Citrus Sinensis ID: 008400

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
Protein Sequence
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHERRQQGMTEV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccccccEEEEEcccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEEccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEcccEEEEccccEEEEEccccccHHHHHHHHccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHccccEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEEEcccccccHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEcHHHcEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEcccccEEEcccccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccccccEEccccccHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mdedfdipaanemdadmdlpddapmmkvgeekeignQGLKKKLVkegegwdtpengdevevhytgtlldgtqfdssrdrstpfkftlgqgnvikgWDIGIKTmkkgenavftippelaygesgspptippnatlqfDVELLSWTSVKDICKDGGIIKKILKegekwenpkdlDEVLVNYEARLEdgmvvgkadgveftvkdghfcPTLAKAVKTMKKGEKVLLAVkpqygfgekgksasgnegavppnaTLQIALELVSWKTVSEITDDKKVIKKILKegdgferpnegaVVKVKLIGklqdgtvfvkkgHSEEEqlfefktdeeQVIDGLDRAVITMKKNEVALLTIapeyafgsaesqqelavvppnstvHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKaleidpdnrdVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKsraqggraherrqqgmtev
Flexible Loop (DISEMBL)
mdedfdipaanemdadmdlpDDAPMMKVGeekeignqglkkKLVKEgegwdtpengdEVEVHYTGTLLDGTQFDSSRDRSTpfkftlgqgnvikGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIlkegekwenpkdlDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKtvseitddkkVIKKIlkegdgferpnegavVKVKLIGKLQDGTVFVKKGHSEEeqlfefktdeeqVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSfekekeswdmNTEEKIeaagkkkeqgntlfkagkyaraskrYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCtkvldldsrnVKALYRRAQAYIQMADLDLAEFDIKKaleidpdnrdvKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKsraqggraherrqqgmtev
Low Complexity Region (SEG)
MDEDFDIPAANEmdadmdlpddapmmKVGEEKEIGNQglkkklvkegegWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVkdickdggiikkilkegekWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTeekieaagkkkeQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHERRQQGMTEV
Disordered region (IsUnstruct)
**********************************************************VEVHYTGTLLDGT**********PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY***********NATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF*****************ATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA****ELAVVPPNSTVHYEVELVSF****************************FKAGKYARASKRYEKAVKYIEYDTSFGD****QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK****************Y***************************
Disordered Region (DISOPRED)
****FDI*************************EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG************VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ****VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS*******QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG**************************
Disordered Region (DISEMBL)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGE*********GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM********************
Disordered Region (DISPRO)
*****DIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGG*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDxxxxxxxxxxxxxxxxxxxxxEAKFYGNMFAKMKSRAQGGRAHERRQQGMTEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	567	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.962	0.990	0.823	0.0
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.948	0.930	0.792	0.0
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.961	0.974	0.793	0.0
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.671	0.830	0.374	4e-68
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.671	0.830	0.364	7e-68
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.671	0.831	0.362	2e-65
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.671	0.831	0.359	5e-65
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.671	0.831	0.369	4e-63
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.680	0.846	0.358	1e-62
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.675	0.838	0.353	2e-60

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/549 (82%), Positives = 499/549 (90%), Gaps = 3/549 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query: 539 FYGNMFAKM 547
           FYGNMFAK+
Sbjct: 540 FYGNMFAKL 548

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/540 (79%), Positives = 489/540 (90%), Gaps = 2/540 (0%)

Query: 16  DMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDS 75
           D D  D AP +K+GEE EIG  GLKKKLVKE E WDTPENGDEVEVHYTGTLLDGT+FDS
Sbjct: 25  DNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDS 84

Query: 76  SRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQ 135
           SRDR TPFKFTLGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQ
Sbjct: 85  SRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQ 144

Query: 136 FDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV 195
           FDVEL++W SVKDIC DGG+ KKI+ EGEKWE PKDLDEV V YEARLEDG +VGK+DGV
Sbjct: 145 FDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGV 204

Query: 196 EFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIA 254
           EFTVK+GHFCP L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI 
Sbjct: 205 EFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQID 264

Query: 255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSE 313
           LELVSWKTV E+TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E
Sbjct: 265 LELVSWKTVVEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEE 324

Query: 314 EEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVH 373
           +E+ FEFK DEEQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+
Sbjct: 325 DEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVY 384

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           YEVELVSF KEKESWDMNT+E+IEAAGKKKE+GN LFKAGKYARASKRYE+ VKYIEYD+
Sbjct: 385 YEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDS 444

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +F +EEKK++K LK+ACNLN+AACKLKLKDYK+A KL TKVL++DSRNVKA+YRRA AY+
Sbjct: 445 TFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYL 504

Query: 494 QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQG 553
           + ADLDLAE DIKKALEIDPDN++VK+EYK LKEK+KEYNKK+AKFY NM +KM    +G
Sbjct: 505 ETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEPHKG 564

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/551 (79%), Positives = 484/551 (87%), Gaps = 6/551 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPD----DAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           MD+DFDIPA ++M     + D    + P MKVGEE EIG QGLKKKL+KEGEGWDTPE G
Sbjct: 1   MDDDFDIPAGDDMMMGDGMGDFGGAEGPGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDG +FDSSRDR   FKF LGQG VIKGWD GIKTMKKGENA+FTIPPE
Sbjct: 61  DEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPE 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYGESGSPPTIP NATLQFDVELLSWTSV+DI KDGGI KKILKEG+KWENPKD DEV 
Sbjct: 121 LAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVF 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEARLEDG VV K++GVEFTVKDGH CP LAKAVKTMKKGEKVLLAVKPQYGFGE G+
Sbjct: 181 VKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGR 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            A+G  GAVPPNA+L I LELVSWKTV+EI DDKK++KK+LKE +G+ERPNEGAVV VK+
Sbjct: 241 PAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKI 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
            GKLQDGTVF+KKGH E+E  FEFKTDEE VI+GLDRAV+ MKK EVAL+TI PEYA+GS
Sbjct: 301 TGKLQDGTVFLKKGHDEQEP-FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
            ES+Q+ A+VPPNSTV YEVELVSF K+KESWD+N  EKIEAAG KKE+GN LFK+GKYA
Sbjct: 360 TESKQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYA 418

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476
           RASKRYEKA K+IEYDTSF ++EKKQ+K LK+ CNLNNAACKLKLKDYKQAEKLCTKVL+
Sbjct: 419 RASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVLE 478

Query: 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           LDSRNVKALYRRAQAY Q+ADL+LAE DIKKALEIDP+NRDVKL YKTLKEK+KE NKK+
Sbjct: 479 LDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEINKKD 538

Query: 537 AKFYGNMFAKM 547
           AKFY NMF+KM
Sbjct: 539 AKFYSNMFSKM 549

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  259 bits (662), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/406 (37%), Positives = 241/406 (59%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D  VF ++          F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKD-QVFDRRE-------LRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SF
Sbjct: 195 GESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSA--GKEKFQIPPNAELKYEIHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF DE+ +
Sbjct: 253 EKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAE 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    ++++++  +KE K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  258 bits (660), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 148/406 (36%), Positives = 239/406 (58%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               A+ TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SF
Sbjct: 195 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE +
Sbjct: 253 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D +LA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P+N+  K +    +++++    +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  250 bits (639), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/406 (36%), Positives = 232/406 (57%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     A+G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----AAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVRLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++ EK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +  AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    +++ +    +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  249 bits (635), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 231/406 (56%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E     D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+D+   +I++I   G+G+ RPN+GA+V+V L G   D           +++   F+  E
Sbjct: 143 TEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK K SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +  AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    +++ +    +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  243 bits (619), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 239/406 (58%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGELCRITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           TDD+   +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLF--------DQRELRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E ++L + P YAFG+A   +E   +PP + + YEV L SF
Sbjct: 195 GESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNA--GKEKFQIPPYAELKYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    ++++++   +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 225/405 (55%), Gaps = 19/405 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+  L DG     +        F++  G    
Sbjct: 29  KDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TMKKGE   L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----SAGHLQKIPSNATLFFEIELLDFKG-EDL 142

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  VI++I ++G+G+  PNEGA VKV L G     T   +      + +F     E+ 
Sbjct: 143 FEDSGVIRRIKRKGEGYSNPNEGATVKVHLEGCCGGRTFDCR------DVVFVVGEGEDH 196

Query: 327 VID-GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
            I  G+D+A++ M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK K
Sbjct: 197 DIPIGIDKALVKMQREEQCILYLGPRYGFG--EAGKPKFGIDPNAELMYEVTLKSFEKAK 254

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           ESW+M+T+EK+  A   KE+G   FK GKY +A  +Y K V ++E +    ++E K +++
Sbjct: 255 ESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWLEMEYGLSEKESKASES 314

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M D + A+ D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYNKAVECCDKALGLDSANEKGLYRRGEAQLLMNDFESAKGDF 374

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550
           +K L ++P NR  +L+    + K KE+N+++ + Y NMF K   R
Sbjct: 375 EKVLAVNPQNRAARLQISMCQRKAKEHNERDRRVYANMFKKFAER 419

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 228/402 (56%), Gaps = 19/402 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y  +L +G     +    +   F++  G    
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TMKKGE   L  KP+Y +G     A+G+   +P NATL   +EL+++K   ++
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLNFKG-EDL 142

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++  + G+G+  PNEGA V++ L G+   G VF  +     +  F     E+ 
Sbjct: 143 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDH 196

Query: 327 VID-GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
            I  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK K
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAK 254

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           ESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K +++
Sbjct: 255 ESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 314

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A+ D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K 
Sbjct: 375 EKVLEVNPQNKAARLQIVVCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.964	0.957	0.870	0.0
224065421	575	predicted protein [Populus trichocarpa]	0.962	0.949	0.862	0.0
255589766	574	peptidylprolyl isomerase, putative [Rici	0.964	0.952	0.859	0.0
255587695	583	peptidylprolyl isomerase, putative [Rici	0.964	0.938	0.859	0.0
355329948	573	FK506-binding protein [Nicotiana tabacum	0.962	0.952	0.852	0.0
356527318	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.950	0.990	0.829	0.0
449463204	553	PREDICTED: peptidyl-prolyl cis-trans iso	0.966	0.990	0.839	0.0
356567794	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.950	0.990	0.820	0.0
297831424	551	peptidylprolyl isomerase [Arabidopsis ly	0.961	0.989	0.829	0.0
9294180	555	peptidylprolyl isomerase; FK506-binding	0.962	0.983	0.823	0.0

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/547 (87%), Positives = 512/547 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA EM+ DMDLPD++P++KVGEEKEIG QGLKKKLVKEGEGWDTPENGDEVE
Sbjct: 1   MDEDFDIPAAEEMNDDMDLPDESPILKVGEEKEIGKQGLKKKLVKEGEGWDTPENGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGS  TIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKDLDEV V YE
Sbjct: 121 ESGSSTTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDLDEVFVKYE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           ARLEDG +V K+DGVEFTVK+ +FCP L+KAVKTMKKGEKV+L VKPQYGFGEKGK ASG
Sbjct: 181 ARLEDGTLVAKSDGVEFTVKEDYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPASG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            EGAVPPNATL+I LELVSWKTV+E+TDDKKVIKKILKEG+G+ERPNEGAVVK+KLIGKL
Sbjct: 241 EEGAVPPNATLEITLELVSWKTVTEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E LFEFKTD+EQVIDGLDRAV+TMKK EVALLTI  +YAFGS+ES 
Sbjct: 301 QDGTVFLKKGHGEGEDLFEFKTDDEQVIDGLDRAVMTMKKGEVALLTIHSDYAFGSSESS 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV+YEVEL SF K+KESWDMNTEEKIEAAGKKKE+GN LFKAGKYARASK
Sbjct: 361 QELAVVPPNSTVYYEVELESFVKDKESWDMNTEEKIEAAGKKKEEGNVLFKAGKYARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKA KYIEYD+SFG+EEKKQAK LKV CNLNNAACKLKLKDYK+AEKLCTKVLD+ S+
Sbjct: 421 RYEKAAKYIEYDSSFGEEEKKQAKTLKVTCNLNNAACKLKLKDYKEAEKLCTKVLDIQSK 480

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAYI +ADLDLAEFDIKKALEIDPDNRDVKLEY+TLKEKMKEYNKKEAKFY
Sbjct: 481 NVKALYRRAQAYIHLADLDLAEFDIKKALEIDPDNRDVKLEYRTLKEKMKEYNKKEAKFY 540

Query: 541 GNMFAKM 547
           GNMFA+M
Sbjct: 541 GNMFARM 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/551 (86%), Positives = 516/551 (93%), Gaps = 5/551 (0%)

Query: 1   MDEDFDIPAANEMDAD----MDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           M+EDF++P  +EM  +    +DLPD+ PM+KVGEEKEIGNQGLKKKL+KEGEGWDTP+NG
Sbjct: 1   MEEDFELPTGDEMMMNNGDQLDLPDEGPMLKVGEEKEIGNQGLKKKLLKEGEGWDTPDNG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKKGENA+FTIP +
Sbjct: 61  DEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKGENALFTIPAD 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYG SGSPPTIPPNATLQFDVELLSW+S+KDICKDGGI KKIL EGEKWENPKDLDEVL
Sbjct: 121 LAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVEGEKWENPKDLDEVL 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEA+LEDG V+ ++DGVEFTVKDGHFCP LA+AVKTMK GEKVLL VKPQYGFGEKGK
Sbjct: 181 VRYEAQLEDGSVIARSDGVEFTVKDGHFCPALARAVKTMKMGEKVLLTVKPQYGFGEKGK 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            ASG+E AVPPNA +QI LELV+WKTV+E+TDDKKVIKKILKEGDG++RPNEGAVVKVKL
Sbjct: 241 PASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDGYDRPNEGAVVKVKL 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
           IGKLQDGTVF KKG  + E LFEFKTDEEQVIDGLDRAV TMKK E+ALLTIAPEYAFGS
Sbjct: 301 IGKLQDGTVFFKKGQDDSE-LFEFKTDEEQVIDGLDRAVSTMKKGELALLTIAPEYAFGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
           +ESQQELAVVPPNSTV YE+ELVSF+KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYA
Sbjct: 360 SESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIEAAGKKKEEGNVLFKAGKYA 419

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476
           +ASKRYEKAVKYIEYD+SF +EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL+
Sbjct: 420 KASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLE 479

Query: 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           L+SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEIDPDNRDVKLE+KTLKEKMKEYNKKE
Sbjct: 480 LESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNRDVKLEHKTLKEKMKEYNKKE 539

Query: 537 AKFYGNMFAKM 547
           AKFYGNMFAKM
Sbjct: 540 AKFYGNMFAKM 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/549 (85%), Positives = 517/549 (94%), Gaps = 2/549 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKVLDL+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEI+PDNRDVKLEY+TLK+KM+E NKKEAK
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRDVKLEYRTLKDKMRELNKKEAK 540

Query: 539 FYGNMFAKM 547
           FYGNMFAKM
Sbjct: 541 FYGNMFAKM 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587695|ref|XP_002534361.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223525436|gb|EEF28026.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/549 (85%), Positives = 517/549 (94%), Gaps = 2/549 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKVLDL+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEI+PDNRDVKLEY+TLK+KM+E NKKEAK
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRDVKLEYRTLKDKMRELNKKEAK 540

Query: 539 FYGNMFAKM 547
           FYGNMFAKM
Sbjct: 541 FYGNMFAKM 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/549 (85%), Positives = 508/549 (92%), Gaps = 3/549 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP A  MD DMDLPDD P+MKVGEEKEIGNQGLKKKLVKEGEGW+TPE GDEVE
Sbjct: 1   MEEDFDIPPAEGMDEDMDLPDD-PIMKVGEEKEIGNQGLKKKLVKEGEGWETPEAGDEVE 59

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR  PFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 60  VHYTGTLLDGTKFDSSRDRGDPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 119

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSW SVKDICKDGGI KKIL EGEKWENPKD DEVLV YE
Sbjct: 120 ESGSPPTIPPNATLQFDVELLSWVSVKDICKDGGIFKKILAEGEKWENPKDFDEVLVKYE 179

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A LE+G VVGK+DGVEFTV+DG+FCP LAKAVKTMKKGEKV L VKPQYGFGEKGK AS 
Sbjct: 180 ALLENGTVVGKSDGVEFTVQDGYFCPALAKAVKTMKKGEKVQLTVKPQYGFGEKGKPASS 239

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           + GAVP NATLQI LELVSWK VS +TDDKKV+KKILKEG+G+E+PNEGAVVK+KLIGKL
Sbjct: 240 DGGAVPSNATLQINLELVSWKIVSSVTDDKKVVKKILKEGEGYEKPNEGAVVKLKLIGKL 299

Query: 301 QDGTVFVKKGHS--EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           QDGTVF+KKGH    E++LFEFKTDEEQVIDGLDRAV+TMKK EVALLTIAPEYAFGS+E
Sbjct: 300 QDGTVFIKKGHDGENEDELFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+Q+LAV+PPNSTVHYEVELVSF K+KESWDMNT EKIEAAGKKKE+GN LFKAGKY RA
Sbjct: 360 SKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYTRA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKA K+IEYDTSF +EEKKQ+KALK++CNLNNAACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY+ MADLDLAEFDIKKALEIDP+NRDVKLEYK LK+K+KE+NKK+AK
Sbjct: 480 STNVKALYRRAQAYMNMADLDLAEFDIKKALEIDPNNRDVKLEYKALKDKVKEFNKKDAK 539

Query: 539 FYGNMFAKM 547
           FYGNMFAK+
Sbjct: 540 FYGNMFAKL 548

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527318|ref|XP_003532258.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/547 (82%), Positives = 501/547 (91%), Gaps = 8/547 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        KVGEE+EIG++GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------KVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G +V K+DGVEFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDG  F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAPEYAFGS+ESQ
Sbjct: 293 QDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKAGK+ARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKVLDL+S 
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLEST 472

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAY+Q+ DLDLAE DIKKALEIDP+NRDVKLEY+TLKEK+K  N+KEA+FY
Sbjct: 473 NVKALYRRAQAYMQLTDLDLAELDIKKALEIDPNNRDVKLEYRTLKEKVKANNRKEAQFY 532

Query: 541 GNMFAKM 547
           GNM  KM
Sbjct: 533 GNMINKM 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463204|ref|XP_004149324.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus] gi|449515125|ref|XP_004164600.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus]

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/548 (83%), Positives = 511/548 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA +M  D+DLPD    +KVGEEKEIGNQGLKKKL+KEGEGW TPE+GDEVE
Sbjct: 1   MDEDFDIPAAPDMPDDLDLPDQTVPLKVGEEKEIGNQGLKKKLLKEGEGWVTPESGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKK E A+FTIPP+LAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPP+ATLQFDVELLSWTSVKDICKDGGI KKIL EG+KWENPKDLDEVLVN+E
Sbjct: 121 ESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG ++ KADGVEFTV DG+FCP LAKAVKTMK GEK LL VKPQYGFGEKGKSA G
Sbjct: 181 AKLEDGTLIAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSARG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           NEGAVPPNA+L I LELVSWKTVSE+T DKKVIKKILKEG+G+E+PN+GA+VKVKLIGKL
Sbjct: 241 NEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
            DG +F++KGH + E+ +EFKTDEEQVIDGLD+AV+TMKK E+ALLTIAPEYAFGS+ESQ
Sbjct: 301 GDGKIFLRKGHEDGEEPYEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQ 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           Q+LAVVPPNSTV+YEVELV+F+KEKESWDMN +EKIEAAGKKKE+GN LFK+GK+ARASK
Sbjct: 361 QDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKLKLK Y +AEKLCTKVL+L+S 
Sbjct: 421 RYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESS 480

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAYIQ+ADLDLAEFDIKKAL+IDP+NRDVKLEYKTLKEK+KEYNKK+AKFY
Sbjct: 481 NVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFY 540

Query: 541 GNMFAKMK 548
           GNMFAKMK
Sbjct: 541 GNMFAKMK 548

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567794|ref|XP_003552100.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/547 (82%), Positives = 500/547 (91%), Gaps = 8/547 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        +VGEE+EIG+ GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------EVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EGEKWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G ++ K+DG EFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGT F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAP+YAFG++ESQ
Sbjct: 293 QDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKA KYARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKVLDL+S 
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLEST 472

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQA++Q+ +LDLAE DIKKAL+IDP+NRDVKLEY+TLKEK+KE N+KEA+FY
Sbjct: 473 NVKALYRRAQAHMQLTNLDLAELDIKKALDIDPNNRDVKLEYRTLKEKVKENNRKEAQFY 532

Query: 541 GNMFAKM 547
           GNM  KM
Sbjct: 533 GNMINKM 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831424|ref|XP_002883594.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata] gi|297329434|gb|EFH59853.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/547 (82%), Positives = 500/547 (91%), Gaps = 2/547 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MD DF++P   + D +MD  D A  +KVGEEKEI  QGLKKKLVKEGEG++TPENGDEVE
Sbjct: 1   MDNDFEMPPVGD-DDEMDFGDAASFLKVGEEKEI-QQGLKKKLVKEGEGYETPENGDEVE 58

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELAYG
Sbjct: 59  VHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPSELAYG 118

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           E+GSPPTIP NATLQFDVELL+W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV +E
Sbjct: 119 ETGSPPTIPANATLQFDVELLTWVSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFE 178

