~d------g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~ 367 (567)
++++++.||.+ ..+.+||..+.+.... +......- +++...++.+++.|+.++ .+.+||..+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 3578899887543332 22111111 223323777888887654 6899999874332211
Q ss_pred e----ccCCCcEEEEEEcCCCCeEEEEEeC--C-----CcEEEEECCCCe------eeEEEeC-----CeeEEEEecCCC
Q 008393 368 F----MGHSASVMSLDFHPNKDDLICSCDG--D-----GEIRYWSINNGS------CTRVFKG-----GTAQMRFQPHLG 425 (567)
Q Consensus 368 ~----~~h~~~V~~l~~~p~~~~li~s~~~--d-----g~I~iwd~~~~~------~~~~~~~-----~~~~~~~~~~~~ 425 (567)
. ........++.+..+.+.+++.|+. + ..+.+||+.+.. ....... ....+....++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222234455443567767765 2 468999999887 2222211 111223333245
Q ss_pred EEEEEEC--------CCeEEEEECCCCeEE
Q 008393 426 RYLAAAA--------ENVVSILDAETQACR 447 (567)
Q Consensus 426 ~l~~~~~--------dg~I~i~d~~~~~~~ 447 (567)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 5555553 346999999987654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.49 E-value=7.5 Score=39.64 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCe---eeeeec---------ccCccEEEEEECCC---CCeEEEE-eC-
Q 008393 288 SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLK---SKTNLE---------EHSSLITDVRFSPS---MPRLATS-SF- 349 (567)
Q Consensus 288 ~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~---~~~~l~---------~h~~~V~~i~fsp~---~~~l~s~-s~- 349 (567)
..-+.|+|.|||. .|+++...|.|++++.+... .+..+. ........|+|+|+ ..+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456899999996 55566788999999754221 222221 11356889999996 2333333 21
Q ss_pred -C----------CcEEEEEcCCC---------CceeEEec--cCCCcEEEEEEcCCCCeEEEEE
Q 008393 350 -D----------KTVRVWDADNP---------GYSLRTFM--GHSASVMSLDFHPNKDDLICSC 391 (567)
Q Consensus 350 -d----------g~I~iwd~~~~---------~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~ 391 (567)
+ ..|.-|.+... .+.+..+. ........|.|.|||..+|.+|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 14555666421 11222221 1223467899999986555444
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.03 E-value=8.1 Score=36.41 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=107.0
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeE
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 387 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 387 (567)
||.|+.|-....-.+-.-......|..|+..... .++. . ||.|+.|-....+..-. -..-...|..++.... +.
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs 114 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAW--AS 114 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEETT--EE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEECcCC--EE
Confidence 7778877654321111111122356666665443 2333 4 89999998765333211 1111346777777533 33
Q ss_pred EEEEeCCCcEEEEECCCCeeeEE-EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 388 ICSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
+ .-. ||.|+.|-....-.+.. .........+.......++.. ++.|+.|-....-.+-.-..-...|..|+...+.
T Consensus 115 ~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h 191 (282)
T 3qhy_B 115 Y-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH 191 (282)
T ss_dssp E-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE
T ss_pred E-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE
Confidence 3 334 99999997654221110 001111222222233444444 7888888654321100000012456666654433
Q ss_pred CEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEE
Q 008393 467 ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA 546 (567)
Q Consensus 467 ~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~ 546 (567)
. ++. .++.|+.|-......... . ......|..++..... .++.. +|.|+.|-......+.+ ...|.+++
T Consensus 192 s-~al-~~G~v~~wG~n~~gqlg~--p-~~~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~gq~~v---~~~v~~ia 260 (282)
T 3qhy_B 192 S-LAL-KDGKVIAWGDNRYKQTTV--P-TEALSGVSAIASGEWY--SLALK-NGKVIAWGSSRTAPSSV---QSGVSSIE 260 (282)
T ss_dssp E-EEE-ETTEEEEEECCTTSTTCC--C-GGGGSSCCEEEECSSC--EEEEE-TTEEEEESTTCCCCGGG---SSCEEEEE
T ss_pred E-EEE-ECCeEEEEECCCCCCCCC--C-cccCCCceEEEcCCCE--EEEEE-CCEEEEecCCCCccccC---CCCcEEEE
Confidence 3 333 434888887654311110 0 0112235555544333 34444 99999997765443322 33566666
Q ss_pred EecC
Q 008393 547 VSTE 550 (567)
Q Consensus 547 ~spd 550 (567)
....
T Consensus 261 aG~~ 264 (282)
T 3qhy_B 261 AGPN 264 (282)
T ss_dssp ECSS
T ss_pred ECcC
Confidence 5443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=11 Score=37.33 Aligned_cols=163 Identities=10% Similarity=0.078 Sum_probs=97.8
Q ss_pred cEEEEECCCC--eeeEEEeC---------CeeEEEEe---cC----CCEEEEEEC-CCeEEEEECCCCeEEEEecC----
Q 008393 396 EIRYWSINNG--SCTRVFKG---------GTAQMRFQ---PH----LGRYLAAAA-ENVVSILDAETQACRLSLQG---- 452 (567)
Q Consensus 396 ~I~iwd~~~~--~~~~~~~~---------~~~~~~~~---~~----~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~---- 452 (567)
.|.+||+.+. +.++.+.- ....+++. +. +..++++.. ...|.+||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888887 77776643 24556666 22 334444443 67999999999876655421
Q ss_pred C--------------CCCeeEEEEcCC----CCEEEEEeCCeEEEEeCCC-----CCCCceEEEeecCC--CceEEEEEe
Q 008393 453 H--------------TKPIDSVCWDPS----GELLASVSEDSVRVWTVGS-----GSEGECVHELSCNG--NKFHSCVFH 507 (567)
Q Consensus 453 h--------------~~~V~~l~~sp~----g~~l~s~s~d~I~iwd~~~-----~~~~~~i~~~~~~~--~~i~~~~~s 507 (567)
. ...|..|+++|+ ++.|+......-++|.+.+ ......+..+.... ..-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 146888999998 7888877766445555432 21122333332222 334455776
Q ss_pred -CCCCeEEEEEcCCeEEEEECCC-C----cEEEe--ccccCCeeEEEEecCCCEEEEEE
Q 008393 508 -PTYPSLLVIGCYQSLELWNMSE-N----KTMTL--TAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 508 -p~~~~l~~~~~dg~I~iwd~~~-~----~~~~~--~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.+|..+++--..+.|..|+..+ . ....+ ...-..+..+.+..+|.+.+.++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5676566666677999999876 2 11121 12233577888888887666554
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.70 E-value=5.5 Score=37.60 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=105.6
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
.|..|+..... .++. . ||.|+.|-....+..-. -......|..++.... +.++. . ||.|+.|-....-.+-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 46666654432 2333 4 89999998765332211 1112235667766533 34433 4 89999998664221110
Q ss_pred ---EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCC
Q 008393 411 ---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 487 (567)
Q Consensus 411 ---~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~ 487 (567)
+...+..++. .....++.. ++.|+.|-....-.+-.-......|..|+...+..++ -.++.|+.|-......
T Consensus 97 P~~~~~~v~~ia~--G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 97 PAEARSGVDAIAA--GAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VKNGGVIAWGDNYFGQ 171 (282)
T ss_dssp CGGGSSSEEEEEE--ETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EETTEEEEEECCTTST
T ss_pred CcccCCCeEEEEC--cCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EECCEEEEecCCCCCC
Confidence 1122333333 334555666 8899988765421100001122456666654433222 2334888887654221
Q ss_pred CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
... -......|..++..... .++. .+|.|+.|-....-.+ .-......|..++..... .++. . ||.|+.|
T Consensus 172 lg~---p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~w 242 (282)
T 3qhy_B 172 TTV---PAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAW 242 (282)
T ss_dssp TSC---CGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEE
T ss_pred CCC---ceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEe
Confidence 110 00112346555554433 3334 6899999976543222 111122356676654332 2333 3 8888877
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.84 E-value=19 Score=36.67 Aligned_cols=227 Identities=15% Similarity=0.092 Sum_probs=115.8
Q ss_pred ccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCC--ceeEEec---------cCCCcEEEEEEcCC---CCeEEEEEeC-
Q 008393 330 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--YSLRTFM---------GHSASVMSLDFHPN---KDDLICSCDG- 393 (567)
Q Consensus 330 ~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~~~---------~h~~~V~~l~~~p~---~~~li~s~~~- 393 (567)
..-+.|+|.|++. .|+++...|.|++++.+... ..+..+. ........|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 67777889999999754311 1222221 11356889999996 2344444332
Q ss_pred -C----------CcEEEEECCCC----------eeeEEEe-----CCeeEEEEecCCCEEEEEECCC-------------
Q 008393 394 -D----------GEIRYWSINNG----------SCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN------------- 434 (567)
Q Consensus 394 -d----------g~I~iwd~~~~----------~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg------------- 434 (567)
+ ..|.-|.+..+ +.+..+. .....+.|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555665421 2222222 1346789999986666655432
Q ss_pred ----eEEEEECCCC---------------------eEEEEecCCCCCeeEEEEcCC-----CC-EEEEEeC---C--eEE
Q 008393 435 ----VVSILDAETQ---------------------ACRLSLQGHTKPIDSVCWDPS-----GE-LLASVSE---D--SVR 478 (567)
Q Consensus 435 ----~I~i~d~~~~---------------------~~~~~~~~h~~~V~~l~~sp~-----g~-~l~s~s~---d--~I~ 478 (567)
.|.-+|.... ..++ -.+|.. ...++|+|. |. +++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444331 0111 122333 346899996 44 3443321 1 123
Q ss_pred EEeCCCCCC---CceEEEeecC-CCceEEEEEeCCC------CeEEEEEcCCeEEEEECCCCcE----EEec--------
Q 008393 479 VWTVGSGSE---GECVHELSCN-GNKFHSCVFHPTY------PSLLVIGCYQSLELWNMSENKT----MTLT-------- 536 (567)
Q Consensus 479 iwd~~~~~~---~~~i~~~~~~-~~~i~~~~~sp~~------~~l~~~~~dg~I~iwd~~~~~~----~~~~-------- 536 (567)
|..+..+.. ...+..+..+ ...+..+.|-... ..++++...+.|....++.... ..+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444332221 1233333322 1456677764322 1255565557777666654321 1221
Q ss_pred -cccCCeeEEEEecCCCEEEEEE
Q 008393 537 -AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 537 -~h~~~V~~l~~spdg~~l~s~s 558 (567)
.....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235689999999999887765
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=42 Score=36.74 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCC-CeEEEEeCCCc----E
Q 008393 287 TSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM-PRLATSSFDKT----V 353 (567)
Q Consensus 287 ~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~-~~l~s~s~dg~----I 353 (567)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+.. ....|.+|++.|.. ..++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 35666677777766554 23332222322 13469999999843 34555443321 3
Q ss_pred EEEEcCCCCceeEEeccC-------C--CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---------CCe
Q 008393 354 RVWDADNPGYSLRTFMGH-------S--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGT 415 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h-------~--~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---------~~~ 415 (567)
.||.....+.....+... . ..+..|+++|.....++.+...+.|. .....++.-..+. ..+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455554445544433210 1 13567888886555665665444332 2222232222221 235
Q ss_pred eEEEEecCC-CEEEEEECC
Q 008393 416 AQMRFQPHL-GRYLAAAAE 433 (567)
Q Consensus 416 ~~~~~~~~~-~~l~~~~~d 433 (567)
..+.+.|.. +.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 567787754 466666654
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.08 E-value=22 Score=33.22 Aligned_cols=207 Identities=9% Similarity=-0.034 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEe---CCCCeeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCC--
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWH---TDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNP-- 361 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd---~~~~~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~-- 361 (567)
+.+..+.......+|+.-+..|.++--. +........+. ....|..+.... +..+++..+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 4555555555555666666777766433 22221111133 345566664421 4679999999999999987642
Q ss_pred ---CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 362 ---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 362 ---~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
+.....+. ..+.+..+........++ ..+..|.+..+....-.....- ..-+.+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~---------------------a~Gv~~ 159 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPG---------------------ARGVQG 159 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTT---------------------CCCEEC
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCC---------------------CCCEEE
Confidence 11111122 123444444433333333 4455666555554321110000 000111
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC----CCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
. .+.. ...|..+....++..|+..+.. .++...+.... ..+-+..+ ...+.+..+....+...+
T Consensus 160 i---------~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i 228 (276)
T 3no0_A 160 I---------KLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVEL 228 (276)
T ss_dssp C---------CCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEE
T ss_pred E---------ccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEE
Confidence 1 1221 2344444444445566666666 77777664321 11122222 233445554444444567
Q ss_pred EEEEcCCeEEE--EECCC
Q 008393 514 LVIGCYQSLEL--WNMSE 529 (567)
Q Consensus 514 ~~~~~dg~I~i--wd~~~ 529 (567)
+..+.+|.+.. ++...
T Consensus 229 ~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 229 LITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEEEGGG
T ss_pred EEEcCCCeEEEeeeCHHH
Confidence 78888887777 76543
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=81.70 E-value=38 Score=32.46 Aligned_cols=69 Identities=6% Similarity=-0.039 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCC---------CCeeeee---ecccCccEEEE-EECC--CCCeEEEEeCCCcEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSKTN---LEEHSSLITDV-RFSP--SMPRLATSSFDKTVR 354 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~---------~~~~~~~---l~~h~~~V~~i-~fsp--~~~~l~s~s~dg~I~ 354 (567)
+..+........|+..+..|.++-+... .|..+.. +. ....|.++ .... ++.+|+.++.+|.++
T Consensus 41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 3334444444566666677776655432 2232211 22 23345554 4432 256899999999999
Q ss_pred EEEcC
Q 008393 355 VWDAD 359 (567)
Q Consensus 355 iwd~~ 359 (567)
...+.
T Consensus 120 rt~l~ 124 (323)
T 1wp5_A 120 KTELK 124 (323)
T ss_dssp EEEGG
T ss_pred EeEHH
Confidence 99875
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=80.46 E-value=72 Score=34.85 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=73.0
Q ss_pred CccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEeccC-------CCcEEEEEEcCCCCeEEEEEeCCCc----
Q 008393 329 SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGE---- 396 (567)
Q Consensus 329 ~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~~li~s~~~dg~---- 396 (567)
...|.+|+++|.. ..++.+...+.|...+ ..+.....+..+ ...|.+|++.|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 4579999999863 4677777777665444 334444444332 2469999999864444444432211
Q ss_pred EEEE-ECCCCeeeEEEeC------------CeeEEEEecCCC-EEEEEECCCeEEEEEC--CCCeEEEEec---CCCCCe
Q 008393 397 IRYW-SINNGSCTRVFKG------------GTAQMRFQPHLG-RYLAAAAENVVSILDA--ETQACRLSLQ---GHTKPI 457 (567)
Q Consensus 397 I~iw-d~~~~~~~~~~~~------------~~~~~~~~~~~~-~l~~~~~dg~I~i~d~--~~~~~~~~~~---~h~~~V 457 (567)
-.|| ....++.-..... ....+++.|... .++++...+.|..-+- ++.+.+..+. .....+
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence 2233 3333433222211 124577777543 4445443444332211 2233322111 112457
Q ss_pred eEEEEcCC-CCEEEEEeC
Q 008393 458 DSVCWDPS-GELLASVSE 474 (567)
Q Consensus 458 ~~l~~sp~-g~~l~s~s~ 474 (567)
..|.++|. +..|+.+..
T Consensus 172 ~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASAT 189 (789)
T ss_dssp EEEEECTTSTTCEEEEES
T ss_pred EEEEECCCCCCEEEEEEc
Confidence 88999884 445555554
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.10 E-value=43 Score=32.12 Aligned_cols=260 Identities=9% Similarity=0.038 Sum_probs=132.9
Q ss_pred CeEEEEeCCCcEEEEeCCCCe---------eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc---CC-----CC
Q 008393 300 KLLATGGHDKKAVLWHTDTLK---------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DN-----PG 362 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~---------~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~---~~-----~~ 362 (567)
.++++.+.+|.|+--.+.+.+ .-..++ ..+.+..+........|+.-+..|.++.... .. .+
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 356777788888765543211 111122 2344555555555667777777887665543 22 12
Q ss_pred ceeEEec--cCCCcEEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCee-------eEEEeC--CeeEEEEecCCCEEEE
Q 008393 363 YSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC-------TRVFKG--GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 363 ~~~~~~~--~h~~~V~~l~~~p~--~~~li~s~~~dg~I~iwd~~~~~~-------~~~~~~--~~~~~~~~~~~~~l~~ 429 (567)
..+..+- .....|..+....+ ....++..+.+|.|+...+..... ...++. ....+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2211111 12345665544332 234556889999999988754221 112222 2333444455678999
Q ss_pred EECCCeEEEEECC--C---------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC----CceEE-
Q 008393 430 AAAENVVSILDAE--T---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECVH- 492 (567)
Q Consensus 430 ~~~dg~I~i~d~~--~---------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~----~~~i~- 492 (567)
.+..|.+..+... . |.....+. ....|.++...+++.+|+..+.. .++.-.+..... ..-+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999988888766 2 22212232 23557776666666677777777 888777643211 01122
Q ss_pred -EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-------Ee--ccccCCeeEEEEec-CCCEEEEEECCC
Q 008393 493 -ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------TL--TAHEGLIAALAVST-ETGYVASASHDK 561 (567)
Q Consensus 493 -~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-------~~--~~h~~~V~~l~~sp-dg~~l~s~s~Dg 561 (567)
.+......+..+....+...++..+.+|.+.-++...-... .. ......|.++...+ +...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222344555555555567888888888777765432211 11 12234566665543 334466665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 567 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-34 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-25 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-18 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-16 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-15 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-15 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 5e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 8e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 8e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 129 bits (323), Expect = 9e-34
Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 11/340 (3%)
Query: 232 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 291
+LR + ++L + D ++ D V + + ++R +K+
Sbjct: 6 QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351
H+ +D +LL + D K ++W + T + SS + ++PS +A D
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119
Query: 352 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408
+++ + R GH+ + F + + S D + + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 409 RVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 467
G R + + + D CR + GH I+++C+ P+G
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 468 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527
A+ S+D+ + + S F + LL + +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 528 -SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
++ L H+ ++ L V+ + VA+ S D F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.1 bits (175), Expect = 3e-14
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 347
+ FS G+LL G D +W L H + ++ + + +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 348 SFDKTVRVWD 357
S+D +++W+
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.1 bits (170), Expect = 1e-13
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 43/221 (19%)
Query: 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366
D LW +T + T H+ + + +P + + D + ++WD G +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220
Query: 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 426
TF GH + + ++ F PN + + D R + +
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------------------ 261
Query: 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485
S I SV + SG LL + +D + VW
Sbjct: 262 -------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526
+ L+ + N+ ++ L++WN
Sbjct: 303 ---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315
A + ++V C + DG +ATG D +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 117 bits (293), Expect = 8e-30
Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 30/315 (9%)
Query: 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337
E ++ S V F ++ + D +W +T + L+ H+ + D+ F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
S LA+ S D T+++WD RT GH +V S+ PN D I S D I
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 125
Query: 398 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 454
+ W + G C + F G +R + + + V + T+ C+ L+ H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 455 KPIDSVCW--------------------DPSGELLASVSED-SVRVWTVGSGSEGECVHE 493
++ + W G L S S D ++++W S G C+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMT 242
Query: 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 552
L + N +FH +L ++L +W+ + M TL AHE + +L
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
Query: 553 YVASASHDKFVKLWK 567
YV + S D+ VK+W+
Sbjct: 303 YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.3 bits (217), Expect = 7e-20
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)
Query: 238 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 296
L+ S D V ++ + R + ++ + + S + +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356
G L +G DK +W T L H + + V F + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400
D N ++T H V SLDFH + + D ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.9 bits (216), Expect = 1e-19
Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 62/226 (27%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335
+ + V + DG L+A+ +D+ +W T + K L EH ++ +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 336 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 375
+ P L + S DKT+++WD G L T +GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 376 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 435
+ FH I SC D +R W N C +
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286
Query: 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
H + S+ + + + + S D +V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.1 bits (175), Expect = 2e-14
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335
+ ++ + V F S GK + + DK +W + L H +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 336 RFSPSMPRLATSSFDKTVRVWD 357
F + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (87), Expect = 0.002
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 523 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+ W + L+ H + + + SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (259), Expect = 7e-25
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 44/324 (13%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------H 328
TS V C FS+DG+ LATG +K ++ L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 388
I V FSP LAT + D+ +R+WD +N + F +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACR 447
S D I S T + G + P G+Y+AA + V + D+ET
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 448 LSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GEC 490
L GH + SV + G+ + S S D SV++W + + + G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVST 549
+ + S +L + + W+ S N + L H + ++AV+
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 550 ------ETGYVASASHDKFVKLWK 567
E A+ S D ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.0 bits (185), Expect = 2e-15
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 327
E S V F+ DG+ + +G D+ LW+ +K++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 328 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 383
H + V + + + + S D+ V WD + G L GH SV+S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364
Query: 384 --KDDLICSCDGDGEIRYWSI 402
+ ++ + GD + R W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 53/210 (25%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 344
DGK +A G D+ +W ++T L+ H + V F+ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 345 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 393
+ S D++V++W+ N T++GH V+S+ N D+ I S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328
Query: 394 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 453
D + +W +G+ + +G H ++ A N
Sbjct: 329 DRGVLFWDKKSGNPLLMLQG---------HRNSVISVAVAN------------------- 360
Query: 454 TKPIDSVCWDPSGELLASVSED-SVRVWTV 482
P + A+ S D R+W
Sbjct: 361 -----GSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 5e-09
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 338 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394
S S+P + +++ P L + H++ V + F + + L C+
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84
Query: 395 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 454
+ + +++GS +A + +L S
Sbjct: 85 --TQVYRVSDGSLVARLSDDSAANKDPENL---------------------NTSSSPSSD 121
Query: 455 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514
I SVC+ P G+ LA+ +ED + + + + + + F +
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 515 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
G + ++TL+ +G+ + Y+A+ S D+ V++W
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.6 bits (228), Expect = 4e-21
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 18/295 (6%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335
K ++ VI C G + +G D +W T K L H+ +
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395
+ ++ + + ++ + + S D
Sbjct: 64 QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 396 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 454
+R W I G C V G A +R + GR + + A +V + D ET+ C +LQGHT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513
+ S+ +D G + S S D S+RVW V G C+H L+ + + L
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--L 230
Query: 514 LVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYVASASHDKFVKLW 566
+ ++++W++ + + A + +V ++S D VKLW
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 1e-15
Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351
DG+ + +G +D +W +T L+ H++ + ++F + + S D
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDT 197
Query: 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 411
++RVWD + + T GH + ++ N ++ S + D ++ W I G C +
Sbjct: 198 SIRVWDVETG-NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 412 KGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQAC-----RLSLQGHTKPIDSVCW 462
+G Q + + ++ + V + D +T L G + +
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 463 DPSGELLASVSED-----SVRVW 480
+ + A S + + V
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 347
+ + +L +G D +W T + L+ + + V TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 348 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 399
S D TV++WD G +R + G V + K S +G + ++
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 400 WSIN 403
+
Sbjct: 336 LDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 53/254 (20%)
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415
W S + GH V++ + I S D ++ WS G C R G T
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 416 AQ-----------------------------------------MRFQPHLGRYLAAAAEN 434
H R ++ + +
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 494
+ + D ET C L GH + +++ + V+VW C+H L
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTL 173
Query: 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIAALAVSTETGY 553
+ N+ +S F + ++ S+ +W++ TLT H+ L + + +
Sbjct: 174 QGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229
Query: 554 VASASHDKFVKLWK 567
+ S + D VK+W
Sbjct: 230 LVSGNADSTVKIWD 243
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (208), Expect = 1e-18
Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 11/288 (3%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 341
V S+ + + TGG +W +K+ + + I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRY 399
L T+ +WD P ++ + S A +K C DG+ +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 400 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 459
A + G L + + +L T I S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 460 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519
+ + P+GE LA E S ++L + + S F + G
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLH---VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 520 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
L W ++ + + + +S + Y+ + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 35/280 (12%), Positives = 73/280 (26%), Gaps = 8/280 (2%)
Query: 294 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
H ++DG++ D + L H ++ V S + T
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 353 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLI-CSCDGDGEIRYWSINNGSC 407
V+VWD +PG S + + S P+ LI I +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 408 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 467
+ + + ++ D
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 468 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527
+ + + ++ S + PT L V ++E+ ++
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 528 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
++ L HE + +L + + S D + W+
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 8e-12
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 347
S++ + G+ LA G + H + H S + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283
Query: 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402
D + W G S+ S+SV+S D + D I + GD + + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (203), Expect = 3e-18
Identities = 49/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)
Query: 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341
R+ TSK + C D + + +G D +W +TL+ K L H+ + +++ +
Sbjct: 9 HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
+ + ++ + ++ +C D I W
Sbjct: 68 I------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 402 INNGSCTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 457
+ + + + + A ++A+ + + + + T +L GH + I
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 458 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516
C L+ S S D ++R+W + EC L +V
Sbjct: 182 A--CLQYRDRLVVSGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 517 GCYQ-SLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565
G Y +++W++ TL H G + L + S+SHD + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291
Query: 566 W 566
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 1e-09
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 8/204 (3%)
Query: 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 424
+ S V L + I S D I+ W N C R+ G T + +
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 484
R + + + + L+ H +G ++ + S+ VW + S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIA 543
++ L + + F Y ++ +++++WN S + TL H+ IA
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182
Query: 544 ALAVSTETGYVASASHDKFVKLWK 567
L V S S D ++LW
Sbjct: 183 CLQYRDR--LVVSGSSDNTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 341
+ D K + +G +D K +W L EHS + ++F
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278
Query: 342 PRLATSSFDKTVRVWD 357
++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.1 bits (198), Expect = 4e-17
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 21/279 (7%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 347
+ C ++ D +A ++ + ++ L+EH+ +T V ++P R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
D+ VW + + + G I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 408 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 467
V K +R ++L + + L + + +
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 468 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527
V E GE + E S + H F + + ++ L +
Sbjct: 174 ---EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 528 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+ + A E L + +A HD F L+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.3 bits (170), Expect = 1e-13
Identities = 39/323 (12%), Positives = 98/323 (30%), Gaps = 32/323 (9%)
Query: 273 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 330
G + + + ++ +V ++ D + T G D+ A +W T K + +
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 331 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 388
VR++P+ + A S + + + +N + + S + L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 389 CSCDGDGEIRYWSINNGSCTRV---------------------FKGGTAQMRFQPHLGRY 427
+ D + R +S G + F + R
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 428 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 487
+ ++ V + DA+ + +L T P+ +V + L+A+ + ++T S +
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA- 275
Query: 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 547
+ + + + H+ ++ ++V
Sbjct: 276 --GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333
Query: 548 STETGY----VASASHDKFVKLW 566
+ + D + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351
F ++ L+A G HD VL+ D+ K + + R + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 406
+ G L + H SV + K C+ DG + W + +
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509
+PI W+ +A + V ++ SG++ VHEL + + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 510 YPSLLVIGCYQSLELWNM 527
++ G ++ +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 350
DKKA H + ++ + + T+ D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 351 KTVRVWDADNPGYSLRTF 368
+ +WD + +L+
Sbjct: 351 GGMSIWDVRSLESALKDL 368
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 77.7 bits (189), Expect = 2e-16
Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 6/285 (2%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 345
+ S+DGK L + + W T S + + H+++IT ++ S L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70
Query: 346 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405
T S+D ++V A G + + S L + D I I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 406 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465
+ + + + V + + H I SV + +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 466 GELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524
G L + V ++V + E + + + K + P L S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 525 WNM---SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
WNM S++ + AH + + SA D +K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.2 bits (146), Expect = 6e-11
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 383
H+ IT + S L ++ + + WD G S R F H+ + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66
Query: 384 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 443
D + + D ++ L
Sbjct: 67 GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 444 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHS 503
+ + S + + +V +V + + + S
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST----ETGYVASASH 559
F L+ + + ++++ N + T A + +A+ S
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 560 DKFVKLW 566
D V +W
Sbjct: 245 DNSVIVW 251
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 39/163 (23%)
Query: 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 424
+ GH+ ++ +L + + S D +G I W I+ G RVF
Sbjct: 5 DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----------- 52
Query: 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 484
H I + G+L +D ++V G
Sbjct: 53 ---------------------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85
Query: 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527
+ ++ + +
Sbjct: 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.2 bits (102), Expect = 2e-05
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 349
C +S D LATG D ++W+ + H+ + + + ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 350 DKTVRVWD 357
D ++ W+
Sbjct: 289 DSNIKFWN 296
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.3 bits (183), Expect = 2e-15
Identities = 35/307 (11%), Positives = 70/307 (22%), Gaps = 29/307 (9%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 346
+ LL D ++ D +L + + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+ + S + + A++ DD + + DG I N
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 407 CTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--- 454
+ + R + + V +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 455 -KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GECVHELSCNGNK 500
+ D E A S D V V + + +
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560
+S F P + L G + WN+ K + A + + ++ + A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313
Query: 561 KFVKLWK 567
K
Sbjct: 314 DTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 7e-15
Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 30/272 (11%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 382
+ I+D++ PS L +S+D ++ V+ D L + + ++ +F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV------ 436
N D I GEI + + A +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 437 ----SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECV 491
+ D L+ D + L +S V+ + + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 492 HELSCNGNKFHSCVFHPTYPSLLVIGCY-----------------QSLELWNMSENKTMT 534
E S + P S +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 535 LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
T + ++ S ++ +A D + W
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351
FS K L T G D W+ T K N + + + V+ + S L ++ D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314
Query: 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 383
T + A + +T +++S+ + + N
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 11/169 (6%), Positives = 33/169 (19%), Gaps = 37/169 (21%)
Query: 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 424
++ + + P+ L+ DG + + + +
Sbjct: 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQ----------- 51
Query: 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 484
+ P+ + + +L V + V
Sbjct: 52 -------------------------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86
Query: 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533
+ N + L+ +E+ +
Sbjct: 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 73.8 bits (179), Expect = 6e-15
Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 14/291 (4%)
Query: 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 348
+ + G + + +L EHS T + SPS A+
Sbjct: 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 349 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
VR+WD + L+T + S V + + + +G + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 408 TRVFKGGTA-----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 462
+ G A R ++ + +N V+I + + + HTK + SV +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 463 DPSGELLASVSEDSVRVWTVGSGSEGECVH-----ELSCNGNKFHSCVFHPTYPSLLVIG 517
+P G L AS D V G V + + + P +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 518 CYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 566
+++++WN++ K T+ + L + + S S + F+
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 350
+S DG +A+ DK +W+ TLK + + + + + + L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 351 KTVRVWDAD 359
+ + +
Sbjct: 303 GFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (109), Expect = 4e-06
Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 287 TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344
+ + S G A+G + T KT + S + D+ + R+
Sbjct: 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Query: 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404
A + + + A M+ D
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177
Query: 405 G----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-------QACRLSLQGH 453
S +R+ P + + + + + + + L H
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237
Query: 454 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP 511
+ + + W P G +AS S D ++++W V + + + + T
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 512 SLLVIGCYQSLELWNM 527
+L+ I + N
Sbjct: 295 ALVSISANGFINFVNP 310
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.8 bits (179), Expect = 8e-15
Identities = 38/304 (12%), Positives = 86/304 (28%), Gaps = 21/304 (6%)
Query: 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341
++R + VI C + + TG DK ++ + K L H + ++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
L + S D+TVRVWD + +S I + D + W
Sbjct: 66 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 402 INNGSCTRVFKGGTAQ--MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 459
+ S + P Y ++ + + + + G
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 460 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN-----------------KFH 502
V + L +S + R+++ E + S +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244
Query: 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 562
LV + + + + H ++A+ + + + +
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 304
Query: 563 VKLW 566
++
Sbjct: 305 FNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 5e-08
Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 391
++ + + S + +++ + + + + S++F L+ +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341
Query: 392 DGDGEIRYWSIN 403
+ DG+ ++
Sbjct: 342 EKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 7e-07
Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 447 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505
R +L+GH + + C + + ++D +RV+ + + + +LS + +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALK 60
Query: 506 FHPTYPSLLVIG----CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 561
+ +LV G + ++ + Y+ + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 562 FVKLWK 567
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 4e-06
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 10/250 (4%)
Query: 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 342
V S + + G + L ++ + + VR
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402
+ S + L GH+ + S + + I + D IR W +
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL 230
Query: 403 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 462
NG +G TA + ++L +AA + R HT +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 463 DPSGELLASVSEDSVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 521
S +L S SE+ ++ + S G+ VH + + ++ S F L+
Sbjct: 291 YVSDNILVSGSENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGKT--LVAAVEKDG 345
Query: 522 ---LELWNMS 528
LE+ + S
Sbjct: 346 QSFLEILDFS 355
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.9 bits (169), Expect = 1e-13
Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 27/307 (8%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 342
+ + +A V + SS++T V+FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 343 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 393
L + V VW F + + + + + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 394 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQAC 446
D + S ++G+ G + ++ + + A
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 447 RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV--WTVGSGSEGECVHELSCNGNKFHSC 504
+ + V + P ++ + SG + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 505 VFHPTYPSLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVS-TETGYVASASHD 560
+ +G ++ +W+++ +K TL + + V T G + S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 561 KFVKLWK 567
+ ++
Sbjct: 318 GTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.5 bits (121), Expect = 1e-07
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 400
+ AT D T+RVWD ++ + + + + I S DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 401 SI 402
+
Sbjct: 324 EL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 3e-06
Identities = 30/266 (11%), Positives = 65/266 (24%), Gaps = 28/266 (10%)
Query: 287 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 336
+S V FS + L +G K ++W + K+ + + I+D+
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 337 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394
+ RL D D+ + D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 395 GEIRYWSINNGSC---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445
+ Y + + + + E
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--H 502
Q + + A+V D ++RVW V + +CV + + + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 299
Query: 503 SCVFHPTYPSLLVIGCY-QSLELWNM 527
T ++ +L + +
Sbjct: 300 QVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.002
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)
Query: 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKGGTAQ----MRFQPHL 424
L + P + + C +R + F G + ++F P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 425 -GRYLAAAAEN-VVSILDAETQACRLSL--------QGHTKPIDSVCWDPSGELLASVSE 474
+YL + E+ V + S+ Q PI + WD G L V E
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 475 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533
S G + E+S + + ++C + P + ++
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 20/316 (6%), Positives = 74/316 (23%), Gaps = 45/316 (14%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 352
+ + + + + + K+ + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 353 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
+ D D + + S+ S P+ ++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 408 TRVFKGGTAQMRFQPHLGRY-------------LAAAAENVVSILDAETQACRLSLQGHT 454
VF A + +D +T ++L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 455 KP------------------------IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 490
+ ++ + + ++ +V +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 550
E + + + + P P+ + L +++ + K + + +A +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302
Query: 551 TGYVASASHDKFVKLW 566
+ + ++
Sbjct: 303 GDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T S G ++ A + K V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 347 SSFDKTVRVWDAD 359
+ V++ D
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 5/130 (3%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 348
F D + AT + T K+ T + L SP P
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 349 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408
+ + +D L + + F D + ++ ++ +
Sbjct: 271 LN-RLAKYDLKQ--RKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 409 RVFKGGTAQM 418
+ K M
Sbjct: 327 KNIKLPGGDM 336
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 9e-12
Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 71/316 (22%)
Query: 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 367
+ + + H + I V + S D ++VWD + ++
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--------- 418
+ H + +++ + L+ + G++ ++ I T+ +
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 419 --------RFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQ 451
L L A + E Q S
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 452 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511
++ SV G L+A+ + + S E + + + +
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 512 SLLVIGCYQS---------------------LELWNMSENKTMTLTAHEGLIAALAVSTE 550
+ L + S ++ AH + +L+ +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 551 TGYVASASHDKFVKLW 566
+ SA D ++ W
Sbjct: 301 GETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 44/231 (19%)
Query: 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL------WHTDTLKSKTNLEEHSSL 331
S + S G L+ATG ++ + +S+ ++ +S+
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 332 ITDVRFSPSMPRLATSSFDKTVRVW---------------DADNPGYSLRTFMGHSASVM 376
I V+FSP LA + + + + HS+ VM
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL------GRYLAA 430
SL F+ + + L + DG++R+W + + + + G LA
Sbjct: 294 SLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
V L K S E L V D S+R +
Sbjct: 353 PGVFDVKFLK--------------KGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 4e-08
Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 28/200 (14%)
Query: 314 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 373
+ + + S T V S +AT + TV++ + HS
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227
Query: 374 SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTR-------------------V 410
S + L+ ++
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 411 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI----DSVCWDPSG 466
+ F +A + + D +T+ +L H I D + D G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 467 ELLASVSEDSVRVWTVGSGS 486
+ LA V+ G S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRS 367
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 256 HDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315
+ G S + + A +S V+ F+ G+ L + G D K W
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 316 TDTLKSKTNLEEHSS----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371
T + T L H + LA V+D R+ MG
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGA 371
Query: 372 SASVMSLDFHPNKDDLICSCDGDGEIRYW 400
+ ++ +C D IR++
Sbjct: 372 -----------DLNESLCCVCLDRSIRWF 389
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 63.7 bits (153), Expect = 1e-11
Identities = 21/227 (9%), Positives = 46/227 (20%), Gaps = 21/227 (9%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340
S + + G + ++ + K E+S F
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDAD 189
Query: 341 MPRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394
L S+ D S P
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 395 GEIRYWSI------NNGSCTRVFKGGTAQMRFQPH--LGRYLAAAAEN-VVSILDAETQA 445
++ S + + H Y A E V+ D +T+
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491
+ + + + + +D + + + + V
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 63.0 bits (151), Expect = 3e-11
Identities = 26/305 (8%), Positives = 62/305 (20%), Gaps = 26/305 (8%)
Query: 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344
++ D K+ G + L D K E + +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---------NKDDLICSCDGDG 395
A + D+ + G A +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 396 EIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAE-NVVSILDAETQACR------ 447
I + + + + L + ++ D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 448 -LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-----SGSEGECVHELSCNGNKF 501
+ + P + D ++ + + L + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 561
V L +++ KT +T + + L +S + V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 562 FVKLW 566
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 25/297 (8%), Positives = 55/297 (18%), Gaps = 28/297 (9%)
Query: 295 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353
FS DG L+A + + D + I VR +
Sbjct: 10 FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413
+ D F + +V ++ N + + D +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----------CRLSLQGHTKPIDSVCW 462
F A + + + +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 463 DPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517
D + L +S + + + P +
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246
Query: 518 CYQSLELWNMSENKT--------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+ S + L + + + Y A + +
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.3 bits (131), Expect = 8e-09
Identities = 16/165 (9%), Positives = 37/165 (22%), Gaps = 15/165 (9%)
Query: 253 FLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAV 312
+LS+ DP + S + + G +D +
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVVS--KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252
Query: 313 LWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365
+ + LE + + + + +D
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----- 307
Query: 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 410
R ++ L + + DG+I + + R
Sbjct: 308 RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 15/181 (8%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMP 342
F +D K L + L + + P
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240
Query: 343 RLATSSFDKT---VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEI 397
+D R + R + +S++ + + G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 398 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKP 456
+ + T K +R + + + + E +++ +P
Sbjct: 301 LKYDVKTRKVT-EVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Query: 457 I 457
+
Sbjct: 359 L 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 0.001
Identities = 22/250 (8%), Positives = 56/250 (22%), Gaps = 21/250 (8%)
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394
FSP L + D + + + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 395 GE-IRYWSINNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451
G+ + + G + + M + + A + +D ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 452 GHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFHSC 504
I + +A V EG + + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 505 VFHPTYPSLLVIGCYQSLELWN--------MSENKTMTLTAHEGLIAALAVSTETGYVAS 556
F +L + + +K + G + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 557 ASHDKFVKLW 566
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.4 bits (144), Expect = 1e-10
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396
+AT S D + ++ P ++ H V +L + + S D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280
Query: 397 IRYWSI 402
I+ W++
Sbjct: 281 IKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (141), Expect = 3e-10
Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 56/288 (19%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384
+ H+ IT + +P L + S+D + W + + HS ++SLD +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58
Query: 385 ----------------------------------DDLICSCDGDGEIRYWSINNGSCTRV 410
+ + D D I + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 411 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
+ + + + ++ + + PS +A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 471 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------S 521
+ + E + + +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 522 LELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
+ ++++ L AH+ + L T + S+ D +K W
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 7e-06
Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415
+ + + S + + + +
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218
Query: 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 474
+ + + + I + + L H ++++ W+ L++S ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278
Query: 475 DSVRVWTV 482
++ W V
Sbjct: 279 ACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
L+T GH+ + +L +P + S DG I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 449 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG--ECVHELSCNGNKFHSCV 505
++ GH K I ++ +P L S S D + W+ S + + L + + +S +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63
Query: 506 FHPTYPSLLVIGCYQSLELWNM 527
+ I ++ +
Sbjct: 64 SWDDTLKVNGITKHEFGSQPKV 85
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.0 bits (141), Expect = 4e-10
Identities = 28/305 (9%), Positives = 66/305 (21%), Gaps = 38/305 (12%)
Query: 300 KLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 356
+ K V+ + + + +P AT + +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 357 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412
D L T S+ P+ L + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 413 GGTAQMRFQPHLGRYLAAAAEN-----------VVSILDAETQACRLSLQGHTKP----- 456
T R R + A + ++D E +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 457 -IDSVCWDPSGELLASVSEDSVRVWTVG----SGSEGECVHELSCNGNKFHSCVFHPTYP 511
D + E ++ + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 512 ----------SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 561
G Y LE +++ +N ++ ++ VST+ V
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 562 FVKLW 566
+ +
Sbjct: 302 DLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 7e-06
Identities = 19/232 (8%), Positives = 49/232 (21%), Gaps = 28/232 (12%)
Query: 255 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW 314
+ ++ ++ DG L G D +
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
Query: 315 HTDTLKSK---------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353
TL + + +++ +
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413
D + ++R S +P K + + + + + +
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL 278
Query: 414 GTA--QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCW 462
+ + G + A ++ DAET + + S+
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 57.9 bits (139), Expect = 1e-09
Identities = 30/298 (10%), Positives = 69/298 (23%), Gaps = 29/298 (9%)
Query: 295 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
D + T + L T + KT L+ + + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84
Query: 353 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408
V + D ++ + S I +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 409 RVFKGGTAQMRFQP-------------HLGRYLAAAAE--NVVSILDAETQACRLSLQGH 453
++ Q H + + ++D + +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 454 T-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512
+ + D S + + ++ + + EG+ V G H +
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDT-KEGKLVAIEDTGGQTPHPG-RGANFVH 262
Query: 513 LLVIGCYQSLELWN----MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+ + + + + + I + G + +H L+
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 8e-08
Identities = 28/290 (9%), Positives = 71/290 (24%), Gaps = 33/290 (11%)
Query: 295 FSSDGKLLAT----------GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344
+ DG +A G ++ TL ++E + V P M
Sbjct: 54 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM--T 111
Query: 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH------PNKDDLICSCDGDGEIR 398
+ + KT+ + + A LD P D DG +
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA 171
Query: 399 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 458
+ + + + + + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH------------ 219
Query: 459 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518
SG+ + +++ G +++ + +
Sbjct: 220 -QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 519 YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLW 566
+ + + + + + I ++ VS + A ++ DK + +
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 22/211 (10%), Positives = 43/211 (20%), Gaps = 7/211 (3%)
Query: 178 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 237
P GT + + +
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205
Query: 238 DRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 294
+ + + P + + G+ V +
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 352
+ V+ T + E I + S L A S+ DKT
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPN 383
+ + DA++ G LR+ +
Sbjct: 325 LYIHDAES-GEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 28/210 (13%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340
T+ DG L + ++ E LI +S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205
Query: 341 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPN---------------- 383
RL ++ + D + L + + + + P
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 384 ---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAA--ENVV 436
+ D + G F+ G + L A + + +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 437 SILDAETQACRLSLQGHTKPIDSVCWDPSG 466
I DAE+ S+ + G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 8e-04
Identities = 19/157 (12%), Positives = 35/157 (22%), Gaps = 1/157 (0%)
Query: 258 DTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 317
T+ + +S K V + + I S G + D
Sbjct: 185 HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 244
Query: 318 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377
+ + D + R + V D + S
Sbjct: 245 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDS 304
Query: 378 LDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKG 413
++ + K L GD + +G R
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 346 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404
S + + VW+ ++ G +L + V + P+K L + + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 405 GSCTRVF 411
F
Sbjct: 69 DDGALTF 75
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 5e-06
Identities = 25/318 (7%), Positives = 70/318 (22%), Gaps = 48/318 (15%)
Query: 295 FSSDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------- 341
+ + + W + T + ++ S
Sbjct: 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF 86
Query: 342 PRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395
R A V V+D V + + L+ G
Sbjct: 87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146
Query: 396 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS------ 449
S+ S ++ K + + + ++ D
Sbjct: 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206
Query: 450 LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509
+ + G L+ +V+ + + + + N + + F
Sbjct: 207 TGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNESGRKADNFRSA 264
Query: 510 YPSLLVIGCYQSLELWNMSENKTMTLTA-------------------HEGLIAALAVST- 549
++ + E+ L A + A+ +
Sbjct: 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQD 324
Query: 550 -ETGYVASASHDKFVKLW 566
+ A+++ + + ++
Sbjct: 325 GASDNYANSAGTEVLDIY 342
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 7/123 (5%)
Query: 295 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
D T + L D+ K ++ + + R S S L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 353 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408
+ + D ++ + + S I +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 409 RVF 411
++
Sbjct: 145 QIV 147
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 19/156 (12%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSMPRLATSSF 349
S+ G+ L G D + + + E S+ + ++
Sbjct: 69 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 128
Query: 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-----------NKDDLICSCDGDGEI- 397
+ +V + +HP + I + G++
Sbjct: 129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188
Query: 398 --RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431
Y I+N + T + RY A
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA 224
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 8e-04
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS--VRVWTVGS 484
Y+A + + +S++D + ++ + P+ P G + + S V + +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533
+ V S S Y + + ++ + + T+
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 8e-04
Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 6/267 (2%)
Query: 304 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG 362
+ + K + S+ SP ++ ++ V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-N 64
Query: 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 422
+ T S+ K + + + +N V G +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 423 HLGRYL--AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 480
G+ L + VS+++ T+A ++ P ++ + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 540
+ ++ + V + ++ + + NK
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 541 LIAALAVSTETGYV-ASASHDKFVKLW 566
A +AV+ + V + S V +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 567 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.39 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.36 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.3 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.22 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.21 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.17 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.14 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.11 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.09 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.07 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.04 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.0 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.96 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.95 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.82 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.82 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.69 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.38 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.33 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.15 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.11 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.08 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.9 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.86 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.8 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.79 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.73 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.63 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.62 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.57 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.55 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.46 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.34 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.27 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.84 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.83 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.54 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.5 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.35 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.42 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.18 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.9 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.44 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.17 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.04 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 92.72 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.7 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.87 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.85 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 88.18 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 87.05 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.4e-41 Score=328.25 Aligned_cols=284 Identities=26% Similarity=0.488 Sum_probs=263.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+...|+||+++|++++|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++++.+++++..++.+.+|+.
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.. ......+.+|...+.++.|++++..+ ++++.|+.+++||+++++.+..+.. ....+.+++++..+++++.|+.
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 166 (317)
T d1vyhc1 89 QG-FECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166 (317)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cc-cccccccccccccceeeeccCCCceE-EeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence 87 56667778899999999999998755 4899999999999999998888765 4678889999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCC--------------------CEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSG--------------------ELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g--------------------~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
|++|+..+++.+..+.+|...+.+++|++++ .++++++.| .|++||++++ .++..+
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~ 243 (317)
T d1vyhc1 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 243 (317)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEE
Confidence 9999999999999999999999999998753 478899999 9999999876 788899
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|...|.+++|+|++++|++++.||.|++||+.+++.+ .+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus 244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999999999999999998876 7789999999999999999999999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-40 Score=332.22 Aligned_cols=282 Identities=19% Similarity=0.290 Sum_probs=249.7
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-----eeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-----~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+.+..+ .|...|.|++|+|+|++||+|+ ||.|+|||+.+.... ....+|...|.+++|+|++++|++|+.||.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 455555 7999999999999999999997 899999999765332 234579999999999999999999999999
Q ss_pred EEEEEcCCC-CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEE
Q 008393 353 VRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 428 (567)
Q Consensus 353 I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 428 (567)
|++||+... ......+..|...|.+++|+|++. ++++++.|+.|++|++.++++...... .+.+++|++++..++
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~ 199 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999753 345567788999999999999976 555899999999999999998877653 577889999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
+++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.| .|++||++++. ......|...|.+++|+
T Consensus 200 ~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~i~~v~~s 274 (337)
T d1gxra_ 200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFA 274 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEEC
T ss_pred cccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc----cccccccccccceEEEC
Confidence 99999999999999999887765 78999999999999999999999 99999998752 23556788999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|++++|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++|+.||.|+|||
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999999999987778999999999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.5e-39 Score=318.02 Aligned_cols=287 Identities=21% Similarity=0.422 Sum_probs=253.8
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++..++|+||+++|+|++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++|+.|+.+++
T Consensus 44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 356 WDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 356 wd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|+..... .....+.+|...+.......+ . .+..+..|.....|............. .+....+.+....+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccccccccccccceecccccccccccccccc-c-ccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 9987533 344567788887777766654 3 455778899999999988776655543 4567778889999999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe--ecCCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~--~~~~~~i~~~~~ 506 (567)
+..|+.|++||+++++++..+.+|...|++++|+|++++|++++.| .|++||++.. ..+..+ ..+...+.+++|
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEE
Confidence 9999999999999999999999999999999999999999999999 9999999765 344333 455677999999
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++|++++.||.|++||+.+++.+ .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999999999998887 7889999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-39 Score=327.67 Aligned_cols=283 Identities=27% Similarity=0.431 Sum_probs=243.2
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec------------------ccCccEEEEEECCCCCe
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------------------EHSSLITDVRFSPSMPR 343 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~------------------~h~~~V~~i~fsp~~~~ 343 (567)
...+|++.|+||+|+|||++||+|+ |+.|+|||+.+++.+..+. .|...|++++|+|++++
T Consensus 57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 3347999999999999999999986 8999999999988877664 35667999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--eeEEEEe
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQ 421 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~ 421 (567)
|++|+.||.|++||... +..+..+.+|...|.+++|++++..+ ++++.++.|++||+.+.......... ...+.+.
T Consensus 136 l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 213 (388)
T d1erja_ 136 LATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213 (388)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred ceecccccccccccccc-cccccccccccccccccccccccccc-cccccceeeeeeecccccccccccccccccccccc
Confidence 99999999999999987 77788889999999999999987654 58899999999999999887766543 3445555
Q ss_pred c-CCCEEEEEECCCeEEEEECCCCeEEEEe-------cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC-----
Q 008393 422 P-HLGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----- 487 (567)
Q Consensus 422 ~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~----- 487 (567)
+ ++..+++++.|+.|++||.+++.....+ .+|...|.+++|+|++++|++++.| .|++||+.++..
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence 4 6677888899999999999998776655 3578899999999999999999999 999999976532
Q ss_pred ----CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEE------ecCCCEEEE
Q 008393 488 ----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV------STETGYVAS 556 (567)
Q Consensus 488 ----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~------spdg~~l~s 556 (567)
..+......|...|.+++|+|++++|++++.||.|++||+.+++.+ .+.+|.+.|.++++ +|++.+|||
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred cccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence 2345566678889999999999999999999999999999999887 78899999999975 578999999
Q ss_pred EECCCcEEEcC
Q 008393 557 ASHDKFVKLWK 567 (567)
Q Consensus 557 ~s~Dg~I~iWd 567 (567)
|+.||+|+|||
T Consensus 374 ~s~Dg~I~iW~ 384 (388)
T d1erja_ 374 GSGDCKARIWK 384 (388)
T ss_dssp EETTSEEEEEE
T ss_pred EeCCCEEEEEe
Confidence 99999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-37 Score=306.66 Aligned_cols=278 Identities=16% Similarity=0.249 Sum_probs=236.7
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.+.+.+.+++++|+|+.||.+. ++.|.+||+++++....+.+|...|++++|+|++++|++|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 3455677899999999999985 677999999999999999999999999999999999999999999999999885443
Q ss_pred -eEEeccCCCcEEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCE-EEEEECCCeEE
Q 008393 365 -LRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAENVVS 437 (567)
Q Consensus 365 -~~~~~~h~~~V~~l~~~p~~~~li~s~~~--dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~-l~~~~~dg~I~ 437 (567)
...+.+|...|.+++|+|++..++ +++. +..+++|++++++....+.+ .+.+++|+|++.. +++++.|+.|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred cccccccccCccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 356788999999999999987665 5554 56799999999888777654 5788999999886 66788899999
Q ss_pred EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe-------ecCCCceEEEEEeCC
Q 008393 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-------SCNGNKFHSCVFHPT 509 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~-------~~~~~~i~~~~~sp~ 509 (567)
+||+++++....+..|...|++++|+|++++|++++.| .|++||+.++. .+..+ .+|...|.+++|+|+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred cccccccccccccccccccccccccCcccccccccccccccccccccccc---ccccccccccccccccccccccccCCC
Confidence 99999999999999999999999999999999999999 99999998763 33333 346788999999999
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-EeccccC-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|++++.|+.|+|||+++++.+ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence 999999999999999999999877 4554433 233444555677899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-37 Score=304.37 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=233.9
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
..+.+.||.+.|+|++|+|||++||+|+.||.|++||+++++.+..+. .|...|++++|+|++. +++++.|+.+++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence 567889999999999999999999999999999999999999888885 7999999999999986 56677899999999
Q ss_pred cCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
...... .......+...+.+++|++++..++ + +.++.+++|+..... .........+++|+|++..+++++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~-~~~~~i~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 159 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-A-ACYKHIAIYSHGKLT-EVPISYNSSCVALSNDKQFVAVGGQDSK 159 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-E-EESSEEEEEETTEEE-EEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred cCCcccccccccccccccccccccccccccccc-c-ccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 875321 1223345778899999999987444 3 346799999954321 1223346788999999999999999999
Q ss_pred EEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 436 VSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 436 I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
|.+||+++++... ....|...|.+++|+|++++|++++.+ .|++||+.++........+..|...|.+++|+|++.+|
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 239 (299)
T d1nr0a2 160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239 (299)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence 9999999886543 445689999999999999999999999 99999998775555566777889999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEE---Eeccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTM---TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~---~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++.|+.|++||+.++... ....| ...|.++.| +++++|++|+.||.|+|||
T Consensus 240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence 99999999999999876533 33333 455666655 5678999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-36 Score=300.12 Aligned_cols=246 Identities=17% Similarity=0.274 Sum_probs=214.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee--eeeecccCccEEEEEECCCCCeEEEEeC--CCcEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 354 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~--~~~l~~h~~~V~~i~fsp~~~~l~s~s~--dg~I~ 354 (567)
....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+++. ...+..|...|.+++|+|++++|++++. +..++
T Consensus 50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence 4456789999999999999999999999999999999987764 3567889999999999999999999986 45699
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 431 (567)
||++++ +.....+.+|...|.+++|+|+++.++++|+.|+.|++||+++++....+.. .+.++.++|++..+++++
T Consensus 130 v~~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~ 208 (311)
T d1nr0a1 130 VFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 208 (311)
T ss_dssp EEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccc-ccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc
Confidence 999997 6677888999999999999999998888999999999999999998888764 578899999999999999
Q ss_pred CCCeEEEEECCCCeEEEEec-------CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC-ceE
Q 008393 432 AENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KFH 502 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~-------~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~-~i~ 502 (567)
.|+.|++||..++..+..+. +|...|++++|+|++++|++|+.| .|+|||++++ +++.++..+.. ...
T Consensus 209 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~ 285 (311)
T d1nr0a1 209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQ 285 (311)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGC
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccce
Confidence 99999999999998877664 578899999999999999999999 9999999876 67777765543 223
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+.+.+++.+|++++.||.|++||++
T Consensus 286 ~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 286 QLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEecCCEEEEEECCCEEEEEeCC
Confidence 34455566679999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-36 Score=308.23 Aligned_cols=277 Identities=15% Similarity=0.223 Sum_probs=230.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC-
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG- 362 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~- 362 (567)
+.++|+|++|+|||++||+|+.||.|+|||+++++ .+..+.+|...|++|+|+|++++|++|+.|++|+|||+.+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 45789999999999999999999999999998765 667789999999999999999999999999999999998633
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-------eCCeeEEEEecCCCEEEEEECCCe
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.....+.+|...|.+++|+|+++. +++++.|+.|++|++......... ...+.++.|+|++..+++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccc-ceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 234456788999999999999765 558999999999998776543221 345788999999999999999999
Q ss_pred EEEEECCC------------------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 436 VSILDAET------------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 436 I~i~d~~~------------------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|++||... +..+.....|...|.+++|+|+|++|++++.| .|++||+.++ ..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 241 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS 241 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeec
Confidence 99999754 34667778899999999999999999999999 9999999776 67888899
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEEC--CCCcEE----------------------------------------E
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNM--SENKTM----------------------------------------T 534 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~--~~~~~~----------------------------------------~ 534 (567)
+..+|.+++|+|++.+|+ ++.|+.+++|.. ...... .
T Consensus 242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred ccccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence 999999999999997555 556776655543 222110 0
Q ss_pred eccccCCeeEEEEecCC----CEEEEEECCCcEEEcC
Q 008393 535 LTAHEGLIAALAVSTET----GYVASASHDKFVKLWK 567 (567)
Q Consensus 535 ~~~h~~~V~~l~~spdg----~~l~s~s~Dg~I~iWd 567 (567)
...|.+.|+++++.+.+ ..|+|+|.||.|+|||
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 12388899999998755 3589999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-34 Score=288.90 Aligned_cols=275 Identities=15% Similarity=0.250 Sum_probs=235.2
Q ss_pred cCeEEEecCCCccccC--CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeeee
Q 008393 205 KPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 282 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~--~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 282 (567)
...+.|+++|..+++. +.+++||..++.... ......
T Consensus 54 V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~-----------------------------------------~~~~~~ 92 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS-----------------------------------------PVSQLD 92 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCCS-----------------------------------------CSEEEE
T ss_pred EEEEEECCCCCEEEEEECCEEEEEEccCCcccc-----------------------------------------eeEEee
Confidence 4568999999887664 335788776542110 011233
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC--CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~--~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
..+|.+.|.+++|+|||++|++|+.||.|++||+.. .+....+..|...|.+++|+|++.+|++++.|+.|++|++.+
T Consensus 93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~ 172 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999999999999874 456777889999999999999999999999999999999998
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
+.......+|...|.+++|++++.. +++++.|+.|++||+++++.+..+. ..+.+++|+|++..+++++.++.|++
T Consensus 173 -~~~~~~~~~~~~~v~~l~~s~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i 250 (337)
T d1gxra_ 173 -QTLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp -TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -ccccccccccccccccccccccccc-cccccccccccccccccceeecccccccceEEEEEcccccccceecccccccc
Confidence 6777888899999999999999765 4588999999999999999887764 56788999999999999999999999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
||+++++.. ....|...|++++|+|++++|++++.| .|++||+.++ +.+..+. +...|.+++|+|++++|++++
T Consensus 251 ~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 251 LHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp EETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred ccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEcc-CCCCEEEEEEeCCCCEEEEEe
Confidence 999998875 456799999999999999999999999 9999999876 4555443 678899999999999999999
Q ss_pred cCCeEEEEEC
Q 008393 518 CYQSLELWNM 527 (567)
Q Consensus 518 ~dg~I~iwd~ 527 (567)
.|+.|+|||+
T Consensus 326 ~D~~I~vWdl 335 (337)
T d1gxra_ 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-34 Score=281.81 Aligned_cols=283 Identities=17% Similarity=0.321 Sum_probs=224.0
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.++..+.|+||++.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++|+.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence 34677889999999865 36678999999999999999999999999999999999999999875 9999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEE--------------------------------------EcCCCCeEEEEEeCCCcE
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLD--------------------------------------FHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~--------------------------------------~~p~~~~li~s~~~dg~I 397 (567)
|+... .........+...+.... +..... ++++++.|+.|
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i 159 (342)
T d2ovrb2 82 WNAET-GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMV 159 (342)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEETTSCE
T ss_pred ccccc-ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccc-eeeeecCCCeE
Confidence 99875 222222222222221111 111222 34577888899
Q ss_pred EEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 398 RYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
++||+...+.+..+.++ .....+.+++..+++++.|+.|++||++.++.+..+.+|...+.+++++ +++|++++.|
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCC
Confidence 99998888888777654 3455677788999999999999999999999999999999999988876 4699999999
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Ee-----ccccCCeeEEEEec
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVST 549 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~sp 549 (567)
.|++||+........+.....+...+.++.++ ++++++++.||.|++||+++++.+ .+ .+|.+.|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 99999998764333333333445556666554 568999999999999999999876 33 36788899999999
Q ss_pred CCCEEEEEECCCc----EEEcC
Q 008393 550 ETGYVASASHDKF----VKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~----I~iWd 567 (567)
++.+|++|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEeCCCCCeeEEEEEe
Confidence 9999999999986 88986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.2e-33 Score=271.27 Aligned_cols=254 Identities=24% Similarity=0.478 Sum_probs=226.4
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
.+++|+..++ +.+..+++|.+.|.+++|++++.+++++..++.+.+|+....+....+..|...+.++.|++++..|
T Consensus 40 ~i~iWd~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (317)
T d1vyhc1 40 TIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116 (317)
T ss_dssp CEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEE
T ss_pred eEEEEECCCC---CEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceE
Confidence 3444444333 3456678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEe
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQ 421 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~ 421 (567)
++++.|+.+++||+.+ +..+..+.+|...+.+++|++++. ++++++.|+.|++|++.+++....+.. .+..+.+.