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK AS 
Sbjct: 179 AKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASA 238

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            +GAVPPNATL+I LELVSWKTVSE+TDD KV+KKILKEG+G+ERPNEGA VKVKLIGKL
Sbjct: 239 GDGAVPPNATLEINLELVSWKTVSEVTDDNKVMKKILKEGEGYERPNEGAAVKVKLIGKL 298

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS ESQ
Sbjct: 299 QDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQ 358

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV YEV+L++F+KE+ESWDM+TEEKIEAA KKKE+GN+ FKAGKYA ASK
Sbjct: 359 QELAVVPPNSTVTYEVDLLTFDKERESWDMSTEEKIEAASKKKEEGNSKFKAGKYALASK 418

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+S 
Sbjct: 419 RYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELEST 478

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAY++MADLDLAEFD+KKALEIDP+NR+VKLE + LKEKMKE+NKKEAKFY
Sbjct: 479 NVKALYRRAQAYMEMADLDLAEFDVKKALEIDPNNREVKLEQRRLKEKMKEFNKKEAKFY 538

Query: 541 GNMFAKM 547
           GNMFAK+
Sbjct: 539 GNMFAKL 545

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294180|dbj|BAB02082.1| peptidylprolyl isomerase; FK506-binding protein [Arabidopsis thaliana]

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/549 (82%), Positives = 499/549 (90%), Gaps = 3/549 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query: 539 FYGNMFAKM 547
           FYGNMFAK+
Sbjct: 540 FYGNMFAKL 548

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.984	0.992	0.736	5.6e-219
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.929	0.911	0.735	1.5e-211
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.932	0.912	0.741	1.9e-211
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.918	0.890	0.718	1.1e-204
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.929	0.772	0.656	4.1e-191
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.622	0.620	0.457	6.3e-89
UNIPROTKB|Q657L6	422	P0468H06.14-3 "Peptidyl-prolyl	0.564	0.758	0.457	3.3e-70
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.652	0.837	0.368	7.6e-64
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.652	0.797	0.368	7.6e-64
UNIPROTKB|F1MU79	459	FKBP4 "Peptidyl-prolyl cis-tra	0.663	0.819	0.355	3.1e-60

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 2115 (749.6 bits), Expect = 5.6e-219, P = 5.6e-219
 Identities = 414/562 (73%), Positives = 458/562 (81%)

Query:     1 MDEDFDIPAAN--EXXXXXXXXXXXXXXKVGEEKEIGNQXXXXXXXXXXXXWDTPENGDE 58
             MD +F++P                    KVGEEKEI  Q            ++TPENGDE
Sbjct:     1 MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query:    59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
             VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct:    60 VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query:   119 YGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPKDLDEVLVN 178
             YGESGSPPTIP NATLQFDVELL W SV                   WENPKDLDEVLV 
Sbjct:   120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query:   179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
             +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct:   180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query:   239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
             S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct:   240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query:   299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
             KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct:   300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query:   359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARA 418
             SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNT            +GN+ FK GKY+ A
Sbjct:   360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query:   419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
             SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct:   420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query:   479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
             S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct:   480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query:   539 FYGNMFAKMKS-RAQGGRAHER 559
             FYGNMFAK++  +   G  H R
Sbjct:   540 FYGNMFAKLRIIKRWRGNEHLR 561

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 2045 (724.9 bits), Expect = 1.5e-211, P = 1.5e-211
 Identities = 389/529 (73%), Positives = 445/529 (84%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             K+GEE EIG              WDTPENGDEVEVHYTGTLLDGT+FDSSRDR TPFKFT
Sbjct:    36 KIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFT 95

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++W SV
Sbjct:    96 LGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSV 155

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WE PKDLDEV V YEARLEDG +VGK+DGVEFTVK+GHFCP
Sbjct:   156 KDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCP 215

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIALELVSWKTVSE 265
              L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI LELVSWKTV E
Sbjct:   216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275

Query:   266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSEEEQLFEFKTDE 324
             +TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E+E+ FEFK DE
Sbjct:   276 VTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDE 335

Query:   325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
             EQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+YEVELVSF KE
Sbjct:   336 EQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKE 395

Query:   385 KESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
             KESWDMNT            +GN LFKAGKYARASKRYE+ VKYIEYD++F +EEKK++K
Sbjct:   396 KESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSK 455

Query:   445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
              LK+ACNLN+AACKLKLKDYK+A KL TKVL++DSRNVKA+YRRA AY++ ADLDLAE D
Sbjct:   456 DLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELD 515

Query:   505 IKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQG 553
             IKKALEIDPDN++VK+EYK LKEK+KEYNKK+AKFY NM +KM    +G
Sbjct:   516 IKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEPHKG 564

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
 Identities = 394/531 (74%), Positives = 435/531 (81%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            W+TPE GDEVEVHYTGTLLDG +FDSSRDR TPFKF 
Sbjct:    35 KVGEEKEIGKQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFKFK 94

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENAVFTIPP+LAYGESGSPPTIP +ATLQFDVELLSWTSV
Sbjct:    95 LGQGQVIKGWDLGIKTMKKGENAVFTIPPDLAYGESGSPPTIPASATLQFDVELLSWTSV 154

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEV V YEARLEDG V+ K++G EFTVKDG FCP
Sbjct:   155 KDICQDGGIFKKILKEGEKWENPKDLDEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCP 214

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              LAKAVKTMKK EKVLL VKPQYGFGE G+ A+G EGAVPPNATL + LELVSWKTV+EI
Sbjct:   215 ALAKAVKTMKKAEKVLLTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEI 274

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDKK++KK+L EG G+ERPNEGAVVKVK+ GKLQDGT+F KKGH E E  FEFKTDEE+
Sbjct:   275 GDDKKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEP-FEFKTDEEE 333

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VIDG+DRAV+ MK  EVAL+TI PEYAFGS ES+Q+LAVVPPNSTV YEVELVSF K+KE
Sbjct:   334 VIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKE 393

Query:   387 SWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
             SWD+N             +GN LFK GKY RASKRYEKA K+IEYD+SF ++EKKQ+K L
Sbjct:   394 SWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
             KV CNLNNAACKLKLKDYKQAEKLCTKVL+LDS+NVKALYRRAQAY+Q+ADL+LAE DIK
Sbjct:   454 KVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIK 513

Query:   507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM-KSRAQGGRA 556
             KALEIDPDNRDVKL YK LKEK+KEYNKK+AKFY NMFAKM K  A+ G+A
Sbjct:   514 KALEIDPDNRDVKLTYKNLKEKVKEYNKKDAKFYSNMFAKMTKQPAEDGKA 564

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1980 (702.1 bits), Expect = 1.1e-204, P = 1.1e-204
 Identities = 376/523 (71%), Positives = 433/523 (82%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            WD PE+GDEV+VHYTGTLLDGT+FDSSRDR TPFKF+
Sbjct:    39 KVGEEKEIGKQGLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFS 98

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD GIKTMKKGE AVFT+PPELAYGE+GSPP IPPNATL+FDVELLSW SV
Sbjct:    99 LGQGEVIKGWDEGIKTMKKGEQAVFTVPPELAYGEAGSPPAIPPNATLRFDVELLSWASV 158

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEVLV YEARLEDG VV K+DGVEF VKDG+FCP
Sbjct:   159 KDICKDGGIFKKVLAEGHKWENPKDLDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCP 218

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              L+KAVKTMKKGEKVLL VKPQYGFGE+GK ASG E AVPPNATL + LEL+SWKTV+ I
Sbjct:   219 ALSKAVKTMKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLI 278

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDK+++KK+LKEG+G+ERPN+GAVV+V+ IGKL+DGTVF KKGH  +E  FEF+TDEEQ
Sbjct:   279 GDDKRILKKVLKEGEGYERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEP-FEFRTDEEQ 337

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VI+GLDR V+TMKK EVAL+ + P++AFGS E++Q+LAVVP NSTV YEVELVSFEKEKE
Sbjct:   338 VIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE 397

Query:   387 SWDM-NTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWD+ +             +GN  FK GKYA+ASKRYEKA KYIEYD+SF D+EKKQ+KA
Sbjct:   398 SWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKA 457

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             LKV+C LNNAACKLKLK+Y++AEKLCTKVL+L+S NVKALYRR QAYI++ADL+LAE D+
Sbjct:   458 LKVSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDV 517

Query:   506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK 548
             KKALEIDPDNRDVK+ YKTLKEK+KEYNK++AKFYGNMFAK +
Sbjct:   518 KKALEIDPDNRDVKMVYKTLKEKIKEYNKRDAKFYGNMFAKWR 560

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1852 (657.0 bits), Expect = 4.1e-191, P = 4.1e-191
 Identities = 350/533 (65%), Positives = 420/533 (78%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             +VGEEKEIG +            W+ P+ GDEV+VHYTGTLLDGT+FDSSRDR  PFKFT
Sbjct:    84 EVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAPFKFT 143

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENA+FTIPPELAYGE GSPP IPPNATLQFDVEL+SW SV
Sbjct:   144 LGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISWESV 203

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENP+D DEV V YE RLEDG VV ++DGVEFTVKDGHFCP
Sbjct:   204 KDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCP 263

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              ++KAVKTMKK EK LL VKPQYGFGE+G+ A+ +E A+PPNATL I LELVSWK V+EI
Sbjct:   264 AISKAVKTMKKNEKALLTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEI 323

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              +DKK++KKIL EG+G+ERP++  +V+VKLIGKL+DGT+FV +GH  +E  FEFKTDE+Q
Sbjct:   324 GNDKKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEP-FEFKTDEDQ 382

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             V++GLD+AV++MKK EVAL+TI PEYAFGS E++Q+L+VVPPNSTV+YEVELVSF+KEKE
Sbjct:   383 VVEGLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKE 442

Query:   387 SWDMN-TXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWDM               +GN  FK  KYARASKRY KA+ +I+YD+SF +EEK+ +K 
Sbjct:   443 SWDMKENTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKP 502

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             LKV+C LNNAACKLKLKDYK+A++LCT+VL+LDS NVKA YRRAQA++ + D DLAE DI
Sbjct:   503 LKVSCKLNNAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDI 562

Query:   506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK----SRAQGG 554
             KKALEIDPDNRDVK+ Y+ LKEK+KE  +KE K YGNM +K+     S  +GG
Sbjct:   563 KKALEIDPDNRDVKMGYRRLKEKVKEQKRKETKLYGNMISKLSKLEDSETEGG 615

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 737 (264.5 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
 Identities = 168/367 (45%), Positives = 219/367 (59%)

Query:   192 ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATL 251
             A+ V FTV +G   P +  AVKTMK+GE+V L VKP+YGFG  G S  G    VPP A L
Sbjct:   171 AEAVTFTVSEGLLVPAVRVAVKTMKRGERVQLKVKPEYGFGAAGSSEYG----VPPGADL 226

Query:   252 QIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGK-LQDGTVFVKK 309
             +I L L+ W  V    ++  V+KK L E D  + RPNEGA V +++ GK L DG VF+K 
Sbjct:   227 EIELTLLGWNNVEYCNNENTVVKKTLVECDNEYRRPNEGASVTLRVTGKVLPDGPVFMKH 286

Query:   310 GHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAE---SQQELAV 365
             G   E     F T+EEQV +GL+ AV+ MKK E A++T+  P Y +G      S +   V
Sbjct:   287 GEGSE---LRFVTEEEQVPEGLELAVMKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSEV 343

Query:   366 -VPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEK 424
              VP  S + +EV+LV F   KE+W+M+             +GN  FK+GK ARA   +++
Sbjct:   344 EVPAGSRLQFEVDLVDFTNAKETWEMSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDR 403

Query:   425 AVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484
             AV  + YD SF DE K   K +K +C LN AA  LK   +K A K CT VLD+D  +VKA
Sbjct:   404 AVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAALDLKRAHWKDAVKHCTSVLDIDPTSVKA 463

Query:   485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544
             LYRRAQA++ MAD   AE D+K+ALE++PD+ DV    + LK   +E NKKEAK Y  MF
Sbjct:   464 LYRRAQAHMGMADFFEAEQDVKRALELEPDSADVLALQRRLKAAQREQNKKEAKLYSKMF 523

Query:   545 AKMKSRA 551
             A  K  A
Sbjct:   524 AAPKVAA 530

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q657L6 P0468H06.14-3 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 151/330 (45%), Positives = 216/330 (65%)

Query:    58 EVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
             EV+VH+TG L+DGTQF SSR+   P +F LGQ +V+ G+++ + +M+ GE A+FTIP  L
Sbjct:    75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134

Query:   118 AYGESGSP---PT-IPPNATLQFDVELLS-WTSVXXXXXXXXXXXXXXXXXXXWENPKDL 172
                ++GSP   P+ IPPN TL+F++EL++ +T +                    +     
Sbjct:   135 TMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194

Query:   173 DEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG 232
             D V V Y+A L DG  V K++GVEF++ DG FCP  A AV TMK+GE+ +L VKP+Y FG
Sbjct:   195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254

Query:   233 EKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEG-AV 291
             E+G+ + G E AVPP+ATL + L  V W  +  I +D+ + KK L+ G+      +  AV
Sbjct:   255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312

Query:   292 VKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351
             VKV+L+GKLQDGTVF ++G+ ++E  FEF  DE QVIDGLD +V+TM++ EVA  TI P+
Sbjct:   313 VKVRLLGKLQDGTVFDRRGYGDDEP-FEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371

Query:   352 YAFGSAESQQ-ELAVVPPNSTVHYEVELVS 380
             +AF +  S Q + A VP N+TV Y++EL+S
Sbjct:   372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 144/391 (36%), Positives = 232/391 (59%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KLK+Y QA + C K L+LDS N K L+RR +A++ + D +LA  D +K +++ P N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550
             ++  T ++K++E ++KE K Y NMF ++  +
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRLADK 414

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 144/391 (36%), Positives = 232/391 (59%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KLK+Y QA + C K L+LDS N K L+RR +A++ + D +LA  D +K +++ P N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550
             ++  T ++K++E ++KE K Y NMF ++  +
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRLADK 414

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|F1MU79 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" [Bos taurus (taxid:9913)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 141/397 (35%), Positives = 225/397 (56%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E P   D V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    45 ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIKAWDIAVATMKVGEVCH 104

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++T+++   +I++I   G
Sbjct:   105 ITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIRTRG 158

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMK 339
             +G+ +PNEGA+V+V L G  +D  VF ++     E  FE    E   +  GL++A+  M+
Sbjct:   159 EGYAKPNEGALVEVALEGYFKD-QVFDRR-----ELRFEVGEGESMDLPCGLEKAIQRME 212

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SFEK KESW+M++       
Sbjct:   213 KGEHSIVYLKPRYAFGSAG--KEKFQIPPNAELKYEIHLKSFEKAKESWEMSSEEKLEQS 270

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY +A  +Y+K V ++EY++SF DE+ ++A+AL++A +LN A C L
Sbjct:   271 TIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLASHLNLAMCHL 330

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KL+ +  A + C K L+LDS N K L+RR +A++ + D DLA  D +K L++ P N+  K
Sbjct:   331 KLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAK 390

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRA 556
              +    ++++++  +KE K Y NMF ++       +A
Sbjct:   391 AQLVVCQQRIRKQLEKEKKLYANMFERLAEEETKAKA 427

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJL3	FKB65_ARATH	5, ., 2, ., 1, ., 8	0.7925	0.9488	0.9307	no	no
Q43207	FKB70_WHEAT	5, ., 2, ., 1, ., 8	0.7931	0.9611	0.9749	N/A	no
Q38931	FKB62_ARATH	5, ., 2, ., 1, ., 8	0.8233	0.9629	0.9909	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011129001 SubName- Full=Chromosome undetermined scaffold_2180, whole genome shotgun sequence; (571 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	567
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-41
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	7e-40
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-23
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	4e-23
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	1e-22
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-16
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-14
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-10
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	5e-09
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	1e-08
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	3e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	2e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	4e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	6e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-05
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-04
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	6e-04
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.002
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.003
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	0.004
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  144 bits (366), Expect = 1e-41
 Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 49  GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN 108
           G +  + GD V VHYTG L DGT FDSS+DR  PF+FTLG G VI GWD G+  MK GE 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 109 AVFTIPPELAYGESGS-PPTIPPNATLQFDVELL 141
              TIPPELAYGE G     IPPNATL F+VELL
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score =  143 bits (363), Expect = 7e-40
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++K G+G   P+ GD V VHYTGTL+DGT FDSS DR  P +F LG   VI GWD
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGG--VIPGWD 158

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPPELAYGE G P  IPPN+TL F+VELL 
Sbjct: 159 EGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343
           E+  +G  V V   GKL+DGTVF         + FEF     QVI G D  ++ MK  E 
Sbjct: 3   EKAKKGDTVTVHYTGKLEDGTVFDSSKD--RGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             LTI PE A+G         V+PPN+T+ +EVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAG--GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 98.7 bits (246), Expect = 4e-23
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  K+ KEG G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 147 GLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 203

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G  P IP N+TL FDVELL 
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ +++ +GEG   P   D V VHYTG L+DGT FDSS  R  P +F +    VI GW 
Sbjct: 103 GLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWI 159

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             +  M  G     TIP ELAYGE G+  +IPP +TL F+VELL
Sbjct: 160 EALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
              GN  +K G Y  A + YEKA++           +   A A       N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALEL----------DPDNADAY-----YNLAAAYYKLG 48

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
            Y++A +   K L+LD  N KA Y    AY ++   + A    +KALE+DP+
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 165 KWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEK 220
             E  K  D V V+Y  +LEDG V      +    EFT+  G   P   + +  MK GEK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             L + P+  +GE+G       G +PPNATL   +EL+
Sbjct: 61  RKLTIPPELAYGEEGL----AGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 44/114 (38%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQV 327
            +  K+LK GDG   P +G  V V   G L DGTVF     +G     Q  EF      V
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRG-----QPAEFPLG--GV 153

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
           I G D  +  MK      LTI PE A+G    +    V+PPNST+ +EVEL+  
Sbjct: 154 IPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E GD V +HYT  + DG   D++ +   P  F +G G +I G +  +   + GE     I
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEI 63

Query: 114 PPELAYGE 121
           PPE A+GE
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 27/80 (33%), Positives = 38/80 (47%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
                KL DY +A +   K L+LD  N  A Y  A AY ++   + A  D +KALE+DPD
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66

Query: 515 NRDVKLEYKTLKEKMKEYNK 534
           N            K+ +Y +
Sbjct: 67  NAKAYYNLGLAYYKLGKYEE 86

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM-ADLD 499
             A+ALK     N      KL DY +A +   K L+LD  N +A Y  A AY+++  D +
Sbjct: 1   DNAEALK-----NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE 55

Query: 500 LAEFDIKKALEIDP 513
            A  D++KALE+DP
Sbjct: 56  EALEDLEKALELDP 69

Length = 69

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 153 GGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHFCPTLAK 210
            G+  K+LK G+    PK  D V V+Y   L DG V       G       G   P   +
Sbjct: 101 SGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGGVIPGWDE 159

Query: 211 AVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            ++ MK G K  L + P+  +GE+G       G +PPN+TL   +EL+ 
Sbjct: 160 GLQGMKVGGKRKLTIPPELAYGERGVP-----GVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
           TPE GD V   Y    LDG    S  +   P  + + Q ++  G   G+K MK+GE A F
Sbjct: 85  TPEFGDLVTFEYDIRALDGDVIYSEEELG-PQTYKVDQQDLFSGLRDGLKLMKEGETATF 143

Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             P   AYG  G    I PN  +   V LL+
Sbjct: 144 LFPSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           EQ   ++          RY++A+K  +   ++     +    L        AAC   LK+
Sbjct: 15  EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL--------AACCQMLKE 66

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y++A         LD  + +  +  A+  + + + + A   +  A+EI  +N     EY 
Sbjct: 67  YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP----EYS 122

Query: 524 TLKEK---MKEY 532
            LKE+   M E 
Sbjct: 123 ELKERAEAMLES 134

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 30/174 (17%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           ++ EE+ + A K KE+GN  ++   + +A K Y KA++       +              
Sbjct: 118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS------------- 164

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
              N AAC   L D+++  +  T  L+LD    KAL RRA AY  +     A  D+  A 
Sbjct: 165 ---NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL-TAS 220

Query: 510 EIDPDNRDV-----------KLEYKTLKEKM--KEYNKKEAKFYGNMFAKMKSR 550
            I    R+            K      KE +  K  N     F GN     + +
Sbjct: 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E+ +E   +  E    L   G    A  RYE+A++ +E       +  K          L
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLE-------KALKLNPDDDAEALL 206

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N     LKL  Y++A +   K L+LD  N +ALY  A   +++   + A   ++KALE+D
Sbjct: 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266

Query: 513 PD-NRDVKLEYKTLKEKMKEYNK 534
           PD           L E ++   K
Sbjct: 267 PDLYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 16/83 (19%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + A   K  GN LFK G Y  A + YEKA++           +   A+A       N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----------DPDNAEAY-----YNLAL 45

Query: 457 CKLKL-KDYKQAEKLCTKVLDLD 478
             LKL KDY++A +   K L+LD
Sbjct: 46  AYLKLGKDYEEALEDLEKALELD 68

Length = 69

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DG+  +S+R+   P  F LG G++ +G +  +  +K G+   F++
Sbjct: 6   QSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSL 65