T Consensus 117 ~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 194 (317)
T d1vyhc1 117 VSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194 (317)
T ss_dssp EEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EeeccCcceeEeeccc-ceeeeEEccCCCcceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe
Confidence 9999999999999998 677888999999999999999976 566999999999999999998877754 34555555
Q ss_pred cC--------------------CCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEE
Q 008393 422 PH--------------------LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480 (567)
Q Consensus 422 ~~--------------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iw 480 (567)
++ +..+++++.|+.|++||.++++++..+.+|...|.+++|+|++++|++++.| .|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 274 (317)
T d1vyhc1 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274 (317)
T ss_dssp CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred eccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence 54 3568889999999999999999999999999999999999999999999999 99999
Q ss_pred eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
|+.++ +.+..+.+|...|++++|+|++++|++++.|+.|+|||
T Consensus 275 d~~~~---~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 275 DYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99876 67788889999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-33 Score=282.49 Aligned_cols=292 Identities=22% Similarity=0.308 Sum_probs=233.8
Q ss_pred CcCeEEEecCCCccccC--CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 204 SKPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~--~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
....+.|++||..++++ +.+++||..+++....+....... . ........
T Consensus 64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~------------------------~----~~~~~~~~ 115 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN------------------------K----DPENLNTS 115 (388)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------------------------------
T ss_pred cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeeccccccc------------------------c----cccccccc
Confidence 45578999999987663 456999999886543322111100 0 00001223
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
....|...|++++|+|+|++|++|+.||.|++||..+++.+..+.+|...|.++.|++++..+++++.++.|++||+.+
T Consensus 116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~- 194 (388)
T d1erja_ 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT- 194 (388)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-
T ss_pred cccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----------CCeeEEEEecCCCEEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~ 431 (567)
........ +.....++.+.+....++++++.|+.|++||+.++.....+. ..+..+.|+|++..+++++
T Consensus 195 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 195 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 55555554 445566677776556678899999999999999998776653 3578899999999999999
Q ss_pred CCCeEEEEECCCCe------------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 432 AENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 432 ~dg~I~i~d~~~~~------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
.|+.|++||+.++. .......|...|.+++|+|++++|++|+.| .|++||++++ +++..+.+|.
T Consensus 274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~ 350 (388)
T d1erja_ 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR 350 (388)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCC
Confidence 99999999987643 344556788999999999999999999999 9999999877 7888999999
Q ss_pred CceEEEEE------eCCCCeEEEEEcCCeEEEEECC
Q 008393 499 NKFHSCVF------HPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 499 ~~i~~~~~------sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
..|.++++ +|++.+|++++.||.|+||+++
T Consensus 351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999875 6789999999999999999975
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-32 Score=273.47 Aligned_cols=277 Identities=19% Similarity=0.328 Sum_probs=222.3
Q ss_pred eeeeeccCCCCe-EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V-~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+..+|+||...| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|.+.|++++|+++ .+|++|+.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 456799999886 56555 6789999999999999999999999999999999999999985 5899999999999999
Q ss_pred cCCCCceeEEeccCC--CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----------------------
Q 008393 358 ADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------- 413 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~--~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---------------------- 413 (567)
+.. .........+. ..+..+.+.+++ .++++++.|+.|++||+.+.........
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 81 IKK-GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred ccc-ccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence 987 44444443333 334455666664 4666999999999999987654432210
Q ss_pred --CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 414 --GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 414 --~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
......+.+++..++.+..|+.|++||+++++.+..+.++...+.++.|++++.++++++.| .|++||+.++ ..
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~ 235 (355)
T d1nexb2 159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 235 (355)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---cc
Confidence 11234566778899999999999999999999999999999999999999999999999999 9999999876 77
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEE-EEecCCCEEEEEECCCcEEEcC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL-AVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l-~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+.+|...|.++.+++ ++|++++.||.|++||+.+.... +..|...+.++ .+++++.+|++| .||.|+|||
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred cccccccccccccccccc--ceeeeeeccccccccccccccee-cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence 888899999999998864 68999999999999999987654 34455556555 456777766665 589999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-32 Score=271.18 Aligned_cols=290 Identities=20% Similarity=0.297 Sum_probs=232.9
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc--CccEEEEEEC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFS 338 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fs 338 (567)
..|+.+++||..++ +.+..+.+|.+.|++++|+++ .+|++|+.|+.|++|+....+.......+ ...+..+.+.
T Consensus 30 s~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (355)
T d1nexb2 30 ADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105 (355)
T ss_dssp ETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEE
T ss_pred eCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccc
Confidence 45778999998876 678889999999999999986 58999999999999999998877666543 3445667788
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCce----------------------eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYS----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
+++.++++++.|+.|++||+.+.... +.....|...+...... +. +++++..|+.
T Consensus 106 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~~~~~d~~ 182 (355)
T d1nexb2 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GN-IVVSGSYDNT 182 (355)
T ss_dssp TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE--TT-EEEEEETTSC
T ss_pred cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc--cc-eeeeecccce
Confidence 89999999999999999999763211 12223345555554443 43 5668999999
Q ss_pred EEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe
Q 008393 397 IRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|++||+.+++.+..+.+ ....+.+++.+..+++++.|+.|++||.+++..+..+.+|...|.+++|+ +++|++++
T Consensus 183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~ 260 (355)
T d1nexb2 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 260 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEEC
T ss_pred eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeee
Confidence 99999999998887764 45678899999999999999999999999999999999999999999986 46899999
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecCCCceEEE-EEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEec
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST 549 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~-~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp 549 (567)
.| .|++||+++.. ..+..|...+..+ .+++++. +++++.|+.|+|||+++++.+ .+.+|.+.|.+++|+|
T Consensus 261 ~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~ 334 (355)
T d1nexb2 261 ADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334 (355)
T ss_dssp TTSEEEEEETTTCC-----EEEEEECTTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred cccccccccccccc-----eecccccCCceEEEEEcCCCC-EEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence 99 99999997652 2334445555555 4566666 555567999999999999877 4678999999999998
Q ss_pred CCCEEEEEECCCcEEEc
Q 008393 550 ETGYVASASHDKFVKLW 566 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iW 566 (567)
+ .+|++++.||.++||
T Consensus 335 ~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 335 K-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp T-EEEEEEESSSCEEEE
T ss_pred C-eEEEEEECCCcEEEE
Confidence 6 478889999998776
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-32 Score=260.18 Aligned_cols=274 Identities=21% Similarity=0.423 Sum_probs=221.1
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
++.+..+..|...|+|++| ||++||+|+.||+|+|||+.+++++.++.+|...|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 4567778889999999765 7899999999999999999999999999999999999987 56799999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---EeCC-eeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGG-TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~---~~~~-~~~~~~~~~~~~l~~~~~ 432 (567)
++.. +........+...... +..... .++++..++.+++|+......... +..+ .....+......+++++.
T Consensus 81 ~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~ 156 (293)
T d1p22a2 81 DVNT-GEMLNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG 156 (293)
T ss_dssp ESSS-CCEEEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred cccc-cccccccccccccccc--cccccc-ceeecccccceeEeeccccccccccccccccccccccceecccccccccC
Confidence 9998 4444444444444333 333334 455888999999999987664332 2222 223334455678889999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
|+.|++||.++++.+..+.++...|..+.++ +.+|++++.| .|++||+++. ..+.....+...+. .+.+++.
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~--~~~~~~~ 229 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVR--CIRFDNK 229 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEE--EEECCSS
T ss_pred CCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeee--eccccce
Confidence 9999999999999999999999999888776 5689999999 9999999876 66777777777765 4667888
Q ss_pred eEEEEEcCCeEEEEECCCC---------c-EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSEN---------K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~---------~-~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.||.|++||+... . ...+.+|.+.|++++| ++.+|+||+.||+|+|||
T Consensus 230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 9999999999999997532 2 2367899999999998 467899999999999998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-32 Score=271.08 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=201.4
Q ss_pred eeeeeccC-CCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCeee--------eeecccCccEEEEEECCCCCeEEEE
Q 008393 279 EANSVRAS-TSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLATS 347 (567)
Q Consensus 279 ~~~~l~~h-~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~~~~--------~~l~~h~~~V~~i~fsp~~~~l~s~ 347 (567)
.+..+.+| ...|++++|+| +|.+||+|+.||+|+|||+..++.. ..+..|...|.+++|++++++|+++
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence 44566677 46899999998 6789999999999999998754432 2345688899999999999999887
Q ss_pred eC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCC
Q 008393 348 SF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 425 (567)
Q Consensus 348 s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (567)
+. ++.+++|+.++ +..+..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+.
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~------------- 199 (325)
T d1pgua1 134 GEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR------------- 199 (325)
T ss_dssp ECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-------------
T ss_pred eccccceEEEEeecc-cccceeeeecccccccccccccccceEEEeecccccccccccccccceecc-------------
Confidence 65 67899999987 678888999999999999999998888899999999999987665443322
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
.+..|...|.+++|+|+ +.+|++++.| .|++||++++ +++..+..|...+..
T Consensus 200 -----------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~ 253 (325)
T d1pgua1 200 -----------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQG 253 (325)
T ss_dssp -----------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCS
T ss_pred -----------------------cccCCCCccEEeeeccccceeccccccccceeeeeeccc---ccccccccccccccc
Confidence 23457888999999996 6899999999 9999999876 677888888777665
Q ss_pred EEEe---CCCCeEEEEEcCCeEEEEECCCCcEE-EeccccC--CeeEEEEecC-CCEEEEEECCCcEEEcC
Q 008393 504 CVFH---PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAALAVSTE-TGYVASASHDKFVKLWK 567 (567)
Q Consensus 504 ~~~s---p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~--~V~~l~~spd-g~~l~s~s~Dg~I~iWd 567 (567)
+.|+ +++.+|++++.|+.|+|||+++++.+ .+..|.. .+..+++.+. +.+|++++.||.|+|||
T Consensus 254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 5555 78999999999999999999999877 3444443 3444544433 34899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-32 Score=265.46 Aligned_cols=267 Identities=12% Similarity=0.181 Sum_probs=224.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+.+++|++|.++|++++|++ |++|+.||+|++||+.++ ..+|...|.++.|+++. .+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence 57889999999999999987 999999999999998764 35799999999998764 689999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC-eE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN-VV 436 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~I 436 (567)
+.. . .+...+.++++.+++. ++ ..+.++.+.+|+..+++.+..+.......++.+++..+++++.++ .|
T Consensus 74 ~~~-----~---~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 143 (287)
T d1pgua2 74 ITK-----H---EFGSQPKVASANNDGF-TA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 143 (287)
T ss_dssp EEE-----E---ECSSCEEEEEECSSSE-EE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred ccc-----c---ccccceeeeeeccCCc-eE-EEeecccceeeeccceeeeeeccccceeeeeeccCcceeeecccccee
Confidence 864 1 1345577888888754 44 345577899999999999999988888888999999999988875 79
Q ss_pred EEEECCCCeEEEEec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC-----
Q 008393 437 SILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT----- 509 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~----- 509 (567)
++|++...+....+. .|...+++++|+|++.+|++++.| .|++||+.++. .....+..|...|.+++|+|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC----
T ss_pred eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc--cccccccccccccceeeecccccccc
Confidence 999998877666655 477889999999999999999999 99999997652 122345678889999999874
Q ss_pred -----CCeEEEEEcCCeEEEEECCCCc-EE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 510 -----YPSLLVIGCYQSLELWNMSENK-TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 510 -----~~~l~~~~~dg~I~iwd~~~~~-~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.+|++++.|+.|+|||+.++. .+ .+.+|...|++++|+|++ .|++++.||.|+|||
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence 4689999999999999997743 44 566899999999999986 688999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-32 Score=272.64 Aligned_cols=251 Identities=16% Similarity=0.187 Sum_probs=202.3
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee--eeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~--~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
..+..+++|.++|.+++|+|++++|++|+.|++|+|||+.++.. ...+.+|...|++++|+|++++|++++.|+.|++
T Consensus 42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i 121 (371)
T d1k8kc_ 42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121 (371)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCccee
Confidence 46677899999999999999999999999999999999987654 4456688999999999999999999999999999
Q ss_pred EEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe------------------eeEEEe--
Q 008393 356 WDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------CTRVFK-- 412 (567)
Q Consensus 356 wd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~------------------~~~~~~-- 412 (567)
|+++..... ......|...|.+++|+|++. +|++|+.|+.|++||+.... .+....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (371)
T d1k8kc_ 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 200 (371)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred eeeeccccccccccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence 998764432 344567899999999999976 45699999999999986532 222222
Q ss_pred -CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc--
Q 008393 413 -GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE-- 489 (567)
Q Consensus 413 -~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~-- 489 (567)
..+..++|+|++..+++++.|+.|++||+.+++.+..+..|..+|.+++|++++++|++|.++.+++|.........
T Consensus 201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~ 280 (371)
T d1k8kc_ 201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 280 (371)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEE
T ss_pred cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEE
Confidence 24678999999999999999999999999999999999999999999999999999988776655555433211000
Q ss_pred --------eE----------------------------EEeecCCCceEEEEEeCCC----CeEEEEEcCCeEEEEECCC
Q 008393 490 --------CV----------------------------HELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 490 --------~i----------------------------~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~I~iwd~~~ 529 (567)
.. .....|.+.|.++++.+.+ ..|++++.||.|+|||+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 00 0001367789999988754 3588999999999999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-31 Score=262.07 Aligned_cols=288 Identities=13% Similarity=0.066 Sum_probs=217.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee---eecccCccEEEEEECCCC-CeEEEEeCCCcE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLEEHSSLITDVRFSPSM-PRLATSSFDKTV 353 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~---~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I 353 (567)
+.+...++|.+.|++|+|+|++++||+|+.||+|+|||+++..... ...+|...|.+++|++++ .+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 4567788999999999999999999999999999999987654433 333699999999999864 589999999999
Q ss_pred EEEEcCCCCceeEEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----e-----CCeeEEEEecC
Q 008393 354 RVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K-----GGTAQMRFQPH 423 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~-----~~~~~~~~~~~ 423 (567)
++|++..... ......+. .......+.++ ...+++++.|+.+++||++........ . .....+.+.+.
T Consensus 82 ~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 82 LKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred eeeecccccc-cccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence 9999987444 34444343 33344444444 446669999999999998764433222 1 12355678888
Q ss_pred CCEEEEEECCCeEEEEECCCCeE---EEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCc------eE-
Q 008393 424 LGRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGE------CV- 491 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~------~i- 491 (567)
...+++++.|+.|++||+..... ......+...+.++.+.+ ++..+++++.| .+.+|++....... ..
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 89999999999999999976532 223334455566666655 67789999988 99999986542211 11
Q ss_pred -----EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 492 -----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 492 -----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.....+...+.+++|+|++++|++|+.||.|++||+.+++.+....+...+..++|+|++++|++|+.|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence 112345567899999999999999999999999999999888544444566778899999999999989887776
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
.
T Consensus 320 ~ 320 (342)
T d1yfqa_ 320 A 320 (342)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=7.4e-29 Score=245.55 Aligned_cols=243 Identities=23% Similarity=0.426 Sum_probs=210.9
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
+.+..+..|...|.+++|+|++++|++|+.|+.+.+|+.... +....+.+|...+....+.. +..++....|...
T Consensus 88 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 166 (340)
T d1tbga_ 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTC 166 (340)
T ss_dssp EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEE
T ss_pred eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccc
Confidence 355667889999999999999999999999999999997643 44566778887776665554 4578888899999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ 430 (567)
..|.... .........+...+..+.+.+.+. ++++++.|+.|++||+++++++..+.+ .+.+++|+|++..++++
T Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~ 244 (340)
T d1tbga_ 167 ALWDIET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244 (340)
T ss_dssp EEEETTT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccc-ccccccccccceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE
Confidence 9999887 555666667888899999998865 566999999999999999999988765 56889999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 431 AAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
+.|+.|++||++....+..+. .+...|.+++|+|++++|++|+.| .|++||+.++ +++..+.+|...|.+++|+
T Consensus 245 s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s 321 (340)
T d1tbga_ 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEEC
T ss_pred eCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEe
Confidence 999999999999998877664 466789999999999999999999 9999999876 7888999999999999999
Q ss_pred CCCCeEEEEEcCCeEEEEE
Q 008393 508 PTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd 526 (567)
|++.+|++++.||.|+|||
T Consensus 322 ~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEccCCEEEEeC
Confidence 9999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=6.4e-30 Score=250.04 Aligned_cols=239 Identities=15% Similarity=0.175 Sum_probs=196.5
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
|+..+.+.+|...|++|+|+|++++|++|+.||+|++||+++ +..+..+ .+|...|.+++|+|++. ++ +++.|+.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGD-LF-TVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSC-EE-EEETTTEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCCcEEEEEeeccce-ee-cccceeeE
Confidence 567889999999999999999999999999999999999998 5555655 47899999999999975 44 67789999
Q ss_pred EEEECCCCee------eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEE
Q 008393 398 RYWSINNGSC------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 398 ~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s 471 (567)
++|+...... ..........+.+++++.. ++++.++.+.+|+..... ... ....+.+++|+|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-~~~~~~~~i~~~~~~~~~--~~~--~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI-AVAACYKHIAIYSHGKLT--EVP--ISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC-EEEEESSEEEEEETTEEE--EEE--CSSCEEEEEECTTSCEEEE
T ss_pred EEeccCCcccccccccccccccccccccccccccc-cccccccccccccccccc--ccc--ccccccccccccccccccc
Confidence 9999865432 2233456778899998665 455567789999965432 222 3456889999999999999
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----EeccccCCeeEEE
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLIAALA 546 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~~~V~~l~ 546 (567)
++.| .|++||++++.. .......|...|.+++|+|++.+|++++.++.|++||+.++... .+.+|...|++++
T Consensus 154 g~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 231 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231 (299)
T ss_dssp EETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999 999999976521 12234467889999999999999999999999999999887655 4567999999999
Q ss_pred EecCCCEEEEEECCCcEEEcC
Q 008393 547 VSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+|++++|++|+.||.|+|||
T Consensus 232 ~s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 232 WSPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccceEEEcCCCEEEEEE
Confidence 999999999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.8e-30 Score=261.41 Aligned_cols=283 Identities=16% Similarity=0.214 Sum_probs=210.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee------eeeecccCccEEEEEE------CC-CCCeEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRF------SP-SMPRLA 345 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~------~~~l~~h~~~V~~i~f------sp-~~~~l~ 345 (567)
.....++|.+.|+++++++ ++|++|+.|+.|+|||..+.+. ......|...+..+.+ .. ++.+++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence 4567789999999999875 6999999999999999765432 2222334444433322 11 234688
Q ss_pred EEeCCCcEEEEEcCCCCceeE----Ee-----ccCCCcEEEEEEcCCC----CeEEEEEeCCCcEEEEECCCCe------
Q 008393 346 TSSFDKTVRVWDADNPGYSLR----TF-----MGHSASVMSLDFHPNK----DDLICSCDGDGEIRYWSINNGS------ 406 (567)
Q Consensus 346 s~s~dg~I~iwd~~~~~~~~~----~~-----~~h~~~V~~l~~~p~~----~~li~s~~~dg~I~iwd~~~~~------ 406 (567)
+++.||.|++|++........ .. ..+...+..++|.++. ..++++++.||.|++|++....
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence 999999999999864322111 11 1345667888887764 2566789999999999975321
Q ss_pred -----e----eEEE------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe------cCCCCCeeEEEEcCC
Q 008393 407 -----C----TRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPS 465 (567)
Q Consensus 407 -----~----~~~~------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~------~~h~~~V~~l~~sp~ 465 (567)
. .... ...+.+++|+|++ .+++++.|+.|++||+.+++.+..+ .+|...|++|+|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence 0 0111 1235688999985 8889999999999999999887654 468899999999999
Q ss_pred CCEEEEEeCC-e---EEEEeCCCCCCCceEEEe-------------ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 466 GELLASVSED-S---VRVWTVGSGSEGECVHEL-------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 466 g~~l~s~s~d-~---I~iwd~~~~~~~~~i~~~-------------~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
|++|++++.| . |++||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+.
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred cceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 9999999987 3 999999877 333333 4788999999999999999999999999999999
Q ss_pred CCcEE-EeccccCCe---------------------eEEEEecCC----------CEEEEEECCCcEEEcC
Q 008393 529 ENKTM-TLTAHEGLI---------------------AALAVSTET----------GYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~-~~~~h~~~V---------------------~~l~~spdg----------~~l~s~s~Dg~I~iWd 567 (567)
+++++ ++.+|...| .++.|.+.+ ..|++++.|+.|++|+
T Consensus 320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 99877 677776544 445554432 3488899999999984
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=2.5e-29 Score=251.58 Aligned_cols=276 Identities=8% Similarity=-0.029 Sum_probs=213.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
+|...|.+++|+|||++|++++.+. .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+ .
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~ 117 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-G 117 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-C
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc-c
Confidence 6889999999999999998876553 7999999887655 5678999999999999999999999999999999987 6
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEE---------eCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSC---------DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~---------~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~ 431 (567)
.....+..|...+.+++|+|+|..++++. ..++.+++||+.+++....... ....+.|+|++..+++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence 67778888999999999999998777543 2345799999999887665543 456788999999999999
Q ss_pred CCCeEEEEECCCCe-------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 432 AENVVSILDAETQA-------CRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 432 ~dg~I~i~d~~~~~-------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
.++.+.+||..... ....+..|...+..++|++++..++++..+ ..++|.+.... .....+..+...
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPLESS 275 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEECSSE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc--CceeEeeecCCC
Confidence 99999999976543 233445566666677788888777665543 23344432211 122334444455
Q ss_pred eEEEEEeCCC---CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 501 FHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 501 i~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+.+...+ .+++.++.++.|++||+.+++...+ .+.|.+++|+|||++|++++.||.|++||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence 5555554443 3567777888999999999876544 34589999999999999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7.7e-28 Score=239.00 Aligned_cols=240 Identities=13% Similarity=0.168 Sum_probs=184.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCC-cEEEEeCCC--Ceeeeeeccc-CccEEEEEECC--CCCeEEEEeCCCcEEEEEcCCCC
Q 008393 289 KVICCHFSSDGKLLATGGHDK-KAVLWHTDT--LKSKTNLEEH-SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg-~I~vwd~~~--~~~~~~l~~h-~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.+++++|+|+|+.||.++.+. .|+.|+... ...+..+.+| ...|++++|+| ++.+|++|+.||+|+|||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 457899999999999886544 355666543 3445667777 46799999998 56799999999999999987522
Q ss_pred c-------eeEEeccCCCcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 363 Y-------SLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 363 ~-------~~~~~~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
. ....+..|.+.|.+++|++++..+++++. .++.+++|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~------------------------------ 148 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS------------------------------ 148 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT------------------------------
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc------------------------------
Confidence 1 11234568888999999998877664332 345555655544
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCE-EEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC-CC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT-YP 511 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~-~~ 511 (567)
++.+..+.+|...|.+++|+|++.+ +++++.| .|++||+...+....+.....+...|.+++|+|+ +.
T Consensus 149 ---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~ 219 (325)
T d1pgua1 149 ---------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 219 (325)
T ss_dssp ---------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred ---------cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccce
Confidence 4455567789999999999998875 6778888 9999999766433444445567788999999997 57
Q ss_pred eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe---cCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS---TETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s---pdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.|+.|++||+++++.+ .+.+|...+.++.|+ +++++|++++.|+.|+|||
T Consensus 220 ~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd 279 (325)
T d1pgua1 220 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 279 (325)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred eccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence 8889999999999999999877 677788877766665 7899999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.4e-26 Score=228.35 Aligned_cols=240 Identities=29% Similarity=0.501 Sum_probs=195.1
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 393 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~ 393 (567)
|+..+.+....|++|.+.|.+ +++++|++|+||+.||+|+|||+.+ ++++.++.+|...|.+++|+++ ++++|+.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDN---IIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETT---EEEEEET
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCCC---cccccee
Confidence 566677888999999998865 3566789999999999999999988 7788999999999999999864 6779999
Q ss_pred CCcEEEEECCCCeeeEEEeC-----------------------------------------CeeEEEEecCCCEEEEEEC
Q 008393 394 DGEIRYWSINNGSCTRVFKG-----------------------------------------GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~~ 432 (567)
|+.+++|+............ ......+......+++++.
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 155 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence 99999999887654332211 0011223445567888999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
++.|++||.+..+.+..+.+|...+..+. +++.+|++++.| .|++||++.+ ..+..+..|...+.++.+++ +
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~--~ 228 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD--N 228 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET--T
T ss_pred CCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC--C
Confidence 99999999999999999999887776555 468899999999 9999999776 67888888988888877765 5
Q ss_pred eEEEEEcCCeEEEEECCCCcEE-Eec---cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.|+.|++||+...+.. .+. .|...+.++.+ +++++++|+.||.|+|||
T Consensus 229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd 286 (342)
T d2ovrb2 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWD 286 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEE
Confidence 8999999999999999988766 333 35556666665 467999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.9e-27 Score=230.17 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=196.2
Q ss_pred eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
+.+..+.+|.+.|++|+|+|++++||+|+.||+|+|||++.... .+....+|...|.+++|++++..+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 45677789999999999999999999999999999999976443 2334447999999999999888889999999999
Q ss_pred EEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEEECCCeEEEEECCCC----eEEEEecCC--CCCeeEEEEcCCCC
Q 008393 398 RYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGH--TKPIDSVCWDPSGE 467 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h--~~~V~~l~~sp~g~ 467 (567)
++|++........... ......+.+....+++++.++.+.+||++.. ........+ ......+.+.+++.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 9999998877666543 2344556778889999999999999998654 223333332 23445677788899
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe-CCCCeEEEEEcCCeEEEEECCCCcEE------------
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTYPSLLVIGCYQSLELWNMSENKTM------------ 533 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg~I~iwd~~~~~~~------------ 533 (567)
.+++++.| .|++||+..................+.++.+. .++..+++++.||.+.+|++......
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 99999999 99999998876655555555555666666554 46778999999999999998654311
Q ss_pred ----EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 534 ----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ----~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....|...|++++|+|++++||||+.||.|+|||
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence 1235667899999999999999999999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.4e-25 Score=213.31 Aligned_cols=250 Identities=21% Similarity=0.375 Sum_probs=201.7
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 342 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~ 342 (567)
|+.+++||..++ +.+..+++|.+.|++++| ++++|++|+.|+.|++|++..+........+...... +.....
T Consensus 34 Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 106 (293)
T d1p22a2 34 DNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNG 106 (293)
T ss_dssp SSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTT
T ss_pred CCeEEEEECCCC---cEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccc--cccccc
Confidence 334445544433 466788899999999987 5789999999999999999998888777766554443 445566
Q ss_pred eEEEEeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE-EE
Q 008393 343 RLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MR 419 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~-~~ 419 (567)
.++++..++.+++|+...... ....+..|...|..+.+.+. .+++++.|+.|++||+++++.+..+.+.... ..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 183 (293)
T d1p22a2 107 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183 (293)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCCCceeeecCCCCcEEEEEccccccccc
Confidence 899999999999999986432 34566788999999888754 4568889999999999999999888765433 34
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC------CCCceEE
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVH 492 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~------~~~~~i~ 492 (567)
+.+++..+++++.|+.|++||+++.+.+..+.+|...+.. +.+++.+|++++.| .|++||+... ....++.
T Consensus 184 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (293)
T d1p22a2 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261 (293)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred ccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeE
Confidence 4556778999999999999999999999999999888865 55778899999999 9999998643 2235778
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
.+.+|...|.+++|+ +.+|++++.|++|+|||
T Consensus 262 ~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 262 TLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 889999999999984 56899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-25 Score=228.96 Aligned_cols=242 Identities=17% Similarity=0.193 Sum_probs=176.9
Q ss_pred eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-----eeEEeccCCCcEEEEEE------cCCCCeEEEEE
Q 008393 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----SLRTFMGHSASVMSLDF------HPNKDDLICSC 391 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~------~p~~~~li~s~ 391 (567)
...++|...|.++++++ ++|++++.|++|+|||..+... .......|...+..+.+ ......+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 44578999999999875 6999999999999999765321 12233345544433322 22233577799
Q ss_pred eCCCcEEEEECCCCeeeEEE-------------eCCeeEEEEecC-----CCEEEEEECCCeEEEEECCCC---------
Q 008393 392 DGDGEIRYWSINNGSCTRVF-------------KGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--------- 444 (567)
Q Consensus 392 ~~dg~I~iwd~~~~~~~~~~-------------~~~~~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~~--------- 444 (567)
+.||.|++|++........+ ......+++.++ +..+++++.|+.+.+||+...
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 99999999997654322111 112345566654 356788889999999997421
Q ss_pred ------e---EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce---EEEeecCCCceEEEEEeCCCC
Q 008393 445 ------A---CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC---VHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 445 ------~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~---i~~~~~~~~~i~~~~~sp~~~ 511 (567)
. .......+...+.+++|+|++ +|++|+.| .|+|||+.+++.... ...+.+|...|.+++|+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 0 111122355678999999998 88999999 999999987632221 224456888999999999999
Q ss_pred eEEEEEcCC---eEEEEECCCCcEE-Ee-------------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQ---SLELWNMSENKTM-TL-------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg---~I~iwd~~~~~~~-~~-------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.|+ .|++||+.+++.+ .+ .+|.+.|++|+|+|++++|+||+.|++|+|||
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 999999987 5999999988765 22 37999999999999999999999999999996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=2.9e-23 Score=201.58 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=210.9
Q ss_pred EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEc
Q 008393 303 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381 (567)
Q Consensus 303 asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~ 381 (567)
++++.|++|.|||+++++.+.++... ..+..++|+|+|++|+ +++.++.|++||+.+ ...+..+..+. .+..+.|+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEEC
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeeccc-cccccccc
Confidence 45678999999999999999988754 4578999999999875 566789999999998 67777777665 47899999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCee
Q 008393 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 382 p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
+++..+++++..++.+.+|+..+++....+.. ....+.+++++..++++.. ++.+.+|+..+.+.+..+..+ ..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPK 161 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEE
T ss_pred cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCce
Confidence 99999998898999999999999998888765 4567889999998877665 778999999999988888754 5578
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEE
Q 008393 459 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTM 533 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~ 533 (567)
.+++++++..+++++.+ .+.+|+.... .....+. .......++|++++..+++++.+ +.|++||+.+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~ 237 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred EEEeeccccceeeecccccccccccccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence 89999999998888876 6777877544 3333333 44567889999999998877654 58999999999887
Q ss_pred EeccccCCeeEEEEecCCCEE-EEEECCCcEEEcC
Q 008393 534 TLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 567 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iWd 567 (567)
....+...+.+++|+|||++| ++++.|+.|++||
T Consensus 238 ~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 554555678999999999986 5677899999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=2.8e-25 Score=228.95 Aligned_cols=301 Identities=12% Similarity=0.055 Sum_probs=218.4
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-----ecccCccEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-----LEEHSSLITDVR 336 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~-----l~~h~~~V~~i~ 336 (567)
.++.+++||..++ +.+.++..|. .+..++|||||++|++++.|+.|++||+.+++.... ..+|...+.+++
T Consensus 40 ~dg~v~vwD~~t~---~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (426)
T d1hzua2 40 DAGQIALVDGDSK---KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115 (426)
T ss_dssp TTTEEEEEETTTC---SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCS
T ss_pred CCCEEEEEECCCC---cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeee
Confidence 4668899998877 6677777774 589999999999999999999999999998875433 236777788889
Q ss_pred ECCCCCeEEEE-eCCCcEEEEEcCCCCceeEEeccCC-----------CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 337 FSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHS-----------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 337 fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~-----------~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
|+|||++|+++ ..++.+++||..+ ...+..+..|. .....+.+++++..++++....+.+.+++...