Query: 114 PPELAYGESGSPPTI 128
            PE A+G   SP  I
Sbjct: 66  EPEAAFGVP-SPDLI 79

Length = 156

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            KALY    AY+++   D A    +KALE++P+N
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +ALY    AY+++ D D A    +KALE+DP+N
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           L+  DY +A       L       +AL    +A ++   L  A   ++ AL  DPD+
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
           D V ++Y  ++EDG VV   D     + F V  G   P L +A+   + GE+  + + P+
Sbjct: 7   DVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66

Query: 229 YGFGE 233
             FGE
Sbjct: 67  DAFGE 71

Length = 174

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.8 bits (104), Expect = 6e-05
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 1/161 (0%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
            L+              E +E   +  E       AG     +    K  +  E      
Sbjct: 24  ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA-QAYIQM 495
              + +         LN       L  Y++A +L  K L LD     A    A  A  ++
Sbjct: 84  KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            D + A    +KALE+DP+  ++      L   ++   + E
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L + G Y  A +  EKA++        G++  + A+AL      N A   L L DY 
Sbjct: 12  ALVLRRLGDYDEALELLEKALELAR---ELGEDHPETARAL-----NNLARLYLALGDYD 63

Query: 466 QAEKLCTKVLDLDSR 480
           +A +   K L L   
Sbjct: 64  EALEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.5 bits (103), Expect = 8e-05
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK  A     +    L   G        YE+A++  E       E  + A+AL     L 
Sbjct: 119 EKALALDPDPDLAEALLALGALYEL-GDYEEALELYEKALELDPELNELAEAL-----LA 172

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
             A    L  Y++A +L  K L L+   + +AL      Y+++   + A    +KALE+D
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232

Query: 513 PDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           PDN +       L  ++  Y +     
Sbjct: 233 PDNAEALYNLALLLLELGRYEEALEAL 259

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
              G ++E    L KA       +  E A+   +Y    G       KAL +     +AA
Sbjct: 544 LRTGNEEEAVAWLEKA--AELNPQEIEPALALAQYYLGKGQ----LKKALAILNEAADAA 597

Query: 457 CK------------LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                         L   D  +A     K+L L   +  AL   A AY  M +   A   
Sbjct: 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657

Query: 505 IKKALEIDPDNRDVKL 520
           +K+ALE+ PDN + ++
Sbjct: 658 LKRALELKPDNTEAQI 673

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +A Y   Q Y+Q+ D + A+   +KALE+DP+N
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 32/230 (13%)

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV-------PPNSTVHYE 375
             ++    +D  +     N  ALL    +        +  LA         P N  V   
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232

Query: 376 VELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTL-----FKAGKYARASKRYEKAVK--- 427
           +  +  E  +        + +          + L     F+   Y  A +  + A+K   
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292

Query: 428 ------YIEYDTSFGDEEKKQA-----KALKVACNLNN-----AACKLKLKDYKQAEKLC 471
                  +   + +     +QA     + LK A N +      A+ +L+L    +A    
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           +  L LD  +  AL    +AY+ + D + A   + KA E+DP+N   + +
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G VV +    K++DG V       E      F     Q+I GL+ A++  +  E   +
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTD--ENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV 61

Query: 347 TIAPEYAFG 355
            I PE AFG
Sbjct: 62  EIPPEDAFG 70

Length = 174

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +ALY    AY ++ D + A    +KALE+DP+N
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 452 LNN-AACKLKLKDYKQAEKLCTKVLDL-------DSRNVKALYRRAQAYIQMADLDLAEF 503
           LNN A    +L DY +A +L  K L+L            +AL   A+ Y+ + D D A  
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67

Query: 504 DIKKALEIDPD 514
            ++KAL +   
Sbjct: 68  YLEKALALREA 78

Length = 78

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKA 211
           G++ K+ KEG   E PKD D V+VNY+  L DG     +   G   + +     P   + 
Sbjct: 147 GLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEG 205

Query: 212 VKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +K +KKG K+ L + P+  +G+ G         +P N+TL   +EL+  K
Sbjct: 206 LKNIKKGGKIKLVIPPELAYGKAGVP------GIPANSTLVFDVELLDVK 249

Length = 269

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  ++L +GE    P   D V V+Y  +L DG V    V + +  EF V      P 
Sbjct: 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPG 157

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             +A+  M  G K  L +  +  +GE+G  AS     +PP +TL   +EL+
Sbjct: 158 WIEALTLMPVGSKWELTIPHELAYGERGAGAS-----IPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++L +G+G   P     V+V   GKL DGTVF   V +G     +  EF  +   VI G 
Sbjct: 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARG-----EPAEFPVN--GVIPGW 158

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             A+  M       LTI  E A+G   +    A +PP ST+ +EVEL+
Sbjct: 159 IEALTLMPVGSKWELTIPHELAYGERGAG---ASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
           +AL      Y ++ D D A    +KALE+DPDN D          K+ +Y +
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEE 52

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L + GKY +A +++E+A++   Y           A++L      N   C LK  D+ 
Sbjct: 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQ--------PARSL-----ENAGLCALKAGDFD 152

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +AEK  T+ L +D +  ++L   A+ Y 
Sbjct: 153 KAEKYLTRALQIDPQRPESLLELAELYY 180

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G YA A K   KA+                    K       A   L    ++
Sbjct: 63  GKIYLALGDYAAAEKELRKAL---------------SLGYPKNQVLPLLARAYLLQGKFQ 107

Query: 466 QAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
           Q          LD      L   R  AY+ +  L+LA+   ++AL IDP +   KL
Sbjct: 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL 163

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
             AL   A+A + + DLD A   +++AL +DPD+ +  L  
Sbjct: 1   PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLL 41

Length = 44

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 35/77 (45%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           DY QA+K   K L+ D     A   RA  Y ++ + DLA+   +KAL + P+N DV   Y
Sbjct: 50  DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109

Query: 523 KTLKEKMKEYNKKEAKF 539
                      +   +F
Sbjct: 110 GAFLCAQGRPEEAMQQF 126

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	567
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.92
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.88
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.87
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.87
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.84
KOG0553	304	consensus TPR repeat-containing protein [General f	99.83
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.83
KOG4234	271	consensus TPR repeat-containing protein [General f	99.82
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.79
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.75
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.74
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.73
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.71
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.68
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.65
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.61
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.56
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.48
PRK15359	144	type III secretion system chaperone protein SscB;	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.38
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.36
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.34
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.32
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.32
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.28
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.24
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.23
PRK11189	296	lipoprotein NlpI; Provisional	99.17
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.17
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.15
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.08
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.01
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.0
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.99
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.97
KOG4555	175	consensus TPR repeat-containing protein [Function	98.97
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.97
PRK15331	165	chaperone protein SicA; Provisional	98.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.95
KOG1126	638	consensus DNA-binding cell division cycle control	98.93
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.92
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.92
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.91
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.9
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.9
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.89
KOG0553	304	consensus TPR repeat-containing protein [General f	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.86
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.85
PRK12370	553	invasion protein regulator; Provisional	98.83
PRK15359	144	type III secretion system chaperone protein SscB;	98.82
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.81
PRK12370	553	invasion protein regulator; Provisional	98.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.79
PRK10803	263	tol-pal system protein YbgF; Provisional	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.77
PRK01490	435	tig trigger factor; Provisional	98.77
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.77
PRK11189	296	lipoprotein NlpI; Provisional	98.77
KOG1126	638	consensus DNA-binding cell division cycle control	98.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.72
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.72
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.71
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.71
PF13512	142	TPR_18: Tetratricopeptide repeat	98.7
KOG1125	579	consensus TPR repeat-containing protein [General f	98.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.67
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.65
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.64
KOG2076	895	consensus RNA polymerase III transcription factor	98.63
PLN02789	320	farnesyltranstransferase	98.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.6
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.56
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.54
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.53
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.53
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.52
PLN02789	320	farnesyltranstransferase	98.51
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.47
KOG1310	758	consensus WD40 repeat protein [General function pr	98.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.46
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.44
KOG2003	840	consensus TPR repeat-containing protein [General f	98.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.41
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.38
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.36
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.34
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.3
PRK14574	822	hmsH outer membrane protein; Provisional	98.28
KOG1129	478	consensus TPR repeat-containing protein [General f	98.28
PF13371	73	TPR_9: Tetratricopeptide repeat	98.26
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.25
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.25
KOG1125	579	consensus TPR repeat-containing protein [General f	98.24
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.2
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.17
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.13
PF12688	120	TPR_5: Tetratrico peptide repeat	98.13
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.12
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.11
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.1
PRK14574	822	hmsH outer membrane protein; Provisional	98.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.06
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.05
PRK01490	435	tig trigger factor; Provisional	98.05
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.04
PRK10803	263	tol-pal system protein YbgF; Provisional	98.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.02
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.0
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.0
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.98
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.96
PF13431	34	TPR_17: Tetratricopeptide repeat	97.95
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.94
KOG2076	895	consensus RNA polymerase III transcription factor	97.93
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.93
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.93
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.92
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.91
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.89
KOG4234	271	consensus TPR repeat-containing protein [General f	97.88
PF13428	44	TPR_14: Tetratricopeptide repeat	97.88
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.8
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.8
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.8
KOG1129	478	consensus TPR repeat-containing protein [General f	97.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.77
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.74
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.73
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.69
PRK11906	458	transcriptional regulator; Provisional	97.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.68
KOG2003	840	consensus TPR repeat-containing protein [General f	97.68
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.66
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.64
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.64
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.62
PF13428	44	TPR_14: Tetratricopeptide repeat	97.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.56
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.54
PF13512	142	TPR_18: Tetratricopeptide repeat	97.54
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.53
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.48
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.46
KOG1586	288	consensus Protein required for fusion of vesicles	97.46
PRK15331	165	chaperone protein SicA; Provisional	97.44
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.43
KOG4555	175	consensus TPR repeat-containing protein [Function	97.43
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.43
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.43
PRK10941	269	hypothetical protein; Provisional	97.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.41
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.41
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.41
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.35
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.32
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.31
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.26
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.26
PRK11906	458	transcriptional regulator; Provisional	97.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.2
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.18
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.18
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.13
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.06
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.03
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.03
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.02
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.99
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.95
KOG3364	149	consensus Membrane protein involved in organellar	96.94
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.88
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.87
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.85
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.83
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.79
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.77
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.75
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.68
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.63
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.54
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.53
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.51
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.32
KOG1585	308	consensus Protein required for fusion of vesicles	96.3
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.21
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.18
KOG1586	288	consensus Protein required for fusion of vesicles	96.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.09
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.07
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.06
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.05
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.04
KOG2471	696	consensus TPR repeat-containing protein [General f	95.96
PF13431	34	TPR_17: Tetratricopeptide repeat	95.96
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.95
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	95.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.84
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.8
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.64
PRK04841	903	transcriptional regulator MalT; Provisional	95.56
COG2912	269	Uncharacterized conserved protein [Function unknow	95.52
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.49
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.48
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.41
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.4
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.27
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.25
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.04
KOG1585	308	consensus Protein required for fusion of vesicles	95.03
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.98
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.9
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.86
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.86
COG3947	361	Response regulator containing CheY-like receiver a	94.85
PRK04841	903	transcriptional regulator MalT; Provisional	94.77
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.74
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.21
PLN03218	1060	maturation of RBCL 1; Provisional	94.12
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.04
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.0
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.86
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	93.85
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.71
PLN03218	1060	maturation of RBCL 1; Provisional	93.63
PLN03077	857	Protein ECB2; Provisional	93.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.57
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.45
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.39
KOG2471	696	consensus TPR repeat-containing protein [General f	93.39
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.16
KOG3364	149	consensus Membrane protein involved in organellar	93.12
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.9
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.69
PLN03077	857	Protein ECB2; Provisional	92.66
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.54
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	92.17
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.0
PRK10941	269	hypothetical protein; Provisional	91.83
KOG2300	629	consensus Uncharacterized conserved protein [Funct	91.72
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.69
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.61
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.37
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.13
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.1
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.95
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.88
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.59
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.3
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.0
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.49
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.48
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.42
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.05
KOG2422	665	consensus Uncharacterized conserved protein [Funct	88.44
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.29
KOG2610	491	consensus Uncharacterized conserved protein [Funct	88.29
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.91
KOG1550	552	consensus Extracellular protein SEL-1 and related	87.83
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.8
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	87.38
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.44
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.43
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	86.38
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.31
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.97
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	85.5
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.48
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	85.21
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.04
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	84.99
COG3898	531	Uncharacterized membrane-bound protein [Function u	84.95
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	84.81
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.58
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.54
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	84.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.2
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	84.14
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	83.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	83.58
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.93
KOG1310	758	consensus WD40 repeat protein [General function pr	82.92
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	82.92
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.62
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	82.04
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.0
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.4
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	81.35
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.25
PHA02537	230	M terminase endonuclease subunit; Provisional	81.22
cd02656	75	MIT MIT: domain contained within Microtubule Inter	80.67
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	80.45
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	80.23

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-65  Score=496.32  Aligned_cols=357  Identities=50%  Similarity=0.808  Sum_probs=334.7

Q ss_pred             ccccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCC
Q 008400          162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA  238 (567)
Q Consensus       162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~  238 (567)
                      +|+|+++|..|+.|.+||++.+.||+.|+++   +|+.|.+|.|.++.||..++.+|+.              |+.+.| 
T Consensus         2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p-   66 (397)
T KOG0543|consen    2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP-   66 (397)
T ss_pred             CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC-
Confidence            6889999999999999999999999999988   5899999999999999999999998              455543 


Q ss_pred             CCCCCCCCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCCC-CCCCCCCCEEEEEEEEEecCCcEEEeccCCCCccc
Q 008400          239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL  317 (567)
Q Consensus       239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g-~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~  317 (567)
                          +.||++++|.|+|+|.          |++|+|+|+++|.| ..+|..|..|+|||.|.+.|+ +|+++..     .
T Consensus        67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-----~  126 (397)
T KOG0543|consen   67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-----R  126 (397)
T ss_pred             ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----c
Confidence                6799999999999998          89999999999999 689999999999999999988 7776543     3


Q ss_pred             EEEEcCc-cchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee-ecccccCCChHHH
Q 008400          318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK  395 (567)
Q Consensus       318 ~~~~lg~-~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~-~~~~~~~~~~~e~  395 (567)
                      |.|.+|+ ..+|.||++||++|++||++.|+|+|+|+||+.+..  ++.|||++++.|+|+|++|. +....|.+..+++
T Consensus       127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~  204 (397)
T KOG0543|consen  127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER  204 (397)
T ss_pred             eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence            8888898 589999999999999999999999999999954433  47899999999999999999 8899999999999


Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      +..|...+++||.+|+.|+|..|+..|.+|+.++.+.....+++......++..||+|+|+||+|+++|..|+..|+++|
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGR  555 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~  555 (567)
                      +++|+|+|||||+|+||+.+++|+.|+.+|++|++++|+|++++.+|..|+++.++++++++++|++||+++....+...
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~  364 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTK  364 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987765543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-36  Score=297.49  Aligned_cols=351  Identities=36%  Similarity=0.542  Sum_probs=270.3

Q ss_pred             EcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCC
Q 008400           45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS  124 (567)
Q Consensus        45 ~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~  124 (567)
                      ++|+|+..|..||.|.+||++++.||+.||+|.+ +.|+.|.+|.+.+|.||..++..|+.              |+.+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~   65 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS   65 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence            4799999999999999999999999999999998 79999999999999999999999998              78888


Q ss_pred             CCCCCCCCcEEEEEEEEEEeeccccccccceeeeeeecccc-ccCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEecC-
Q 008400          125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD-  201 (567)
Q Consensus       125 ~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~-  201 (567)
                      |+.+|++.++.|+|+|+          |+.++++|+.+|.| ...|..+..|.+||.+.+.++ +|+++ ..+.|..|. 
T Consensus        66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~  134 (397)
T KOG0543|consen   66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED  134 (397)
T ss_pred             CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence            99999999999999997          89999999999998 999999999999999999888 66666 556788888 


Q ss_pred             CCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCC
Q 008400          202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD  281 (567)
Q Consensus       202 ~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~  281 (567)
                      ..++.||+.+|..|++||++.|+|+|+++||+.+..    .+.|||+++|.|+|+|++|....+.+              
T Consensus       135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s--------------  196 (397)
T KOG0543|consen  135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES--------------  196 (397)
T ss_pred             cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence            479999999999999999999999999999955443    57899999999999999997422211              


Q ss_pred             CCCCCCCCCEEEEEEEEE-ecCCcEEEeccCCCCcccEEEEcCccc-hhhHHHHHHhccCCCcEEEEEEcCCCccCCccc
Q 008400          282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (567)
Q Consensus       282 g~~~p~~~~~v~v~y~~~-l~~g~~~~~~~~~~~~~~~~~~lg~~~-vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~  359 (567)
                          -..++..++....+ .+.|+.+             |.-|+.. -+.-.++|+.          .+..+..+...  
T Consensus       197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~----------~l~~~~~~~~e--  247 (397)
T KOG0543|consen  197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVS----------FLEYRRSFDEE--  247 (397)
T ss_pred             ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHH----------HhhccccCCHH--
Confidence                01111111111100 1123222             2222211 1112333332          22211111000  


Q ss_pred             cccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHH
Q 008400          360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE  439 (567)
Q Consensus       360 ~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~  439 (567)
                                                    -.....-.....+.+.+.++.+.++|..|+...+++|.+.+.+..     
T Consensus       248 ------------------------------e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-----  292 (397)
T KOG0543|consen  248 ------------------------------EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-----  292 (397)
T ss_pred             ------------------------------HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-----
Confidence                                          000111223456778899999999999999999999998876553     


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 008400          440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDP  513 (567)
Q Consensus       440 ~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~P  513 (567)
                                +++.+|.|++.+++|+.|+.++++|++++|.|-.+...+..+.....++.+. .+.|.+.+..-+
T Consensus       293 ----------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  293 ----------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             ----------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                      4899999999999999999999999999999988888888888777776655 677777776544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-35  Score=265.18  Aligned_cols=276  Identities=26%  Similarity=0.364  Sum_probs=238.4

Q ss_pred             cCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecC--CcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEE
Q 008400          268 DDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~-~~p~~~~~v~v~y~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~  344 (567)
                      .-.++.|+||..|.|. ..-..|++|++||.+...+  ++++|+++.  .++|+++++|...-.+.||.+|.+|+++|++
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            3457899999999984 3355699999999997764  578998885  7999999999999999999999999999999


Q ss_pred             EEEEcCC----CccCCcccc-------cc-----------------------ccCCCCCccEEEEEEEEEeee----ccc
Q 008400          345 LLTIAPE----YAFGSAESQ-------QE-----------------------LAVVPPNSTVHYEVELVSFEK----EKE  386 (567)
Q Consensus       345 ~v~i~~~----~~yg~~~~~-------~~-----------------------~~~ip~~~~l~f~ieL~~~~~----~~~  386 (567)
                      .|+|+..    |.|-+...+       +.                       .......++|.|.++|+.+..    ..+
T Consensus        86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e  165 (329)
T KOG0545|consen   86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE  165 (329)
T ss_pred             HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence            9988743    333322110       00                       000123468999999998864    467


Q ss_pred             ccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC---CCChHHHHHHHHHHHHHHhhHHHHHHhccC
Q 008400          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (567)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~e~~~~~~~~~~~~~~nla~~~~k~~~  463 (567)
                      .|.|+.++|++....++++||.+|+.|+|.+|...|..|+-.+.+..   ...+.++.++......+++|+++|+++.++
T Consensus       166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e  245 (329)
T KOG0545|consen  166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE  245 (329)
T ss_pred             cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence            89999999999999999999999999999999999999998877643   234578889999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGN  542 (567)
Q Consensus       464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~-~~~~~l~~~~~~~~~~~~~e~~~~~~  542 (567)
                      |.++++.|+.+|..+|.|+||||+||+|+....+..+|.++|.++|+++|.-. .+..+++.+..++.+.++.++..|++
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k  325 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK  325 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999964 68889999999999999999999999


Q ss_pred             hhH
Q 008400          543 MFA  545 (567)
Q Consensus       543 ~f~  545 (567)
                      ||+
T Consensus       326 mfs  328 (329)
T KOG0545|consen  326 MFS  328 (329)
T ss_pred             hcC
Confidence            996

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.2e-28  Score=211.52  Aligned_cols=169  Identities=32%  Similarity=0.474  Sum_probs=138.5

Q ss_pred             EEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeec---cccccccceeeeeee
Q 008400           85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV---KDICKDGGIIKKILK  161 (567)
Q Consensus        85 ~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~---~~~~~d~~~~~~i~~  161 (567)
                      |.+|.+.+|+|.+.++.||+.|+++++++||+++||..+..    .-..+++.+.++.....   ........+...+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~   76 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK   76 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence            35788899999999999999999999999999999965542    12345666666554332   222233444444443


Q ss_pred             c-cccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008400          162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK  236 (567)
Q Consensus       162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~  236 (567)
                      . .....+.+.||.|.+||++.+.||++||+|    +|+.|++|.+++++||+++|.+|++||++++.|||++|||++|.
T Consensus        77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~  156 (188)
T KOG0549|consen   77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA  156 (188)
T ss_pred             CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence            3 336678889999999999999999999998    79999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCeEEEEEEeecccc
Q 008400          237 SASGNEGAVPPNATLQIALELVSWKT  262 (567)
Q Consensus       237 ~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (567)
                      +     +.||++++|+|+|+|+....
T Consensus       157 ~-----~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  157 P-----PKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             C-----CCCCCCeeEEEEEEEEEeec
Confidence            5     56999999999999998754

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.1e-27  Score=206.52  Aligned_cols=176  Identities=28%  Similarity=0.468  Sum_probs=143.7

Q ss_pred             EEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc---ceeeeecCccee
Q 008400          197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK---TVSEITDDKKVI  273 (567)
Q Consensus       197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~---~~~d~~~d~~v~  273 (567)
                      +++|.+.++++.++++.+|+.|+++++++||+++||..+.         .....+++.+.++.+.   ..+....+..+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~   71 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---------GDLNILVITILLVLLFRASAAEKWNPDEELQ   71 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---------ccccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence            3578889999999999999999999999999999995544         2334466666655432   223333344444


Q ss_pred             EEEEeCC-CCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcCCC
Q 008400          274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY  352 (567)
Q Consensus       274 k~il~~G-~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~  352 (567)
                      -.++..= .+..+...||.+.+||++.++||++||+++.  +++|++|.||.++||+|||++|..|++||+..++|||++
T Consensus        72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L  149 (188)
T KOG0549|consen   72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL  149 (188)
T ss_pred             EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence            4444332 2557788999999999999999999999874  789999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCccEEEEEEEEEeeeccc
Q 008400          353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE  386 (567)
Q Consensus       353 ~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~  386 (567)
                      +||+.|..+   .||++++|+|+|||..+.+...
T Consensus       150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence            999999764   5999999999999999886543

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-26  Score=176.64  Aligned_cols=106  Identities=58%  Similarity=1.029  Sum_probs=103.3

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCc
Q 008400           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (567)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~  117 (567)
                      |+.+.++..|+|...|+.||.|++||++.+.||+.|||+.+++.|+.|.+|.|.+|.||++++..|.+||+++++|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            68899999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      |||..+.+..||||++|+|+|||+++
T Consensus        82 aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCCCccCCCcEEEEEEEEEec
Confidence            99999999999999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.9e-26  Score=205.55  Aligned_cols=108  Identities=57%  Similarity=0.977  Sum_probs=104.5

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      .++++|+.|++++.|+| ..|..+|.|.+||++++.||++|||++++++|+.|.||  ++|+||.+||.+|++|++++|+
T Consensus        97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~  173 (205)
T COG0545          97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT  173 (205)
T ss_pred             eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence            45899999999999999 99999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      |||++|||..+.+..||||++|+|+|+|+++
T Consensus       174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999999987779999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-24  Score=165.72  Aligned_cols=106  Identities=38%  Similarity=0.639  Sum_probs=99.3

Q ss_pred             ceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcC
Q 008400          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (567)
Q Consensus       271 ~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~  350 (567)
                      ++-+.+|.+|+|...|..|++|++||++.|.||+.||+++  +++.||+|.+|.++||.||+.++..|.+||++.++|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence            3678899999999999999999999999999999999886  58999999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      +|+||..+.   +..||||++|.|+|||+.+
T Consensus        80 d~aYG~~G~---p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGH---PGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCC---CCccCCCcEEEEEEEEEec
Confidence            999999884   3589999999999999875

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.88  E-value=2.8e-22  Score=186.41  Aligned_cols=108  Identities=46%  Similarity=0.776  Sum_probs=103.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++||||+++|.+|++|++++|+
T Consensus        98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~  174 (206)
T PRK11570         98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT  174 (206)
T ss_pred             EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence            45899999999999999 78999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      |||++|||..+.++.|||+++|+|+|+|++|
T Consensus       175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        175 IPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999999988899999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=8.3e-22  Score=180.86  Aligned_cols=108  Identities=49%  Similarity=0.872  Sum_probs=103.0

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEE-EEccCCcchHHHHHHhcccccccEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV  110 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~-~g~~~~~t~~~~~p~~-~~lG~~~~i~gl~~~l~~m~~Ge~~~  110 (567)
                      .+.++||.|..++.|+| +.+..|+.|.+||.+++. +|.+|++++.. .|+. |.+|.+.+|+||+.+|.||++|++|+
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            35899999999999999 999999999999999998 99999999874 8999 99999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      |+|||++|||..+.+ .||||++|+|+|||+.+
T Consensus       194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            999999999999986 89999999999999876

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.87  E-value=2.1e-21  Score=176.08  Aligned_cols=110  Identities=35%  Similarity=0.511  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400           33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (567)
Q Consensus        33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~  110 (567)
                      ..+++|++|.++.+  |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            45889999999976  666 78899999999999999999999999874 699999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |.|||++|||..+.+..||+|++|+|+|+|++|.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888999999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.2e-20  Score=168.51  Aligned_cols=103  Identities=34%  Similarity=0.585  Sum_probs=95.3

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008400          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (567)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~i  225 (567)
                      +..+++..+++..|+| ..|..++.|+|||++++.+|++||++    +|+.|.+|  ++++||.++|.+|++|++++++|
T Consensus        98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I  174 (205)
T COG0545          98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI  174 (205)
T ss_pred             ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence            3567899999999988 89999999999999999999999997    78888888  99999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008400          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (567)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (567)
                      ||++|||+.|.+     +.||||++|+|+|+|+++
T Consensus       175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence            999999999864     459999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=3.1e-20  Score=175.48  Aligned_cols=125  Identities=33%  Similarity=0.441  Sum_probs=119.6

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      +-...|+.+|.+||.+++.++|++|+..|.+||.+.|.++.+               |+|+|++|.++|+|+.|+++|+.
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence            678889999999999999999999999999999999998877               99999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      ||.+||++.|+|.|+|.||+.+|+|.+|+..|++||+++|+|...+..|+.+++++++..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999998888776554

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.83  E-value=7.8e-20  Score=176.18  Aligned_cols=110  Identities=49%  Similarity=0.876  Sum_probs=103.1

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  ++||||+++|.+|++|+++.|+
T Consensus       142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            35899999999999999 78999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeec
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~  146 (567)
                      ||++++||..+.+ .||++++++|+|+|+++.+.
T Consensus       219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             ECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence            9999999999865 79999999999999999753

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=4.8e-19  Score=156.68  Aligned_cols=134  Identities=34%  Similarity=0.489  Sum_probs=123.0

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      .+..+..++..||.+|+.|+|.+|...|..||.+++....          ..+..||.|+|+|.+|++.|+.||..|.+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            3678999999999999999999999999999999886552          567888999999999999999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK  538 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~  538 (567)
                      |+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+..++..+.++...+...+++.+.
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988877777655443

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.79  E-value=8.9e-19  Score=143.95  Aligned_cols=93  Identities=56%  Similarity=0.979  Sum_probs=87.0

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCC-CCC
Q 008400           49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT  127 (567)
Q Consensus        49 G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~-~~~  127 (567)
                      |.++|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||+++||..+. +..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            4457999999999999999999999999877799999999999999999999999999999999999999999987 457


Q ss_pred             CCCCCcEEEEEEEE
Q 008400          128 IPPNATLQFDVELL  141 (567)
Q Consensus       128 ip~~~~l~~~vel~  141 (567)
                      ||++++++|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.75  E-value=5.4e-18  Score=150.90  Aligned_cols=133  Identities=23%  Similarity=0.350  Sum_probs=97.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      .++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.+|++|+++.|.|||++|||+++        
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d--------   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS--------   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            578899999999999999999999987679999999999999999999999999999999999999999877        


Q ss_pred             CcEEEEEEEEEEeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008400          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (567)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (567)
                      ..++..+....+...... ..+..+......|.   +...-..++.|+++|||++++.++.++-+
T Consensus        76 ~~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~  139 (156)
T PRK15095         76 PDLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIE  139 (156)
T ss_pred             hHHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEE
Confidence            344444444443211000 01111100001111   11222345799999999999998877653

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.1e-17  Score=153.91  Aligned_cols=105  Identities=30%  Similarity=0.473  Sum_probs=97.6

Q ss_pred             cccccceeeeeeeccccccCCCCCCeEEEEEEEEeC-CCeEeeec---cceE-EEecCCCCcchHHHHHhhccCCcEEEE
Q 008400          149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL  223 (567)
Q Consensus       149 ~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~i  223 (567)
                      .+..+++...-+..|.| ..+..|+.|.++|.+++. .|++|+++   .|.. |.+|.+++|+||+.++.+|++|.+++|
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence            45678888999999998 999999999999999999 89999987   7888 999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008400          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (567)
Q Consensus       224 ~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (567)
                      +|||++|||.+|.+      .||||++|+|+|+|+..
T Consensus       195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence            99999999998874      79999999999999864

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.2e-17  Score=147.04  Aligned_cols=131  Identities=28%  Similarity=0.414  Sum_probs=100.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      +++.||.|+++|++++.||++||+|.....|+.|.+|.|++++||++||.||.+|++.+|.|||+.|||+++.       
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~-------   74 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP-------   74 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh-------
Confidence            4678999999999999999999999875689999999999999999999999999999999999999999873       


Q ss_pred             CcEEEEEEEEEEeeccccc---------cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEE
Q 008400          132 ATLQFDVELLSWTSVKDIC---------KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT  198 (567)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~---------~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~  198 (567)
                       .++-.+..-.|....+..         .++....+|        +.-.++.|+++|||++++.++.++-+-..+.
T Consensus        75 -~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V--------~~V~~~~V~VDfNHpLAGktL~feveVv~v~  141 (174)
T COG1047          75 -DLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVV--------TEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR  141 (174)
T ss_pred             -HHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEE--------EEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence             344334333333221110         111122233        3334579999999999999998876555443

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.71  E-value=7.8e-17  Score=146.26  Aligned_cols=104  Identities=23%  Similarity=0.341  Sum_probs=91.9

Q ss_pred             ccceeeeeeec--cccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008400          152 DGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (567)
Q Consensus       152 d~~~~~~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip  226 (567)
                      ..++...++..  |+| ..|..||.|++||.+++++|++|+++   .|..|.+|.+++++||+++|.+|++||++++.||
T Consensus        68 ~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP  146 (177)
T TIGR03516        68 QNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFP  146 (177)
T ss_pred             CCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEEC
Confidence            44555555554  555 68999999999999999999999987   5889999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008400          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (567)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (567)
                      |++|||..|.+     ..||||++|+|+|+|+++.
T Consensus       147 ~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       147 SHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             HHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence            99999998763     5799999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.68  E-value=1.8e-16  Score=144.53  Aligned_cols=125  Identities=20%  Similarity=0.272  Sum_probs=95.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      +++++++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+|+++|.+|++|++++|.|||+.|||+++        
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d--------   72 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------   72 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            467899999999999999999999986 48999999999999999999999999999999999999999987        


Q ss_pred             CcEEEEEEEEEEeecccc---------ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008400          132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (567)
Q Consensus       132 ~~l~~~vel~~~~~~~~~---------~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (567)
                      ..++..|....|......         ..++.+..+|.+        ..++.|+|+|||+|++.++.++-+
T Consensus        73 ~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~e--------v~~d~V~vD~NHPLAG~~L~F~ve  135 (196)
T PRK10737         73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFNVE  135 (196)
T ss_pred             hHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEE--------EcCCEEEEECCCcCCCCEEEEEEE
Confidence            344444444333211111         111222222322        345899999999999998877653

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.67  E-value=5.7e-16  Score=144.18  Aligned_cols=105  Identities=34%  Similarity=0.481  Sum_probs=95.7

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i  348 (567)
                      +.++..+|+++|.| ..|..++.|.|||.+++.||++|+++.  .++.|+.|.+|  .+|+||+.+|..|++|+++.|.|
T Consensus       101 ~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~--~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570        101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSV--ARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             CCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEecc--CCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            56789999999999 579999999999999999999999875  36789999996  58999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      |++++||+.+..   ..|||+++|+|+|+|+++
T Consensus       176 P~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAG---ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence            999999998764   469999999999999876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=5.3e-16  Score=156.69  Aligned_cols=117  Identities=36%  Similarity=0.499  Sum_probs=111.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+...++.||.+|+.|+|..|+++|.+||...|.+...               |+|+|+||++++++..|+.+|+.++++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l---------------YsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL---------------YSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            37888999999999999999999999999998877655               999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +|++.++|+|.|.|+..+.+|++|++.|.+++++||++.++...+++|...+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999997754

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.65  E-value=1.3e-15  Score=125.01  Aligned_cols=94  Identities=39%  Similarity=0.668  Sum_probs=85.3

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccc
Q 008400          282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ  361 (567)
Q Consensus       282 g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~  361 (567)
                      |..+|..|+.|++||.+++.+|++|+++..  ...|++|.+|.+.+++||+.+|..|+.||++.|.+++.++||+.+...
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            445799999999999999999999998753  688999999999999999999999999999999999999999987643


Q ss_pred             cccCCCCCccEEEEEEEE
Q 008400          362 ELAVVPPNSTVHYEVELV  379 (567)
Q Consensus       362 ~~~~ip~~~~l~f~ieL~  379 (567)
                        ..||++++|.|+|+|+
T Consensus        79 --~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 --PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             --TTBTTTSEEEEEEEEE
T ss_pred             --CCcCCCCeEEEEEEEC
Confidence              3599999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.63  E-value=1e-15  Score=145.98  Aligned_cols=122  Identities=31%  Similarity=0.442  Sum_probs=114.7

Q ss_pred             hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHH
Q 008400          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (567)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~  471 (567)
                      .++.+..+..++++||.||++|.|++|+.+|.+++...+.+...               |.|+|.+|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence            45678888899999999999999999999999999999988876               899999999999999999999


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      +.|+.+|....|||.||+.|...+|...+|.++++.+|+|+|++.+.+..+..+...
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl  211 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL  211 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence            999999999999999999999999999999999999999999999888888887653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=7.3e-15  Score=146.34  Aligned_cols=127  Identities=32%  Similarity=0.437  Sum_probs=107.7

Q ss_pred             cCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400          388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (567)
Q Consensus       388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (567)
                      -.++.+++.+.|..+|.+||.+|++|+|++||++|+.||.+.+..+.+               |.|+|+||..+|+|++.
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V  168 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV  168 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence            346788999999999999999999999999999999999999987766               99999999999999999


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 008400          468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       468 i~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~  529 (567)
                      +++|.++|+++|+.+|||+|||.||..+|++++|+.+..-.--++ =+|..+...+.+..+++
T Consensus       169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~  231 (606)
T KOG0547|consen  169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ  231 (606)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987443332 12333334444443333

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.58  E-value=1.2e-14  Score=140.40  Aligned_cols=104  Identities=34%  Similarity=0.602  Sum_probs=92.4

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008400          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (567)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~i  225 (567)
                      ..+.++.++++..|+| ..|..+|.|.|+|.+.+.||++|+++    .|..|.+  +.++|||+++|.+|++|+++.|+|
T Consensus       143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence            3567889999999999 68999999999999999999999986    4556655  579999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008400          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (567)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (567)
                      ||+++||..|.      +.|||+++|+|+|+|+++..
T Consensus       220 P~~laYG~~g~------~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        220 PPELAYGKAGV------PGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             CchhhCCCCCC------CCCCCCCcEEEEEEEEEecc
Confidence            99999999875      35999999999999998753

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.6e-14  Score=136.28  Aligned_cols=113  Identities=27%  Similarity=0.370  Sum_probs=101.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .|+.+++.||.+|+.++|..|...|+++|.....+.           .+...+|+|+|+|++.+|+|..|+.+|.+|+.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998765555           357788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      +|++.||++|-|+|++.+..+.+|..+++..+.++-+++.+..+
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l  192 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL  192 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            99999999999999999999999999998888776555444333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=3.5e-14  Score=139.05  Aligned_cols=128  Identities=25%  Similarity=0.365  Sum_probs=115.7

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      -..+.....+++||.+|++|+|..|-+.|..||.+.|.+.           .....||.|+|.+..++|+..+|+.+|+.
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-----------~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-----------KTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-----------chhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            3456788899999999999999999999999999988754           33677899999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      |+.+|+...|||.++|+||+.+++|++|.++|++|++++.+ .+++..++++...+++.+
T Consensus       313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk  371 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK  371 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999877 778888888877776554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=9.7e-14  Score=142.21  Aligned_cols=119  Identities=20%  Similarity=0.311  Sum_probs=110.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..++.+|+.+|..|+|.+|+..|.+|+++.+.+..               +|+++|.||+++|+|++|+.++++++.++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------------LYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            345788999999999999999999999998776443               48999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      |+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|..++...
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998887543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2e-13  Score=138.27  Aligned_cols=113  Identities=26%  Similarity=0.339  Sum_probs=106.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+++.||..|..|+|+.|+.+|..||.+.|.+...               |.|+++||.++++|.+|+++..+..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl---------------ySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL---------------YSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccch---------------hcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4578899999999999999999999999998876544               9999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      |.++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+....-+....
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999998888877766

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.47  E-value=7.4e-13  Score=117.68  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=103.7

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +...|..++..|+|.+|+..|.+++...|.+...               ++++|.++.++|++++|+..|++++.++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA---------------HIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4567999999999999999999999987765543               8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +.+++++|.++..+|++++|+..|++|++++|++......++.+...+.
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877776655543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.45  E-value=1.5e-12  Score=144.24  Aligned_cols=134  Identities=31%  Similarity=0.384  Sum_probs=116.1

Q ss_pred             CCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 008400          366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA  445 (567)
Q Consensus       366 ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~  445 (567)
                      +|++..+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|.+|+..|++|+.+.+. .            
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------  160 (615)
T TIGR00990        95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------  160 (615)
T ss_pred             CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence            44555555555554433 455789999999999999999999999999999999999999988763 1            


Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                         ..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence               24899999999999999999999999999999999999999999999999999999999988877654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.38  E-value=7.7e-12  Score=109.46  Aligned_cols=103  Identities=13%  Similarity=0.171  Sum_probs=95.5

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .-+.+...|..++..|+|++|.+.|+-.+.+.+.+...               ++|+|.|+..+|+|.+|+..|.+++.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34567889999999999999999999999998877665               999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999987444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.3e-12  Score=116.81  Aligned_cols=117  Identities=32%  Similarity=0.413  Sum_probs=104.8

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+.++++.||.+|...+|..|+.+|.+||.+.|....+               |.|+|.||+++++|+.+..+|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            358899999999999999999999999999999887766               89999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C--CCHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID---P--DNRDVKLEYKTLKEK  528 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---P--~n~~~~~~l~~~~~~  528 (567)
                      ++|+.+|++|-+|.+++....|++|+..+.+|+.+.   |  --.++..+|..++.+
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            999999999999999999999999999999997763   1  123677777776554

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.34  E-value=2.8e-12  Score=114.27  Aligned_cols=81  Identities=21%  Similarity=0.377  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG  243 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~  243 (567)
                      .++.++.|++||++++.+|++|+++    +|+.|++|.+++++||+++|.+|++|+++.+.|||+.|||+.         
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~---------   74 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP---------   74 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence            3567899999999999999999986    689999999999999999999999999999999999999964         


Q ss_pred             CCCCCCeEEEEEEeeccc
Q 008400          244 AVPPNATLQIALELVSWK  261 (567)
Q Consensus       244 ~ip~~~~l~~~v~l~~~~  261 (567)
                          +..++..+.+..|.
T Consensus        75 ----d~~~v~~vp~~~f~   88 (156)
T PRK15095         75 ----SPDLIQYFSRRDFM   88 (156)
T ss_pred             ----ChHHEEEecHHHCC
Confidence                33466666666653

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=5.8e-12  Score=111.24  Aligned_cols=122  Identities=25%  Similarity=0.366  Sum_probs=90.2

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~  244 (567)
                      ...++.|+++|+.++.||++++++    .|+.|++|.+++++||+++|.+|.+|++.++.|||+.|||..          
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~----------   72 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY----------   72 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC----------
Confidence            457899999999999999999987    599999999999999999999999999999999999999964          


Q ss_pred             CCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCC-----CCCCCCCCCEEEEEEEEEecCCcEEE
Q 008400          245 VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD-----GFERPNEGAVVKVKLIGKLQDGTVFV  307 (567)
Q Consensus       245 ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~-----g~~~p~~~~~v~v~y~~~l~~g~~~~  307 (567)
                         +..|+-.+.+..|....    +..+=..+..++.     |...-..+..|+|.|+..|++.++.+
T Consensus        73 ---~~~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~f  133 (174)
T COG1047          73 ---DPDLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHF  133 (174)
T ss_pred             ---ChHHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEE
Confidence               34456666666654311    1112222222221     22233446778888888887666554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.32  E-value=2.4e-12  Score=129.52  Aligned_cols=121  Identities=22%  Similarity=0.318  Sum_probs=114.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .|..++++++.+|+.+.|+.|+..|.+||++.+++..+               +.|+|++++|.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence            47788999999999999999999999999999988877               889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      +|...|+|+|+|.++++++++.+|..+|++...+.|+++.+++.+..|.....++.
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988776654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.32  E-value=2.4e-11  Score=106.82  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=103.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +......|..+++.|++++|++.|++++...+.+.               .++.++|.|+++++++.+|+..+++++..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45578899999999999999999999998766543               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      |.++..++++|.+|..+|++++|+..|+++++++|++........++...+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987776666665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=5.6e-12  Score=121.99  Aligned_cols=155  Identities=31%  Similarity=0.451  Sum_probs=137.5