T Consensus 116 ~spDG~~l~v~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 116 KGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp TTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred ecCCCCEEEEeecCCCeEEEEcCCc-cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 99999987555 5789999999998 55555555443 34455666666666666666666676776665
Q ss_pred CeeeE--EEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCC--CCCeeEEEEcCCCC--EEEEE-eC
Q 008393 405 GSCTR--VFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGE--LLASV-SE 474 (567)
Q Consensus 405 ~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h--~~~V~~l~~sp~g~--~l~s~-s~ 474 (567)
..... .+. .....+.++|++.+++++.. +..+.+++..+++.+..+... ......+.+...+. .++.. +.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 274 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCC
Confidence 54322 222 34567899999999888876 568999999999888776532 22233344333322 22222 23
Q ss_pred C-eEEEEeCCCCC----CCceEEEeecCCCceEEEEEeCCCCeEEE-------EEcCCeEEEEECCCCcEE-E-------
Q 008393 475 D-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLV-------IGCYQSLELWNMSENKTM-T------- 534 (567)
Q Consensus 475 d-~I~iwd~~~~~----~~~~i~~~~~~~~~i~~~~~sp~~~~l~~-------~~~dg~I~iwd~~~~~~~-~------- 534 (567)
+ .+.+|+..... ..+....+.+|...+..++|+|++++|++ +..+++|+|||+.+++.. +
T Consensus 275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~ 354 (426)
T d1hzua2 275 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 354 (426)
T ss_dssp TCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred CceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh
Confidence 4 77788775432 23677889999999999999999999996 345679999999988654 2
Q ss_pred --eccccCCeeEEEEecCCCEEEEE-----ECCCcEEEcC
Q 008393 535 --LTAHEGLIAALAVSTETGYVASA-----SHDKFVKLWK 567 (567)
Q Consensus 535 --~~~h~~~V~~l~~spdg~~l~s~-----s~Dg~I~iWd 567 (567)
+..|...|.+++|||||++|+.+ +.||.|+|||
T Consensus 355 ~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred cccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence 23556679999999999977443 3578899996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.8e-24 Score=208.23 Aligned_cols=245 Identities=11% Similarity=0.137 Sum_probs=193.8
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
.+..|+.+++|+..++ .++|+..|.+++|++++ .+++++.|++|++|++...+ ....+.++.+.
T Consensus 26 sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~ 89 (287)
T d1pgua2 26 SGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASAN 89 (287)
T ss_dssp EEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeec
Confidence 4556888999987654 46899999999999765 67899999999999875432 33457788999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CC
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GG 414 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~ 414 (567)
+++..++++ .++.+.+|+..+ +..+..+.. ...+. ++++++..+++++..++.|++|++........+. ..
T Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 164 (287)
T d1pgua2 90 NDGFTAVLT-NDDDLLILQSFT-GDIIKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164 (287)
T ss_dssp SSSEEEEEE-TTSEEEEEETTT-CCEEEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred cCCceEEEe-ecccceeeeccc-eeeeeeccc-cceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCc
Confidence 888666655 555688999887 555565553 33444 4556666666555555689999998766655543 45
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCC----------CCEEEEEeCC-eEEEEeC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPS----------GELLASVSED-SVRVWTV 482 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~----------g~~l~s~s~d-~I~iwd~ 482 (567)
+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+|. +.+|++|+.| .|+|||+
T Consensus 165 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~ 244 (287)
T d1pgua2 165 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244 (287)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred eeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence 7889999999999999999999999999998765 46789999999999874 4689999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 483 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
+.. ...+..+.+|...|.+++|++++ .|++++.|+.|++|++
T Consensus 245 ~~~--~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 245 KRP--MKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SCT--TCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCC--CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 753 25677788899999999999986 5899999999999986
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=1.2e-24 Score=224.36 Aligned_cols=298 Identities=11% Similarity=0.025 Sum_probs=211.7
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--ee---ecccCccEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TN---LEEHSSLITDVR 336 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~---l~~h~~~V~~i~ 336 (567)
.++.+.+||..++ +.+..+..|. .+..++|||||++|++++.|+.|++||+.+++.. .. ..+|...+.+..
T Consensus 40 d~g~v~v~D~~t~---~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (432)
T d1qksa2 40 DAGQIALIDGSTY---EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115 (432)
T ss_dssp TTTEEEEEETTTC---CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CCCEEEEEECCCC---cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecc
Confidence 3456889998776 5677777664 6999999999999999999999999999887643 22 336777778888
Q ss_pred ECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEecc-----------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 337 FSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 337 fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
|+|||++| ++++.++.|+|||..+ +..+..+.. +......+.+++++..++++...++.|.+||..+
T Consensus 116 ~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 116 EGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEcCCCCeEEEEeCcc-ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 89999976 6788899999999997 555555443 4456778899999999998999999999999998
Q ss_pred CeeeEE--Ee--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC-----CCCCeeEEEEcCCCCEEEEEeC
Q 008393 405 GSCTRV--FK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 405 ~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-----h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+.... +. .....+.|+|++.++++++. ++.+.++|..+++.+..+.. |........+...+.+.++...
T Consensus 195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~l 274 (432)
T d1qksa2 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274 (432)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBS
T ss_pred CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceeccccc
Confidence 775443 33 24578999999998888877 56899999999888776543 3344445555555555555543
Q ss_pred -C-eEEEEeCCCCCC----CceEEEeecCCCceE-------------------------EEEEeCCCCeEEEEEcCCeEE
Q 008393 475 -D-SVRVWTVGSGSE----GECVHELSCNGNKFH-------------------------SCVFHPTYPSLLVIGCYQSLE 523 (567)
Q Consensus 475 -d-~I~iwd~~~~~~----~~~i~~~~~~~~~i~-------------------------~~~~sp~~~~l~~~~~dg~I~ 523 (567)
+ .|.+|+...... .+....+..+..... .+++ ||++.|++++.|+.++
T Consensus 275 g~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k 353 (432)
T d1qksa2 275 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFK 353 (432)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEE
T ss_pred CCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceE
Confidence 3 788887654321 112222222211111 1222 5566666666666777
Q ss_pred EEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE-----CCCcEEEcC
Q 008393 524 LWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS-----HDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-----~Dg~I~iWd 567 (567)
+|++.++. .+..|...|.+++|+|||++|+.+. .||.|+|||
T Consensus 354 ~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 354 TLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 77654332 2335777899999999999886554 468899996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=4.3e-21 Score=185.97 Aligned_cols=260 Identities=15% Similarity=0.194 Sum_probs=208.5
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.+..+.+||..++ +.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..+.|+++
T Consensus 10 ~~~~v~v~D~~t~---~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~ 84 (301)
T d1l0qa2 10 ESDNISVIDVTSN---KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPD 84 (301)
T ss_dssp TTTEEEEEETTTT---EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTT
T ss_pred CCCEEEEEECCCC---eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccc
Confidence 3456889998887 455555543 4578999999999875 566789999999999999999987764 689999999
Q ss_pred CCeEEE-EeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeE
Q 008393 341 MPRLAT-SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQ 417 (567)
Q Consensus 341 ~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~ 417 (567)
+.++++ +..++.+.+|+..+ +.....+. +...+.+++|+|++..+++++..++.+.+|+..+...+..+.. ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (301)
T d1l0qa2 85 GKQVYVTNMASSTLSVIDTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred cccccccccccceeeeccccc-ceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceE
Confidence 986655 55678899999987 55566655 4456789999999999988998999999999999998887764 4577
Q ss_pred EEEecCCCEEEEEECC-CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEE
Q 008393 418 MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~d-g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~ 492 (567)
+.+++++..++++..+ +.+.+|+....+....+..+ ..+..++|++++..++.+..+ .|++||+.++ +.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~ 238 (301)
T d1l0qa2 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA 238 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred EEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCC---eEEE
Confidence 8899999998888875 67888888888777776644 556789999999987765432 6999999876 5566
Q ss_pred EeecCCCceEEEEEeCCCCeEEE-EEcCCeEEEEECCCCcEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~I~iwd~~~~~~~ 533 (567)
.+.. ...+..++|+|||++|++ ++.++.|++||+.+++.+
T Consensus 239 ~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 239 RIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 5554 456789999999998864 556889999999999877
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=1.8e-23 Score=208.38 Aligned_cols=269 Identities=12% Similarity=0.013 Sum_probs=207.3
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEEe
Q 008393 292 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTF 368 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~ 368 (567)
.-.||| ||+++|+++ +|.|++||++++..+.. .|...|.+++|+|||++|++++.+. .|++||+++ + ....+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-~-~~~~~ 81 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-G-KAEKF 81 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-C-CEEEC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-C-cEEEe
Confidence 467999 999999986 67999999988877654 6899999999999999998876553 799999986 3 34667
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC----------CCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA----------ENV 435 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~----------dg~ 435 (567)
..|...|.+++|+|+++.++ +++.++.+++|++.+++....+.. ....++|+|++..++++.. ++.
T Consensus 82 ~~~~~~v~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAV-VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred eCCCceEEeeeecccccccc-eeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 88999999999999987555 888999999999999998877764 4577999999999887653 346
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC----CCceEEEeecCCCceEEEEEeCCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
+++||+.+++... +..+...+..++|+|+|++|++++.+ .+++|+..... .......+..+...+..+.|++++
T Consensus 161 ~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 161 IHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred eeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence 8999999987664 44467788899999999999999998 99999986542 122334444455555555677777
Q ss_pred CeEEEEEcCC-----eEEEEECCCCcEEEeccccCCeeEEEEecCC---CEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg---~~l~s~s~Dg~I~iWd 567 (567)
..+..+..+. .+..+++..+....+..+.+.+..+.+...+ .++++++.|+.|++||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 304 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence 7666554332 3555666666666666666666666665544 3678888899999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=1.5e-21 Score=192.18 Aligned_cols=260 Identities=11% Similarity=0.085 Sum_probs=199.9
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecc--cCccEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCC---
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSA--- 373 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~--h~~~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~--- 373 (567)
+||++++.|++|.|||+.+++.+.++.. +...+.+++|+|||++|+ +++.++.|.+||+.+ ++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecCCCccc
Confidence 4899999999999999999999998875 345678999999999874 567899999999998 666666654433
Q ss_pred --cEEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEE
Q 008393 374 --SVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 374 --~V~~l~~~p~~~~li~s~~-----------~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
.+..++|+|+++.+++.+. .+..+.+||..+++....+.. ....+.|++++..+++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence 3457899999988775543 467899999999998888764 456789999999998875 45778
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCE------------------------EEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGEL------------------------LASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~------------------------l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
||..+++....+..+.... ...+.+++.. +.....+ .+.+|++.++. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred eeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence 9999999888776543211 1122222211 1111122 58888887663 23344
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|+|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 55667778888999999987765 4799999999999887667788899999999999999999999999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=1.4e-22 Score=200.41 Aligned_cols=267 Identities=9% Similarity=0.030 Sum_probs=198.5
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEecc
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
++|++++++|++++.++.|.|||+++++.+.++. .|...+.+++|+|||++|+ ++..++.|++||+.+ ++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-Ceeeeeecc
Confidence 5789999999999999999999999999999887 4566789999999999875 455789999999998 555554442
Q ss_pred CC------CcEEEEEEcCCCCeEEEEE-----------eCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEE
Q 008393 371 HS------ASVMSLDFHPNKDDLICSC-----------DGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYL 428 (567)
Q Consensus 371 h~------~~V~~l~~~p~~~~li~s~-----------~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ 428 (567)
.. ..+..++|+|+|+.++++. ..++.+.+|+..+++....+. .....+.+.++ +.++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLY 159 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC-CEEE
Confidence 22 2355789999998877553 247889999998876543322 23344455555 4444
Q ss_pred EEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEE--------------------------EEEeCC-eEEEEe
Q 008393 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL--------------------------ASVSED-SVRVWT 481 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l--------------------------~s~s~d-~I~iwd 481 (567)
+. ++.+.+||..+++.+..+..+.. ...+.++|++..+ +++..+ .+.+||
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred Ee--CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 43 35689999999998888765432 3334444544322 222333 577888
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
+.++. ........+...+..+.+++++.+++.... +.|++||+.+++.+....+...+.+++|+|||++|++++.|+
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 86653 233445567778889999999988776654 589999999999886666667899999999999999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.|+|||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=2.3e-21 Score=199.25 Aligned_cols=263 Identities=11% Similarity=0.014 Sum_probs=192.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce-e---EEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-L---RTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~-~---~~~~~h~~~V~ 376 (567)
+++++..||.|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+.... . ....+|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 55778889999999999999999999875 5999999999999999999999999999874422 1 22235666777
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------------eeEEEEecCCCEEEEEEC-CCeEEEEEC
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------------TAQMRFQPHLGRYLAAAA-ENVVSILDA 441 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~-dg~I~i~d~ 441 (567)
+++|+|||+++++++..++.+++||..++.++..+..+ ...+.+++++..++.... .+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 88889999998888889999999999999888776542 233455666666555554 356666666
Q ss_pred CCCeE-EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeCCCC-eEEE
Q 008393 442 ETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYP-SLLV 515 (567)
Q Consensus 442 ~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~-~l~~ 515 (567)
..... ......+...+..+.|+|++++++++..+ .+.+|+..++ ..+...... ........+...+. .++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence 55432 22334577788999999999999888866 7999999876 444433322 12222233333322 2222
Q ss_pred --EEcCCeEEEEECCCC-------cEE-EeccccCCeeEEEEecCCCEEEE-------EECCCcEEEcC
Q 008393 516 --IGCYQSLELWNMSEN-------KTM-TLTAHEGLIAALAVSTETGYVAS-------ASHDKFVKLWK 567 (567)
Q Consensus 516 --~~~dg~I~iwd~~~~-------~~~-~~~~h~~~V~~l~~spdg~~l~s-------~s~Dg~I~iWd 567 (567)
...++.+.+|+.... +.. .+.+|...+..++|+||+++|++ ++.|++|+|||
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 234678888887543 233 68899999999999999999994 55688999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.5e-20 Score=193.45 Aligned_cols=184 Identities=11% Similarity=-0.029 Sum_probs=149.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce-e---EEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-L---RTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~-~---~~~~~h~~~V~ 376 (567)
++++.+.+|+|.|||..+++++..+..+. .+..++|+|||++|++++.|++|++||+.+.... . ....+|.+.+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 45788899999999999999999998774 6999999999999999999999999999874422 2 22235666677
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC--------------eeEEEEecCCCEEEEEEC-CCeEEEEEC
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------------TAQMRFQPHLGRYLAAAA-ENVVSILDA 441 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~-dg~I~i~d~ 441 (567)
+..|+|||+++++++..++.|++||..+++.+..+... ...+.+++++..++++.. ++.|.+||.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 77888999999889999999999999999988876532 235678999888766655 689999999
Q ss_pred CCCeEEEEec-CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC
Q 008393 442 ETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 442 ~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~ 485 (567)
.+.+...... .+...+..++|+|+|+++++++.+ .|.++|..++
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 8876543332 355678899999999998888866 8999998765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.85 E-value=9.5e-19 Score=175.35 Aligned_cols=280 Identities=10% Similarity=0.033 Sum_probs=202.4
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEe-----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe---------
Q 008393 283 VRASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--------- 348 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s--------- 348 (567)
...+.+++.+++++|||+.+++.. .++.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence 346788999999999999987642 3467999999999999998876644 799999999998875
Q ss_pred -CCCcEEEEEcCCCCceeEEeccCCCcE-------EEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEeCCeeEEE
Q 008393 349 -FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMR 419 (567)
Q Consensus 349 -~dg~I~iwd~~~~~~~~~~~~~h~~~V-------~~l~~~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 419 (567)
.++.|.+||..+ ++.+..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+....... ...+.
T Consensus 94 ~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 171 (373)
T d2madh_ 94 KRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYH 171 (373)
T ss_pred ccceEEEEEECCC-CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc-ceeEE
Confidence 357899999998 66666665554433 4477888887765443 4467889999888776655543 45678
Q ss_pred EecCCCEE-EEEECCCeEEEEECCCCeEEEEecCCC------CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 420 FQPHLGRY-LAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 420 ~~~~~~~l-~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
+++++..+ ++...++.+.+||...++.......+. .....+.+++++.+++....+.+++|+...... ..+.
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 250 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA 250 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EEEE
Confidence 88988766 456679999999999987776554322 223455667777666554444899999876421 1111
Q ss_pred Eeec----------CCCceEEEEEeCCCCeEE----------EEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCC
Q 008393 493 ELSC----------NGNKFHSCVFHPTYPSLL----------VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 493 ~~~~----------~~~~i~~~~~sp~~~~l~----------~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~ 552 (567)
.... .......+++++++..++ ....++.|.+||..+++.+....+...+.+++|+|||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~ 330 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCC
Confidence 1111 112234456666666554 34456689999999999887777888899999999998
Q ss_pred E--EEEEECCCcEEEcC
Q 008393 553 Y--VASASHDKFVKLWK 567 (567)
Q Consensus 553 ~--l~s~s~Dg~I~iWd 567 (567)
. +++++.|+.|+|||
T Consensus 331 ~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 331 PDLYALSAGTEVLHIYD 347 (373)
T ss_pred EEEEEEeCCCCeEEEEE
Confidence 4 56888999999997
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.7e-19 Score=177.32 Aligned_cols=259 Identities=12% Similarity=0.093 Sum_probs=193.7
Q ss_pred CCCCccceeccCCccceeeeeecc--CCCCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccCc-----cEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSS-----LIT 333 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~~-----~V~ 333 (567)
.|..+++||..++ +.+..+.. +...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+..+.. .+.
T Consensus 9 ~d~~v~v~D~~s~---~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~ 85 (337)
T d1pbyb_ 9 RPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CCCEEEEEECCCC---eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee
Confidence 4567889998876 55555553 445678999999999874 567899999999999999988876543 345
Q ss_pred EEEECCCCCeEEEEe------------CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 334 DVRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
.++|+|++++++++. .+..+.+||..+ ......+. +...+..++|++++..++ +++ +.+.+||
T Consensus 86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d 160 (337)
T d1pbyb_ 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMD 160 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEE
T ss_pred eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC-CeEEEecc-ccCCceEEEEcCCCCEEE-EEc--CCcceee
Confidence 789999999998876 467789999987 56666665 456688999999998776 443 4588999
Q ss_pred CCCCeeeEEEeCCe--eEEEEecCC----------C--------------EEEEEECCCeEEEEECCCCeEEE-EecCCC
Q 008393 402 INNGSCTRVFKGGT--AQMRFQPHL----------G--------------RYLAAAAENVVSILDAETQACRL-SLQGHT 454 (567)
Q Consensus 402 ~~~~~~~~~~~~~~--~~~~~~~~~----------~--------------~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~ 454 (567)
..+++....+.... ....+.+++ . .......++.+.+||..++.... .+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred eecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC
Confidence 99998887764321 111111111 1 11111223568999999887554 345577
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 455 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..+..+.+++++.+++.+. +.|++||+.++ +.+..+. +...+.+++|+|||++|++++.++.|++||..+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRAFGAY-NVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE-SEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred cceEEEEecccceEEEEcc-ccEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 7888999999999887653 58999999876 5566554 4566789999999999999999999999999998877
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.9e-18 Score=169.72 Aligned_cols=267 Identities=12% Similarity=0.172 Sum_probs=189.6
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeee--cccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeE--EeccCCCcE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLR--TFMGHSASV 375 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l--~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~--~~~~h~~~V 375 (567)
.+++++.|++|+||++++...+..+ ..|.+.+..|+|+|||++|++++ .|+.|++|+++....... ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 4567779999999998765433333 36778899999999999996665 489999999986443222 223345667
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEE-
Q 008393 376 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 448 (567)
Q Consensus 376 ~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~- 448 (567)
..++|+|+|+++++++..++.|.+|+........... .....+.+++++..++++.. +..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 8899999999888776678899999988776554432 24567889999998888876 5689999987642221
Q ss_pred -----EecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCC-CceEEEee------cCCCceEEEEEeCCCCeEE
Q 008393 449 -----SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE-GECVHELS------CNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 449 -----~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~-~~~i~~~~------~~~~~i~~~~~sp~~~~l~ 514 (567)
...........++|++++.+++..... ...+|++..... ......+. ........+++++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 122244567889999999988877655 788888754322 11222221 1234466788999999887
Q ss_pred EEEc-CCeEEEEECCCCcEE----EeccccCCeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 515 VIGC-YQSLELWNMSENKTM----TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 515 ~~~~-dg~I~iwd~~~~~~~----~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
+... ++.+.+|++...... ....+...+.+++|+|||++|++++. ++.|+||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 7765 568999988754322 23344567889999999999877764 68899983
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2e-18 Score=169.53 Aligned_cols=271 Identities=11% Similarity=0.116 Sum_probs=192.7
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe-CCCcEEEEeCCCCeeeeeec---ccCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE---EHSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~I~vwd~~~~~~~~~l~---~h~~~V~~i~f 337 (567)
.+..+++|++.....++.+..+ .|.+.|.+++|+|||++|++++ .|+.|++|++.......++. .+...+..++|
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~ 90 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 90 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred CCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence 4567889998765444444444 4778999999999999996655 58999999997654433332 34455778999
Q ss_pred CCCCCeEEEEeC-CCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---
Q 008393 338 SPSMPRLATSSF-DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--- 412 (567)
Q Consensus 338 sp~~~~l~s~s~-dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--- 412 (567)
+|||++|++++. ++.|.+|+...... .......+...+.++.|+|++..+++....+..|.+|+...........
T Consensus 91 spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (333)
T d1ri6a_ 91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 170 (333)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence 999999999885 67899998876322 2233445677788999999999888777778889999987754332211
Q ss_pred ------CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCC----eEEEEec------CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 413 ------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ----ACRLSLQ------GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 413 ------~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~----~~~~~~~------~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.....+.|++++..++.... .+...+++.... .....+. ........+++++++++++.....
T Consensus 171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~ 250 (333)
T d1ri6a_ 171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 250 (333)
T ss_dssp EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc
Confidence 13467889999888877765 567777776432 2222221 123456778999999988777654
Q ss_pred --eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEE--ECCCCcEE
Q 008393 476 --SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELW--NMSENKTM 533 (567)
Q Consensus 476 --~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iw--d~~~~~~~ 533 (567)
.+.+|++........+.........+..++|+|||++|++++.+ +.|.+| |..+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 251 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 89999987665544555555556667889999999998888754 789998 55666543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=2.3e-17 Score=165.13 Aligned_cols=259 Identities=11% Similarity=0.030 Sum_probs=183.5
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeecccCccE-------EEEEECCCCC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI-------TDVRFSPSMP 342 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h~~~V-------~~i~fsp~~~ 342 (567)
+..+..+..+ .++|+|||++|++++ .++.|.+||..+++.+..+..+.... ..+.|+++++
T Consensus 60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 3344444433 689999999999875 35789999999999998887766544 4478888888
Q ss_pred eEEEEe--CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC------
Q 008393 343 RLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------ 414 (567)
Q Consensus 343 ~l~s~s--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~------ 414 (567)
.++... .++.+.+|+... .... .+...+.++.|+++++.++++.+.|+.+.+|+...++........
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (373)
T d2madh_ 138 DLLFFQFAAGPAVGLVVQGG-SSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred cEEEEEEcCCCceEEeeccC-CeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence 766554 356788898876 3322 234456789999999999889999999999999998877665421
Q ss_pred ---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE--EecCCC----------CCeeEEEEcCCCCEEE---------
Q 008393 415 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHT----------KPIDSVCWDPSGELLA--------- 470 (567)
Q Consensus 415 ---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~----------~~V~~l~~sp~g~~l~--------- 470 (567)
.....+.+ ++.++..+.++.+.+|+..+..... .+..+. .....+++++++..++
T Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 291 (373)
T d2madh_ 213 NLLTQPAQANK-SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeeeEEECC-CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence 11223333 3556677778899999988765432 222221 2233456666666544
Q ss_pred -EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE--EEEEcCCeEEEEECCCCcEE-EeccccCCeeEE
Q 008393 471 -SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL--LVIGCYQSLELWNMSENKTM-TLTAHEGLIAAL 545 (567)
Q Consensus 471 -s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l--~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l 545 (567)
....+ .|.+||+.++ +.+..+. +...+..++|+|||+.+ ++++.++.|++||+.+++.+ .+..+......|
T Consensus 292 ~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred EeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence 33344 7899999877 4555444 45678899999999853 46778899999999999988 666788888888
Q ss_pred EEecC
Q 008393 546 AVSTE 550 (567)
Q Consensus 546 ~~spd 550 (567)
++.++
T Consensus 368 ~~~~~ 372 (373)
T d2madh_ 368 SVMNE 372 (373)
T ss_pred EEecC
Confidence 87654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.7e-18 Score=172.03 Aligned_cols=274 Identities=8% Similarity=0.051 Sum_probs=188.9
Q ss_pred eEEEEEcCCCCeEEEEe-----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEE
Q 008393 290 VICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVR 354 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~ 354 (567)
+.-.+.+|||+.+++.. .++.|.+||..+++.+.++..+... .++|+|||++|++++ .|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 33446689999987753 4567999999999999998766544 799999999887653 478999
Q ss_pred EEEcCCCCceeEEeccCC-------CcEEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCE
Q 008393 355 VWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 426 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~-------~~V~~l~~~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (567)
+||+.+ +..+..+..+. .....++|++++..+++.. +.+..+.+|+..+++.+..+..+.....+......
T Consensus 82 v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 82 VFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEECCC-CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 999998 55555544322 2235688999998776543 45678999999999988887755443333333344
Q ss_pred EEEEECCCeEEEEECCCCeEEEEe------cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC--
Q 008393 427 YLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-- 497 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~------~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-- 497 (567)
.++.+.|+...++..........+ ..+...+....+.+++..++.++.+ .+++|++..+.. ..+.....+
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~ 239 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTE 239 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCH
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCccc
Confidence 444555554444443332111111 1233445667788888888888888 999999986532 222222111
Q ss_pred --------CCceEEEEEeCCCCeEEEEEcC----------CeEEEEECCCCcEEEeccccCCeeEEEEecCCC--EEEEE
Q 008393 498 --------GNKFHSCVFHPTYPSLLVIGCY----------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVASA 557 (567)
Q Consensus 498 --------~~~i~~~~~sp~~~~l~~~~~d----------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~ 557 (567)
......+++++++..+++...+ ..|.+||..+++.+....+...+.+++|+|||+ +++++
T Consensus 240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319 (355)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE
Confidence 1122347899999988877654 369999999998885445566789999999997 45667
Q ss_pred ECCCcEEEcC
Q 008393 558 SHDKFVKLWK 567 (567)
Q Consensus 558 s~Dg~I~iWd 567 (567)
+.|+.|+|||
T Consensus 320 ~~d~~i~v~D 329 (355)
T d2bbkh_ 320 TGDKTLYIHD 329 (355)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 7899999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=1.6e-18 Score=170.74 Aligned_cols=260 Identities=11% Similarity=0.051 Sum_probs=188.7
Q ss_pred CCCCccceeccCCccceeeeeec-cCCCCeEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCeeeeeecccC------ccEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHS------SLIT 333 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~la-sg~~dg~I~vwd~~~~~~~~~l~~h~------~~V~ 333 (567)
.+..+.+||+.++ +.+.+++ .|...+.+++|+|||++++ ++..++.|++||+.+++.+..+.... ..+.
T Consensus 16 ~~~~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~ 92 (346)
T d1jmxb_ 16 YPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92 (346)
T ss_dssp TTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred CCCEEEEEECCCC---CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE
Confidence 3456789999877 5667666 4566788999999999875 45578999999999999988775322 3456
Q ss_pred EEEECCCCCeEEEEe------------CCCcEEEEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEE
Q 008393 334 DVRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRY 399 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~i 399 (567)
.++|+|||++|++++ .++.+.+|+..+ +.....+. .....+..+.+.+++. ++++ ++.+.+
T Consensus 93 ~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~ 167 (346)
T d1jmxb_ 93 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDGS-LYVA---GPDIYK 167 (346)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTSC-EEEE---SSSEEE
T ss_pred EEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc-ceeeeEEEeeeccCceEEEEecCCCE-EEEe---CCcceE
Confidence 789999999988775 467789999876 33222221 1234455566666654 4433 356999
Q ss_pred EECCCCeeeEEEeCC--eeEEEEecCCC--------------------------EEEEEECCCeEEEEECCCCeEEE-Ee
Q 008393 400 WSINNGSCTRVFKGG--TAQMRFQPHLG--------------------------RYLAAAAENVVSILDAETQACRL-SL 450 (567)
Q Consensus 400 wd~~~~~~~~~~~~~--~~~~~~~~~~~--------------------------~l~~~~~dg~I~i~d~~~~~~~~-~~ 450 (567)
|++.+++.+..+..+ ...+.++|++. .+..+..+..+.+||..++.... .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (346)
T d1jmxb_ 168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 247 (346)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred EEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe
Confidence 999999888776532 11222233222 12222335578889998886554 44
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
..|...+..+.+++++.+++....+.|++||+.++ +.+..+. ....+.+++|+|||++|++++.++.|++||+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323 (346)
T ss_dssp EECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC---cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence 56788899999999999888888889999999876 5565554 3456889999999999999999999999999999
Q ss_pred cEE
Q 008393 531 KTM 533 (567)
Q Consensus 531 ~~~ 533 (567)
+.+
T Consensus 324 ~~i 326 (346)
T d1jmxb_ 324 EKV 326 (346)
T ss_dssp EEE
T ss_pred CEE
Confidence 887
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.6e-16 Score=157.48 Aligned_cols=274 Identities=10% Similarity=0.047 Sum_probs=182.1
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeecccCc----
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS---- 330 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h~~---- 330 (567)
.+.+||..++ +.+..+..+..+ .++|||||++|++++ .|+.|++||+.+++.+..+..+..
T Consensus 29 ~v~v~D~~tg---~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~ 103 (355)
T d2bbkh_ 29 QQFVIDGEAG---RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 103 (355)
T ss_dssp EEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred eEEEEECCCC---cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceee
Confidence 4556777666 455556655444 799999999887653 478999999999998887764332
Q ss_pred ---cEEEEEECCCCCeEEEEe--CCCcEEEEEcCCCCceeEEeccCCCc-------EEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 331 ---LITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSAS-------VMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 331 ---~V~~i~fsp~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~h~~~-------V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
....++|++++++++++. .+..+.+|+..+ +..+..+..+... ...+.+++++..+++....++.+.
T Consensus 104 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~ 182 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182 (355)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred cCCCCceEEEecCCCeeEEecCCCCceeeeeecCC-CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence 234679999999888775 457899999987 6666655543321 223444555544444444444444
Q ss_pred EEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE--EecCCC----------CCeeEEEEcCCC
Q 008393 399 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHT----------KPIDSVCWDPSG 466 (567)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~----------~~V~~l~~sp~g 466 (567)
+++......... .......+.+.+..++.++.++.+++|++..++... ....+. .....+++++++
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~ 260 (355)
T d2bbkh_ 183 ITHTEVFHPEDE--FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260 (355)
T ss_dssp EEECCCCSCTTS--CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEecccccceec--ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence 444433221111 122345677888899999999999999998875432 222121 233458899999
Q ss_pred CEEEEEeC----------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe-E-EEEEcCCeEEEEECCCCcEE
Q 008393 467 ELLASVSE----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-L-LVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 467 ~~l~s~s~----------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~-l-~~~~~dg~I~iwd~~~~~~~ 533 (567)
..++.... . .|.+||..++ +.+..+.. ...+.+++|+|||+. + ++++.++.|++||+.+++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CeEEEEeccCCceeecCCCCeEEEEeCCCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 98776542 1 5999999877 44555443 345788999999984 3 44556899999999999987
Q ss_pred -EeccccCCeeEEEEecC
Q 008393 534 -TLTAHEGLIAALAVSTE 550 (567)
Q Consensus 534 -~~~~h~~~V~~l~~spd 550 (567)
.+..+......+.+..+
T Consensus 337 ~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 337 RSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEECCCCSSCCEEECCCC
T ss_pred EEEeCcCCCccEEEeCCC
Confidence 56666666666665543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=2.9e-16 Score=157.18 Aligned_cols=277 Identities=9% Similarity=-0.026 Sum_probs=187.0
Q ss_pred CCCCeEEEEEcCCCCeEEE---EeCCC--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CC
Q 008393 286 STSKVICCHFSSDGKLLAT---GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FD 350 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~las---g~~dg--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~d 350 (567)
+.++...++..++++.... ...++ .|.+||..+++.+.++..+... .++|+|||++|++++ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 4455556677888875322 23344 5777799999999988877655 589999999988765 36
Q ss_pred CcEEEEEcCCCCceeEEeccCC-------CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecC
Q 008393 351 KTVRVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 423 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~-------~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (567)
+.|.+||..+ .+.+..+..+. .....++|+|||++++++...++.|.+||+.+++.+..+..+.....+...
T Consensus 96 ~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T d1mdah_ 96 DYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA 174 (368)
T ss_dssp EEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred CeEEEEECCC-CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCC
Confidence 7899999998 55555554332 123468999999998877677899999999999998887654433333333
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEe------cCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecC
Q 008393 424 LGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~~~~~~~~~------~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
...+++.+.|+.+.++++......... ..+...+..+.+.+++..+...+. .++++++..+.. ..+......
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~ 252 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-SILQGDIPAAGA-TMKAAIDGN 252 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-CCEEEECCSSCC-EEECCCCSS
T ss_pred CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCC-CEEEEeecCCce-EEEeecccc
Confidence 456666677888888887655332221 223445566778888766554432 455555544321 111111110
Q ss_pred ----------CCceEEEEEeCCCCeEEEEEcCC---------eEEEEECCCCcEEEeccccCCeeEEEEecCCCE--EEE
Q 008393 498 ----------GNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGY--VAS 556 (567)
Q Consensus 498 ----------~~~i~~~~~sp~~~~l~~~~~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~--l~s 556 (567)
......+++++++..+++...++ .|++||..+++.+....+...+.+++|+|||+. +++
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEE
Confidence 11123468999998887764332 599999999998865556678999999999973 456
Q ss_pred EECCCcEEEcC
Q 008393 557 ASHDKFVKLWK 567 (567)
Q Consensus 557 ~s~Dg~I~iWd 567 (567)
+..|+.|+|||
T Consensus 333 ~~~~~~v~v~D 343 (368)
T d1mdah_ 333 SAGTEVLDIYD 343 (368)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCeEEEEE
Confidence 67789999997
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=8.4e-14 Score=138.96 Aligned_cols=264 Identities=9% Similarity=-0.016 Sum_probs=169.8
Q ss_pred ceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCeeeeeecccCc-------
Q 008393 268 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS------- 330 (567)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~I~vwd~~~~~~~~~l~~h~~------- 330 (567)
+||...+ +.+..+.++... .++|+|||++|++.+ .|+.|.+||..+++.+..+..+..
T Consensus 50 ~~d~~~~---~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~ 124 (368)
T d1mdah_ 50 VSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred EEeCCCC---cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence 4454444 455566666655 589999999998764 367899999999999888764432
Q ss_pred cEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 331 LITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
....++|+|||++|+++. .++.|.+||+.+ .+.+..+..+.... +.+.+...++..+.||.+.+|++.......
T Consensus 125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~ 199 (368)
T d1mdah_ 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCC-CcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceee
Confidence 234689999999998886 479999999998 66666665444322 223344556677788998888887655433
Q ss_pred EEe---------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCC----------CCeeEEEEcCCCCE
Q 008393 410 VFK---------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHT----------KPIDSVCWDPSGEL 468 (567)
Q Consensus 410 ~~~---------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~----------~~V~~l~~sp~g~~ 468 (567)
... .......+.+++. +.....+.+++++........... .+. .....+++++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 277 (368)
T d1mdah_ 200 GIVGAQCTGAQNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTE--EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eeeecccccccccceeecccccCcE--EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence 221 1122334444432 223345566666666554332211 111 12345788999887
Q ss_pred EEEEeC---------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe-EE-EEEcCCeEEEEECCCCcEEEec
Q 008393 469 LASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LL-VIGCYQSLELWNMSENKTMTLT 536 (567)
Q Consensus 469 l~s~s~---------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~-l~-~~~~dg~I~iwd~~~~~~~~~~ 536 (567)
++.... . .|.+||..++ +.+..+.. ...+..++|+|||+. |+ ++..++.|++||..+++.+...
T Consensus 278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 278 IMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred EEEEecCCCceeecCCceEEEEECCCC---cEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 766532 1 4899999887 44554443 356788999999974 44 4456789999999999988443
Q ss_pred cccCCeeEEEE
Q 008393 537 AHEGLIAALAV 547 (567)
Q Consensus 537 ~h~~~V~~l~~ 547 (567)
.-....+.|++
T Consensus 354 ~~g~~P~~l~~ 364 (368)
T d1mdah_ 354 ELDKGPESLSV 364 (368)
T ss_dssp CCCSCCCEEEC
T ss_pred ECCCCCCEEEE
Confidence 33333555554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.57 E-value=5.5e-14 Score=140.98 Aligned_cols=255 Identities=10% Similarity=0.036 Sum_probs=179.3
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeecc------------------------------cCccEEEEEECCCCCeEEEEe-CC
Q 008393 302 LATGGHDKKAVLWHTDTLKSKTNLEE------------------------------HSSLITDVRFSPSMPRLATSS-FD 350 (567)
Q Consensus 302 lasg~~dg~I~vwd~~~~~~~~~l~~------------------------------h~~~V~~i~fsp~~~~l~s~s-~d 350 (567)
+++|+.+|.|.||++.+++.+.++.. |...+....+.|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56788999999999999988877532 223345555678999987765 57
Q ss_pred CcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcE------------------EEEECCCCeeeEEE
Q 008393 351 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEI------------------RYWSINNGSCTRVF 411 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I------------------~iwd~~~~~~~~~~ 411 (567)
..|.++|+++ .+....+. .+...+..++|+|+++..++.+..+..+ ..+|..+.+....+
T Consensus 94 ~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 8899999998 55555443 4577899999999988765555444333 55888887776655
Q ss_pred e--CCeeEEEEecCCCEEEEEECC-----------------------------------------CeEEEEECCCCeEEE
Q 008393 412 K--GGTAQMRFQPHLGRYLAAAAE-----------------------------------------NVVSILDAETQACRL 448 (567)
Q Consensus 412 ~--~~~~~~~~~~~~~~l~~~~~d-----------------------------------------g~I~i~d~~~~~~~~ 448 (567)
. +....+.++|+++++++++.+ +.+.+++....+.+.
T Consensus 173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 4 456778999999998887753 233444444455555
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCC--------CCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 449 SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 449 ~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~--------~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.+..... ...+.++|||+++++++. + +|.|||+.+.. ...++.-.....-......|.++|..+.+...
T Consensus 253 ~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ 331 (441)
T d1qnia2 253 YIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI 331 (441)
T ss_dssp EECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred EEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence 6655444 467999999998877654 4 99999986521 11222222222334556789999987777888
Q ss_pred CCeEEEEECCC----------CcEE-Ee-----ccccCCeeEEEEecCCCEEEEEE
Q 008393 519 YQSLELWNMSE----------NKTM-TL-----TAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 519 dg~I~iwd~~~----------~~~~-~~-----~~h~~~V~~l~~spdg~~l~s~s 558 (567)
|..|..|++.. ...+ .+ .+|...+.+.+++|||+||++++
T Consensus 332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 99999999741 1122 22 47877888888999999999994
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=3.1e-13 Score=139.50 Aligned_cols=284 Identities=14% Similarity=0.040 Sum_probs=167.4
Q ss_pred CccceeccCCccceee--eeeccCCCCeEEEEEcCCCCeEEEEeC---------CCcEEEEeCCCCeeeeeecccCccEE
Q 008393 265 GGRGMDVSQGFSFKEA--NSVRASTSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSLIT 333 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~l~~h~~~V~~l~~s~dg~~lasg~~---------dg~I~vwd~~~~~~~~~l~~h~~~V~ 333 (567)
.+.+|+..++.....+ ..+..|...|.++.|||||++|+.++. ++.+.|||+.+++. ..+..|...+.
T Consensus 37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~ 115 (470)
T d2bgra1 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQ 115 (470)
T ss_dssp CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEE
T ss_pred cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcccc
Confidence 4567787777543222 356777889999999999999998753 56789999998874 56888999999
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-c-----------------CCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 334 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-G-----------------HSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~-----------------h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
.+.|+|||++||... ++.+++|+..++. ..+... + ..+....+.|+|||+.+++....+.
T Consensus 116 ~~~~SPDG~~ia~~~-~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~ 193 (470)
T d2bgra1 116 WVTWSPVGHKLAYVW-NNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT 193 (470)
T ss_dssp EEEECSSTTCEEEEE-TTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred ccccccCcceeeEee-cccceEEECCCCc-eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence 999999999999965 6679999998743 332221 1 1233456889999998876655444
Q ss_pred cEEEEECC-----------------------------------CCeeeEEEe--------------CCeeEEEEecCCCE
Q 008393 396 EIRYWSIN-----------------------------------NGSCTRVFK--------------GGTAQMRFQPHLGR 426 (567)
Q Consensus 396 ~I~iwd~~-----------------------------------~~~~~~~~~--------------~~~~~~~~~~~~~~ 426 (567)
.|..|.+. .+....... .....+.|.+++..
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 273 (470)
T d2bgra1 194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI 273 (470)
T ss_dssp TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE
T ss_pred cCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce
Confidence 45444331 111100000 01134556666654
Q ss_pred EEEEEC-CC-----eEEEEECCCCeEEEEecC------CCCCe-----eEEEEcCCCC--EEEEEeCC---eEEEEeCCC
Q 008393 427 YLAAAA-EN-----VVSILDAETQACRLSLQG------HTKPI-----DSVCWDPSGE--LLASVSED---SVRVWTVGS 484 (567)
Q Consensus 427 l~~~~~-dg-----~I~i~d~~~~~~~~~~~~------h~~~V-----~~l~~sp~g~--~l~s~s~d---~I~iwd~~~ 484 (567)
++.... .+ .+..+|..++........ ....+ ....|.+++. +++....+ .|++|+...
T Consensus 274 ~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g 353 (470)
T d2bgra1 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (470)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred eEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccC
Confidence 444322 11 344456666654432210 01111 1223444433 44445455 356666543
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCC------eEEEEECCCCcEEE-----eccccCCeeEEEEecCCC
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ------SLELWNMSENKTMT-----LTAHEGLIAALAVSTETG 552 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg------~I~iwd~~~~~~~~-----~~~h~~~V~~l~~spdg~ 552 (567)
+ ....+......+..+ ++++++.++..+ .++ .|+-.++..+.... +..|...+.+++|||||+
T Consensus 354 ~----~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgk 428 (470)
T d2bgra1 354 K----DCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (470)
T ss_dssp S----CCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred C----ceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCC
Confidence 3 223333344556655 445555554433 222 25555666544332 346788899999999999
Q ss_pred EEEE
Q 008393 553 YVAS 556 (567)
Q Consensus 553 ~l~s 556 (567)
+++.
T Consensus 429 y~~~ 432 (470)
T d2bgra1 429 YYQL 432 (470)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9773
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.39 E-value=2.5e-11 Score=121.40 Aligned_cols=305 Identities=11% Similarity=0.047 Sum_probs=191.1
Q ss_pred cCeEEEecCCCccccCCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeeeeec
Q 008393 205 KPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR 284 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~ 284 (567)
..++.|...|. ++.+.+||+.++.....+..+..++.. .-+..+...+++.... ......
T Consensus 9 De~y~f~Sgg~----sG~V~V~dlpS~r~l~~IpVfspd~~~-----------g~g~~~es~~vl~~~~-----~~~~gd 68 (441)
T d1qnia2 9 DEYYGFWSGGH----QGEVRVLGVPSMRELMRIPVFNVDSAT-----------GWGITNESKEILGGDQ-----QYLNGD 68 (441)
T ss_dssp CSEEEEEECBT----TCCEEEEEETTTEEEEEECSSSBCTTT-----------CTTTSHHHHHHHCSSS-----CCSCCC
T ss_pred CCEEEEEeCCC----CCcEEEEeCCCCcEEEEEEeEcCCCCE-----------EEEECCccceEEeccc-----ccccCc
Confidence 34667766665 567899999998777666544332211 0011111111111110 112234
Q ss_pred cCCCCeEEEEEcCCCCeEEEEe-CCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCC--eEEEEeCCC---------
Q 008393 285 ASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMP--RLATSSFDK--------- 351 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~-~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~--~l~s~s~dg--------- 351 (567)
.|...+.+..++|||++|++.. .++.|.++|+++++....+. .+...+..++|+|+++ |++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 5666777778899999996664 67899999999999988776 3567899999999998 444444332
Q ss_pred --------cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC------------------------------
Q 008393 352 --------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG------------------------------ 393 (567)
Q Consensus 352 --------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~------------------------------ 393 (567)
.+..+|..+ ......+.. ...+..+.|+|+|+++++++..
T Consensus 149 ~~~~~~~~~~~~iD~~t-~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAET-MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp CCGGGEEEEEEEEETTT-CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred cccccccceEEeecCcc-ceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 234577776 333333332 3457789999999988866643
Q ss_pred ----------CCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeE-----------EEE
Q 008393 394 ----------DGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQAC-----------RLS 449 (567)
Q Consensus 394 ----------dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~-----------~~~ 449 (567)
++.+.+++....+.+..+.. ....+.++|++.++++++. +++|.+||+++... +.-
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 23444454455555555543 2456899999998877655 89999999865321 111
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC------CCC-CceEEEee-----cCCCceEEEEEeCCCCeEEEE
Q 008393 450 LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS------GSE-GECVHELS-----CNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 450 ~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~------~~~-~~~i~~~~-----~~~~~i~~~~~sp~~~~l~~~ 516 (567)
.....-.....+|+++|..+.+...| .|..|++.. +.. ...+..+. +|...+.+..++|||++|+++
T Consensus 307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~ 386 (441)
T d1qnia2 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386 (441)
T ss_dssp CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence 11111123456899999888888888 999999842 111 12334443 444444455689999999999
Q ss_pred Ec---CC----------eEEEEECCCCc
Q 008393 517 GC---YQ----------SLELWNMSENK 531 (567)
Q Consensus 517 ~~---dg----------~I~iwd~~~~~ 531 (567)
+. |. .-.++|+...+
T Consensus 387 ~k~s~dr~~~~g~~~~~~~q~~~i~~~~ 414 (441)
T d1qnia2 387 SKFSKDRFLPVGPLHPENDQLIDISGEE 414 (441)
T ss_dssp ESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred CccccccCcCCCCCCCccceeEEecCCe
Confidence 54 32 46778887554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=4.1e-10 Score=106.03 Aligned_cols=231 Identities=13% Similarity=0.154 Sum_probs=157.6
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC---cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.|+|.|.+ |.....+..+...+...+|||||++||...... .+.+.+... .....+..+........|+|++..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc--CceeEEeeeecccccceecCCCCe
Confidence 57777765 444555555677789999999999998776543 366666654 334556667888999999999998
Q ss_pred EEEEEeCCCcEEEEEC--CCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCCCCeeE
Q 008393 387 LICSCDGDGEIRYWSI--NNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 387 li~s~~~dg~I~iwd~--~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
+++....++...++.. ........... ......+++.+..++.... ++ .|.++++..+... .+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence 8877766655444433 33333332222 2334557777777666655 33 6777777776443 33345566778
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~ 532 (567)
..|+|+++.++..+.+ .|.+++...+ .. .+...........|+|||++|+..+.. ..|+++++..+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cccccccceeEEEeecCCceeeeEeecccc----cc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 8999999988887654 3555555433 12 222344556678999999999876654 3799999999988
Q ss_pred EEeccccCCeeEEEEec
Q 008393 533 MTLTAHEGLIAALAVST 549 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~sp 549 (567)
..+....+.+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEeCCCCcEEeEEeCC
Confidence 88888888899999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.30 E-value=3.1e-11 Score=124.15 Aligned_cols=260 Identities=13% Similarity=0.063 Sum_probs=161.3
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-----ccCccEEEEEECCCCCeEEEEeC---------CCcEEEEE
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-----EHSSLITDVRFSPSMPRLATSSF---------DKTVRVWD 357 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-----~h~~~V~~i~fsp~~~~l~s~s~---------dg~I~iwd 357 (567)
.+.|.+|++++.. .|+.|.+||+.+++....+. .|...|.++.|+||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 5789999988764 47889999999998776544 45678999999999999998853 56789999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---------------------Cee
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------GTA 416 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---------------------~~~ 416 (567)
+.+ +. +..+..|...+..+.|+|||+.++++ .++.+++|+..+++..+.... ...
T Consensus 99 ~~~-~~-~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCC-Cc-ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 997 43 46678899999999999999987754 478899999998876654321 124
Q ss_pred EEEEecCCCEEEEEECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.+.|+|++..++....|. .+..|++.... ........+..+.+...+. ...+ .+.+|++..+.........
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~ 247 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYS---DESLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSI 247 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECC---STTCSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEE
T ss_pred ccEECCCCCccceeEecCCcCceEEEEeec---cCCCCCCeeeeeccccccc----cCCcceEEEEECCCcceeeecccc
Confidence 477999999988876543 23333221000 0000111122222222221 1233 6888998776433222211
Q ss_pred --------ecCCCceEEEEEeCCCCeEEEEEc-CC-----eEEEEECCCCcEEEec--------------cccCCeeEEE
Q 008393 495 --------SCNGNKFHSCVFHPTYPSLLVIGC-YQ-----SLELWNMSENKTMTLT--------------AHEGLIAALA 546 (567)
Q Consensus 495 --------~~~~~~i~~~~~sp~~~~l~~~~~-dg-----~I~iwd~~~~~~~~~~--------------~h~~~V~~l~ 546 (567)
......+..+.|.+++..++.... .+ .++.+|..++....+. .|... ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 325 (470)
T d2bgra1 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPH 325 (470)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCE
T ss_pred ccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--Cce
Confidence 122344677889998875555432 21 3445566666543221 11112 223
Q ss_pred EecCC--CEEEEEECCCcEEEc
Q 008393 547 VSTET--GYVASASHDKFVKLW 566 (567)
Q Consensus 547 ~spdg--~~l~s~s~Dg~I~iW 566 (567)
|.+++ .+++.+..||...||
T Consensus 326 ~~~~~~~~~~~~s~~dg~~~ly 347 (470)
T d2bgra1 326 FTLDGNSFYKIISNEEGYRHIC 347 (470)
T ss_dssp ECTTSSEEEEEEECTTSCEEEE
T ss_pred eeecCCCcEEEEeccCcCceeE
Confidence 44433 345666677776665
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=7.3e-10 Score=109.76 Aligned_cols=266 Identities=10% Similarity=0.103 Sum_probs=160.9
Q ss_pred eEEEEeC--CCcEEEEe--CCCCeee--eee-cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe-ccCC
Q 008393 301 LLATGGH--DKKAVLWH--TDTLKSK--TNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHS 372 (567)
Q Consensus 301 ~lasg~~--dg~I~vwd--~~~~~~~--~~l-~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~h~ 372 (567)
.|++|+. .+.|.++. .++++.. ... ......+..|+|++++++|+++.. +.+..|.+.......... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3555653 44565544 4444432 221 223445667999999999988765 458888887544333221 1223
Q ss_pred CcEEEEEEcCCCCeEEEEEe--CCCcEEEEECCCC-eee---------------EEE----eCCeeEEEEecCCCEEEEE
Q 008393 373 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNG-SCT---------------RVF----KGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~--~dg~I~iwd~~~~-~~~---------------~~~----~~~~~~~~~~~~~~~l~~~ 430 (567)
.....+.++++++.++++.. ..+.|..+.+... ... ... ..+...+.|+|++.+++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 34556778888775544432 2455555443221 110 000 1245789999999999888
Q ss_pred EC-CCeEEEEECCC-CeEE--EEe--cCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCce--EEEeec----
Q 008393 431 AA-ENVVSILDAET-QACR--LSL--QGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC--VHELSC---- 496 (567)
Q Consensus 431 ~~-dg~I~i~d~~~-~~~~--~~~--~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~--i~~~~~---- 496 (567)
.. ...|.+|+... +... ... .........++|+|+++++++..+. .|.+|++........ +..+..
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence 76 46888887653 2222 222 2234578899999999999887765 899999876533221 121111
Q ss_pred ----------CCCceEEEEEeCCCCeEEEEEcC------CeEEEEECCCCcEE-------EeccccCCeeEEEEec-CCC
Q 008393 497 ----------NGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMSENKTM-------TLTAHEGLIAALAVST-ETG 552 (567)
Q Consensus 497 ----------~~~~i~~~~~sp~~~~l~~~~~d------g~I~iwd~~~~~~~-------~~~~h~~~V~~l~~sp-dg~ 552 (567)
.......+.++|+|++|+++... +.|..|++.....+ ..........+++++| +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC
Confidence 11234578999999999887532 24777877654322 1122345678899998 789
Q ss_pred EEEEEE-CCCcEEEcC
Q 008393 553 YVASAS-HDKFVKLWK 567 (567)
Q Consensus 553 ~l~s~s-~Dg~I~iWd 567 (567)
+|+++. .++.|.+|+
T Consensus 323 ~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEEECSSSCEEEEEE
T ss_pred EEEEEeCCCCeEEEEE
Confidence 887775 578899984
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.22 E-value=2.7e-09 Score=105.55 Aligned_cols=245 Identities=8% Similarity=-0.020 Sum_probs=150.6
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-Ceeeeee-cccCccEEEEEECCCCCeEEE--Ee-CCCcEEEEEcCC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNL-EEHSSLITDVRFSPSMPRLAT--SS-FDKTVRVWDADN 360 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l-~~h~~~V~~i~fsp~~~~l~s--~s-~dg~I~iwd~~~ 360 (567)
+...+.-|+|++++++|+++. .+.+..|.+.. +...... .........+.++++++.++. +. ..+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 344566799999999998876 45677776653 2222221 112233456778888874433 22 245565554432
Q ss_pred CCceeE----------------EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE---EEe-----CCee
Q 008393 361 PGYSLR----------------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFK-----GGTA 416 (567)
Q Consensus 361 ~~~~~~----------------~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~---~~~-----~~~~ 416 (567)
.+.... ........+.++.|+|+|++++++......|.+|++.....+. ... .+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence 111111 1112234578999999999888776667789998865433221 111 2456
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEECCCCe--EEEE---ec--------------CCCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 417 QMRFQPHLGRYLAAAA-ENVVSILDAETQA--CRLS---LQ--------------GHTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~--~~~~---~~--------------~h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
.+.|+|++..+++... ++.|.+|+..... .+.. +. .+......+.++|||++|+++..+
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence 7999999998887776 7899999986653 2211 11 011234578999999999887532
Q ss_pred ------eEEEEeCCCCCCCce---EEEeecCCCceEEEEEeC-CCCeEEEEE-cCCeEEEEECCCCc
Q 008393 476 ------SVRVWTVGSGSEGEC---VHELSCNGNKFHSCVFHP-TYPSLLVIG-CYQSLELWNMSENK 531 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~---i~~~~~~~~~i~~~~~sp-~~~~l~~~~-~dg~I~iwd~~~~~ 531 (567)
.|..|++........ +......+.....++++| +|++|+++. .++.|.+|++....
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 277777754322221 122223344567789998 789888886 45799999876553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.21 E-value=3.6e-09 Score=101.67 Aligned_cols=237 Identities=10% Similarity=0.006 Sum_probs=152.4
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.+..++++|||+++++...+++|..|+.... ...+......+.+++|.++|+++++...++.+.+|+..........+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 5778999999999999999999999886533 33445566779999999999999998888889888876533322222
Q ss_pred --ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE
Q 008393 369 --MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 446 (567)
Q Consensus 369 --~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~ 446 (567)
.........+++.+++. ++++.+.++.|..++...+........... .
T Consensus 107 ~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------------~-- 156 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPML---------------------------A-- 156 (302)
T ss_dssp EECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGG---------------------------S--
T ss_pred cccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCcc---------------------------c--
Confidence 23456688899998864 555777788888888776542221111000 0
Q ss_pred EEEecCCCCCeeEEEEcCCCCEEEEE-eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 447 RLSLQGHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 447 ~~~~~~h~~~V~~l~~sp~g~~l~s~-s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
.............+.++. ..++.+ +.. .|+.+++...........+ ........+++.++|+++++...++.|..
T Consensus 157 ~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~ 233 (302)
T d2p4oa1 157 RSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVR 233 (302)
T ss_dssp CSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred eeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEE
Confidence 000011123445666653 334444 344 8888887654322222222 22334566899999997777777889999
Q ss_pred EECCCCcEEEe--ccccCCeeEEEE---ecCCCEEEEEECC
Q 008393 525 WNMSENKTMTL--TAHEGLIAALAV---STETGYVASASHD 560 (567)
Q Consensus 525 wd~~~~~~~~~--~~h~~~V~~l~~---spdg~~l~s~s~D 560 (567)
|+......... ...-...++++| ++|++.|+.++..
T Consensus 234 i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 234 IAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 98765543322 233356889999 6788877766544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.2e-08 Score=93.74 Aligned_cols=222 Identities=14% Similarity=0.154 Sum_probs=147.1
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCC---cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg---~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~i 355 (567)
...+..+...+..-+|||||+.||....+. .+.+.+...+.. ..+..+...+....|+|+|+.|+.... ++...+
T Consensus 31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 109 (269)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence 344445677788999999999999765443 466667665554 445557778899999999998887654 333333
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEE
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~ 431 (567)
+.......................+.+++..++++...++. |.+.++..+........ ......++|++..++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 189 (269)
T d2hqsa1 110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS 189 (269)
T ss_dssp EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred eecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEe
Confidence 33332233334444455556667788888877777766664 55556666544333222 344567999999988877
Q ss_pred CCC---eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 432 AEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 432 ~dg---~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
.++ .|.++|...+... +..+........|+|||+.|+..+. . .|+++++..+ ....+......+...
T Consensus 190 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~----~~~~lt~~~g~~~~p 263 (269)
T d2hqsa1 190 SNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFP 263 (269)
T ss_dssp ECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEE
T ss_pred ecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC----CEEEEeCCCCcEEeE
Confidence 754 5666676666543 3334566778899999998876653 2 6899999754 234455556677788
Q ss_pred EEeC
Q 008393 505 VFHP 508 (567)
Q Consensus 505 ~~sp 508 (567)
+|+|
T Consensus 264 ~WSP 267 (269)
T d2hqsa1 264 AWSP 267 (269)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=6.6e-09 Score=97.46 Aligned_cols=231 Identities=13% Similarity=0.024 Sum_probs=149.7
Q ss_pred cEEEEEECCCCCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 331 LITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
.-..|++.++|+.+++. +..+.|..++............+ ......+++.+++. ++++....+.|++++..+...+.
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeee
Confidence 35799999999866655 45577777777653332222222 23457889999875 66566666667666655555444
Q ss_pred EEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 410 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
... .....+++.+++..+++-..+..+..++...................|+++++|+++++...+ .|..++....
T Consensus 93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~- 171 (260)
T d1rwia_ 93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN- 171 (260)
T ss_dssp CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC-
T ss_pred eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc-
Confidence 333 245678888887766655556778888776654333222223456789999999988777766 8999997653
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-cccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
...............+++.++|+++++....+.|..++........+. ..-.....|+++++|.++++-..++.|+.
T Consensus 172 --~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 172 --NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp --CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred --eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 122222233455788999999986666666778998887665444332 23356789999999988877666677764
Q ss_pred c
Q 008393 566 W 566 (567)
Q Consensus 566 W 566 (567)
+
T Consensus 250 i 250 (260)
T d1rwia_ 250 L 250 (260)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=2e-08 Score=94.10 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 290 VICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 290 V~~l~~s~dg~~lasg-~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
-.+++++++|+++++. +..+.|..++............-......+++++++.++++....+.|++++-.+ ...+...
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~~~ 94 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVLPF 94 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEECCC
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc-ceeeeee
Confidence 3689999999976665 4557777776654333222222223457789999998777766666666655443 3322222
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-e--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
.......++++.++++ ++++-..+..+..++.......... . .....+++.+++..+++...++.|..+|.....
T Consensus 95 -~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 95 -DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp -CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred -eeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence 2235678999999876 5545555666777776554332211 1 245678899988877776778899999988765
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
........-.....|+++++|+++++.... .|..++..... ..+. ....-.....++++++|..+++-..++.|+.
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~--~~~~-~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--STVL-PFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC--CEEC-CCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe--EEEE-ccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 544333445667899999999988877766 88888765431 1111 1122245678999999876555455567776
Q ss_pred EECC
Q 008393 525 WNMS 528 (567)
Q Consensus 525 wd~~ 528 (567)
++..
T Consensus 250 i~~~ 253 (260)
T d1rwia_ 250 LTSL 253 (260)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 6544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.09 E-value=4e-07 Score=87.68 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=150.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~ 364 (567)
...+..++|+++|+++++-...+.|..|+.++.+....+.........++|.++|+++++...+ ....++.+......
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3445689999999988887788999999988877666666666778999999999877765432 23344444332322
Q ss_pred eEEeccC---CCcEEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-
Q 008393 365 LRTFMGH---SASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA- 432 (567)
Q Consensus 365 ~~~~~~h---~~~V~~l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~- 432 (567)
+..+..+ ...+..+++.++|. ++++... .+.+..++...+....... .....++|+++++.++++..
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~ 197 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 197 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence 2322222 34578899999986 4434322 2346666655444333322 24567999999987766654
Q ss_pred CCeEEEEECCCC----eEE----EEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC------
Q 008393 433 ENVVSILDAETQ----ACR----LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN------ 497 (567)
Q Consensus 433 dg~I~i~d~~~~----~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~------ 497 (567)
.+.|..||+... ... ............|+++.+|++.++...+ .|.+||- .+ +.+.++...