Q ss_pred             ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh-HH---HHHHHHHHHHHHhhHHHHHHhccCHHH
Q 008400          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EE---KKQAKALKVACNLNNAACKLKLKDYKQ  466 (567)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-e~---~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (567)
                      +....+..++..++.|+..|++++|..|...|.++++++........ +.   ......++..++.|++.|-++.+.+..
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~  293 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG  293 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence            34456777888999999999999999999999999999874211111 11   344667788899999999999999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |+..|..+++.++...+|+||++.+++.+.++++|+++++.|....|++..+...+...+++..+++.++++.+.+||+
T Consensus       294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999984

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.24  E-value=3e-11  Score=123.77  Aligned_cols=138  Identities=16%  Similarity=0.098  Sum_probs=115.5

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+.+.||.+-..+.|++|+.+|.+|+.+-+.....               |.|+|.+|+.+|..+.||..|+++|+
T Consensus       250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral~  314 (966)
T KOG4626|consen  250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRALE  314 (966)
T ss_pred             cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHHh
Confidence            346778899999999999999999999999887765544               88999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR  550 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~  550 (567)
                      ++|+.+.||.++|.|+...|+..+|..+|++||.+.|...++...|+.++.....-..+ -.+|++.|.-....
T Consensus       315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A-~~ly~~al~v~p~~  387 (966)
T KOG4626|consen  315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA-TRLYLKALEVFPEF  387 (966)
T ss_pred             cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH-HHHHHHHHhhChhh
Confidence            99999999999999999999999999999999999999988888888887666555433 34777776644433

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.23  E-value=3.2e-11  Score=110.29  Aligned_cols=80  Identities=20%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      ...++.|+++|+.++.+|++++++   +|+.|++|.++++|+|+++|.+|++|++.+|.|||+.|||..           
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~-----------   71 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY-----------   71 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----------
Confidence            356789999999999999999987   899999999999999999999999999999999999999964           


Q ss_pred             CCCCeEEEEEEeeccc
Q 008400          246 PPNATLQIALELVSWK  261 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~  261 (567)
                        +..++..|....|.
T Consensus        72 --d~~lV~~vpr~~F~   85 (196)
T PRK10737         72 --DENLVQRVPKDVFM   85 (196)
T ss_pred             --ChHHEEEecHHHCC
Confidence              34566666666663

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.17  E-value=3.9e-10  Score=113.03  Aligned_cols=105  Identities=20%  Similarity=0.142  Sum_probs=98.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+.++|..+...|++.+|+..|++|+...|.+..               +|+++|.++..+|++++|+..++++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------------AYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34667889999999999999999999999998876543               489999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ++|++..+++++|.++...|++++|+.+|+++++++|++.
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999996

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.17  E-value=7.8e-11  Score=90.48  Aligned_cols=65  Identities=31%  Similarity=0.474  Sum_probs=62.9

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP  513 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P  513 (567)
                      ..+.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|++++++|++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            458899999999999999999999999999999999999999999999 79999999999999998

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.15  E-value=1.5e-10  Score=118.79  Aligned_cols=112  Identities=21%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      |..+.+.||.+...|.++.|.+.|.+|++..+..               ..+++|+|.+|..+|++++|+.+|++||+++
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            4445555555555555555555555555554432               2335566666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      |+...||.++|..|..+|+.+.|+.+|.+|+.++|...++...|..+
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi  465 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI  465 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence            65555555555555555555555555555555555555555444444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.14  E-value=5.9e-10  Score=104.48  Aligned_cols=111  Identities=18%  Similarity=0.137  Sum_probs=97.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHH-HhccC--HHHHHHHHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV  474 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~-~k~~~--~~~Ai~~~~~a  474 (567)
                      .+..+...|..+...|+|+.|+..|.+|+++.+.+...               ++++|.++ ...|+  +.+|+..++++
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~---------------~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL---------------YAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            35678889999999999999999999999998876544               88999984 67777  59999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      ++.+|+++.+++++|.++..+|+|++|+..++++++++|.+..-...++
T Consensus       137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            9999999999999999999999999999999999999998765444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.08  E-value=2.1e-09  Score=91.85  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+...|..+++.|+|++|+..|.+++...+....            ...+++++|.++.+.++++.|+..+++++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            45678899999999999999999999987664321            133478899999999999999999999999988


Q ss_pred             CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (567)
Q Consensus       480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  522 (567)
                      ++   ..+++.+|.++..++++++|+..++++++..|++..+....
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            86   67899999999999999999999999999999997655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.06  E-value=1.4e-09  Score=120.59  Aligned_cols=147  Identities=14%  Similarity=0.108  Sum_probs=97.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHH------HHHHHHHHHHhhHHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKK------QAKALKVACNLNNAACK  458 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~------~~~~~~~~~~~nla~~~  458 (567)
                      .+..+...|..++..|++++|+..|++++...|.....             .++-..      ........+++++|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44556777888888888888888888888876543211             000000      01111244677777777


Q ss_pred             HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK  538 (567)
Q Consensus       459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~  538 (567)
                      +.+|++++|+.+|++++.++|++..+++++|.++..+|++++|+..|++++++.|++..+...+..+....++..++ .+
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-~~  488 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-IE  488 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-HH
Confidence            77777777777777777777777777777777777777777787777777777777777777777766655544432 33


Q ss_pred             HHHHhhH
Q 008400          539 FYGNMFA  545 (567)
Q Consensus       539 ~~~~~f~  545 (567)
                      .|.+.+.
T Consensus       489 ~~~~Al~  495 (615)
T TIGR00990       489 KFDTAIE  495 (615)
T ss_pred             HHHHHHh
Confidence            4554443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.03  E-value=1.3e-09  Score=104.85  Aligned_cols=128  Identities=23%  Similarity=0.287  Sum_probs=109.6

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      .+++......+.+......++|.+++..+++.++..|.....           +...+--++.||.+-+++-+||+.|++
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~e  332 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCKE  332 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHHH
Confidence            345666777788888899999999999999999877653322           222345678999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      +|.++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.++++..++.
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs  391 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS  391 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988887665443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.01  E-value=1.8e-09  Score=103.94  Aligned_cols=110  Identities=24%  Similarity=0.271  Sum_probs=99.3

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .++.+.+.|+.++.+|+|..|+.+|..|++..|.+..               +++.+|..|+.+|+-..|+.++.++|++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---------------aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---------------AIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---------------HHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            4678889999999999999999999999998776443               3889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  522 (567)
                      .|+..-|-..||.+++++|+++.|..+|+++|+.+|++-......
T Consensus       102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq  146 (504)
T KOG0624|consen  102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ  146 (504)
T ss_pred             CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence            999999999999999999999999999999999999765433333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.00  E-value=4e-10  Score=108.73  Aligned_cols=122  Identities=21%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             CChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH
Q 008400          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (567)
Q Consensus       390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~  469 (567)
                      -..++.++.|...+-.+...+..|+++.|+..|.+|+.+.+.....               |.+++.++++++++..|++
T Consensus       105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l---------------~~kr~sv~lkl~kp~~air  169 (377)
T KOG1308|consen  105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAIL---------------YAKRASVFLKLKKPNAAIR  169 (377)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhh---------------cccccceeeeccCCchhhh
Confidence            3567889999999999999999999999999999999998876654               8999999999999999999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      +|+.|++++|+..+.|-.+++++..+|++.+|..+|..|++++-+. ++...+.....
T Consensus       170 D~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE-~~~a~lKeV~p  226 (377)
T KOG1308|consen  170 DCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE-ANSATLKEVFP  226 (377)
T ss_pred             hhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH-HHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999997443 33444444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.99  E-value=8.6e-09  Score=94.67  Aligned_cols=110  Identities=24%  Similarity=0.248  Sum_probs=95.8

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      .+...+..+...|..++..|+|++|+..|++++...+....            ...++.++|.++.++|+|++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35567788899999999999999999999999987543211            234689999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 008400          474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~--------------~~~A~~~~~~al~l~P~n  515 (567)
                      ++..+|.+..+++.+|.+|..+++              +++|++.+++++.++|+|
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999988              678888888888888887

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.1e-08  Score=102.16  Aligned_cols=136  Identities=16%  Similarity=0.136  Sum_probs=117.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+.-.|.++...++-..|+..|++|++++|.+...               ++-+|++|--++.+--|+-++++|+.+.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            4455667788888888888888888888888766544               8999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR  550 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~  550 (567)
                      |+++..|.-+|.||.++++.++|+++|++|+.....+..+...|+++.+.+++.+++ ++.|.+........
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA-a~~yek~v~~~~~e  499 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA-AQYYEKYVEVSELE  499 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999988888999999999988877754 46777777755333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.97  E-value=2.7e-08  Score=82.81  Aligned_cols=117  Identities=20%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHH
Q 008400          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (567)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~  471 (567)
                      ....++....+--+|..+-..|+.+.|++.|.+||.+.|...+.               |+|+|.++.-+++.++|+.++
T Consensus        36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdDL  100 (175)
T KOG4555|consen   36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDDL  100 (175)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHHH
Confidence            34567778888889999999999999999999999999876655               999999999999999999999


Q ss_pred             HHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          472 TKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       472 ~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++|+++.-..    ..++..+|..|..+|+.+.|+.+|+.|.++-...  ++..|-.+
T Consensus       101 n~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~l  156 (175)
T KOG4555|consen  101 NKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVEL  156 (175)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhc
Confidence            9999986433    5789999999999999999999999999997554  55555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.97  E-value=2.3e-09  Score=81.17  Aligned_cols=65  Identities=29%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      +.+|..+++.|+|++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36889999999999999999999999999999999999999999999999999999999999984

>PRK15331 chaperone protein SicA; Provisional

Probab=98.96  E-value=5.9e-09  Score=91.82  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      -+.....|..+|.+|+|++|...|+-...+.+.+..+               ++.+|.|+..+++|++|+..|..+..++
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4556788899999999999999999888776665544               7899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~  518 (567)
                      ++++...|..|.||+.+|+.+.|+.+|..|+. .|.+..+
T Consensus       102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence            99999999999999999999999999999998 4565433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.95  E-value=8.3e-09  Score=117.83  Aligned_cols=118  Identities=5%  Similarity=-0.021  Sum_probs=85.3

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..+.+.|++++|+..|.+++...|.+.               .+++|+|.++..+|++++|+..++++++++|+
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            344555566666666666666666666555433               34778888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      ++.+++++|.++..+|++++|+..|++|++++|++..+...+..+..+....+
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~  728 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR  728 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence            88888888888888888888888888888888888777776666655544443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=2.4e-09  Score=111.60  Aligned_cols=136  Identities=18%  Similarity=0.126  Sum_probs=97.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---------ChHHHH-HHHHH---------HHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKK-QAKAL---------KVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~-~~~~~---------~~~~~~nla~~~~  459 (567)
                      -+.+...||.+--+++++.|+++|++|+.+.+.....         ..++.+ .....         ...+|+-+|.+|+
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            3678899999999999999999999999998854322         111211 11111         2345677788888


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      |+++++.|.-++++|++++|.|.-.+.-.|..+.++|+.++|+..|++|+.+||.|...+-....+...+.++.+
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            888888888888888888888877777888888888888888888888888888886665555555554544443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.2e-08  Score=102.57  Aligned_cols=139  Identities=20%  Similarity=0.184  Sum_probs=113.3

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...|..+.-+|..+|-.|++..|...|..+|.+.+.....               |..+|..|+.+++-.+-..++++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence            4568889999999999999999999999999987765533               8899999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhhhcc
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-KKEAKFYGNMFAKMKSRA  551 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~-~~e~~~~~~~f~~~~~~~  551 (567)
                      .+||.|+..||.||+.++-+++|++|+++|++|+.|+|+|  +...+..|-..-++.+ ..-.+.|...-.++....
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~  462 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP  462 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999999999999999  5555555433333222 223345555555554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.92  E-value=1.4e-08  Score=95.11  Aligned_cols=124  Identities=13%  Similarity=0.077  Sum_probs=105.4

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .++.++++..|.++++..|.+..               .|.++|.+|..+++++.|+..|+++++++|+++.+++.+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~---------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSE---------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56678888888888887776554               389999999999999999999999999999999999999998


Q ss_pred             H-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhcc
Q 008400          492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRA  551 (567)
Q Consensus       492 ~-~~l~~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~  551 (567)
                      + ...|+  +++|+..++++++++|++..+...+..+...+++..++. +.|+++.+......
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~  178 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCc
Confidence            5 67787  599999999999999999999999998887777666543 57778777665544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.91  E-value=2.2e-08  Score=91.98  Aligned_cols=132  Identities=23%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC----------------ChHHH---HHHHHHHHHHHhhH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------------GDEEK---KQAKALKVACNLNN  454 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------------~~e~~---~~~~~~~~~~~~nl  454 (567)
                      ..-..+....+.|..++.+|++..|...+++||+..|+....                ..+.-   ..++.-...+++|.
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            344567778889999999999999999999999988764422                00000   01111223456666


Q ss_pred             HHHHHhccCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       455 a~~~~k~~~~~~Ai~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      |.-.+.+|+|++|...+++|+..  -+..+..|-|+|.|.++.|+++.|.+.|+++|+++|++......+.+.
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            66666666666666666666652  123356777888888888888888888888888888886655555444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.90  E-value=6.9e-09  Score=83.45  Aligned_cols=98  Identities=35%  Similarity=0.451  Sum_probs=86.2

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +...|..++..|++.+|+..|.++++..+...               .++.++|.|+...+++++|+..+++++...|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            56788889999999999999999988755322               347889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      ..+++.+|.++...+++++|...+.++++++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999988874

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.3e-09  Score=112.98  Aligned_cols=141  Identities=22%  Similarity=0.368  Sum_probs=113.1

Q ss_pred             CCCCCCcCCCCCCCCcCccCCceee---ecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEE
Q 008400            9 AANEMDADMDLPDDAPMMKVGEEKE---IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF   85 (567)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~   85 (567)
                      +...+|++..++..-|...+.++..   +..-.-....+..-++ . ++.||.|+|+|.++. ||..|+....  ..+.|
T Consensus       113 Pev~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l  187 (441)
T COG0544         113 PEVELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSL  187 (441)
T ss_pred             eceecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEE
Confidence            3467788888888888888885441   2222333444444444 3 889999999999975 9999988855  56999


Q ss_pred             EccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeeccccccccceeeee
Q 008400           86 TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI  159 (567)
Q Consensus        86 ~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i  159 (567)
                      .||+|++||||+.+|+||++|+.+.|.|..+..|....+     +|.+..|.|+|..+.......-+..+.+.+
T Consensus       188 ~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~  256 (441)
T COG0544         188 ELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKL  256 (441)
T ss_pred             EEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence            999999999999999999999999999999999988775     779999999999999877777677766655

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.90  E-value=2.1e-09  Score=86.00  Aligned_cols=83  Identities=29%  Similarity=0.380  Sum_probs=71.8

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      +|+|+.|+..|++++...+.+.             ....++++|.||+++|+|++|+..+++ +..++.+...++.+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            6899999999999999877421             123477899999999999999999999 88899999999999999


Q ss_pred             HHhcCCHHHHHHHHHHH
Q 008400          492 YIQMADLDLAEFDIKKA  508 (567)
Q Consensus       492 ~~~l~~~~~A~~~~~~a  508 (567)
                      ++.+|+|++|++.|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999876

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.1e-08  Score=104.80  Aligned_cols=120  Identities=23%  Similarity=0.199  Sum_probs=101.0

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+++.|...|+.+.|.+|+..|+.++...+......        ..-...++|+|.+|.|++.|.+||.+++++|.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            456788888888888888888888885544322110        022345889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      ++.++--.|.+|..+|+++.|+..|.+||-++|+|..+...|+.+-..
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999888888876544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.89  E-value=7.5e-09  Score=98.79  Aligned_cols=92  Identities=25%  Similarity=0.318  Sum_probs=82.9

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      +-|.-.++.++|.+|+..|.+||+++|+|+-.|.+||.||.+||+|+.|++++++|+.+||....++.-|..+.-.+.+.
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            67888889999999999999999999999999999999999999999999999999999999988888888888877777


Q ss_pred             HHHHHHHHHHhhH
Q 008400          533 NKKEAKFYGNMFA  545 (567)
Q Consensus       533 ~~~e~~~~~~~f~  545 (567)
                      .++..+ |++.+.
T Consensus       166 ~~A~~a-ykKaLe  177 (304)
T KOG0553|consen  166 EEAIEA-YKKALE  177 (304)
T ss_pred             HHHHHH-HHhhhc
Confidence            766655 666664

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=4.2e-08  Score=95.00  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=98.8

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|++++...+.+..            ...+++++|.++.+++++++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999988775431            2334789999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       478 ~p~~~k---a~~~~a~a~~~l--------~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      .|+++.   +++.+|.++..+        +++++|+..|+++++.+|++..+...+.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            998876   799999999987        8899999999999999999976554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.87  E-value=2e-08  Score=110.46  Aligned_cols=134  Identities=4%  Similarity=-0.024  Sum_probs=116.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..++..|......|.|++|.+.+..++.+.|...               .+..++|.+..+++++++|+..|+++|..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------------~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------------EAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            367788899999999999999999999999988654               34889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      +|++..+++.+|.++.++|+|++|+..|++++..+|++..++..+..+.+.+.+..++. ..|++.++..
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~  218 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAI  218 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhh
Confidence            99999999999999999999999999999999999999888888888877766665443 4666665544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.86  E-value=6.6e-08  Score=88.43  Aligned_cols=111  Identities=18%  Similarity=0.084  Sum_probs=92.3

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      .....+..+...|..++..|+|++|+..|.+|+.+.+...            ....+++|+|.++.++|++++|+..|.+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3445788889999999999999999999999998754211            1234689999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCCH
Q 008400          474 VLDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR  516 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~-------~l~~~~-------~A~~~~~~al~l~P~n~  516 (567)
                      ++.++|.+..++.++|.++.       .+|+++       +|+..+++++..+|.+.
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999888       777876       55666667778888774

>TIGR00115 tig trigger factor

Probab=98.85  E-value=9.1e-09  Score=107.95  Aligned_cols=101  Identities=23%  Similarity=0.402  Sum_probs=86.4

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (567)
                      ..++.||.|.++|+++. +|+.|+++..  .++.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+.     +
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~  216 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A  216 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence            35788999999999986 8999988743  78999999999999999999999999999999999999987765     6


Q ss_pred             CCcEEEEEEEEEEeeccccccccceeeee
Q 008400          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (567)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~~~i  159 (567)
                      |.++.|.|+|.++.......-+..+++.+
T Consensus       217 gk~~~f~v~i~~I~~~~~peldDefak~~  245 (408)
T TIGR00115       217 GKEATFKVTVKEVKEKELPELDDEFAKEL  245 (408)
T ss_pred             CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            79999999999998765555555555543

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK12370 invasion protein regulator; Provisional

Probab=98.83  E-value=3e-08  Score=108.25  Aligned_cols=107  Identities=12%  Similarity=-0.054  Sum_probs=50.7

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      ..|..+...|++++|+..|++|+++.|.+..               +++++|.++..+|++++|+..++++++++|.++.
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLLSPISAD---------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            3444444445555555555555544443221               1444555555555555555555555555555544


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTL  525 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~  525 (567)
                      +++.++.+++.+|++++|+..++++++.. |++..+...+..+
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~  450 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF  450 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence            44444444444555555555555554442 3444433444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.82  E-value=4.3e-08  Score=87.05  Aligned_cols=107  Identities=10%  Similarity=0.017  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 008400          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (567)
Q Consensus       420 ~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~  499 (567)
                      ..|++|++..|.                  .+.++|.++..+|++++|+.+|.+++.++|.+..+++++|.++..+|+++
T Consensus        14 ~~~~~al~~~p~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~   75 (144)
T PRK15359         14 DILKQLLSVDPE------------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT   75 (144)
T ss_pred             HHHHHHHHcCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            457777776553                  15578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       500 ~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      +|+.+|+++++++|++..+...++.+...+++..++. ..|.+...
T Consensus        76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~  120 (144)
T PRK15359         76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            9999999999999999999999998877776665533 34444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=4.4e-08  Score=91.87  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=109.1

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|+|.+|+..+.+|....+.+...               |+-+|.||.++|+++.|...|.+++++.|+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            34459999999999999999999999999888766               889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                      ++.++.|+|..|+-.|+++.|...+..+...-+.+..+...+..+........+.+
T Consensus       167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            99999999999999999999999999999998889888888888766655554433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.81  E-value=4.7e-09  Score=80.47  Aligned_cols=66  Identities=29%  Similarity=0.384  Sum_probs=60.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhcc
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~  477 (567)
                      |..+...|..++..|+|++|+..|++|+++.+.+.               .+++|+|.||.+++ ++.+|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---------------EAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            67789999999999999999999999999977543               35999999999999 799999999999999


Q ss_pred             CC
Q 008400          478 DS  479 (567)
Q Consensus       478 ~p  479 (567)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            88

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.81  E-value=1.3e-07  Score=90.26  Aligned_cols=118  Identities=20%  Similarity=0.280  Sum_probs=86.9