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~~~~ 273 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRDEGH 273 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGGGTC
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCcCCCc
Confidence 789999987532 111 1111112235689999999988877777 9999995 34 455555432
Q ss_pred CCceEEEEEeCCCCeEEEEEcC
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~d 519 (567)
...+++++|.++...+++...+
T Consensus 274 ~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 274 MLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp SCBCCEEEECTTSCEEEEEEEC
T ss_pred CceeeeEEEeCCCCEEEEEcCC
Confidence 3357899999988877776643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.07 E-value=1.5e-07 Score=90.60 Aligned_cols=234 Identities=12% Similarity=0.111 Sum_probs=150.7
Q ss_pred eEEEEEcCCCCeEEEEeC-------CCcEEEEeCCCCeeeeeeccc----CccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 290 VICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~-------dg~I~vwd~~~~~~~~~l~~h----~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
..+++|.++|+++++... +|.|..||..++......... ...-..++|.++++.|+++.....|..++.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 456899999998876432 467999998887654443321 223568999999998888887777889998
Q ss_pred CCCCceeEEeccCC----CcEEEEEEcCCCCeEEEEEeC---------------CCcEEEEECCCCeeeEEEe--CCeeE
Q 008393 359 DNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGSCTRVFK--GGTAQ 417 (567)
Q Consensus 359 ~~~~~~~~~~~~h~----~~V~~l~~~p~~~~li~s~~~---------------dg~I~iwd~~~~~~~~~~~--~~~~~ 417 (567)
+.....+. ..... .....+++.++|..++ +-.. +|.|..++.. ++...... ...+.
T Consensus 100 ~g~~~~~~-~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG 176 (314)
T d1pjxa_ 100 DGTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG 176 (314)
T ss_dssp TSCEEECC-SBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred CCcEEEEE-eccccccccCCCcEEEECCCCCEEE-ecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence 75222111 11111 1357899999986444 5321 2345555543 33333322 23457
Q ss_pred EEEecCCC----EEEEE-ECCCeEEEEECCCC-eE-----EEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 418 MRFQPHLG----RYLAA-AAENVVSILDAETQ-AC-----RLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 418 ~~~~~~~~----~l~~~-~~dg~I~i~d~~~~-~~-----~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
++|+++++ .++++ +..+.|..||+... .. ...+.+ +......|++..+|+++++.... .|.+||...
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence 88988764 45444 45788999987543 21 122222 22335689999999987776666 899999876
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCC
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSE 529 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~ 529 (567)
+ ..+..+.......++|+|.++++.|++.. .++.|+.+++..
T Consensus 257 g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 257 G---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp B---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred C---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 5 33444555567788999999998666654 567888888753
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.07 E-value=4e-07 Score=85.83 Aligned_cols=230 Identities=10% Similarity=0.130 Sum_probs=156.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc------cCccEEEEEECCCCC-eEEEE-eCCCcEEEEEcCCC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------HSSLITDVRFSPSMP-RLATS-SFDKTVRVWDADNP 361 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~------h~~~V~~i~fsp~~~-~l~s~-s~dg~I~iwd~~~~ 361 (567)
-..++++++|+++++-...+.|++||.+ ++.+..+.. ....-..+++..+.. ++++. +.++.|.+++..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 101 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-- 101 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc--
Confidence 4689999999988887778999999965 666665532 122345566665544 33333 334567677664
Q ss_pred CceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-----CCeeEEEEecCCCEEEEEECCCe
Q 008393 362 GYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 362 ~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+. .....+++.+++..+++....+.
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence 44444443 3456678999998876 44455666778888765 45555553 23466788888766666666889
Q ss_pred EEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeCC
Q 008393 436 VSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPT 509 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp~ 509 (567)
|++||... +.+..+. +.......|+++++|+++++-..+ .|.+|+.. + +.+..+... ......+++.++
T Consensus 180 V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEETT
T ss_pred eeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEEEEEeCCCCCCCEeEEEEeCC
Confidence 99999754 5555553 344567899999999988776543 69999843 3 445444332 345788999999
Q ss_pred CCeEEEEEcCCeEEEEECCCC
Q 008393 510 YPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~ 530 (567)
|. |+++..++.|++|.....
T Consensus 255 G~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 255 GS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TE-EEEEETTTEEEEEECSCC
T ss_pred Cc-EEEEeCCCeEEEEEeeee
Confidence 96 566678899999998654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=6.6e-08 Score=98.45 Aligned_cols=292 Identities=10% Similarity=0.049 Sum_probs=166.1
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe---------CCCcEEEEeCCCCeeeeee--cccCccEEE
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNL--EEHSSLITD 334 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~---------~dg~I~vwd~~~~~~~~~l--~~h~~~V~~ 334 (567)
+.++++..+..-..+..-....-.+....|||||++++... ..+.+.+||+.+++..... ......+..
T Consensus 39 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~ 118 (465)
T d1xfda1 39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQY 118 (465)
T ss_dssp EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSB
T ss_pred EEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccce
Confidence 44555554433222222122233566788999999988764 3578899999987754432 233445667
Q ss_pred EEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE-----------------EEEEEcCCCCeEEEEEeCCCcE
Q 008393 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 335 i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~li~s~~~dg~I 397 (567)
..|+|||+.||... ++.|.+.+..+......+..+....| ..+.|+|||++|++.--.+..|
T Consensus 119 ~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V 197 (465)
T d1xfda1 119 AGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (465)
T ss_dssp CCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred eeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccc
Confidence 89999999998876 55688888876333222322322222 4677999999988765555544
Q ss_pred EEEE---------------------------------CCCCeeeEEEeC---------CeeEEEEecCCCEEEEEEC-C-
Q 008393 398 RYWS---------------------------------INNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAA-E- 433 (567)
Q Consensus 398 ~iwd---------------------------------~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~-d- 433 (567)
..+. +.++........ -...+.|.+++..++.... +
T Consensus 198 ~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q 277 (465)
T d1xfda1 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ 277 (465)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred ceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcccc
Confidence 4443 333222111100 1244678887654443333 1
Q ss_pred --CeEEEEECCCCeEEEEecCC-CCCe----eEEEEcCCCCEEEE--Ee----CCeEEEEeCCCC---CCCceEEEeecC
Q 008393 434 --NVVSILDAETQACRLSLQGH-TKPI----DSVCWDPSGELLAS--VS----EDSVRVWTVGSG---SEGECVHELSCN 497 (567)
Q Consensus 434 --g~I~i~d~~~~~~~~~~~~h-~~~V----~~l~~sp~g~~l~s--~s----~d~I~iwd~~~~---~~~~~i~~~~~~ 497 (567)
..|.++|..++++...+..+ ...| ....|+++|+.++. .+ .+.++.+++... .....+..+...
T Consensus 278 ~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G 357 (465)
T d1xfda1 278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (465)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred ccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC
Confidence 36888999999776655432 2222 34678999984432 22 124554443211 112223333333
Q ss_pred CCceEEE-EEeCCCCeEEEEEcCC-----eEEEEECCCCcEE---Ee-ccccCCeeEEEEecCCCEEEEEE
Q 008393 498 GNKFHSC-VFHPTYPSLLVIGCYQ-----SLELWNMSENKTM---TL-TAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 498 ~~~i~~~-~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~---~~-~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.-.|..+ .|+.+++.|+..+... .|+-.++..+... +. .........+.|||++++++..+
T Consensus 358 ~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 4445554 6888888777655422 3555555544322 11 13344577999999999987544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=4.2e-07 Score=85.71 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=153.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc------CCCcEEEEEEcCCCCeEEEEE-eCCCcEEEEECC
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSC-DGDGEIRYWSIN 403 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~li~s~-~~dg~I~iwd~~ 403 (567)
.-..|+++++++++++-..+..|++||.+ +..+..+.. .......+++..+...++++. +.++.|.+++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC--CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence 35789999999877777778889999876 444444421 122345667666655455443 44567777775
Q ss_pred CCeeeEEEeC----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe--cCCCCCeeEEEEcCCCCEEEEEeCC-e
Q 008393 404 NGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-S 476 (567)
Q Consensus 404 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~d-~ 476 (567)
.+.....+.. ....+++.+++..+++....+.+.+++... +.+..+ ..+......+++.++++++++.... .
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccc
Confidence 4555555532 346788888877777766678888888654 445554 3455678889999999888777766 9
Q ss_pred EEEEeCCCCCCCceEEEee--cCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEE-Ee--ccccCCeeEEEEecC
Q 008393 477 VRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM-TL--TAHEGLIAALAVSTE 550 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~--~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~-~~--~~h~~~V~~l~~spd 550 (567)
|++||... +.+..+. +.......+++.++|+.+++-.. ++.|.+|+.. ++.+ .+ .........|++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCC
Confidence 99999743 3444443 23445788999999985555443 3479999854 5543 33 233346889999999
Q ss_pred CCEEEEEECCCcEEEcC
Q 008393 551 TGYVASASHDKFVKLWK 567 (567)
Q Consensus 551 g~~l~s~s~Dg~I~iWd 567 (567)
|.+++ ++.++.|++|+
T Consensus 255 G~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp TEEEE-EETTTEEEEEE
T ss_pred CcEEE-EeCCCeEEEEE
Confidence 97554 56789999985
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.96 E-value=1.1e-06 Score=84.55 Aligned_cols=225 Identities=11% Similarity=0.099 Sum_probs=144.0
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCCCe
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNGS 406 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~~~ 406 (567)
.+..++|.++|+++++-...+.|+.|+.++ +.....+.........|++.++|..++ +... .+.|...+.....
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g-~~~~~~~~~~~~~p~gla~~~dG~l~v-a~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFV-CYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEE-EECTTSSSCCEEEEECTTSCS
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCC-CeEEEEEeCCCCCeeEEEECCCCCEEE-EecCCCccceeEEEEcCCCce
Confidence 456889999998777777889899999876 444444555666789999999986444 4322 2345556666555
Q ss_pred eeEEEeC-----CeeEEEEecCCCEEEEEEC------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-
Q 008393 407 CTRVFKG-----GTAQMRFQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE- 474 (567)
Q Consensus 407 ~~~~~~~-----~~~~~~~~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~- 474 (567)
....... ....+.+.+++..+++... .+.+..++........... .-...+.|+|+++++.|+.+..
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~ 197 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETT 197 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGG
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEeccc
Confidence 4444432 2456888998765444322 2346666665543332222 2234578999999997766654
Q ss_pred C-eEEEEeCCCCCCCce-E----EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec------cccCC
Q 008393 475 D-SVRVWTVGSGSEGEC-V----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT------AHEGL 541 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~-i----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~------~h~~~ 541 (567)
. .|..|++........ . ............+++..+|++.++....+.|.+||- +++.+ .+. ++...
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~ 276 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 276 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence 3 899999864321111 1 111112233567899999997777788899999996 56554 332 34446
Q ss_pred eeEEEEecCCCEEEEEEC
Q 008393 542 IAALAVSTETGYVASASH 559 (567)
Q Consensus 542 V~~l~~spdg~~l~s~s~ 559 (567)
+++++|.+++..+++...
T Consensus 277 ~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 277 STHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CCEEEECTTSCEEEEEEE
T ss_pred eeeEEEeCCCCEEEEEcC
Confidence 889999998877666544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.95 E-value=2.4e-07 Score=89.04 Aligned_cols=232 Identities=8% Similarity=-0.017 Sum_probs=144.0
Q ss_pred cEEEEEECCCCCeEEEEeC-------CCcEEEEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 331 LITDVRFSPSMPRLATSSF-------DKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
....++|.++|+++++... +|.|..||..+......... ...+....+.|.++++.++ +++..+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECCCeEEEE
Confidence 3567899999987776433 46788888887333221111 1123467899999987666 45556678888
Q ss_pred ECCCCeeeEEEe---C----CeeEEEEecCCCEEEEEEC---------------CCeEEEEECCCCeEEEEecCCCCCee
Q 008393 401 SINNGSCTRVFK---G----GTAQMRFQPHLGRYLAAAA---------------ENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 401 d~~~~~~~~~~~---~----~~~~~~~~~~~~~l~~~~~---------------dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
+........... + ..+.+.+.+++..+++-.. .+.|+.++... +...... .-..-+
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~-~~~~pN 175 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT-AFQFPN 175 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE-EESSEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC-Ccceee
Confidence 887654332211 1 2466889998766655321 23555555433 2222221 223346
Q ss_pred EEEEcCCCC----EEEEE-eCC-eEEEEeCCCCCCCc---eEEEeecC-CCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 459 SVCWDPSGE----LLASV-SED-SVRVWTVGSGSEGE---CVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 459 ~l~~sp~g~----~l~s~-s~d-~I~iwd~~~~~~~~---~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.++|+++++ .|+.+ +.. .|..||+....... .+..+... ......+++..+|+.+++....+.|.+||..
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 889998765 45444 444 88888876432211 11222221 2235678999999977777778899999998
Q ss_pred CCcEE-EeccccCCeeEEEEecCCCE-EEEEECCCcEEE
Q 008393 529 ENKTM-TLTAHEGLIAALAVSTETGY-VASASHDKFVKL 565 (567)
Q Consensus 529 ~~~~~-~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~i 565 (567)
++... .+......+++++|.++++. +++.+.+|.|..
T Consensus 256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence 77654 45555567899999999974 456666777654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.83 E-value=3.9e-07 Score=85.25 Aligned_cols=231 Identities=9% Similarity=0.054 Sum_probs=133.3
Q ss_pred EEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-CC-----cEEEEEcCCCCcee
Q 008393 294 HFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK-----TVRVWDADNPGYSL 365 (567)
Q Consensus 294 ~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg-----~I~iwd~~~~~~~~ 365 (567)
..+|| |+.+|..+ ++.|.+.|+.+++.. .|..+...+...+|+|||++||.... ++ .|.+++..+ +. .
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-g~-~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-GE-I 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-TE-E
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC-Cc-e
Confidence 45788 99888764 567999999987754 56667778899999999999886643 22 366667665 32 2
Q ss_pred EEeccC-------CCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECC
Q 008393 366 RTFMGH-------SASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 366 ~~~~~h-------~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
..+..+ ........|+|+++.++++...+ ..+...+...+............ .+.+++..++.....
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH-ILFADGRRVIGRNTF 159 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE-EEEETTEEEEEESCS
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccce-eeecCCCeEEEeecc
Confidence 333222 23456788999998877654322 23555666555544333333333 344444444443221
Q ss_pred ------------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCC
Q 008393 434 ------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 434 ------------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
....++........... .+........++++..+......+ .|.++|+.++.. +.+ ... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l---t~~-~ 233 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKH---TSF-T 233 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EEC---CCC-C
T ss_pred ccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce-EEe---ecC-C
Confidence 11222222222222222 233444556666654322222222 688889876532 222 211 1
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 536 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~ 536 (567)
......|+|||+.|+.. .++.|+++|+.+++...+.
T Consensus 234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence 22234689999988764 4688999999999877553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=6.4e-07 Score=90.94 Aligned_cols=246 Identities=12% Similarity=0.142 Sum_probs=146.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCcc-----------------EEEEEECCCCCeEEEEe
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSL-----------------ITDVRFSPSMPRLATSS 348 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~-----------------V~~i~fsp~~~~l~s~s 348 (567)
...+....|||||+.||... ++.|.+.+..++..+.... +.... -..+.|+|||++||...
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 34455688999999998875 7788888887766554433 21111 24678999999998875
Q ss_pred CC-Cc---------------------------------EEEEEcCCCCceeEEe-----ccCCCcEEEEEEcCCCCeEEE
Q 008393 349 FD-KT---------------------------------VRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 349 ~d-g~---------------------------------I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~li~ 389 (567)
.| .. +.|+|+++........ ......+..+.|.+++..++.
T Consensus 192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~ 271 (465)
T d1xfda1 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (465)
T ss_dssp EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEE
Confidence 32 22 3344444322111111 112234677899998764444
Q ss_pred EEeCC---CcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEE--EEC-C--CeEEEEECC------CCeEE
Q 008393 390 SCDGD---GEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLA--AAA-E--NVVSILDAE------TQACR 447 (567)
Q Consensus 390 s~~~d---g~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~--~~~-d--g~I~i~d~~------~~~~~ 447 (567)
....+ ..|.++|..++++...+.. ......|.+++..++. ... + +.++.+++. .+..+
T Consensus 272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~ 351 (465)
T d1xfda1 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351 (465)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence 44433 3688899999987766542 1234578888876543 222 2 344444321 22333
Q ss_pred EEecCCCCCeeEE-EEcCCCCEEEEEe-CC-----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-
Q 008393 448 LSLQGHTKPIDSV-CWDPSGELLASVS-ED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY- 519 (567)
Q Consensus 448 ~~~~~h~~~V~~l-~~sp~g~~l~s~s-~d-----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d- 519 (567)
..+....-.|..+ +|+.+++.|+..+ .+ .|+-.++..+...+|+............+.|+|++++++..+..
T Consensus 352 ~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~ 431 (465)
T d1xfda1 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (465)
T ss_dssp CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred EEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecC
Confidence 3444334456665 6888887766443 22 24444555444444443333345567889999999998866554
Q ss_pred --CeEEEEECCCCcEE
Q 008393 520 --QSLELWNMSENKTM 533 (567)
Q Consensus 520 --g~I~iwd~~~~~~~ 533 (567)
-.+.+++..+++.+
T Consensus 432 ~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 432 GVPMVTVHNTTDKKKM 447 (465)
T ss_dssp SSCCEEEEETTTCCEE
T ss_pred CCCeEEEEECCCCCEE
Confidence 36788888877765
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.82 E-value=2.8e-07 Score=88.08 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=130.7
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeee-cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l-~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
....+.+.+++|++||+++++...++.+.+|+..... ..... .........+++.++++++++.+.++.+..++...
T Consensus 64 ~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~ 143 (302)
T d2p4oa1 64 ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 143 (302)
T ss_dssp EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccC
Confidence 3445678899999999999998888888888765332 21111 13445688999999999988888889898888876
Q ss_pred CCceeEEec---------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE---EE--eCCeeEEEEecCCCE
Q 008393 361 PGYSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VF--KGGTAQMRFQPHLGR 426 (567)
Q Consensus 361 ~~~~~~~~~---------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~---~~--~~~~~~~~~~~~~~~ 426 (567)
....+.... .....+..+.+. +..++++....+.|+.+++....... .+ ......+++.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l 221 (302)
T d2p4oa1 144 PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL 221 (302)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE
T ss_pred CcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCE
Confidence 332222211 112345566665 46788888889999999987654321 11 233456999999987
Q ss_pred EEEEECCCeEEEEECCCCeE-EEEecCCCCCeeEEEE---cCCCCEEEEEeCC
Q 008393 427 YLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW---DPSGELLASVSED 475 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~V~~l~~---sp~g~~l~s~s~d 475 (567)
+++...++.|..++...... +......-...++++| .+|++.|+.++..
T Consensus 222 ~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 222 YGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 77777789999998875432 3333434456889999 6788888766544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.69 E-value=3e-05 Score=73.22 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=146.2
Q ss_pred EEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-
Q 008393 292 CCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 369 (567)
Q Consensus 292 ~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~- 369 (567)
+..|++. ++++.+--..+.|..||.++++... +. ....+.++++.+++.++++ +.+| |.++|..+... .....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~-~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVL-TLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCE-EEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEE-EeCc-cEEeeccccee-eEEeee
Confidence 4567764 4455554567899999998876542 22 3446889999988866654 5555 89999987432 22211
Q ss_pred -c--CCCcEEEEEEcCCCCeEEEEEeC---CCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CCeEEEEE
Q 008393 370 -G--HSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILD 440 (567)
Q Consensus 370 -~--h~~~V~~l~~~p~~~~li~s~~~---dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~I~i~d 440 (567)
. ....+..+.+.++|..++.+... .+.-.+|.+..++....+.. ....+.|++++..++.+.. .+.|+.|+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence 1 12357889999998755543322 23456677667765554432 4567899999988777665 67899888
Q ss_pred CCC------C--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe-CCC
Q 008393 441 AET------Q--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTY 510 (567)
Q Consensus 441 ~~~------~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s-p~~ 510 (567)
+.. + .....+.+.......++++.+|++.++.-.+ .|..||.. + +.+..+......+++|+|- ++.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTS
T ss_pred ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C---cEeeEecCCCCceEEEEEeCCCC
Confidence 642 1 2223334445567899999999988777666 89999953 4 5677777666779999996 677
Q ss_pred CeEEEEEc
Q 008393 511 PSLLVIGC 518 (567)
Q Consensus 511 ~~l~~~~~ 518 (567)
+.|++.+.
T Consensus 253 ~~LyvTta 260 (295)
T d2ghsa1 253 SRLLVTSA 260 (295)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEEC
Confidence 77776643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.60 E-value=5.2e-05 Score=71.48 Aligned_cols=214 Identities=8% Similarity=0.041 Sum_probs=137.9
Q ss_pred EEEECCCCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 334 DVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 334 ~i~fsp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
...|++....|+ +=-..+.|..||.++... ..+ .....+.++++.+++. ++++ +. ..|.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--~~~-~~~~~~~~i~~~~dg~-l~va-~~-~gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK--TVH-ALPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEE-ECSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTCCEEEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeE--EEE-ECCCCcEEEEEecCCC-EEEE-Ee-CccEEeecccceeeEEee
Confidence 456776544444 333567899999887322 222 2356788999988864 5534 43 469999999987655432
Q ss_pred C-------CeeEEEEecCCCEEEEEEC----CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEE
Q 008393 413 G-------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRV 479 (567)
Q Consensus 413 ~-------~~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~i 479 (567)
. ....+.+.+++..++.... .+.-.+|.+..++....+.. -...+.++|+++++.++..... .|..
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence 1 2456778888776655443 23455666666655544433 2345789999999977666554 8888
Q ss_pred EeCCCCC-----CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe-cCCC
Q 008393 480 WTVGSGS-----EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS-TETG 552 (567)
Q Consensus 480 wd~~~~~-----~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s-pdg~ 552 (567)
|++.... .......+.........+++..+|++.++.-..+.|..||-. ++.+ .+..-...+++++|- +|.+
T Consensus 175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSC
T ss_pred eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCCC
Confidence 8875321 112223333445567889999999877666677899999965 5555 444434569999996 6665
Q ss_pred EEE
Q 008393 553 YVA 555 (567)
Q Consensus 553 ~l~ 555 (567)
.|+
T Consensus 254 ~Ly 256 (295)
T d2ghsa1 254 RLL 256 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.59 E-value=2.4e-06 Score=79.60 Aligned_cols=197 Identities=9% Similarity=0.049 Sum_probs=108.6
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeC-C-----CcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEe
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGH-D-----KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSS 348 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~-d-----g~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s 348 (567)
+.|..+.+.+...+|||||+.||.... + ..|.+++..+++...... ........+.|+|+++.|+...
T Consensus 34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 445556777889999999999986542 2 247888888777654322 1223467889999999988764
Q ss_pred CC------CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-----------cEEEEECCCCeeeEEE
Q 008393 349 FD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----------EIRYWSINNGSCTRVF 411 (567)
Q Consensus 349 ~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-----------~I~iwd~~~~~~~~~~ 411 (567)
.. ..+.+.+.+. .. .... +...... .+.+++..+++....+. ...++...........
T Consensus 114 ~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T d1k32a2 114 AMQPFSSMTCLYRVENDG-IN-FVPL--NLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 188 (281)
T ss_dssp TTSSSTTCCEEEEEEGGG-TE-EEEC--CSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred ccCCCccceeeeeecCCC-ce-eEEe--cCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeecc
Confidence 32 2244555543 22 2222 1222222 33344444443332221 1122222222222222
Q ss_pred eC--CeeEEEEecCCCEEEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 008393 412 KG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 486 (567)
Q Consensus 412 ~~--~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~ 486 (567)
.. ......+.+ ..++.... ...|+++|+.+++... +..+. ......|+|||+.|+....+.|+++|+.+++
T Consensus 189 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~-~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 189 DMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 264 (281)
T ss_dssp CCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCccccceeeeec--cccceecccccccceEEEeCCCCceEE-eecCC-CcccccCcCCCCEEEEEeCCEEEEEECCCCC
Confidence 22 222233333 34444443 3478889998876543 32222 2233468999999888766689999998763
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=0.00088 Score=61.48 Aligned_cols=242 Identities=9% Similarity=-0.006 Sum_probs=153.4
Q ss_pred CeEEEEeCCCcEEEEeCCCCee-----eeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCC
Q 008393 300 KLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSA 373 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~-----~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~ 373 (567)
.+|+.+. .+.|+-.+++.... ...+..+...+..|+|....+.|+-+. .++.|+..+++. ......+.....
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc-CCcEEEEEeccc
Confidence 3444443 35666666653321 223444555688899998877776664 567788888876 333333433346
Q ss_pred cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEE
Q 008393 374 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACR 447 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~ 447 (567)
.+.+|++..-+..++++-...+.|.+.++....+...+. .....+++.|..+.++..... ..|...++......
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 789999987777888777778899999998766544433 245778899999988877653 24666677655433
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEE
Q 008393 448 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLEL 524 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~i 524 (567)
......-.....|++++.++.|+.+... .|...++... .....+.+.. ....+++. +.+|+... ..+.|..
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIA 233 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEE
Confidence 3333334566899999888878777644 8988998643 1222223222 33566665 45676665 4568999
Q ss_pred EECCCCcEEEec--cccCCeeEEEEec
Q 008393 525 WNMSENKTMTLT--AHEGLIAALAVST 549 (567)
Q Consensus 525 wd~~~~~~~~~~--~h~~~V~~l~~sp 549 (567)
.|..+++..... ........+.+.+
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 234 MDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EECCCCccceEECCCCCCCcceEEEeC
Confidence 999888766332 2333444555543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.33 E-value=2.3e-05 Score=76.67 Aligned_cols=269 Identities=10% Similarity=0.058 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCeEEEEeCCC-----------cEEEEeCCCCeeeee--e-cccCccEEEEEECCCCCeEEEEeCC-CcEE
Q 008393 290 VICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSKTN--L-EEHSSLITDVRFSPSMPRLATSSFD-KTVR 354 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg-----------~I~vwd~~~~~~~~~--l-~~h~~~V~~i~fsp~~~~l~s~s~d-g~I~ 354 (567)
+.......+|++++.|+.+. .+.+||..+++.... . ..|.......++.+++++++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34455667899999888531 377999988764332 1 2333344566888999999988765 5799
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEEeC---------------
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--------------- 413 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~~~--------------- 413 (567)
+||..+..............-...+..+++..++ .|+.+ ..+.+||..+.+....-..
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v-~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 180 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT-IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE-ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred EecCccCcccccccccccccccceeeecCCceee-eccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence 9999873321111111112234566677776444 55432 4689999998765432110
Q ss_pred --CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC------CCCC--eeEEEE-cCCCCEEEEEeCC-------
Q 008393 414 --GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG------HTKP--IDSVCW-DPSGELLASVSED------- 475 (567)
Q Consensus 414 --~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------h~~~--V~~l~~-sp~g~~l~s~s~d------- 475 (567)
....+...+++..++.+...+.+.++|..+......... +... -.++.+ ..++++++.|+..
T Consensus 181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence 011122334455555566667778888877654322110 1111 122223 3467777777632
Q ss_pred --eEEEEeCCCCCCCceEEE-ee--cCCCceEEEEEeCCCCeEEEEEcC-----------CeEEEEECCCCcEEEecccc
Q 008393 476 --SVRVWTVGSGSEGECVHE-LS--CNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTLTAHE 539 (567)
Q Consensus 476 --~I~iwd~~~~~~~~~i~~-~~--~~~~~i~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~~~~~h~ 539 (567)
...++++........... .. .......+.+..++++.+++|+.+ ..+.+||..+.+...+....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~ 340 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS 340 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC
Confidence 233444332211111111 11 111223455667899988888753 15789999888765443221
Q ss_pred C--Ce-eEEEEecCCCEEEEEEC
Q 008393 540 G--LI-AALAVSTETGYVASASH 559 (567)
Q Consensus 540 ~--~V-~~l~~spdg~~l~s~s~ 559 (567)
. .- ....+.+||++|+.|+.
T Consensus 341 ~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 341 IVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEEECCCCEEEEEeCC
Confidence 1 11 23345799999999884
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.15 E-value=0.00025 Score=68.31 Aligned_cols=253 Identities=9% Similarity=0.041 Sum_probs=151.7
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeeccc---------------------------------------CccEE--EEEECC-
Q 008393 302 LATGGHDKKAVLWHTDTLKSKTNLEEH---------------------------------------SSLIT--DVRFSP- 339 (567)
Q Consensus 302 lasg~~dg~I~vwd~~~~~~~~~l~~h---------------------------------------~~~V~--~i~fsp- 339 (567)
|.+|+..|.|+|+-+.+++.+..+... .+... .+.|..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 456788888888888877776654310 00111 334433
Q ss_pred --CCCeEEEEe-CCCcEEEEEcCCCCceeEEec-cCCCcEEEEEEcC--CCCeEEEEEeCC------------------C
Q 008393 340 --SMPRLATSS-FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHP--NKDDLICSCDGD------------------G 395 (567)
Q Consensus 340 --~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p--~~~~li~s~~~d------------------g 395 (567)
||++|++.. .+..|.+.|+++ .++..... .....+..++..+ +..+++ ..+.+ +
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~-fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~-~~~e~~vP~pndg~~l~d~~~y~~ 173 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVF-CNGEDETPLVNDGTNMEDVANYVN 173 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEE-EEECSCEESSCSSSSTTCGG-EEE
T ss_pred ccceeEEEEEcCCCceEEEEECcc-eeeeEEEecCCCCCCceeecccCCCeEEEE-ccCccccccCCCCccccchhhcce
Confidence 688887776 578899999997 55444332 2345567777644 434433 33332 3
Q ss_pred cEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCC---------------eE----------------------
Q 008393 396 EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN---------------VV---------------------- 436 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg---------------~I---------------------- 436 (567)
.+.++|..+.+...... +....+.++++++++++.+.+. .+
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 36788999888776554 4556789999999988887531 23
Q ss_pred -EEEECCCC---eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC--------CCCceEEEeecCCCceE
Q 008393 437 -SILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG--------SEGECVHELSCNGNKFH 502 (567)
Q Consensus 437 -~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~--------~~~~~i~~~~~~~~~i~ 502 (567)
.+.|.++. ..+..+.. ......+.++|||+++++++.- ++.|+|++.. ....++..-...+-.-.
T Consensus 254 V~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL 332 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 332 (459)
T ss_dssp EEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred ceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence 33343321 11111211 1234578899999999988865 8999999632 11222222222344455
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCC----------cEE-EeccccCCeeEE------EEecCCCEEEEEE
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSEN----------KTM-TLTAHEGLIAAL------AVSTETGYVASAS 558 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~----------~~~-~~~~h~~~V~~l------~~spdg~~l~s~s 558 (567)
..+|+..|....+.--|..|.-|++... ..+ .+..|-. +-.+ ...|+|++|++..
T Consensus 333 ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 333 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence 6689888865555567899999998432 222 3322221 1111 2368899998876
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=0.0019 Score=59.09 Aligned_cols=216 Identities=8% Similarity=-0.012 Sum_probs=136.8
Q ss_pred eEEEEeCCCcEEEEEcCCCCc----eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---Ce
Q 008393 343 RLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT 415 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~ 415 (567)
+|+.+.. +.|+-.+++.... ....+..+...+..|+|+..++.++.+-..++.|+..++........+.. ..
T Consensus 3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 3444333 3577777764221 11223334456788999988888887777788899999987666555543 45
Q ss_pred eEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--e--EEEEeCCCCCCCce
Q 008393 416 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--S--VRVWTVGSGSEGEC 490 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~--I~iwd~~~~~~~~~ 490 (567)
..+++..-++.++.+.. .+.|.+.++........+.........++++|...+|+....+ . |...++... ....
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~ 160 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRI 160 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEE
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Ccee
Confidence 67889887888877665 6799999998765444444444678899999977777765443 3 444455432 1122
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE-CCCcEE
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS-HDKFVK 564 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~ 564 (567)
.....-.....+++.+.+..|+.+. ..+.|...|+.......+........+|++. +.+|.-.. ..+.|.
T Consensus 161 --i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 161 --LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVI 232 (263)
T ss_dssp --EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred --eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEE
Confidence 2222334567899999888887775 4579999999876655333222334677775 34454443 334443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.0039 Score=57.08 Aligned_cols=228 Identities=8% Similarity=-0.045 Sum_probs=146.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCC--c-eeEEeccCCCcEE
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG--Y-SLRTFMGHSASVM 376 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~--~-~~~~~~~h~~~V~ 376 (567)
+|+.+. ...|+..++++......+. ....+..|+|.+..+.|+-.. .++.|...+++... . ....+......+.
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 344433 3468888887655444433 445678999998888777665 45667777765311 1 1122333345577
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEec
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 451 (567)
.|++.+.+..++++-...+.|.+.++........... ....+++.|..+.++.... .+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 8999887888888877888999999987765554443 4567889998888887764 4568778877655444444
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 528 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 528 (567)
..-.....|++++.++.|+.+... .|...++... ....+............+++. +.+|+.+. .++.|+..+..
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCC-CEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence 444667899999988877777554 8999998643 223333322223345566666 34566665 45688888877
Q ss_pred CCcEE
Q 008393 529 ENKTM 533 (567)
Q Consensus 529 ~~~~~ 533 (567)
++...
T Consensus 238 ~g~~~ 242 (266)
T d1ijqa1 238 TGSDV 242 (266)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 76544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.90 E-value=0.0082 Score=54.56 Aligned_cols=247 Identities=10% Similarity=0.161 Sum_probs=151.8
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeE
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 387 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 387 (567)
...|.|.|+.+.....+-.- .--+...+|..+.||.-+ ..++.|+|+++ +..++.+. ....|.--.|..+. .|
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnlet-K~klks~~-~~e~VvfWkWis~~-~L 116 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHT-MTDDVTFWKWISLN-TV 116 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEE-CSSCCCEEEESSSS-EE
T ss_pred CceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhH-hhhhceEE-cCCCcEEEEecCCC-EE
Confidence 45788899876543222111 112345678888887766 56799999998 66666655 34566667776553 33
Q ss_pred EEEEeCCCcEEEEECCCC-eeeEEEeCC-------eeEEEEecCCCEEEEEEC-------CCeEEEEECCCCeEEEEecC
Q 008393 388 ICSCDGDGEIRYWSINNG-SCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~-~~~~~~~~~-------~~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~~ 452 (567)
.+.. +..|+-|+++.. ...+.|..+ +-....+++.++++..+- .|.+.+|..+.+.. ..+++
T Consensus 117 ~lVT--~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieG 193 (327)
T d1utca2 117 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG 193 (327)
T ss_dssp EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC
T ss_pred EEEc--CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccc
Confidence 3332 668999999543 355555432 233456777787766543 36788998887643 25666
Q ss_pred CCCCeeEEEEcCCC---CEEEEEeC---C-eEEEEeCCCCCCC-----ceEEEee----cCCCceEEEEEeCCCCeEEEE
Q 008393 453 HTKPIDSVCWDPSG---ELLASVSE---D-SVRVWTVGSGSEG-----ECVHELS----CNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 453 h~~~V~~l~~sp~g---~~l~s~s~---d-~I~iwd~~~~~~~-----~~i~~~~----~~~~~i~~~~~sp~~~~l~~~ 516 (567)
|......+.+..+. .+++.+.. + +++|.++...... +....+. ...+-..++.+++....++..
T Consensus 194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi 273 (327)
T d1utca2 194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 273 (327)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence 65444333332211 24444432 2 7889998763221 1111221 113446778899999999999
Q ss_pred EcCCeEEEEECCCCcEEE-eccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 517 GCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+..|.|++||++++.++. -.-....|..-+-..+..=++....+|.|.
T Consensus 274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 999999999999999883 334455666555555544566666777654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.0095 Score=54.31 Aligned_cols=214 Identities=11% Similarity=0.042 Sum_probs=134.7
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe----eeEEEe---CCe
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK---GGT 415 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~----~~~~~~---~~~ 415 (567)
+|+.+... .|+..++++... ..+......+..|+|++..+.++.+-..++.|+..++.... ....+. ...
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECCC-eEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 34444433 488899986332 33334556788999999888887776667778877775422 112222 245
Q ss_pred eEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i 491 (567)
..+++.+.++.++.+.. .+.|.++++........+.........|+++|...+|+....+ .|...++... ...
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~ 156 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 156 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---cee
Confidence 67899988888887765 5789999998877666666566778899999966666655433 5666666432 122
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEEEe---ccccCCeeEEEEecCCCEEEEE-ECCCcEE
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTL---TAHEGLIAALAVSTETGYVASA-SHDKFVK 564 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~~---~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~ 564 (567)
......-.....+++.+.+..|+.+.. .+.|...++.......+ ........+|++. +.+|.-+ ..++.|.
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 232 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEE
Confidence 222233455788999998888888754 57999999977654322 2222345677765 3344433 3445554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.80 E-value=0.011 Score=58.04 Aligned_cols=240 Identities=8% Similarity=0.036 Sum_probs=133.0
Q ss_pred CeEEEEEcCCCCeEEEEe-----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-------------
Q 008393 289 KVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------- 350 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~-----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d------------- 350 (567)
.+..+++|||++++|.+- ....|+++|+.+++.+...-. ......++|.+|++.|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 344567899999988542 234799999999987643211 1112568899999987765432
Q ss_pred ---CcEEEEEcCCCCce-eEEeccC--CCcEEEEEEcCCCCeEEEEEeC--CCc--EEEEECCCCe--------eeEEEe
Q 008393 351 ---KTVRVWDADNPGYS-LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGE--IRYWSINNGS--------CTRVFK 412 (567)
Q Consensus 351 ---g~I~iwd~~~~~~~-~~~~~~h--~~~V~~l~~~p~~~~li~s~~~--dg~--I~iwd~~~~~--------~~~~~~ 412 (567)
..|.+|.+.+.... ...+... ...+..+..+.++.++++.... +.. +.+.|+.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 25888888764322 2333332 3456778888998887765432 333 4444544321 112222
Q ss_pred CCeeEEE-EecCCCEEEEEEC----CCeEEEEECCCCeE---EEEecCCCCCeeEEEEcCCCCEEE-EEeCC---eEEEE
Q 008393 413 GGTAQMR-FQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLA-SVSED---SVRVW 480 (567)
Q Consensus 413 ~~~~~~~-~~~~~~~l~~~~~----dg~I~i~d~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~-s~s~d---~I~iw 480 (567)
....... +...++.+++.+. ++.|...++..... ...+..+...+..-.+...+.+|+ ..-.+ .|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence 2111111 2223455555443 45777777765421 222333444454434444444444 44444 68999
Q ss_pred eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcE
Q 008393 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKT 532 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~ 532 (567)
++.++. ...........+..+...++...+.....+ .+++-||+.+++.
T Consensus 365 ~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 365 DLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp ETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ECCCCc---EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 997653 222333334445555555566555544333 5899999988753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.79 E-value=0.0018 Score=66.45 Aligned_cols=184 Identities=9% Similarity=0.072 Sum_probs=108.5
Q ss_pred CCCeEEEEeCCCcEEEEeC-CCCeeeeeecccCc----c-------EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 298 DGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSS----L-------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~-~~~~~~~~l~~h~~----~-------V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
+|.++++.+.++.|...|. ++|+.+.++..... . -+.+++. +..|+.++.||.|.-.|.+++ +.+
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG-~~~ 138 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTG-KIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTC-CEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhh-hhh
Confidence 4444444444688888887 47888877642100 0 0123333 347888899999999999984 433
Q ss_pred EEeccC----CCcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCe--------------------
Q 008393 366 RTFMGH----SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGT-------------------- 415 (567)
Q Consensus 366 ~~~~~h----~~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~-------------------- 415 (567)
-..... ...++.--...+ ..++ .+. .+|.|+-+|+++++.+..+....
T Consensus 139 w~~~~~~~~~~~~~t~~p~v~~-~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~ 216 (571)
T d2ad6a1 139 WEVEVCDPKVGSTLTQAPFVAK-DTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEET-TEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred ccccccccccccceeecCeEeC-CeEE-EeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCc
Confidence 322211 111111111112 3344 443 36789999999999988754210
Q ss_pred ---------------------eEEEEecCCCEEEEEEC----------------CCeEEEEECCCCeEEEEecCCCCCee
Q 008393 416 ---------------------AQMRFQPHLGRYLAAAA----------------ENVVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 416 ---------------------~~~~~~~~~~~l~~~~~----------------dg~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
....+.+..+.++.+.. ...+...|.++++.+..+......+.
T Consensus 217 ~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~W 296 (571)
T d2ad6a1 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred ccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccc
Confidence 22467777777776665 24688899999999988775322221
Q ss_pred ---------EEEEcCCCC---EEEEEeCC-eEEEEeCCCCC
Q 008393 459 ---------SVCWDPSGE---LLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 459 ---------~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~ 486 (567)
...+..+++ .++..+.+ .++++|..+++
T Consensus 297 d~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 122222443 45566666 88999988774
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.73 E-value=0.0043 Score=59.52 Aligned_cols=189 Identities=15% Similarity=0.161 Sum_probs=120.8
Q ss_pred EEEEcC---CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEE--ecCCCEEEEEECC--------------
Q 008393 377 SLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRF--QPHLGRYLAAAAE-------------- 433 (567)
Q Consensus 377 ~l~~~p---~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~--~~~~~~l~~~~~d-------------- 433 (567)
.+.+.. ||+++++.-..+..|.+.|+.+.++.+.... ....++. .|...++++.+..
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455543 7888888888899999999999998776653 2334454 3455666666652
Q ss_pred ----CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----------------eEEEEeC-----------
Q 008393 434 ----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------------SVRVWTV----------- 482 (567)
Q Consensus 434 ----g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----------------~I~iwd~----------- 482 (567)
+.+.++|..+.+....+.-. .....+.++++|+++++.+.+ .+.++++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 24678999999888776643 356689999999999988742 2344443
Q ss_pred ------------CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCc------------EEEecc
Q 008393 483 ------------GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK------------TMTLTA 537 (567)
Q Consensus 483 ------------~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~------------~~~~~~ 537 (567)
+.......+..+.. ....+.+.++|||+++++++. +.++.|+|+++-. ......
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 21111111212221 223456799999999998876 5699999986321 111112
Q ss_pred ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 538 HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 538 h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..-....-+|+..|....|---|..|.-|+
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred cCcCccccccCCCceEEEEeeccceEEEEe
Confidence 222344567887775555555788888885
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.63 E-value=0.0087 Score=61.44 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=109.3
Q ss_pred CCCeEEEEeCCCcEEEEeC-CCCeeeeeecccC-----------ccEEEEEECCC----CCeEEEEeCCCcEEEEEcCCC
Q 008393 298 DGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHS-----------SLITDVRFSPS----MPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~-~~~~~~~~l~~h~-----------~~V~~i~fsp~----~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+|.++++.+.++.|...|. ++|+.+..+.... ..-+.+++.++ ..+|+.++.|+.|.-.|.++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t- 140 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET- 140 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc-
Confidence 3444444455677777776 5788777654211 01133455432 34688999999999999998
Q ss_pred CceeEEeccC---C-CcEEE-EEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEeCC----------------
Q 008393 362 GYSLRTFMGH---S-ASVMS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG---------------- 414 (567)
Q Consensus 362 ~~~~~~~~~h---~-~~V~~-l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~~~---------------- 414 (567)
++.+..+... . ..++. -.+. ++.++ .+.. .|.|+-+|+++++.+..+...
T Consensus 141 G~~~w~~~~~d~~~~~~~t~~P~v~--~~~vi-vg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~ 217 (596)
T d1w6sa_ 141 GETVWKVENSDIKVGSTLTIAPYVV--KDKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (596)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE--TTEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CceeccccccccccccccccCCcEE--CCeEE-EeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccc
Confidence 4444433211 1 11111 1122 23344 4432 489999999999999876421
Q ss_pred -------------------------eeEEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecC-
Q 008393 415 -------------------------TAQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQG- 452 (567)
Q Consensus 415 -------------------------~~~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~- 452 (567)
-..+.+.+..+.++.+..+ ..|...|+++++.+..+..
T Consensus 218 ~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~ 297 (596)
T d1w6sa_ 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (596)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccce
Confidence 0134667777777776543 3588899999999887764
Q ss_pred -CCC-------CeeEEE-EcCCCC---EEEEEeCC-eEEEEeCCCCC
Q 008393 453 -HTK-------PIDSVC-WDPSGE---LLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 453 -h~~-------~V~~l~-~sp~g~---~l~s~s~d-~I~iwd~~~~~ 486 (567)
|.. ...-+. ...+|+ .++....+ .+.++|..+++
T Consensus 298 ~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred eccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 211 111122 123443 56666767 89999988774
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=0.022 Score=51.61 Aligned_cols=225 Identities=10% Similarity=0.159 Sum_probs=147.5
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+.-.+|..+.||.-+ ..++.+||+++.+.++.+.-.. .|.-=.|-.+. .|+..+. ..|+-|+++....+.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence 455678888887765 5689999999988888776544 45555666443 5555443 459999997766677777666
Q ss_pred C----CcEEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeEEEeCCeeEEE-EecCC----CEEEEEEC----
Q 008393 372 S----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA---- 432 (567)
Q Consensus 372 ~----~~V~~l~~~p~~~~li~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~---- 432 (567)
. ..|.....+++.+.++++|= -.|.+.+|..+.+ .-..++++..+.. +..++ ..+++-+.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 221 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 221 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence 4 46777888888888776652 2467888887754 3445556554443 22221 22333322
Q ss_pred CCeEEEEECCCC--------eEEEEe-cC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 433 ENVVSILDAETQ--------ACRLSL-QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 433 dg~I~i~d~~~~--------~~~~~~-~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
.+.++|.++... +....+ .. -.+--.++..++.-.+++..+.. .|++||++++ .++..-+....
T Consensus 222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~ 298 (327)
T d1utca2 222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 298 (327)
T ss_dssp EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecCCC
Confidence 368888887542 111111 11 12334578888877788888877 9999999988 78887777777
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
.|...+-+.+..-+++...+|.|..
T Consensus 299 ~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 299 TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred ceEEeccCCCCceEEEECCCCeEEE
Confidence 7766566666555777777776543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.57 E-value=0.0045 Score=63.23 Aligned_cols=258 Identities=12% Similarity=0.111 Sum_probs=151.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccCc----------cE-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~~----------~V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
.|++++.++.|.-.|.++|+.+.++..... .+ ..++. .+..++.+..|+.|.-.|..+ ++.+..+.
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~t-G~~~w~~~ 144 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT-GKAIWSQQ 144 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCC-CcEEeccC
Confidence 566677789999999999999987642110 00 11111 134688888899999999888 44443332
Q ss_pred cCC--Cc--EEE-EEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEeCC------------------------
Q 008393 370 GHS--AS--VMS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG------------------------ 414 (567)
Q Consensus 370 ~h~--~~--V~~-l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~~~------------------------ 414 (567)
... .. +.. -.+. + ..++ .+.. .|.|.-+|.++++.+..+...
T Consensus 145 ~~~~~~~~~~~~~p~v~-~-~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVV-K-GKVI-IGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (560)
T ss_dssp CSCTTSSCBCCSCCEEE-T-TEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCcccceeeeeeeeee-c-Cccc-ccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence 211 10 110 0111 1 2233 3322 367999999999999876420
Q ss_pred ----------eeEEEEecCCCEEEEEEC-------------------CCeEEEEECCCCeEEEEecCCCCCee-------
Q 008393 415 ----------TAQMRFQPHLGRYLAAAA-------------------ENVVSILDAETQACRLSLQGHTKPID------- 458 (567)
Q Consensus 415 ----------~~~~~~~~~~~~l~~~~~-------------------dg~I~i~d~~~~~~~~~~~~h~~~V~------- 458 (567)
=..+.+.+..+.++.+.. ...|..+|+++++.+..+......+.
T Consensus 222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~ 301 (560)
T d1kv9a2 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (560)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccce
Confidence 012567777777766542 24688889999998877764322221
Q ss_pred --EEEEcCCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCC----------------------------------
Q 008393 459 --SVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG---------------------------------- 498 (567)
Q Consensus 459 --~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~---------------------------------- 498 (567)
-+.+..+++ .++.+..+ .+.++|..+++. +.......
T Consensus 302 ~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~---i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 378 (560)
T d1kv9a2 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (560)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred eeeeeeecCCceeeeeeecCccceEEEEecCCCcc---cccccccccccccccChhhccccccccccccccceeeeeccc
Confidence 122222343 55566666 899999887742 22211100
Q ss_pred --CceEEEEEeCCCCeEEEEEcC------------------------------------CeEEEEECCCCcEEEeccccC
Q 008393 499 --NKFHSCVFHPTYPSLLVIGCY------------------------------------QSLELWNMSENKTMTLTAHEG 540 (567)
Q Consensus 499 --~~i~~~~~sp~~~~l~~~~~d------------------------------------g~I~iwd~~~~~~~~~~~h~~ 540 (567)
......+++|+...+++...+ |.|.-||+.+++.+-......
T Consensus 379 Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~ 458 (560)
T d1kv9a2 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (560)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC
Confidence 001234677777766664422 468889999998873222233
Q ss_pred CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 541 LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 541 ~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+-.++-.+.+|+.|+.||.++-+|
T Consensus 459 ~~~gg~l~TagglVF~G~~dg~l~A~D 485 (560)
T d1kv9a2 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (560)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCceeEECCCEEEEECCCCcEEEEE
Confidence 333223344577888899999998765
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.55 E-value=0.0077 Score=61.64 Aligned_cols=259 Identities=13% Similarity=0.113 Sum_probs=147.5
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeecccC----------ccE-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEHS----------SLI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h~----------~~V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
.|++++.++.|.-+|.++|+.+..+.... ..+ ..+.+. ...++.++.|+.+.-.|.+++......-.
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence 56667778999999999999998764211 011 112222 33677888888888888888433322211
Q ss_pred c-CC-CcEE--E-EEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeEEEeCC------------------------
Q 008393 370 G-HS-ASVM--S-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG------------------------ 414 (567)
Q Consensus 370 ~-h~-~~V~--~-l~~~p~~~~li~s~~~------dg~I~iwd~~~~~~~~~~~~~------------------------ 414 (567)
. +. ..+. . -.+. +..++ .++. .|.|+.+|.++++.+..+...
T Consensus 157 ~~~~~~~~~~~~~p~v~--~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 157 FEGQKGSLTITGAPRVF--KGKVI-IGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp TTTCCSSCBCCSCCEEE--TTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred ccCCcceEEeecceEEE--eccEE-EeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 1 11 1111 1 0111 23333 4332 468999999999998776321
Q ss_pred ----------e-eEEEEecCCCEEEEEEC-------------------CCeEEEEECCCCeEEEEecCCCCC--------
Q 008393 415 ----------T-AQMRFQPHLGRYLAAAA-------------------ENVVSILDAETQACRLSLQGHTKP-------- 456 (567)
Q Consensus 415 ----------~-~~~~~~~~~~~l~~~~~-------------------dg~I~i~d~~~~~~~~~~~~h~~~-------- 456 (567)
+ ....+.+..+.++.... ...|...|.++++.+..+......
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 0 12556777777766442 136788899999888776542221
Q ss_pred -eeEEEEcCCC---CEEEEEeCC-eEEEEeCCCCCCCceEEEeecC----------------------------------
Q 008393 457 -IDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN---------------------------------- 497 (567)
Q Consensus 457 -V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~---------------------------------- 497 (567)
........++ ..++.++.+ .+.++|..+++. +......
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~ 390 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccc---cccccccccccccccccccceeeeeeccccccceEEeeccc
Confidence 1112222233 245556666 899999888743 2211110
Q ss_pred -CCceEEEEEeCCCCeEEEEEcC-------------------------------------------CeEEEEECCCCcEE
Q 008393 498 -GNKFHSCVFHPTYPSLLVIGCY-------------------------------------------QSLELWNMSENKTM 533 (567)
Q Consensus 498 -~~~i~~~~~sp~~~~l~~~~~d-------------------------------------------g~I~iwd~~~~~~~ 533 (567)
.......+++|+...+++...+ |.|.-||+.+++.+
T Consensus 391 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~ 470 (573)
T d1kb0a2 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (573)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred CCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceE
Confidence 0011234677777766654332 35777888888877
Q ss_pred EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 534 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
-...+..+...=.++-.+.+|++|+.||.++.||
T Consensus 471 W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~D 504 (573)
T d1kb0a2 471 WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (573)
T ss_dssp EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred eeecCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence 2222222222222344677888899999998875
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.52 E-value=0.0055 Score=58.96 Aligned_cols=225 Identities=9% Similarity=0.044 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCeEEEEeCC-CcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCC------CcEEEEEcCCC
Q 008393 290 VICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNP 361 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~d-g~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~d------g~I~iwd~~~~ 361 (567)
..+.++.+||++++.|+.+ ..+.+||..+......-.. ....-...+..+|+++++.|+.+ ..+.+||..+.
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 3467889999999998765 6899999887655432211 11122356677899998888753 35899999874
Q ss_pred CceeEEecc----------CCC-----cEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----------Ce
Q 008393 362 GYSLRTFMG----------HSA-----SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----------GT 415 (567)
Q Consensus 362 ~~~~~~~~~----------h~~-----~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----------~~ 415 (567)
.. ..+.. +.. .-..+...+++. +++.++.++.+.+++..+......... ..
T Consensus 158 ~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (387)
T d1k3ia3 158 TW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 234 (387)
T ss_dssp EE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred ce--eecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCcccccc
Confidence 32 11110 000 001112223333 454666677777888777654432211 11
Q ss_pred eEEEEecCCC-EEEEEECC--------CeEEEEECCC---CeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC-----
Q 008393 416 AQMRFQPHLG-RYLAAAAE--------NVVSILDAET---QACRLSLQG---HTKPIDSVCWDPSGELLASVSED----- 475 (567)
Q Consensus 416 ~~~~~~~~~~-~l~~~~~d--------g~I~i~d~~~---~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d----- 475 (567)
..+.+....+ .+++++.. ....+++... ......... +...-.+.+..+||+++++|+.+
T Consensus 235 ~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~ 314 (387)
T d1k3ia3 235 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 314 (387)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred cEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccC
Confidence 2233333334 44444431 1233333322 111122111 11223356667899999888732
Q ss_pred -------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 476 -------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 476 -------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.+.+||..+. ....+..+......-....+.+||+.++.|+.
T Consensus 315 ~~~~~~~~ve~Ydp~~~-~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 315 EDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcEeceEEEEECCCC-eEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 3678998664 11112111111111123356789998888874
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.46 E-value=0.022 Score=57.95 Aligned_cols=251 Identities=11% Similarity=0.076 Sum_probs=138.5
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEEEEECCCCCeEEEEe------CCCcEEEEEcCCCCceeEEec
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~i~fsp~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~ 369 (567)
..|+.++.|+.+.-.|.++++.+....... ..++.--.-.++ .++.+. .+|.|+-+|+.++....+...
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 367778889999999999999876654211 111111011123 444444 367899999998444333221
Q ss_pred cC------------------------------------CCcE-EEEEEcCCCCeEEEEEeC----------------CCc
Q 008393 370 GH------------------------------------SASV-MSLDFHPNKDDLICSCDG----------------DGE 396 (567)
Q Consensus 370 ~h------------------------------------~~~V-~~l~~~p~~~~li~s~~~----------------dg~ 396 (567)
.. ...+ ...++.+....++ .+.. ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y-~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeee-eecccccCccccccccccccccc
Confidence 10 1112 2345566654333 3332 246
Q ss_pred EEEEECCCCeeeEEEeCC------------eeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCC-------
Q 008393 397 IRYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT------- 454 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------- 454 (567)
|...|+++++.+..+... .....+..++. .++..+.+|.++++|.++++.+...+...
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~ 353 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence 788899999988776531 11122333333 34566678999999999998875432110
Q ss_pred ------------------------------C--CeeEEEEcCCCCEEEEEeCC-e-------------------------
Q 008393 455 ------------------------------K--PIDSVCWDPSGELLASVSED-S------------------------- 476 (567)
Q Consensus 455 ------------------------------~--~V~~l~~sp~g~~l~s~s~d-~------------------------- 476 (567)
+ .-...+++|+..+++....+ .
T Consensus 354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (571)
T d2ad6a1 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence 0 00125677777777665544 2
Q ss_pred ------------EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-cccCCe
Q 008393 477 ------------VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLI 542 (567)
Q Consensus 477 ------------I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V 542 (567)
|.-+|+.++ +.+........ ..+-.+...+..+++++.|+.++.+|.++++.+ .+. .....-
T Consensus 434 ~~~~~~~~~~G~l~AiD~~TG---~~~W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a 509 (571)
T d2ad6a1 434 GPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTC---CEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccCCcccCCcccEEEeccCCC---ceeeEcCCCCC-CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee
Confidence 334444444 22222221111 111112334667888999999999999999988 322 111122
Q ss_pred eEEEEecCCC-EEEE
Q 008393 543 AALAVSTETG-YVAS 556 (567)
Q Consensus 543 ~~l~~spdg~-~l~s 556 (567)
.-+.|..||+ ||++
T Consensus 510 ~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 510 SPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCEEEEETTEEEEEE
T ss_pred cceEEEECCEEEEEE
Confidence 2255666786 5544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.34 E-value=0.047 Score=55.60 Aligned_cols=185 Identities=9% Similarity=0.007 Sum_probs=105.4
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccC--------ccE-EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHS--------SLI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~--------~~V-~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
..|++++.++.|.-.|.++|+.+.++.... ..+ ..+++. +..|+.++.|+.+.-.|..++.........
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence 466677788999999999999988764211 001 112222 347888899999999999884443322211
Q ss_pred -CC------CcEEEEEEcCCCCeEEEEE------eCCCcEEEEECCCCeeeEEEeCC-----------------------
Q 008393 371 -HS------ASVMSLDFHPNKDDLICSC------DGDGEIRYWSINNGSCTRVFKGG----------------------- 414 (567)
Q Consensus 371 -h~------~~V~~l~~~p~~~~li~s~------~~dg~I~iwd~~~~~~~~~~~~~----------------------- 414 (567)
+. ..-..+.--..+..+++.+ +..+.|.-+|.++++.+..+...
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 10 1100011011123333332 23567899999999887765320
Q ss_pred ---------------------eeEEEEecCCCEEEEEEC------------------------CCeEEEEECCCCeEEEE
Q 008393 415 ---------------------TAQMRFQPHLGRYLAAAA------------------------ENVVSILDAETQACRLS 449 (567)
Q Consensus 415 ---------------------~~~~~~~~~~~~l~~~~~------------------------dg~I~i~d~~~~~~~~~ 449 (567)
-..+.+.+..+.++++.. ...|...|.++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 012567777787777652 23578889999998887
Q ss_pred ecC--CCCCe-------eEEEEc-CCCC---EEEEEeCC-eEEEEeCCCCC
Q 008393 450 LQG--HTKPI-------DSVCWD-PSGE---LLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 450 ~~~--h~~~V-------~~l~~s-p~g~---~l~s~s~d-~I~iwd~~~~~ 486 (567)
+.. |.-.. .-+.+. .+++ .++..+.+ .++++|-.+++
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence 754 22111 111111 2332 44455555 78888877763
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.27 E-value=0.061 Score=54.48 Aligned_cols=255 Identities=12% Similarity=0.142 Sum_probs=139.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-EEEEEECC--CCCeEEEEe------CCCcEEEEEcCCCCceeEEec
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP--SMPRLATSS------FDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp--~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~ 369 (567)
+..++.+..++.|...|..+++.+.....+... -..+.-.| ....++.+. ..|.|.-+|..++....+...
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 346777888999999999999988776532210 00000011 122344432 236799999998444333322
Q ss_pred cC-----------------------------CCcE-EEEEEcCCCCeEEEEEeC------------------CCcEEEEE
Q 008393 370 GH-----------------------------SASV-MSLDFHPNKDDLICSCDG------------------DGEIRYWS 401 (567)
Q Consensus 370 ~h-----------------------------~~~V-~~l~~~p~~~~li~s~~~------------------dg~I~iwd 401 (567)
.. ...+ ..+.+.+....+++..+. ...|.-.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 11 1111 124556665544432110 24577889
Q ss_pred CCCCeeeEEEeCC------------eeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCC-----------
Q 008393 402 INNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTK----------- 455 (567)
Q Consensus 402 ~~~~~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~----------- 455 (567)
+++++.+..+... ..-+.+..++. .++.+..+|.++++|..+++.+.....-..
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 9999987766421 11122333332 344566689999999999988765432110
Q ss_pred -------------------------CeeEEEEcCCCCEEEEEeCC-----------------------------------
Q 008393 456 -------------------------PIDSVCWDPSGELLASVSED----------------------------------- 475 (567)
Q Consensus 456 -------------------------~V~~l~~sp~g~~l~s~s~d----------------------------------- 475 (567)
.-...+++|+..+++....+
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 01135667777766655432
Q ss_pred --eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccC-CeeEEEEecCC
Q 008393 476 --SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTET 551 (567)
Q Consensus 476 --~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~-~V~~l~~spdg 551 (567)
.|.-||+.++ +.+....... ....-.+.-.+.++++++.||.++.||.++++.+ .+....+ .-.-+.|.-+|
T Consensus 437 ~G~l~A~D~~tG---k~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG 512 (560)
T d1kv9a2 437 SGALLAWDPVKQ---KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (560)
T ss_dssp EEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ccceEEEeCCCC---eEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 3455666665 3333333221 1112233445678888999999999999999988 3321111 11124555677
Q ss_pred C-EEEEE
Q 008393 552 G-YVASA 557 (567)
Q Consensus 552 ~-~l~s~ 557 (567)
+ ||+..