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +...|..++..|+|++|+..|.+++.....             ......+.++|.|+...|++++|+..+.+++..+|.+
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            344555666666666666666666643111             0112347788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      ..+++.+|.++..+|++++|+..+++++++.|.+......+..+....+..
T Consensus       169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (234)
T TIGR02521       169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV  219 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999888766665555555444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=98.81  E-value=4.2e-08  Score=107.10  Aligned_cols=93  Identities=14%  Similarity=0.061  Sum_probs=85.2

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .+++.+|+..+++|+.+.|.+...               +..+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQA---------------LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN  381 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456899999999999998765533               78899999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          492 YIQMADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                      |..+|++++|+..|+++++++|.+....
T Consensus       382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence            9999999999999999999999986543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.79  E-value=5.4e-08  Score=111.26  Aligned_cols=99  Identities=10%  Similarity=0.106  Sum_probs=87.7

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      .++.|+|.++.++|++++|+..+.+++.++|+++.+++++|.++..+|++++|+..|++|++++|++..+...+..+...
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHHHHHHHhhHhhh
Q 008400          529 MKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       529 ~~~~~~~e~~~~~~~f~~~~  548 (567)
                      +++..+.. ..|++.+....
T Consensus       690 lGd~~eA~-~~l~~Al~l~P  708 (987)
T PRK09782        690 LDDMAATQ-HYARLVIDDID  708 (987)
T ss_pred             CCCHHHHH-HHHHHHHhcCC
Confidence            77766544 36666665443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.79  E-value=1.2e-07  Score=92.34  Aligned_cols=113  Identities=13%  Similarity=0.081  Sum_probs=95.5

Q ss_pred             hhhhhhhHH-HhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          401 KKKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       401 ~~~~~G~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ...+.+..+ ++.|+|++|+..|+..+...|....            ...+++.+|.+|+..|+|++|+..|.+++...|
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP  211 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP  211 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            345555665 5679999999999999999887542            234578999999999999999999999999888


Q ss_pred             CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++   +.+++++|.++..+|++++|+..|+++++..|++..+.....++
T Consensus       212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            75   78999999999999999999999999999999997665554444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=3e-08  Score=76.91  Aligned_cols=70  Identities=26%  Similarity=0.418  Sum_probs=64.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      ...|++.++|+.|+..+++++.++|+++.+++.+|.++..+|++.+|+.+|+++++++|++..+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5678999999999999999999999999999999999999999999999999999999999877665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.77  E-value=1.4e-07  Score=90.04  Aligned_cols=84  Identities=21%  Similarity=0.255  Sum_probs=62.0

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ++.+++.++..+|++++|+..+.+++...  +.....++++|.++...|++++|...|.++++.+|++..+...+..+..
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            46777888888888888888888887643  3456777888888888888888888888888888887666666666655


Q ss_pred             HHHHHH
Q 008400          528 KMKEYN  533 (567)
Q Consensus       528 ~~~~~~  533 (567)
                      ..++..
T Consensus       181 ~~~~~~  186 (234)
T TIGR02521       181 LRGQYK  186 (234)
T ss_pred             HcCCHH
Confidence            544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK01490 tig trigger factor; Provisional

Probab=98.77  E-value=2.3e-08  Score=105.77  Aligned_cols=99  Identities=25%  Similarity=0.445  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      .++.||.|.++|+++. +|..|+++..  .++.|.+|.+.+++||+++|.||++|+++.|.++++..|+....     +|
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag  228 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG  228 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence            4789999999999997 8988887743  68999999999999999999999999999999999999987665     67


Q ss_pred             CcEEEEEEEEEEeeccccccccceeee
Q 008400          132 ATLQFDVELLSWTSVKDICKDGGIIKK  158 (567)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~~~  158 (567)
                      .++.|.|+|.++.......-+..+++.
T Consensus       229 k~~~f~v~v~~V~~~~~pel~Defak~  255 (435)
T PRK01490        229 KEATFKVTVKEVKEKELPELDDEFAKK  255 (435)
T ss_pred             CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence            999999999999875555444555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.6e-08  Score=97.92  Aligned_cols=118  Identities=19%  Similarity=0.185  Sum_probs=107.7

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      -.||-+--+++.+.|+..|++|+++++....               ++.-+|.=|..+++-..|+..|++|++++|.+-+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            4577777889999999999999999886443               4889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                      |||-+|++|.-++-..-|+-+|++|+++-|++..++..|+.|..++.+-.++.
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi  452 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI  452 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence            99999999999999999999999999999999999999999998887666544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.77  E-value=1.1e-07  Score=95.46  Aligned_cols=109  Identities=14%  Similarity=0.023  Sum_probs=91.1

Q ss_pred             CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 008400          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (567)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~  492 (567)
                      +..+.++..+.++|...+.+.           ......|+++|.+|..+|++.+|+.+++++++++|+++.+|+++|.++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            466788888888886543222           223456999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       493 ~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      ..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  148 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY  148 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999988777766655444333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=6.2e-08  Score=101.22  Aligned_cols=123  Identities=18%  Similarity=0.180  Sum_probs=110.4

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      +.-.++.-.|..|.++++|+.|.-+|++|+.+.|.+...               .+-++..+.++|+.++|+..+++|+.
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            445677788888899999999999999999888876543               66789999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      +||.|+-.-|.+|.++..+++|++|+..|+..-++.|++..+..+++++.++++....
T Consensus       552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence            9999999999999999999999999999999999999999999999999888876654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=8.5e-08  Score=94.84  Aligned_cols=143  Identities=18%  Similarity=0.223  Sum_probs=110.6

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+.+++-+|..++-..+.+.|+.+|+++|++.|.....   ...-...-....+-+.|.-.++.|+|..|.+.|..+|.+
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            46778889999999999999999999999987754321   112222334445678899999999999999999999999


Q ss_pred             CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHh
Q 008400          478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT--LKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       478 ~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~--~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ||+|    ++.|++||.+...+|+.++|+.+++.|++|||.-  ++.++.+  |...+.++.. ....|.+....
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra~c~l~le~~e~-AV~d~~~a~q~  350 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRANCHLALEKWEE-AVEDYEKAMQL  350 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence            9976    6889999999999999999999999999999988  5555555  4444444432 23345555444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.72  E-value=6.4e-08  Score=84.89  Aligned_cols=97  Identities=15%  Similarity=0.021  Sum_probs=84.8

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +..++|.++++.+++.+|+..+++++..+|.++.+++++|.++..++++++|+..|+++++++|.+......++.+....
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence            37799999999999999999999999999999999999999999999999999999999999999999998888887776


Q ss_pred             HHHHHHHHHHHHHhhHhh
Q 008400          530 KEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       530 ~~~~~~e~~~~~~~f~~~  547 (567)
                      ++..+.. +.|+..+..-
T Consensus        99 g~~~~A~-~~~~~al~~~  115 (135)
T TIGR02552        99 GEPESAL-KALDLAIEIC  115 (135)
T ss_pred             CCHHHHH-HHHHHHHHhc
Confidence            6554433 4556555543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.72  E-value=6.5e-07  Score=86.67  Aligned_cols=131  Identities=17%  Similarity=0.236  Sum_probs=103.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+++.|+|++|++.|++++...|...            ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            34467788999999999999999999998877543            233447899999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHH
Q 008400          479 SRN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       479 p~~---~ka~~~~a~a~~~l~~------------------~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~  534 (567)
                      |++   +.|+|.+|.++..++.                  ..+|+..|+..++..|++.   +++..+..|+.++.+.+-
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            987   5789999999866641                  2578899999999999986   555666666666665554


Q ss_pred             HHHHHHH
Q 008400          535 KEAKFYG  541 (567)
Q Consensus       535 ~e~~~~~  541 (567)
                      .-.+.|-
T Consensus       180 ~ia~~Y~  186 (243)
T PRK10866        180 SVAEYYT  186 (243)
T ss_pred             HHHHHHH
Confidence            4444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.71  E-value=2.8e-07  Score=84.86  Aligned_cols=137  Identities=18%  Similarity=0.228  Sum_probs=108.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+.-+.+-|..++.+|+|++|...|++|+..-..-.             ....+.|++.|.++.|+++.|..+++++|++
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-------------PSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            355677888888888888888888888886422111             1223889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                      +|+++-+...+++.++..|+|-.|...+++...--+-+.+...+.-++.+++.+..  ....|...+.++-.
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~--~a~~Y~~qL~r~fP  238 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA--AAQRYQAQLQRLFP  238 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999888877666555566666665544  45577776665433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.71  E-value=3.5e-08  Score=75.34  Aligned_cols=67  Identities=31%  Similarity=0.388  Sum_probs=61.5

Q ss_pred             HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++.|+|++|+..+++++..+|++..+++.+|.||+..|++++|...+++++..+|++..+...+.++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999988777776543

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.71  E-value=1e-07  Score=105.94  Aligned_cols=113  Identities=21%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHH----HHHHHHHHhccCCC
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR  480 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~----Ai~~~~~al~~~p~  480 (567)
                      .|..++..|++++|+..|.+++...+.+.               .+++++|.++..+|++++    |+..|+++++++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            45677778888888888888887655422               235556666666666653    56666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      +..++..+|.++..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~  334 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY  334 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            6666666666666666666666666666666666655555555554444333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.70  E-value=2.9e-07  Score=79.44  Aligned_cols=110  Identities=17%  Similarity=0.202  Sum_probs=94.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|...++.|+|.+|++.|+......|...-.            ..+.+.++.+|++.++|.+|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3456788899999999999999999988877765432            3457789999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008400          479 SRNV---KALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDVKL  520 (567)
Q Consensus       479 p~~~---ka~~~~a~a~~~l~~---------------~~~A~~~~~~al~l~P~n~~~~~  520 (567)
                      |+++   -|+|.+|.+++.+..               ..+|..+|++.++.-|++.-+..
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9985   689999999999987               88999999999999999864433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=1.9e-08  Score=103.43  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=91.1

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~  482 (567)
                      -..|..++-.|+|++|+.+|+.||...|.+...               |+.+|+....-.+..+||..|++||++.|..+
T Consensus       434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV  498 (579)
T KOG1125|consen  434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGYV  498 (579)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence            357888889999999999999999998877654               99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      .+.||+|.+++.+|-|++|.+.|-.||.+.+.
T Consensus       499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999877

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.67  E-value=5.8e-07  Score=84.82  Aligned_cols=130  Identities=20%  Similarity=0.245  Sum_probs=100.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|.+|+..|++.+...|....            ...+.+.+|.++++.++|..|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            567889999999999999999999999998876553            23457899999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          479 SRN---VKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFY  540 (567)
Q Consensus       479 p~~---~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~~e~~~~  540 (567)
                      |++   ..|+|.+|.+++.+.           ...+|+..|+..++..|++.   ++...+..|..++.+.+-.-.++|
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y  151 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY  151 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987   469999999987764           24589999999999999986   555666666666655554333333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.65  E-value=2.2e-07  Score=103.40  Aligned_cols=111  Identities=11%  Similarity=0.057  Sum_probs=89.8

Q ss_pred             hhhhhhhhHHHhcCcHHH----HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ..+...|..++..|++.+    |+..|++++...|.+.               .++.++|.++.++|++++|+..+++++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445667888899999985    7899999998877543               337788999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      .++|+++.+++.+|.+|..+|++++|+..|++++..+|++......+..+
T Consensus       312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            99999988899999999999999999999999998888875444333333

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.64  E-value=6.1e-07  Score=106.52  Aligned_cols=127  Identities=20%  Similarity=0.212  Sum_probs=102.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+++.|++++|+..|+++++..+...... .....+......+..++|.++++.+++++|+..|+++++++
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45567888999999999999999999998876543211 11111222233445677999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      |++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987766666553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.63  E-value=8e-07  Score=95.88  Aligned_cols=134  Identities=14%  Similarity=0.173  Sum_probs=88.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+..+||.+|.+|++++|.+.+..+|+..+.....               |..+|.||-.+|+.++|+...-.|--++
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~a---------------y~tL~~IyEqrGd~eK~l~~~llAAHL~  203 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIA---------------YYTLGEIYEQRGDIEKALNFWLLAAHLN  203 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhh---------------HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            6788899999999999999999999999998876544               6666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      |++..-|.++|.....+|+++.|+-+|.+|++.+|.|....-....+.++.++.. .....|.++|...+
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK-RAMETFLQLLQLDP  272 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH-HHHHHHHHHHhhCC
Confidence            6666666666666666666666666666666666666544444444444443332 23345555555443

>PLN02789 farnesyltranstransferase

Probab=98.61  E-value=8.1e-07  Score=89.33  Aligned_cols=115  Identities=13%  Similarity=-0.032  Sum_probs=94.5

Q ss_pred             HhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH--HHHHHHHHHHh
Q 008400          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL  475 (567)
Q Consensus       399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~--~~Ai~~~~~al  475 (567)
                      ...+..+|..+.+.+ ++++|+..+.+++...+.+..               ++++++.+..++++.  .+++..++++|
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---------------aW~~R~~~l~~l~~~~~~~el~~~~kal  135 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---------------IWHHRRWLAEKLGPDAANKELEFTRKIL  135 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---------------HhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            445566677777666 578888888888877665443               388888888888874  78899999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      +.+|.|..||..|+.++..+++|++|++++.++++++|.|..++.....+...
T Consensus       136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998888877766443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.60  E-value=8.1e-07  Score=85.97  Aligned_cols=125  Identities=11%  Similarity=0.065  Sum_probs=100.3

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--------cCHHHHHHHH
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC  471 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--------~~~~~Ai~~~  471 (567)
                      ..+...|..+++.|+|++|+..|+++++..|.+...            ..+++++|.|+.++        +++..|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            346778999999999999999999999988865532            12367888888876        8999999999


Q ss_pred             HHHhccCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Q 008400          472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKE  531 (567)
Q Consensus       472 ~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~  531 (567)
                      ++++..+|++..++                 +.+|.+|+..|++++|+..|+++++..|+++   .++..+..+...+++
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999986432                 4678899999999999999999999988753   566666666666665


Q ss_pred             HHHHH
Q 008400          532 YNKKE  536 (567)
Q Consensus       532 ~~~~e  536 (567)
                      ..+..
T Consensus       219 ~~~A~  223 (235)
T TIGR03302       219 KDLAQ  223 (235)
T ss_pred             HHHHH
Confidence            54433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.59  E-value=6.2e-07  Score=78.84  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=84.3

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      ..+.+|.-++..|++++|.+.++.+..+||.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++.....++.|.-.+
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHhhHh
Q 008400          530 KEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       530 ~~~~~~e~~~~~~~f~~  546 (567)
                      ++..... +.|+...+.
T Consensus       117 G~~~~A~-~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAI-KALKAVVRI  132 (157)
T ss_pred             CCHHHHH-HHHHHHHHH
Confidence            7666443 445544444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.59  E-value=1.1e-07  Score=94.82  Aligned_cols=132  Identities=19%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+.+.|++++|++.|++|++..|.+..               +..+++.++...|+++++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------------ARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            455678889999999999999999999999886443               26678888889999999888888888887


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |.++..+..+|.+|..+|++++|+.+|+++++.+|+|..+...+..+....+..+++. ..+++.+..
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~  277 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL  277 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            8888899999999999999999999999999999999999999888877766665433 344444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.58  E-value=1e-06  Score=84.00  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=99.9

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+.+.+..+++.|+|..|...|...++..|.....            ..+++-||.|++.+|+|+.|...|..+.+-.|
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            338889999999999999999999999998876532            34589999999999999999999999999888


Q ss_pred             CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      .+   +.++|.+|.+...+++-++|...|+++++-.|+...+......+
T Consensus       210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            76   56799999999999999999999999999999997665544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.56  E-value=6.7e-07  Score=98.64  Aligned_cols=106  Identities=10%  Similarity=-0.090  Sum_probs=97.2

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      ..+.+......+..+++.+++++|+..+++++...|++...               ++++|.|..++|+|++|+..|+++
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHH
Confidence            34456778899999999999999999999999998876654               889999999999999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +.-+|++++++..+|.++..+|+.++|...|++|++....-
T Consensus       181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999986554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.54  E-value=6.8e-07  Score=101.47  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=100.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+...|++.+|+..|++++...|.+...               +.+++.++...+++.+|+..+++++..+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY---------------QRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3447788899999999999999999999987755432               6799999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      |++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999999999888777666543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.53  E-value=1.8e-06  Score=90.21  Aligned_cols=66  Identities=23%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      .+.++|.++++++++++|+..++++++.+|++..+++.+|.+|...|++++|++.|+++++.+|.+
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            355666666677777777777777777667666677777777777777777777777777666655

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.53  E-value=7.4e-07  Score=105.81  Aligned_cols=113  Identities=22%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~  482 (567)
                      ...|..+++.|++++|+..|++++...+.+..               +++++|.++..+|++++|+..|+++++++|.+.
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~---------------a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSY---------------AVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            35577777777777777777777777554321               255666666666666666666666666666665


Q ss_pred             HHHHHHH------------------------------------------HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400          483 KALYRRA------------------------------------------QAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (567)
Q Consensus       483 ka~~~~a------------------------------------------~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~  520 (567)
                      .++..++                                          .++...|++++|+..|+++++++|++..+..
T Consensus       420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~  499 (1157)
T PRK11447        420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY  499 (1157)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5443332                                          2233456666666666666666666655555


Q ss_pred             HHHHHHHHHH
Q 008400          521 EYKTLKEKMK  530 (567)
Q Consensus       521 ~l~~~~~~~~  530 (567)
                      .+..+....+
T Consensus       500 ~LA~~~~~~G  509 (1157)
T PRK11447        500 RLAQDLRQAG  509 (1157)
T ss_pred             HHHHHHHHcC
Confidence            5554444333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.53  E-value=1.4e-06  Score=69.62  Aligned_cols=84  Identities=35%  Similarity=0.442  Sum_probs=75.1

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +++++|.++...+++++|+..+.++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..+...+..+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999987776676666555


Q ss_pred             HHHH
Q 008400          530 KEYN  533 (567)
Q Consensus       530 ~~~~  533 (567)
                      ++..
T Consensus        82 ~~~~   85 (100)
T cd00189          82 GKYE   85 (100)
T ss_pred             HhHH
Confidence            5443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.52  E-value=1.2e-06  Score=101.24  Aligned_cols=118  Identities=25%  Similarity=0.310  Sum_probs=91.7

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|.+++...+....               ++..+|.+++..+++++|+..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566788999999999999999999999987765432               266778888888888888888888888


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      .+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...+..+....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  240 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEA  240 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            88888888888888888888888888888888888888766655555544333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN02789 farnesyltranstransferase

Probab=98.51  E-value=1.5e-06  Score=87.45  Aligned_cols=121  Identities=11%  Similarity=0.082  Sum_probs=102.9

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhccCCCCHHHHHH
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR  487 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~~~ka~~~  487 (567)
                      +...+.+++|+..+.++|.+.|.+.               +++++++.|..+++ ++++++..++++++.+|++..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            5567889999999999999887654               34889999999998 6899999999999999999999999


Q ss_pred             HHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       488 ~a~a~~~l~~~--~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |+.++..+++.  ++++.+++++++++|+|..++...+.+...++..+ .+-+.+.++.+
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~-eeL~~~~~~I~  170 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE-DELEYCHQLLE  170 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence            99999999874  78899999999999999999998888877776654 34455555544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.50  E-value=1.8e-06  Score=90.15  Aligned_cols=101  Identities=18%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..+++.|++++|+..|.++++..+...               .+++.+|.+|.++|++++|+..+++++..+|.
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCV---------------RASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            345667777778888888888888877654322               12455666666666666666666666665555


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          481 N-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       481 ~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      + ..++..++.+|..+|++++|+..++++++.+|++.
T Consensus       247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            4 34455556666666666666666666666666553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.48  E-value=1.2e-06  Score=90.04  Aligned_cols=85  Identities=31%  Similarity=0.356  Sum_probs=76.4

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +...|..++..++|..|+..|+++|+++|++..+|+++|.+|+.+|++++|+.++++|++++|++..+...++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999999999999999999999999999999999999999888888877766665


Q ss_pred             HHHHH
Q 008400          531 EYNKK  535 (567)
Q Consensus       531 ~~~~~  535 (567)
                      +..++
T Consensus        85 ~~~eA   89 (356)
T PLN03088         85 EYQTA   89 (356)
T ss_pred             CHHHH
Confidence            55543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.48  E-value=4.8e-07  Score=92.21  Aligned_cols=65  Identities=17%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka---~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      ...++|+|.+|+++++|++|+..|++||+++|++..+   ||++|.||..+|++++|+.+|++|+++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4458999999999999999999999999999999865   9999999999999999999999999983

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.47  E-value=2.9e-07  Score=72.30  Aligned_cols=67  Identities=24%  Similarity=0.268  Sum_probs=58.0

Q ss_pred             HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD----SR---NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~----p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      +....+++|+|.+|..+|+|++|+.++++++.+.    +.   ...+++++|.+|..+|++++|++.+++|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3456789999999999999999999999999752    12   2678999999999999999999999999986

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=3.1e-07  Score=93.24  Aligned_cols=114  Identities=23%  Similarity=0.112  Sum_probs=100.8

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---cCHHHHHH
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEK  469 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~  469 (567)
                      .+....++..+.+||..|..+....|+..|.+++...+.               .+.+|.|+|.+++|.   ++.-.|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHHH
Confidence            566788999999999999999999999999999987654               345599999999996   48889999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      +|..||+++|...||+|+++.|+..++.+.+|+.+...+....|.+.+....
T Consensus       433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~  484 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF  484 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence            9999999999999999999999999999999999999888888877544433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.46  E-value=3.4e-06  Score=88.97  Aligned_cols=149  Identities=22%  Similarity=0.221  Sum_probs=117.9

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      +..+..++..|..|...++|.+|+..|++|+.+........       +......+.|||..|.+.|+|.+|..+|++|+
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            34455666899999999999999999999999877544322       24566779999999999999999999999998


Q ss_pred             ccCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          476 DLDS--------RNVKALYRRAQAYIQMADLDLAEFDIKKALEID-----PDN---RDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       476 ~~~p--------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~n---~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      ++-.        .-...+.+.+.++..++++++|...|.+++++-     ++|   ..++..|+.+....+++++++ .+
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~  389 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL  389 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence            7632        225678899999999999999999999999873     334   346677777888888777655 58


Q ss_pred             HHHhhHhhhhccc
Q 008400          540 YGNMFAKMKSRAQ  552 (567)
Q Consensus       540 ~~~~f~~~~~~~~  552 (567)
                      |++...++.....
T Consensus       390 ~k~ai~~~~~~~~  402 (508)
T KOG1840|consen  390 YKKAIQILRELLG  402 (508)
T ss_pred             HHHHHHHHHhccc
Confidence            8888877654444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.46  E-value=2.1e-06  Score=99.05  Aligned_cols=114  Identities=19%  Similarity=0.164  Sum_probs=78.5

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|+|++|+..|.+++...+...                .+.+++.++.++|++++|+..+++++..+|+
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  768 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ----------------NAIKLHRALLASGNTAEAVKTLEAWLKTHPN  768 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            345678888899999999999999988755431                2455666677777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +..+++.+|.+|..+|++++|+..|+++++.+|++..+...+..+....+
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  818 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK  818 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            77777777777777777777777777777777766655555555444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.44  E-value=2.4e-06  Score=72.69  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=79.3

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK  523 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n---~~~~~~l~  523 (567)
                      .++++|..+.+.+++++|+..|.+++..+|++   ..+++.+|.++...++++.|+..|++++..+|++   ..+...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            47899999999999999999999999999876   6899999999999999999999999999999986   34555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          524 TLKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       524 ~~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                      .+....++..+ ..+.|..+......
T Consensus        84 ~~~~~~~~~~~-A~~~~~~~~~~~p~  108 (119)
T TIGR02795        84 MSLQELGDKEK-AKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHhCChHH-HHHHHHHHHHHCcC
Confidence            66554444333 33566666665443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.44  E-value=2.3e-06  Score=78.23  Aligned_cols=110  Identities=12%  Similarity=0.022  Sum_probs=87.8

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---  481 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---  481 (567)
                      +.+.+|-.+.|..+...+...++...             ......+++++|.++..+++|++|+..+.+++.+.|++   
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~   71 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR   71 (168)
T ss_pred             cccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence            34566666777777777754443211             12356678999999999999999999999999887663   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      +.+++++|.+|..+|++++|+..|++|++++|.+......+..+..
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999877766666655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=4.6e-07  Score=90.33  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=102.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+.++||..|..|+|+.|.+.|+.||.-...               ...+++|++..+-++|+.++|+.++-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---------------c~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDAS---------------CTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchH---------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999965332               34458899999999999999999998876666


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      -+|+..++.+|.+|..+.+...|+++|-++-.+-|+++.+...|..+..+.....
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence            6889999999999999999999999999999999999999888888766544433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.43  E-value=2.5e-07  Score=69.88  Aligned_cols=64  Identities=20%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~  482 (567)
                      ..|..+++.|+|++|+..|+++++..|.+.               .+++.+|.|+..+|++++|+..++++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578999999999999999999998876533               4589999999999999999999999999999875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=1.1e-06  Score=80.02  Aligned_cols=110  Identities=20%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             CCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHH
Q 008400          389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (567)
Q Consensus       389 ~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai  468 (567)
                      .++.++   +|.-+.++|+.+=.-|-+.-|...|.+++.+.|..+.               +++.+|.-+...++|+.|.
T Consensus        58 ~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------------vfNyLG~Yl~~a~~fdaa~  119 (297)
T COG4785          58 ALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------------VFNYLGIYLTQAGNFDAAY  119 (297)
T ss_pred             cCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------------HHHHHHHHHHhcccchHHH
Confidence            445544   4777889998888889999999999999998876554               3888999999999999999


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      +.++.++++||.+.-|..|||.+++.-|+|.-|..++.+-.+-||+++
T Consensus       120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         120 EAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            999999999999999999999999999999999999999999999986

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.41  E-value=1.1e-06  Score=93.42  Aligned_cols=103  Identities=23%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH--HHHHHhc
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD  476 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~--~~~~al~  476 (567)
                      +..+..+|..+..+|++.+|...|..|+.+.|.+...               ...+|.|+++.|+..-|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            4556777777788888888888888888887766543               5678888888887777777  7888888


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      +||.|++|||.+|.++..+|+.+.|.++|..|+++++.++
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            8888888888888888888888888888888888887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.38  E-value=3e-06  Score=96.21  Aligned_cols=106  Identities=11%  Similarity=0.055  Sum_probs=96.1

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .....|..+...|++++|+..|++++...|.+.               .+++++|.++..+|++++|+..+++++.++|+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd  425 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEPR  425 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence            345678888899999999999999999877654               24889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      +..+++.+|.+++.++++++|+..++++++..|+|..+...
T Consensus       426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999999999999999999765443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.37  E-value=5.1e-06  Score=90.46  Aligned_cols=118  Identities=24%  Similarity=0.248  Sum_probs=102.7

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+.-.++-+|-.|+|..+...+..|+....            ........++++|.||..+|+|++|..+|.+++..++
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            3445567778888999999988888886532            2234555689999999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          480 RN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       480 ~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      ++ .-+++.+|+.|+..|+++.|+.+|+++++..|+|.+....|+.+....
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            98 899999999999999999999999999999999999999999887766

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=5.4e-06  Score=84.30  Aligned_cols=131  Identities=15%  Similarity=0.030  Sum_probs=109.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      ......++...|..|+++.|...+...+...|.+..+               ..-++.++++.++..+|++.+++++.++
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~  370 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALD  370 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            3445667778888899999998888877776655533               5567889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      |+..-..+++|.+|++.|++.+|+..++..+.-+|+|...+..|.+....+++..+.....-..+|
T Consensus       371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887766655544444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.36  E-value=2.2e-06  Score=78.68  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  522 (567)
                      ....+++++|.++...|++++|+.+|++++...|+.   ..+++++|.+|..+|++++|+..|+++++++|++......+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345568999999999999999999999999887653   57999999999999999999999999999999998777766


Q ss_pred             HHHHHHH
Q 008400          523 KTLKEKM  529 (567)
Q Consensus       523 ~~~~~~~  529 (567)
                      ..+...+
T Consensus       113 g~~~~~~  119 (172)
T PRK02603        113 AVIYHKR  119 (172)
T ss_pred             HHHHHHc
Confidence            6665444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.35  E-value=6.4e-07  Score=68.22  Aligned_cols=67  Identities=33%  Similarity=0.383  Sum_probs=58.3

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~  488 (567)
                      +++.|+|++|++.|++++...|.+..               +++++|.||+++|++++|...+++++..+|+++.++.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE---------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH---------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            47889999999999999999886543               378999999999999999999999999999988877766


Q ss_pred             HH
Q 008400          489 AQ  490 (567)
Q Consensus       489 a~  490 (567)
                      |+
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.34  E-value=2.2e-06  Score=67.25  Aligned_cols=73  Identities=25%  Similarity=0.310  Sum_probs=61.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+.+.|..++..|+|++|+..|++|+.+......        .......++.|+|.||..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            46778899999999999999999999999998443322        1234577899999999999999999999999987


Q ss_pred             c
Q 008400          477 L  477 (567)
Q Consensus       477 ~  477 (567)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            5

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=6.1e-06  Score=79.66  Aligned_cols=115  Identities=19%  Similarity=0.144  Sum_probs=96.7

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---cCHHHHHHHHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKV  474 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~~~~~a  474 (567)
                      .++.+.-.|..++..|++..|...|.+|+++.+.+...               +.-+|.+++..   ..-.++...++++
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~a  219 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQA  219 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            35677889999999999999999999999998876643               44555554443   3577899999999


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      |.+||+|+.+++.+|..++..|+|.+|...++..+++.|.+..-+..+.+...
T Consensus       220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia  272 (287)
T COG4235         220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA  272 (287)
T ss_pred             HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999998766666655433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=6.8e-06  Score=73.06  Aligned_cols=93  Identities=22%  Similarity=0.209  Sum_probs=43.4

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~  482 (567)
                      ...|..++..|+|++|+..|+.++...+.            ..+...+.+++|.+++.+++|++|+..++.+ .-.+-.+
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~  118 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKA  118 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHH
Confidence            34445555555555555555555543210            0122333445555555555555555555332 1122233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKA  508 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (567)
                      .++..+|.+|...|++++|+..|++|
T Consensus       119 ~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  119 LAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            44445555555555555555555544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.30  E-value=4.5e-06  Score=74.43  Aligned_cols=99  Identities=22%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc----------cCHHHHHHHHHHHhccCCCCHHH
Q 008400          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA  484 (567)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~----------~~~~~Ai~~~~~al~~~p~~~ka  484 (567)
                      |+.|.+.|+.+....|.+...               ++|-|.+++.+          ..+++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            567777777777766654321               44444444443          45788999999999999999999


Q ss_pred             HHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       485 ~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      ++.+|.||..++.           |++|..+|++|..++|+|...+..|....+.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            9999999998865           7899999999999999999888888776543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.28  E-value=8.8e-06  Score=91.57  Aligned_cols=151  Identities=13%  Similarity=0.024  Sum_probs=108.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-----------C--hHHHHHHHHH------HHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----------G--DEEKKQAKAL------KVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~--~e~~~~~~~~------~~~~~~nla~~~~  459 (567)
                      +.....++...+++|+|..|+..|.++++..|.....           .  ++-....+..      ....+..+|.+|.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            4567888899999999999999999999988875311           0  0111111111      1223344477888


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      .+|+|++|+..|+++++.+|+++.+++-++.+|...+++++|+..++++...+|.+... ..+..+.....+.. +....
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHH
Confidence            99999999999999999999999999988999999999999999999999999997654 33344433322222 36678


Q ss_pred             HHHhhHhhhhcc
Q 008400          540 YGNMFAKMKSRA  551 (567)
Q Consensus       540 ~~~~f~~~~~~~  551 (567)
                      |++++...+...
T Consensus       192 ~ekll~~~P~n~  203 (822)
T PRK14574        192 SSEAVRLAPTSE  203 (822)
T ss_pred             HHHHHHhCCCCH
Confidence            888887754433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=2.5e-06  Score=82.08  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      ..+++|+|.|++-.++++-++..+.+|+..-.   .-...|||+|.+....|++.-|..+|+-||..||++.++...|..
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav  437 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV  437 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence            34699999999999999999999999988643   236889999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008400          525 LKEKMKEYNKKEAKFYGNMFAKMKSRAQG  553 (567)
Q Consensus       525 ~~~~~~~~~~~e~~~~~~~f~~~~~~~~~  553 (567)
                      ++.+...... .+..+...-+.+..+.+.
T Consensus       438 L~~r~G~i~~-Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  438 LAARSGDILG-ARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             HHhhcCchHH-HHHHHHHhhhhCcccccc
Confidence            8776655543 334555444444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.26  E-value=4.4e-06  Score=64.55  Aligned_cols=70  Identities=23%  Similarity=0.301  Sum_probs=62.7

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~  485 (567)
                      .+.++.+++|+.|++.+++++.+.|.+...               +.++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            357889999999999999999998876655               88999999999999999999999999999998887


Q ss_pred             HHHHH
Q 008400          486 YRRAQ  490 (567)
Q Consensus       486 ~~~a~  490 (567)
                      ..++.
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            66554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=3.1e-06  Score=89.53  Aligned_cols=131  Identities=17%  Similarity=0.257  Sum_probs=107.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +.+.+..|+-.+.+++|.+|.+++++++++.+-.               ...|++++.|++++++++.|.++|.+++.++
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            3344555666677799999999999999886643               3449999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |+|..+|.|++.+|+.+++-.+|...++.|++.+-+|..++..+-.+........+ ..+.|.++..
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed-a~~A~~rll~  615 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED-AIKAYHRLLD  615 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH-HHHHHHHHHH
Confidence            99999999999999999999999999999999998887777777666665555543 2345555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.25  E-value=8.3e-06  Score=76.79  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      .-++..++..|+|..|+..+.++..++|+++++|.-+|.+|.++|++++|...|.+|+++.|+++.+...+....-...+
T Consensus       104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd  183 (257)
T COG5010         104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD  183 (257)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence            34888899999999999999999999999999999999999999999999999999999999999998888877666655


Q ss_pred             HHHHHH
Q 008400          532 YNKKEA  537 (567)
Q Consensus       532 ~~~~e~  537 (567)
                      .+..++
T Consensus       184 ~~~A~~  189 (257)
T COG5010         184 LEDAET  189 (257)
T ss_pred             HHHHHH
Confidence            554443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=1.2e-05  Score=83.29  Aligned_cols=88  Identities=10%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..++.-||..|...++|++|+++++.||..+|++...|.|+|..+..-.+..+|+..|++||+|.|..-.++..++..--
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence            34677889999999999999999999999999999999999999999999999999999999999999777777776666


Q ss_pred             HHHHHHHH
Q 008400          528 KMKEYNKK  535 (567)
Q Consensus       528 ~~~~~~~~  535 (567)
                      .++.++++
T Consensus       510 NlG~ykEA  517 (579)
T KOG1125|consen  510 NLGAYKEA  517 (579)
T ss_pred             hhhhHHHH
Confidence            66666543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1.2e-05  Score=87.71  Aligned_cols=141  Identities=20%  Similarity=0.220  Sum_probs=113.4

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      +-+.+.|..+|..|++..|..+|.+|+..+......  ++.   +...++.-+|+|.|.-.++++..|...|..++...|
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp  527 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP  527 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence            457788999999999999999999999874321111  111   234466789999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ....+|.|+|......++..+|..+++.++.++..|++++.+++.+.....+.... ++.|..++++
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a-~k~f~~i~~~  593 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA-KKKFETILKK  593 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc-ccHHHHHHhh
Confidence            99999999997777889999999999999999999999999999886665544432 2334444443

>TIGR00115 tig trigger factor

Probab=98.19  E-value=4.7e-06  Score=87.52  Aligned_cols=84  Identities=17%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      .+..||.|+++|.+.. +|+.++++  .+..|.+|.+.+++||+++|.||+.|+++++.+|....|+..+          
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----------  214 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----------  214 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----------
Confidence            4678999999999977 88888865  7889999999999999999999999999999998555676443          


Q ss_pred             CCCCeEEEEEEeecccc
Q 008400          246 PPNATLQIALELVSWKT  262 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (567)
                      .++.++.|.|++.++..
T Consensus       215 ~~gk~~~f~v~i~~I~~  231 (408)
T TIGR00115       215 LAGKEATFKVTVKEVKE  231 (408)
T ss_pred             CCCCeEEEEEEEEEecc
Confidence            36889999999998754

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.17  E-value=1.5e-05  Score=79.44  Aligned_cols=141  Identities=22%  Similarity=0.294  Sum_probs=101.4

Q ss_pred             HHHhhhhhhhhHHHhc-CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ..|..+.+.|..+... +++++|+..|++|+.+......         ......++.++|.++.++++|++|+..|+++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3467778888888888 8999999999999999775442         24456778899999999999999999999997


Q ss_pred             ccCCC------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          476 DLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       476 ~~~p~------~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      ...-+      +++ .+++.+.|++..|++..|...|++....+|.-.. ..+...+...+...+..+...|.......
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~  260 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAVAEY  260 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            64321      233 4678889999999999999999999999996532 23333445555556555555555544433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=8.5e-05  Score=69.61  Aligned_cols=122  Identities=20%  Similarity=0.168  Sum_probs=92.8

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHHH------HHHHHhhHHHHHHhccCH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKAL------KVACNLNNAACKLKLKDY  464 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~~------~~~~~~nla~~~~k~~~~  464 (567)
                      -.|..+-..|+|++|++.|.+.+.-.|.+...             +-+-...+..+      -..++..+|..|+.+++|
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence            34555666889999999999988776654422             11222222222      244788999999999999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       465 ~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      .+|.-++++++-+.|.|+-.+.|+|..++.+|   ++.-|++.|.+|++++|.|..+...+-.|
T Consensus       171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            99999999999999999999999999998887   57789999999999999775444433333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.13  E-value=4.5e-05  Score=64.84  Aligned_cols=98  Identities=18%  Similarity=0.005  Sum_probs=83.4

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+.+.|..+-..|+.++|+..|++|+......            ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            45678888889999999999999999752211            234456889999999999999999999999998787


Q ss_pred             ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       481 ---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                         +......++.++..+|++++|+.++-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               778888899999999999999999988875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.12  E-value=6.5e-05  Score=76.64  Aligned_cols=110  Identities=19%  Similarity=0.139  Sum_probs=94.5

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      ..+..+++.++..+|++.+++++...|....               +..|+|.++++.|++.+|+..+++.+.-+|+++.
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNSPL---------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            4677889999999999999999999887543               3789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      .|..+|++|..+|+-.+|...+-..+.+.-+-..+...+.+++++
T Consensus       410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999999999998888888888888876665555555555444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.12  E-value=4.2e-05  Score=85.46  Aligned_cols=128  Identities=15%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc--
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--  477 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~--  477 (567)
                      ..+......+...+++++|++....++...|....+               |+.+|..+++.+++..|...  .++..  
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            344455566778899999999999998887765544               44444444444443333332  22222  


Q ss_pred             -----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          478 -----------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (567)
Q Consensus       478 -----------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~  540 (567)
                                       .+.+-.|++.+|.||-.+|++++|.+.|+++|+++|+|..+...++......  ..++...++
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~  172 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYL  172 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHH
Confidence                             2334467777777777777777777777777777777777776666654444  333444455


Q ss_pred             HHhhHh
Q 008400          541 GNMFAK  546 (567)
Q Consensus       541 ~~~f~~  546 (567)
                      ++.+..
T Consensus       173 ~KAV~~  178 (906)
T PRK14720        173 KKAIYR  178 (906)
T ss_pred             HHHHHH
Confidence            555544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.11  E-value=4.8e-06  Score=66.39  Aligned_cols=76  Identities=30%  Similarity=0.410  Sum_probs=65.4

Q ss_pred             ccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008400          461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (567)
Q Consensus       461 ~~~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~  537 (567)
                      +++|+.|+..++++++.+|.  +...++++|.||+.+|+|++|+..+++ ++.+|.+..+.-.+++|.-.+++.+++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  467888999999999999999999999 89999998888888888888877776543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.10  E-value=4.6e-05  Score=80.52  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=102.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-  477 (567)
                      .......|..++.+|+|+.|+..|++|++.+......       ..........++|..|..+++|.+|+..|++||.+ 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3444558999999999999999999999986543321       12233444557999999999999999999999875 


Q ss_pred             -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 008400          478 -------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-----PDNRDVKLEYKTLKEK---MKEYNKKEAKFYGN  542 (567)
Q Consensus       478 -------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~n~~~~~~l~~~~~~---~~~~~~~e~~~~~~  542 (567)
                             +|.-..++.++|.+|...|+|++|..++++|+++-     ....++...+..+...   ..+.++ ....|++
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee-a~~l~q~  350 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE-AKKLLQK  350 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH-HHHHHHH
Confidence                   34446789999999999999999999999999874     3344555555544332   233322 2345555


Q ss_pred             hhHhhh
Q 008400          543 MFAKMK  548 (567)
Q Consensus       543 ~f~~~~  548 (567)
                      .++...
T Consensus       351 al~i~~  356 (508)
T KOG1840|consen  351 ALKIYL  356 (508)
T ss_pred             HHHHHH
Confidence            555444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.06  E-value=4.5e-05  Score=85.99  Aligned_cols=111  Identities=8%  Similarity=-0.021  Sum_probs=89.8

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~  485 (567)
                      |..+...|+|++|+..|+++++..|.+...               +.-++..|...+++++|+..+++++..+|.+... 
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence            445556799999999999999998876432               5577899999999999999999999999986554 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      ..++.++..++++.+|+..|+++++++|+|.++...+-.+....+..
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            44566666678887799999999999999988877777665555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.06  E-value=6.6e-06  Score=53.07  Aligned_cols=34  Identities=41%  Similarity=0.614  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3677888888888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.05  E-value=7.3e-05  Score=76.99  Aligned_cols=116  Identities=11%  Similarity=-0.010  Sum_probs=91.9

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------Ch--HH-HHHH------HHHHHHHHhhHHHHH
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EE-KKQA------KALKVACNLNNAACK  458 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--e~-~~~~------~~~~~~~~~nla~~~  458 (567)
                      ...-+|..++..|++.+|+..+.+++...|.+...             ..  .. ....      ......++.++|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            34467888999999999999999999887654310             00  00 0000      011233556889999