T Consensus 513 kqyv~v~ 519 (560)
T d1kv9a2 513 RQYVAIM 519 (560)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 55543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.05 E-value=0.13 Score=52.27 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=87.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC----ccEEE-EEECCCCCeEEEEeC------CCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~----~~V~~-i~fsp~~~~l~s~s~------dg~I~iwd~~~~~~~~~~ 367 (567)
+.+++.++.|+.|.-.|.++++.+..+.... ..++. ..+ -+..++++.. .|.|+-+|+.++....+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 3468888889999999999999988764211 11111 011 1334555542 488999999984443332
Q ss_pred eccC------------------------------------CCc-EEEEEEcCCCCeEEEEEeC----------------C
Q 008393 368 FMGH------------------------------------SAS-VMSLDFHPNKDDLICSCDG----------------D 394 (567)
Q Consensus 368 ~~~h------------------------------------~~~-V~~l~~~p~~~~li~s~~~----------------d 394 (567)
.... ... -..+.+.+..+.++ .+.. .
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy-~~tg~~~p~~~~~r~g~n~ys 277 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWT 277 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTS
T ss_pred eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeee-ccccccccccccccccccccc
Confidence 2110 011 12345566644333 3322 2
Q ss_pred CcEEEEECCCCeeeEEEeCC----------e--eEEEE-ecCCC---EEEEEECCCeEEEEECCCCeEEEEe
Q 008393 395 GEIRYWSINNGSCTRVFKGG----------T--AQMRF-QPHLG---RYLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~----------~--~~~~~-~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
..|...|+++++.+..+... . ..+.. ..++. .++....+|.++++|..+++.+...
T Consensus 278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence 35888999999988876531 1 11111 22332 3555667899999999999887543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.84 E-value=0.089 Score=49.39 Aligned_cols=185 Identities=17% Similarity=0.229 Sum_probs=115.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC------CCCCeEEEEeC--C--CcEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS------PSMPRLATSSF--D--KTVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs------p~~~~l~s~s~--d--g~I~iwd~~~~~~~~~~ 367 (567)
+..+++.....+-|++||++ |+.+..+. .+.++.|..- .....|++++. + .+|.+|.+......+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 44566666677779999985 77777765 3445555432 22223455542 2 35888888754444444
Q ss_pred eccC-------CCcEEEEEE--cCC-CCeEEEEEeCCCcEEEEECC---CC----eeeEEEe--CCeeEEEEecCCCEEE
Q 008393 368 FMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN---NG----SCTRVFK--GGTAQMRFQPHLGRYL 428 (567)
Q Consensus 368 ~~~h-------~~~V~~l~~--~p~-~~~li~s~~~dg~I~iwd~~---~~----~~~~~~~--~~~~~~~~~~~~~~l~ 428 (567)
+... ...|+.+|+ ++. +..+++....+|.+..|.+. .+ +.++.+. .....+.+....+.|+
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY 195 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence 4322 124667777 554 44456677889999888763 22 2344444 3567788999999999
Q ss_pred EEECCCeEEEEECCC-----CeEEEEecC--CCCCeeEEEEcC--CCC-EEEEEeCC--eEEEEeCCCC
Q 008393 429 AAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~-----~~~~~~~~~--h~~~V~~l~~sp--~g~-~l~s~s~d--~I~iwd~~~~ 485 (567)
++-++..|+.++.+- ...+....+ ....+..|++-. ++. ||++.+.+ +..|||....
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999988888887642 233333322 356778887654 333 66666554 8999998653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.83 E-value=0.25 Score=49.85 Aligned_cols=228 Identities=10% Similarity=0.090 Sum_probs=123.8
Q ss_pred eEEEEeCCCcEEEEeCCCCeeeeeeccc--Cc-cEEEEEECC--CCCeEEEEe------CCCcEEEEEcCCCCceeEEec
Q 008393 301 LLATGGHDKKAVLWHTDTLKSKTNLEEH--SS-LITDVRFSP--SMPRLATSS------FDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~~~~~~~~~l~~h--~~-~V~~i~fsp--~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~ 369 (567)
.++.++.|+.+.-.|.++|+.+...... .. .+. +.-.| -+..+++++ ..|.|+.+|..+++...+...
T Consensus 130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred cEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence 5666777888888898899887655421 11 110 00011 123445443 246799999998443333221
Q ss_pred cC------------------------------CCcE-EEEEEcCCCCeEEEEEe------------------CCCcEEEE
Q 008393 370 GH------------------------------SASV-MSLDFHPNKDDLICSCD------------------GDGEIRYW 400 (567)
Q Consensus 370 ~h------------------------------~~~V-~~l~~~p~~~~li~s~~------------------~dg~I~iw 400 (567)
.. ...+ ....+.+....+++..+ ....|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAl 288 (573)
T d1kb0a2 209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL 288 (573)
T ss_dssp SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEe
Confidence 10 0111 12455555443332111 11257777
Q ss_pred ECCCCeeeEEEeCC------------eeEEEEecCC---CEEEEEECCCeEEEEECCCCeEEEEecCCCC----------
Q 008393 401 SINNGSCTRVFKGG------------TAQMRFQPHL---GRYLAAAAENVVSILDAETQACRLSLQGHTK---------- 455 (567)
Q Consensus 401 d~~~~~~~~~~~~~------------~~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---------- 455 (567)
|+++++....+... ........++ ..++.+..+|.++++|..+++.+........
T Consensus 289 d~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~ 368 (573)
T d1kb0a2 289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG 368 (573)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred cccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccccc
Confidence 88888877665421 1112222232 2355566689999999999998765432110
Q ss_pred -------------------------CeeEEEEcCCCCEEEEEeCC-e---------------------------------
Q 008393 456 -------------------------PIDSVCWDPSGELLASVSED-S--------------------------------- 476 (567)
Q Consensus 456 -------------------------~V~~l~~sp~g~~l~s~s~d-~--------------------------------- 476 (567)
.-..++++|+..+++....+ .
T Consensus 369 ~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 448 (573)
T d1kb0a2 369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA 448 (573)
T ss_dssp CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred ceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccccc
Confidence 01234677877766665443 3
Q ss_pred ----------EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 477 ----------VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 477 ----------I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|.-||+.++ +.+....... +...-.+.-.+..|++++.|+.++.||.++++.+
T Consensus 449 ~p~~~~~~G~l~AiD~~tG---k~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 449 EPPKSKPFGRLLAWDPVAQ---KAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp SCCCSCCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCCCCcccEEEeCCCCC---ceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence 333444333 2222222211 1111123346778889999999999999999988
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.54 E-value=0.38 Score=46.39 Aligned_cols=221 Identities=7% Similarity=0.019 Sum_probs=116.5
Q ss_pred CccEEEEEECCCCCeEEEEe-CC----CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC----------
Q 008393 329 SSLITDVRFSPSMPRLATSS-FD----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG---------- 393 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s-~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~---------- 393 (567)
.-.+..++++|++++++.+- .+ ..|+++|+.++...-..+.. .....++|.+++..++++.-.
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 33455678899999887543 33 36999999984332223321 112468899999888876522
Q ss_pred -----CCcEEEEECCCCee--eEEEeC--C---eeEEEEecCCCEEEEEEC---CC--eEEEEECCCCe--------EEE
Q 008393 394 -----DGEIRYWSINNGSC--TRVFKG--G---TAQMRFQPHLGRYLAAAA---EN--VVSILDAETQA--------CRL 448 (567)
Q Consensus 394 -----dg~I~iwd~~~~~~--~~~~~~--~---~~~~~~~~~~~~l~~~~~---dg--~I~i~d~~~~~--------~~~ 448 (567)
...|..|.+.+... +..+.. . ...+..+.++..++.... .. .+.+.|+.... ...
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 281 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence 12588888877543 233332 1 234556788777765443 22 35555644321 112
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCC--e
Q 008393 449 SLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ--S 521 (567)
Q Consensus 449 ~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg--~ 521 (567)
.+......+.-+. +.++.+++....+ .|...++...........+..+...+..-.+...+.+|++.. .++ .
T Consensus 282 ~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~ 360 (430)
T d1qfma1 282 LIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (430)
T ss_dssp EECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred eecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence 2222222333222 2233333333322 466666665432222223333444455445555556666654 444 7
Q ss_pred EEEEECCCCcEEEec-cccCCeeEEEEecCCC
Q 008393 522 LELWNMSENKTMTLT-AHEGLIAALAVSTETG 552 (567)
Q Consensus 522 I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~ 552 (567)
|+++++.++....+. ...+.|..+...++..
T Consensus 361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence 899999988776432 2233454444444444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.50 E-value=0.34 Score=45.22 Aligned_cols=181 Identities=8% Similarity=0.052 Sum_probs=99.9
Q ss_pred EEEEECCCCCeEEEEeC------------CCcEEEEEcCCCCceeEEeccC-------CCcEEEEEE--cCCCCeEEEEE
Q 008393 333 TDVRFSPSMPRLATSSF------------DKTVRVWDADNPGYSLRTFMGH-------SASVMSLDF--HPNKDDLICSC 391 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~------------dg~I~iwd~~~~~~~~~~~~~h-------~~~V~~l~~--~p~~~~li~s~ 391 (567)
.+|...|+|..+++++. .|.|.++|+.+.......+... .-....|.+ ..++...|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 34566666655555432 4889999988644333322211 123345554 44565555554
Q ss_pred e---CCCcEEEEECCCCee--e--EEEeC----CeeEEEEecCCCEEEEEEC-----------------CCeEEEEECCC
Q 008393 392 D---GDGEIRYWSINNGSC--T--RVFKG----GTAQMRFQPHLGRYLAAAA-----------------ENVVSILDAET 443 (567)
Q Consensus 392 ~---~dg~I~iwd~~~~~~--~--~~~~~----~~~~~~~~~~~~~l~~~~~-----------------dg~I~i~d~~~ 443 (567)
. ....|.+|++..... . ..+.. ..+.+.+..++..+++-.. .+.|..||...
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 3 356788888754332 1 22222 3466777777655554211 12344455443
Q ss_pred CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 444 QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 444 ~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
.+. ... .-...+.|+++||+++|+.+... .|++|++...........+. -....-.+.+.+.+..+++++
T Consensus 198 ~~~--~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 198 VRV--VAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEE--EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred eEE--EcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence 332 222 23457899999999988777655 89999987543333333332 345566778876544455554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.35 E-value=0.15 Score=51.62 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=53.1
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce-EEEEEeCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF-HSCVFHPTY 510 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i-~~~~~sp~~ 510 (567)
.|.|.-+|+.+++.+.....+. ++..-.++..|.++++++.| .++.||.++| +.+.++....... .-+.|..+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETT
T ss_pred CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCC---cEeEEEECCCCccccCEEEEECC
Confidence 3688999999999998877543 22222233467788888888 9999999998 6666665433221 114666788
Q ss_pred C-eEEEE
Q 008393 511 P-SLLVI 516 (567)
Q Consensus 511 ~-~l~~~ 516 (567)
+ ||++.
T Consensus 541 ~qYv~i~ 547 (582)
T d1flga_ 541 EQYLGVT 547 (582)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 44443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.4 Score=45.22 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCC---------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~---------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...-++++....+|+.|+.++ ++|..+.. .......+..-..|..++|+.+ .|+... ++.+..++..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~-~~~l~~~~~~ 113 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVST-RNALYSLDLE 113 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEE-SSEEEEEESS
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEe-CCCEEEEEee
Confidence 345688888777888888775 55665321 1111111112235889999755 455544 4558888887
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--------EeCCeeEEEEecCCCEEEEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--------FKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~ 431 (567)
.- ............+..+.+.|. .++....++.+.++++..++.... ..+...+++|++.+..++++.
T Consensus 114 ~l-~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 114 EL-SEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp ST-TCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred cc-ccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 63 233333344567888888875 244567799999999998864432 223445555555544444442
Q ss_pred CCCeEEE-EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe
Q 008393 432 AENVVSI-LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 432 ~dg~I~i-~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 473 (567)
.+. ..+ -++.....+.........|.+|.|-.+..++++.+
T Consensus 190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 211 111 01110000000011234678899987777766553
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.44 Score=42.56 Aligned_cols=213 Identities=9% Similarity=-0.009 Sum_probs=96.4
Q ss_pred CcEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeC---------CCcEEEEEcCCCCceeEEecc---CCCc
Q 008393 309 KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF---------DKTVRVWDADNPGYSLRTFMG---HSAS 374 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~---h~~~ 374 (567)
..|.+||.++.+-... +......-..+.+ ++..++.|+. -..+.+||..+... ..+.. ....
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w--~~~~~~p~~r~~ 94 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW--SPCAPMSVPRNR 94 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE--EECCCCSSCCBT
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccc--cccccccceecc
Confidence 3578999988654332 3222222222222 4555565542 13577888775322 22111 0111
Q ss_pred EEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEEEeCC----eeEEEEecCCCEEEEEEC-----CCeEEEEE
Q 008393 375 VMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLAAAA-----ENVVSILD 440 (567)
Q Consensus 375 V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~-----dg~I~i~d 440 (567)
-.++.+ + ..+++.++.++ .+..+|..+.......... ...+... ....++.++. ...+..||
T Consensus 95 ~~~~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d 170 (288)
T d1zgka1 95 IGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYY 170 (288)
T ss_dssp CEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEE
T ss_pred eecccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEee
Confidence 112222 2 34554554433 3445666665443221111 1112222 2334444443 24678899
Q ss_pred CCCCeEEEEecCCC-CCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeec-CCCce-EEEEEeCCCC
Q 008393 441 AETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSC-NGNKF-HSCVFHPTYP 511 (567)
Q Consensus 441 ~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~-~~~~i-~~~~~sp~~~ 511 (567)
..+.+....-.... ....+++.. ++++++.++.+ .+.++|..+. ....+.. ..... .+++ ..+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~r~~~~~~-~~~~~ 244 (288)
T d1zgka1 171 PERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE----TWTFVAPMKHRRSALGIT-VHQGR 244 (288)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT----EEEECCCCSSCCBSCEEE-EETTE
T ss_pred ccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecce----eeecccCccCcccceEEE-EECCE
Confidence 88775443221111 112233333 34555555432 3677777553 1111111 11111 1222 23667
Q ss_pred eEEEEEcCC-----eEEEEECCCCcEEEe
Q 008393 512 SLLVIGCYQ-----SLELWNMSENKTMTL 535 (567)
Q Consensus 512 ~l~~~~~dg-----~I~iwd~~~~~~~~~ 535 (567)
.+++|+.++ .|.+||+.+++...+
T Consensus 245 l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 273 (288)
T d1zgka1 245 IYVLGGYDGHTFLDSVECYDPDTDTWSEV 273 (288)
T ss_dssp EEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred EEEEecCCCCeecceEEEEECCCCEEEEC
Confidence 777776553 589999998765533
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.90 E-value=1.5 Score=40.68 Aligned_cols=181 Identities=11% Similarity=0.203 Sum_probs=104.9
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeEEEe-CCeeEEEEe----cCCC--EEEEEEC-C---CeEEEEECCC-CeEEEEecC
Q 008393 385 DDLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQ----PHLG--RYLAAAA-E---NVVSILDAET-QACRLSLQG 452 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~----~~~~--~l~~~~~-d---g~I~i~d~~~-~~~~~~~~~ 452 (567)
..+|+....++-|++||+. |+.+..++ +....+..- -.+. .+++++. + ..|.+|.+.. ...+..+..
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred ccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 4566677778789999986 77776665 334433322 1222 2444443 2 3677776642 223333332
Q ss_pred C-------CCCeeEEEE--cC-CCCEEEEEe-CC-eEEEEeCCCCCC----CceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 453 H-------TKPIDSVCW--DP-SGELLASVS-ED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 453 h-------~~~V~~l~~--sp-~g~~l~s~s-~d-~I~iwd~~~~~~----~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
. ...+..+|+ ++ +|.+.+... .+ .+..|.+..... ...++.+. ....+..|++......|+++
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyis 197 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIA 197 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEe
Confidence 1 124667777 55 455544444 44 788887743222 23444444 35679999999999999999
Q ss_pred EcCCeEEEEECCCC-----cEEE-ec--cccCCeeEEEEec--CCC-EEEEEE-CCCcEEEcC
Q 008393 517 GCYQSLELWNMSEN-----KTMT-LT--AHEGLIAALAVST--ETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~-----~~~~-~~--~h~~~V~~l~~sp--dg~-~l~s~s-~Dg~I~iWd 567 (567)
-.+..|+.+++.-. ..+. .. ...+.+..|++-. ++. ||++.+ .|++..|||
T Consensus 198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd 260 (353)
T d1h6la_ 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE 260 (353)
T ss_dssp ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence 99888888876522 2221 11 2345677777642 332 555444 466777764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.44 E-value=1.9 Score=39.81 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=103.4
Q ss_pred EEEEcCCCCeEEEEeC------------CCcEEEEeCCCCeeee-ee--ccc-----CccEEEEEE--CCCCC-eEEEEe
Q 008393 292 CCHFSSDGKLLATGGH------------DKKAVLWHTDTLKSKT-NL--EEH-----SSLITDVRF--SPSMP-RLATSS 348 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~------------dg~I~vwd~~~~~~~~-~l--~~h-----~~~V~~i~f--sp~~~-~l~s~s 348 (567)
.|+..|||..+++++. .|.|.++|+.+.+... .+ .+. .-.-..+.+ ..++. +|++..
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn 118 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 118 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence 6788888877766542 4899999987643221 11 111 111233333 45666 455543
Q ss_pred ---CCCcEEEEEcCCCCceeE---Eec-cCCCcEEEEEEcCCCCeEEEEEeC---------------CCcEEEEECCCCe
Q 008393 349 ---FDKTVRVWDADNPGYSLR---TFM-GHSASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGS 406 (567)
Q Consensus 349 ---~dg~I~iwd~~~~~~~~~---~~~-~h~~~V~~l~~~p~~~~li~s~~~---------------dg~I~iwd~~~~~ 406 (567)
...+|.+|++......+. ++. .......++.+..++. +++|-.. -+...+|....++
T Consensus 119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 456799999875444332 222 2235578899888864 5556311 0223344433333
Q ss_pred eeEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCe---EEEEecCCCCCeeEEEEcC-CCCEEEEEeC
Q 008393 407 CTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDP-SGELLASVSE 474 (567)
Q Consensus 407 ~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~---~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~ 474 (567)
...... ...+.++++|+++.++++.. .+.|++|++.... ....+. -....-.|.+.+ +|.+.+.+..
T Consensus 198 ~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~~p 271 (340)
T d1v04a_ 198 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP 271 (340)
T ss_dssp EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEECC
Confidence 332222 45688999999988877776 6799999886542 222222 234566788876 5666655543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.17 E-value=1.4 Score=37.25 Aligned_cols=207 Identities=12% Similarity=0.081 Sum_probs=112.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE-CCCCCeEEEE------eCCCcEEEEEcCCCCceeEEeccC
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATS------SFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f-sp~~~~l~s~------s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
.++|+++...|.+.++-+..++.+.--+.. |..... .+.-.++..+ -.-..|.+-++..+++..+.-...
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLtkeP---I~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk 102 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLNREP---INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK 102 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECCSSC---CSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEEeccc---ccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence 347788888999999988777665443321 211110 0000112111 112335566665444433322222
Q ss_pred CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEE-------------EecCCCEEEEEEC-CCeEE
Q 008393 372 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-------------FQPHLGRYLAAAA-ENVVS 437 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~-dg~I~ 437 (567)
.-.|.++++. ++.++++|+....+.+|-++.++..+...-+..... +.+....++++.. .|.++
T Consensus 103 ~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 103 PMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp SBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred eEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence 2456666654 677888999999999999998876554332222211 1222122333333 44455
Q ss_pred EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeec--------CCCceEEEE
Q 008393 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSC--------NGNKFHSCV 505 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~--------~~~~i~~~~ 505 (567)
|++.. .+.++...+.++.+. +++-+. ...-+|+++++ ...+.. ....|.-+-
T Consensus 181 i~tpk-----------eGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~----yerve~P~kd~~sy~p~~I~~~~ 244 (313)
T d2hu7a1 181 VFDSG-----------EGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS----VEDLELPSKDFSSYRPTAITWLG 244 (313)
T ss_dssp EECCS-----------SEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC----EEECCCSSCHHHHHCCSEEEEEE
T ss_pred EecCC-----------CCcccceeEccCcee-eeccCCCCceEEEEEecccCc----eeeeecCcccceeecceEEEeee
Confidence 44443 445555666666555 444322 22345776542 222211 123455667
Q ss_pred EeCCCCeEEEEEcCCeEEEEE
Q 008393 506 FHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd 526 (567)
+.|+++.++++-.||.-.+|.
T Consensus 245 Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 245 YLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp ECTTSCEEEEEEETTEEEEEE
T ss_pred eCCCCcEEEEEecCCchheee
Confidence 999999989999999888886
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.04 E-value=1.8 Score=40.56 Aligned_cols=97 Identities=9% Similarity=0.084 Sum_probs=67.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe
Q 008393 456 PIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL 535 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~ 535 (567)
.|..++|+.+ .|+....+.+..++...... ......-..++..+.+.|. .+++...++.+.++++..++...+
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~---~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~ 160 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSE---FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL 160 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTC---EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeecccc---ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc
Confidence 5888999744 56666666888888866532 3333334556777777764 578888899999999998865422
Q ss_pred c------cccCCeeEEEEecCCCEEEEEEC
Q 008393 536 T------AHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 536 ~------~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
. .-.+.+.+++|++.|+.++++..
T Consensus 161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g 190 (381)
T d1xipa_ 161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRN 190 (381)
T ss_dssp EESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred cCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence 1 12356889999988888887743
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.72 E-value=2.4 Score=35.69 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=91.9
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEE-EecCCCEEEEEEC------CCeEEEEECCCCeEEEEecCCC-
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHT- 454 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~- 454 (567)
+++.+++.+...|.+.++-+..++.++.-+.++.... -.+.-+++..+-. -..|++.++...-....+....
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~ 103 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP 103 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce
Confidence 4566777888899999999888887766655544332 1222233322221 1244555554322222333222
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-------cCCCceEEEEE-eCCCCeEEEEEc-CCeEEE
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------CNGNKFHSCVF-HPTYPSLLVIGC-YQSLEL 524 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-------~~~~~i~~~~~-sp~~~~l~~~~~-dg~I~i 524 (567)
-.|.++++. +.+.+++|+.. .+.+|-++.++..+ +..+. .....|..+.+ .+....++++.- .|.++|
T Consensus 104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrk-L~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRE-LARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEE-EEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeec-CceEEEecccCCceEEEEEeCCceee-eccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 345566654 33444555544 77777776553211 11111 11223333322 222233444443 455555
Q ss_pred EECCCC---------------------------------cEEEec--c------ccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 525 WNMSEN---------------------------------KTMTLT--A------HEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 525 wd~~~~---------------------------------~~~~~~--~------h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
++-..+ +.-.+. . ..-.|+.+-+.|++++++.+-.||.=
T Consensus 182 ~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s 261 (313)
T d2hu7a1 182 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 261 (313)
T ss_dssp ECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred ecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCch
Confidence 544332 222111 1 12245566689999998888889877
Q ss_pred EEc
Q 008393 564 KLW 566 (567)
Q Consensus 564 ~iW 566 (567)
++|
T Consensus 262 ~lF 264 (313)
T d2hu7a1 262 AVF 264 (313)
T ss_dssp EEE
T ss_pred hee
Confidence 665
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.70 E-value=4.5 Score=38.69 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=37.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce-eEEec------cCCCcEEEEEEcCC
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFM------GHSASVMSLDFHPN 383 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~-~~~~~------~h~~~V~~l~~~p~ 383 (567)
..-++|+|.|++++|++--..|.|++++..+.... +..+. .-......|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45789999999988877656799999987763321 12111 12356789999985
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.87 E-value=5.6 Score=37.96 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=41.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ec------ccCccEEEEEECCC---CCeEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LE------EHSSLITDVRFSPS---MPRLAT 346 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~------~h~~~V~~i~fsp~---~~~l~s 346 (567)
-..-++|+|.|||++|++--..|.|++++..+++.... +. .-......|+|+|+ ..+|+.
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv 96 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence 34567999999999888775579999998877654322 21 12356789999985 335544
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=1.7 Score=38.43 Aligned_cols=161 Identities=11% Similarity=-0.041 Sum_probs=73.0
Q ss_pred CcEEEEECCCCeeeEEEeCC--e-eEEEEecCCCEEEEEECC-----CeEEEEECCCCeEEEEecCCCCC-eeEEEEcCC
Q 008393 395 GEIRYWSINNGSCTRVFKGG--T-AQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKP-IDSVCWDPS 465 (567)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~ 465 (567)
..+.+||..+.+....-... . ...+...++..++.++.+ ..+..+|..+............. -.++... +
T Consensus 70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~ 148 (288)
T d1zgka1 70 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-N 148 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T
T ss_pred chhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-e
Confidence 46788888877655432111 0 011112233333333322 34566777776543221111111 1122232 3
Q ss_pred CCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCC--CceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcE
Q 008393 466 GELLASVSED------SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKT 532 (567)
Q Consensus 466 g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~--~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~ 532 (567)
+.+++.|+.+ .+..||..+.. ........ ....+ ....++..++.++.+ ..+.+||..+.+.
T Consensus 149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 223 (288)
T d1zgka1 149 RLLYAVGGFDGTNRLNSAECYYPERNE----WRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 223 (288)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTE----EEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ecceEecCcccccccceEEEeeccccc----ccccccccccccccc-ccceeeeEEEecCccccccccceeeeeecceee
Confidence 4455555432 47788876531 11111111 11112 222234455555544 3678889888776
Q ss_pred EEeccccCC-e-eEEEEecCCCEEEEEECCCc
Q 008393 533 MTLTAHEGL-I-AALAVSTETGYVASASHDKF 562 (567)
Q Consensus 533 ~~~~~h~~~-V-~~l~~spdg~~l~s~s~Dg~ 562 (567)
..+.....+ . .+++. .++++++.|+.++.
T Consensus 224 ~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~ 254 (288)
T d1zgka1 224 TFVAPMKHRRSALGITV-HQGRIYVLGGYDGH 254 (288)
T ss_dssp EECCCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred ecccCccCcccceEEEE-ECCEEEEEecCCCC
Confidence 654322211 1 23333 36788888876543
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=88.18 E-value=4.5 Score=35.52 Aligned_cols=218 Identities=13% Similarity=0.025 Sum_probs=96.4
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.|..|+--.. +.+.-. ||.|..|-....-.+-.-......|..|.--.. ..++ -.|+.+..|.....+.....
T Consensus 27 ~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~a--l~dg~v~~wG~~~~gq~~~~- 99 (273)
T d1jtdb_ 27 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLA--LKDGEVIAWGGNEDGQTTVP- 99 (273)
T ss_dssp SEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEE--EETTEEEEEECCTTSTTCCC-
T ss_pred CcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCC-ceee--eeeeeeeccCCCcceeeccc-
Confidence 4555554222 222233 788888876543222211222334545543211 1222 24899999987543322111
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
......+..++.... ..+ .. .|+.+..|............ ..+..+. . +...++...++.++.|-.....
T Consensus 100 ~~~~~~~~~i~~~~~--~~~-~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~--~-~~~~~~~~~~g~~~~~G~~~~g 172 (273)
T d1jtdb_ 100 AEARSGVDAIAAGAW--ASY-AL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALD--G-GVYTALAVKNGGVIAWGDNYFG 172 (273)
T ss_dssp GGGGSSCCEEEEETT--EEE-EE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEE--E-CSSEEEEEETTEEEEEECCTTS
T ss_pred cccccceeEEeeecc--ccc-cc-ccccceecccCCCCceeeeccCCceEEEEe--c-cceeeeeecccceeEeecccCC
Confidence 111223444444322 222 22 48899999754432211111 1112221 1 2233444457788888654322
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
...........|..|+.... ..+.-.++.|+.|=........ .. ......|..|+-.... .++. .|+.|+.|
T Consensus 173 ~~~~~~~~~~~v~~Is~G~~--h~~~l~dG~v~~WG~n~~Gql~--~~-~~~~~~v~~I~~G~~~--~~~l-~~g~v~~W 244 (273)
T d1jtdb_ 173 QTTVPAEAQSGVDDVAGGIF--HSLALKDGKVIAWGDNRYKQTT--VP-TEALSGVSAIASGEWY--SLAL-KNGKVIAW 244 (273)
T ss_dssp TTSCCGGGSSSEEEEEECSS--EEEEEETTEEEEEECCTTSTTC--CC-GGGGSSCCEEEECSSC--EEEE-ETTEEEEE
T ss_pred cccccccccCCccceeccce--eeEEEecCcEEEcCCCCCCccC--CC-ccCCCCcEEEEeCcce--EEEE-ECCEEEEE
Confidence 11111123346777765433 2222333488888653321100 00 0111235555443332 2333 47999999
Q ss_pred ECC
Q 008393 526 NMS 528 (567)
Q Consensus 526 d~~ 528 (567)
-..
T Consensus 245 G~~ 247 (273)
T d1jtdb_ 245 GSS 247 (273)
T ss_dssp STT
T ss_pred CCC
Confidence 644
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=87.05 E-value=6.8 Score=34.26 Aligned_cols=216 Identities=13% Similarity=0.041 Sum_probs=99.4
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
...|..|+--. ...+... ||.|..|-....+.+- .-......|..+..- ..+.++ - .|+.+..|.....-..
T Consensus 25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG-~~~~~~~~v~~v~~G--~~~~~a-l-~dg~v~~wG~~~~gq~ 96 (273)
T d1jtdb_ 25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAG--NYHSLA-L-KDGEVIAWGGNEDGQT 96 (273)
T ss_dssp SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSCCCEEEEC--SSEEEE-E-ETTEEEEEECCTTSTT
T ss_pred CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCcee-eeecccccceEEecC--CCceee-e-eeeeeeccCCCcceee
Confidence 34577776532 2333334 8999999876543321 111123345555542 223332 2 3899999976542211
Q ss_pred EE---EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 008393 409 RV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 485 (567)
Q Consensus 409 ~~---~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~ 485 (567)
.. ....+..+.... ...+ +..|+.+..|.................|..++- ....++....+.++.|-....
T Consensus 97 ~~~~~~~~~~~~i~~~~--~~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~ 171 (273)
T d1jtdb_ 97 TVPAEARSGVDAIAAGA--WASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF 171 (273)
T ss_dssp CCCGGGGSSCCEEEEET--TEEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT
T ss_pred ccccccccceeEEeeec--cccc-ccccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccC
Confidence 10 111222222221 2222 234788888864432111111111233444432 223344444458888866433
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
.... ........|..++.... +.++.. ||.|+.|=....-.+ ........|..|+-.. ...++. .||.|.
T Consensus 172 g~~~---~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~-~~~~~l--~~g~v~ 242 (273)
T d1jtdb_ 172 GQTT---VPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-WYSLAL--KNGKVI 242 (273)
T ss_dssp STTS---CCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-SCEEEE--ETTEEE
T ss_pred Cccc---ccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCc-ceEEEE--ECCEEE
Confidence 2111 11112345665554332 333333 789999965432212 2222334577776532 223333 378888
Q ss_pred Ec
Q 008393 565 LW 566 (567)
Q Consensus 565 iW 566 (567)
.|
T Consensus 243 ~W 244 (273)
T d1jtdb_ 243 AW 244 (273)
T ss_dssp EE
T ss_pred EE
Confidence 88
|