Q ss_pred             HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ..+|++++|+..++++++++|+++.++..+|.+|+..|++++|+..+++++...|.+.
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            9999999999999999999999999999999999999999999999999999987543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK01490 tig trigger factor; Provisional

Probab=98.05  E-value=1.4e-05  Score=84.71  Aligned_cols=84  Identities=15%  Similarity=0.283  Sum_probs=71.1

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      .+..||.|+++|.+.. +|+.++..  .+..|.+|.+.+++||+++|.||+.|+++.|.++....|+...          
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----------  225 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----------  225 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----------
Confidence            4689999999999998 78888765  7889999999999999999999999999999986444665432          


Q ss_pred             CCCCeEEEEEEeecccc
Q 008400          246 PPNATLQIALELVSWKT  262 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (567)
                      -++.++.|.|.+.++..
T Consensus       226 lagk~~~f~v~v~~V~~  242 (435)
T PRK01490        226 LAGKEATFKVTVKEVKE  242 (435)
T ss_pred             CCCCeEEEEEEEEEecc
Confidence            26788999999998754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.04  E-value=0.00016  Score=64.17  Aligned_cols=110  Identities=18%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-------CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      .+...|......++...++..+.+++.+.....       .+........+.....+...++.++...|+++.|+..|.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            344556677778899999999999999865432       2223456677788888999999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      ++..+|.+..++..+-.+|..+|+..+|+..|+++.+
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.03  E-value=4.2e-05  Score=74.67  Aligned_cols=103  Identities=13%  Similarity=0.101  Sum_probs=80.4

Q ss_pred             HHHhhHHHHH-HhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008400          449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE  521 (567)
Q Consensus       449 ~~~~nla~~~-~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~  521 (567)
                      ...++.|.++ ++.++|++|+..|+..+...|++   +.++|++|.+|+..|+|++|+..|+++++..|++.   ++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3467788876 66899999999999999999988   58999999999999999999999999999999864   44444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008400          522 YKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ  552 (567)
Q Consensus       522 l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~  552 (567)
                      +..+...+++ ..+..+.|+++.........
T Consensus       223 lg~~~~~~g~-~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        223 VGVIMQDKGD-TAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHHCcCCHH
Confidence            4555544433 33455677777776665544

>TIGR00540 hemY_coli hemY protein

Probab=98.02  E-value=0.00012  Score=76.99  Aligned_cols=124  Identities=18%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      +.+.+.....+|-..+..|+|..|.+...++.+..+...               ..+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~---------------~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV---------------LNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            556788888999999999999999999999887654321               11344556666666666666666666


Q ss_pred             hccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       475 l~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      .+..|++. .+...++..++..|+++.|+..+++.++..|+|..+...+..+....++..
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            66666553 333445666666666666666666666666666666555555554444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.01  E-value=1.2e-05  Score=80.08  Aligned_cols=132  Identities=20%  Similarity=0.182  Sum_probs=95.4

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+......++..+++.++...+.++.......             ....++..+|.++.+.|++++|+..++++|+++|
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P  177 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAP-------------DSARFWLALAEIYEQLGDPDKALRDYRKALELDP  177 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            334445566778899999999998877432211             1234578899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      ++..++..++.++...|++++|...++...+..|.|......+..+...+++.++ ....|.+...
T Consensus       178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~-Al~~~~~~~~  242 (280)
T PF13429_consen  178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE-ALEYLEKALK  242 (280)
T ss_dssp             T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc-cccccccccc
Confidence            9999999999999999999999999999998888888788888888777766553 3345555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.00  E-value=7e-05  Score=80.38  Aligned_cols=118  Identities=17%  Similarity=0.051  Sum_probs=88.3

Q ss_pred             HhhhhhhhhHHHhcC---cHHHHHHHHHHHHHhhhccCCC--------------C---hHHHHHHHHH------------
Q 008400          399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------  446 (567)
Q Consensus       399 a~~~~~~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~--------------~---~e~~~~~~~~------------  446 (567)
                      |-.+.-+|..++.++   .+..|+.+|++|++..|.....              .   +.........            
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            334455555555543   4889999999999987764211              1   1111111111            


Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      ...+|.-+|..+...|++++|...+++|+.++| +..+|..+|+++...|++++|++.|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            114566788888899999999999999999999 5789999999999999999999999999999999763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.00  E-value=0.00014  Score=76.31  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      -+.+.+.....+|-..+..|+|+.|.+...++-+..+. .              ...+...|....++|+++.|..++.+
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p--------------~l~~llaA~aA~~~g~~~~A~~~l~~  143 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P--------------VVNYLLAAEAAQQRGDEARANQHLER  143 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h--------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35567888889999999999999999777665543211 0              11133445555888888888888888


Q ss_pred             HhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       474 al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      +.+.+|++. -.....+..++..|++++|+..++++++.+|+|..+...+..+....++..
T Consensus       144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            888888874 344455888888888888888888888888888887777777766555444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.00013  Score=70.68  Aligned_cols=143  Identities=19%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             cCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc----------cCCCChHHHHH--------------H
Q 008400          388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY----------DTSFGDEEKKQ--------------A  443 (567)
Q Consensus       388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~----------~~~~~~e~~~~--------------~  443 (567)
                      .+++.+++   ...+.+.|..|+..|-|+.|...|....+.-..          ....+.+..+.              .
T Consensus        99 pdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~  175 (389)
T COG2956          99 PDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY  175 (389)
T ss_pred             CCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence            34555554   455678889999999999999888765542111          00011111111              1


Q ss_pred             HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 008400          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEY  522 (567)
Q Consensus       444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~-~~~~~l  522 (567)
                      .-.....|+.+|..+....+.+.|+....+|++.||+++.|-..+|.+++..|+|..|++.++.+++.||+.. ++...|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            1234567888999998999999999999999999999999999999999999999999999999999999863 566666


Q ss_pred             HHHHHHHHHHH
Q 008400          523 KTLKEKMKEYN  533 (567)
Q Consensus       523 ~~~~~~~~~~~  533 (567)
                      ..|...+.+-.
T Consensus       256 ~~~Y~~lg~~~  266 (389)
T COG2956         256 YECYAQLGKPA  266 (389)
T ss_pred             HHHHHHhCCHH
Confidence            66666665444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.98  E-value=8.3e-05  Score=76.16  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=62.8

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      ...+.+..+.+.|..|++.|+|++|+..|++||.+.|++...            ..+|+|+|.||.++|++++|+.++.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345568889999999999999999999999999998865421            13489999999999999999999999


Q ss_pred             Hhcc
Q 008400          474 VLDL  477 (567)
Q Consensus       474 al~~  477 (567)
                      |+++
T Consensus       138 ALel  141 (453)
T PLN03098        138 ALRD  141 (453)
T ss_pred             HHHh
Confidence            9997

>TIGR00540 hemY_coli hemY protein

Probab=97.98  E-value=8.8e-05  Score=78.05  Aligned_cols=137  Identities=15%  Similarity=0.063  Sum_probs=106.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      ........|..+...|++++|.+..+++++..+++....           .  ..-+....+..++...+++.++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----------~--~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----------L--PLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----------h--HHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            345566778889999999999999999999877654220           0  112333445568889999999999999


Q ss_pred             CCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          478 DSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       478 ~p~~~--ka~~~~a~a~~~l~~~~~A~~~~~--~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                      +|+++  ..+..+|..++.+|+|++|.+.|+  ++++.+|++.... .+..+...+++.++ .++.|++.+..+..
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l~~~~~  402 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSLGLMLA  402 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHHHHHhc
Confidence            99999  888899999999999999999999  6888999886644 77877777766544 46677776665443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.96  E-value=0.00038  Score=61.82  Aligned_cols=133  Identities=19%  Similarity=0.122  Sum_probs=96.5

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      +...+..........+..+++..+...+...+...+...            ....+.+.+|.+++..|++++|+..++.+
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            445566677777777788899888888888777655432            33455788999999999999999999999


Q ss_pred             hccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          475 LDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG  541 (567)
Q Consensus       475 l~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~  541 (567)
                      +...|+.   ..+.+++|.+++.+|+|++|+..++.. .-.+-...+...++.+....++..+. ++.|+
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A-~~~y~  142 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEA-RAAYQ  142 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHH-HHHHH
Confidence            9987654   568999999999999999999999763 22222334555566665555544432 33444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.95  E-value=7.2e-06  Score=52.80  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF  503 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~  503 (567)
                      .|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.94  E-value=2.7e-05  Score=83.64  Aligned_cols=126  Identities=32%  Similarity=0.467  Sum_probs=108.7

Q ss_pred             ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--cCHHHHH
Q 008400          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAE  468 (567)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--~~~~~Ai  468 (567)
                      +.+.-+.++..++++||.+|..++|..|.-.|..++.+++.+..           ....+..|++.||+.+  ++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhhc
Confidence            55677889999999999999999999999999999999885442           2455688999988875  5999999


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..|.-|+...|...+++++++.+|..++.++-|.+++.-....+|++.++...+.+++.
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999655554444433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.93  E-value=0.00024  Score=77.25  Aligned_cols=100  Identities=19%  Similarity=0.192  Sum_probs=93.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      ...+...|..+-++|+..+|+..+..|..+.+.+...               |..+|....+++++.+|+-+|.+||.++
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~---------------W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL---------------WKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH---------------HHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            4667888999999999999999999999998877644               7778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      |.+.+.+++++..|.++|++..|...|.+.+.++|
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.93  E-value=7.1e-05  Score=78.50  Aligned_cols=117  Identities=15%  Similarity=0.073  Sum_probs=84.1

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .++.+.-.+|..++|...++..+..|...+.....               +.-.|.....+|+-++|..++..+++.|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            45667777888888888888888888755544322               334455666677777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      +.-+|.-+|..+..-.+|++|++||+.||+++|+|..+..-+..++..+++.
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            7777777777777777777777777777777777777776666665555444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=5.7e-05  Score=78.06  Aligned_cols=135  Identities=13%  Similarity=0.076  Sum_probs=93.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC------------ChHHHHH-------HHHHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEEKKQ-------AKALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~e~~~~-------~~~~~~~~~~nla~~~~  459 (567)
                      +..+..-|..+-..++.++|+.+|..|-++.+.....            +.+-.++       +.+.-.-++..+|.+.+
T Consensus       346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            4455566666666666666666666666655432211            0000000       00001123678899999


Q ss_pred             hccCHHHHHHHHHHHhccCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDS-------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p-------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      +.+.|.+|+.++..+|..-+       .+.-.+.++|.++.+++.|++|+..|++||.+.|.+.....-++.+...++..
T Consensus       426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence            99999999999999984221       23345889999999999999999999999999999999888888877766554


Q ss_pred             H
Q 008400          533 N  533 (567)
Q Consensus       533 ~  533 (567)
                      .
T Consensus       506 d  506 (611)
T KOG1173|consen  506 D  506 (611)
T ss_pred             H
Confidence            4

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.93  E-value=2.2e-05  Score=76.24  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ..|.-|+|+|.|++||.+|.+++.++|.|+-.+.+||.||+++..|..|..+|+.|+.|+-..
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            578899999999999999999999999999999999999999999999999999999997555

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.92  E-value=0.00062  Score=64.58  Aligned_cols=128  Identities=20%  Similarity=0.217  Sum_probs=101.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+.+.|...++.|+|.+|++.|+......|.....            -.+.+.++.+++|.++|+.|+.+.++=+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            5678889999999999999999999988776654422            2346788999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHH
Q 008400          479 SRNV---KALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAK  538 (567)
Q Consensus       479 p~~~---ka~~~~a~a~~~l~~--------~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~~e~~  538 (567)
                      |+++   -++|.+|.++...=+        -.+|...|+..+.--|++.   ++...+..++.++...+-.=.+
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar  175 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR  175 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9874   578889998776532        3588899999999999985   6666666666666555543333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=2.4e-05  Score=50.28  Aligned_cols=34  Identities=41%  Similarity=0.560  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +++++.+|.+|..+|+|++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.91  E-value=6.2e-05  Score=77.52  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..+...|++.+|+..|++++...+.+..               ++.++|.+++..|++++|+..+++++...|.
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            3446777889999999999999999998876543               3789999999999999999999999998874


Q ss_pred             CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          481 NV----KALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       481 ~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      ++    ..++.+|.++..+|++++|+..|++++...|
T Consensus       181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            32    4567899999999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=2.2e-05  Score=81.81  Aligned_cols=81  Identities=19%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEe--cCCCccCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV--KPQYGFGEKGKSASGNEGA  244 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~i--p~~~~~g~~~~~~~~~~~~  244 (567)
                      ...||.|+|+|.+.. ||..|...  +.+.+++|+|+++|||+.+|+||+.|+.+.|.+  |.+|  ....         
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy--~a~~---------  225 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDY--HAEE---------  225 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEccccc--chhH---------
Confidence            788999999999966 78777765  889999999999999999999999999999766  5554  3322         


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008400          245 VPPNATLQIALELVSWKT  262 (567)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (567)
                       -.+.+..|.|.+..+..
T Consensus       226 -LaGK~a~F~V~vkeVk~  242 (441)
T COG0544         226 -LAGKEATFKVKVKEVKK  242 (441)
T ss_pred             -hCCCceEEEEEEEEEee
Confidence             35677889999987654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.0002  Score=64.70  Aligned_cols=98  Identities=22%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNV-----KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~-----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      .-|.-+++.|+|.+|...|..||.+.|..+     -.|.++|.|+++++.++.|+.++.+|++|.|.+-.+......+..
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            346677899999999999999999999763     467799999999999999999999999999998433333333444


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhcc
Q 008400          528 KMKEYNKKEAKFYGNMFAKMKSRA  551 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~~~~~~  551 (567)
                      ++.... ..-.-|+++.....+.+
T Consensus       180 k~ek~e-ealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  180 KMEKYE-EALEDYKKILESDPSRR  202 (271)
T ss_pred             hhhhHH-HHHHHHHHHHHhCcchH
Confidence            443222 23446777776655554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.88  E-value=3.2e-05  Score=53.17  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|..++..+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            466777777777777777777777777777777776665543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.87  E-value=0.00011  Score=73.27  Aligned_cols=113  Identities=12%  Similarity=0.166  Sum_probs=92.5

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---ChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      ........|..+|++++|..|+-.|..||+++......   .......+-.+...+...+..||+++++.+.|+...-+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            34445677889999999999999999999998764321   112334455556666789999999999999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      +.++|.+..-++|.|.|+..+.+|.+|...+-.|.-
T Consensus       255 I~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999877665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.84  E-value=0.00035  Score=59.38  Aligned_cols=85  Identities=19%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK  523 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~---n~~~~~~l~  523 (567)
                      +++++|.++-.+|+.++|+..|.+++......   ..++..+|.+|..+|++++|+..+++++.-.|+   +..++..+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            47899999999999999999999999975443   679999999999999999999999999999888   666666655


Q ss_pred             HHHHHHHHHHH
Q 008400          524 TLKEKMKEYNK  534 (567)
Q Consensus       524 ~~~~~~~~~~~  534 (567)
                      .+....++.++
T Consensus        83 l~L~~~gr~~e   93 (120)
T PF12688_consen   83 LALYNLGRPKE   93 (120)
T ss_pred             HHHHHCCCHHH
Confidence            55444444443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00023  Score=70.95  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChH------------H-HHHHHHHHHHH------HhhHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE------------E-KKQAKALKVAC------NLNNAACKLK  460 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e------------~-~~~~~~~~~~~------~~nla~~~~k  460 (567)
                      .-+.+.|..+|..|++.+|+-.|+++..+.++.....++            . ......+....      ++=-+...+.
T Consensus       233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~  312 (564)
T KOG1174|consen  233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD  312 (564)
T ss_pred             HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence            445678899999999999999999999887765432111            1 11111111111      1222334456


Q ss_pred             ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      .++|..|+.+..++++.+|++..+|..+|.++..+++.++|+-.|+.|..+.|...++..-|-.+.-..+.
T Consensus       313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            78999999999999999999999999999999999999999999999999999997777766655444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.80  E-value=5.9e-05  Score=74.97  Aligned_cols=113  Identities=16%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~  472 (567)
                      ..+......+-+.||.||-.|+|++|+..-+.-|++-.....         +.....++.|+|.||.-+++|+.|+++|+
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            455666778889999999999999999988877766432211         11223458999999999999999999999


Q ss_pred             HHhccC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          473 KVLDLD----SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       473 ~al~~~----p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      +++.+.    ..  .+...|.+|.+|.-+.+|++|+.++.+-|.+.-+
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            976542    22  2567899999999999999999999998876533

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.80  E-value=0.00014  Score=51.82  Aligned_cols=48  Identities=25%  Similarity=0.376  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ..+|.+|.+++++|+|++|+..++.+|+++|+|..+..+...+..++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            468899999999999999999999999999999888887777766554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.80  E-value=0.00017  Score=76.97  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      ......+++.+|++|..+|++++|+.++++||+..|+.+..|+.+|++|-+.|++.+|..+++.|.++|+.+.-+.....
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a  269 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCA  269 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence            34466778999999999999999999999999999999999999999999999999999999999999999865444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          524 TLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       524 ~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      +..  ++..+-.++..--.+|.+..
T Consensus       270 Ky~--LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  270 KYL--LRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHH--HHCCCHHHHHHHHHhhcCCC
Confidence            332  33333334444555565533

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00012  Score=70.87  Aligned_cols=98  Identities=18%  Similarity=0.124  Sum_probs=71.9

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      +.|.+|++.|-+.+|.+.++.+|...+.-                ..++.++.+|.+..+...|+..+.+.|..-|.++.
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT  291 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT  291 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence            67889999999999999999999765421                12556677777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      .+.-.|++|..++++++|.+.|+.+++++|.|-+
T Consensus       292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence            7777777777777777777777777777766643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00059  Score=66.13  Aligned_cols=123  Identities=16%  Similarity=0.066  Sum_probs=97.3

Q ss_pred             cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 008400          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI  493 (567)
Q Consensus       414 ~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~  493 (567)
                      +.+..+...+.-|...|.+...               +.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3455556666667777766654               7889999999999999999999999999999999999999988


Q ss_pred             hcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008400          494 QMAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ  552 (567)
Q Consensus       494 ~l~~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~  552 (567)
                      ...+   -.+|...|++|+++||.|..+..+|.......+++.+ ....|..|++.+.....
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCCc
Confidence            8754   5689999999999999998888888776555555543 34577777776655444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.00079  Score=65.36  Aligned_cols=114  Identities=16%  Similarity=0.131  Sum_probs=96.5

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      +...|.-+-+.+..+....+++.|.....+|+...+.+...               -.-+|.+++..|+|..|++.+..+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence            45567778888888888899999999999999887776544               456899999999999999999999


Q ss_pred             hccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          475 LDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       475 l~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      ++-||.. +..+-.+..||..+|+.++.+.++.++.+..++.........
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~  290 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLAD  290 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHH
Confidence            9999987 678889999999999999999999999999887654433333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.75  E-value=0.00012  Score=75.39  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=39.3

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      +...|..+++.++++.|+..++++..+.|.+.++|+.+|.+|..+|+|++|+..++.+--+
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            4455666666666666666666666666666666666666666666666666666554433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.74  E-value=3.5e-05  Score=49.64  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=29.9

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      .+|+++|.||..+++|++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            468999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.73  E-value=0.00018  Score=76.99  Aligned_cols=113  Identities=18%  Similarity=0.162  Sum_probs=97.1

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~  485 (567)
                      +..+.+.++-++|..+..+|-.+.+               +....|+-+|.++...|++.+|...|..|+.+||+++.+.
T Consensus       657 a~~~~~~~~~~~a~~CL~Ea~~~~~---------------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~  721 (799)
T KOG4162|consen  657 ADLFLLSGNDDEARSCLLEASKIDP---------------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM  721 (799)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhcch---------------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence            3344455666777777777766554               3455688999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          486 YRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~--~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      .-+|.+|+..|+-.-|.+  .+..|+++||.|.+++..++.+.+.+++..
T Consensus       722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence            999999999999988888  999999999999999999999988887665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.69  E-value=0.00045  Score=72.38  Aligned_cols=127  Identities=14%  Similarity=0.111  Sum_probs=97.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      .......+..+...|+.++|.+...++++.-+ +.                 ..-+...++..++++++++.+++.++.+
T Consensus       263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~-----------------~l~~l~~~l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DE-----------------RLVLLIPRLKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CH-----------------HHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence            34455668888999999999999999987321 11                 0011223335599999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |+++..++.+|++++..++|++|++.|+++++++|++.. ...+..+.....+.++. ...|++-..
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l~  389 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGLM  389 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999999855 34677777766655543 456665443

>PRK11906 transcriptional regulator; Provisional

Probab=97.69  E-value=0.00034  Score=71.88  Aligned_cols=100  Identities=14%  Similarity=0.074  Sum_probs=75.1

Q ss_pred             cHHHHHHHHHHHH---HhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---------cCHHHHHHHHHHHhccCCCC
Q 008400          414 KYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       414 ~~~~A~~~y~~al---~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---------~~~~~Ai~~~~~al~~~p~~  481 (567)
                      ....|+..|.+|+   .+.|..               ..+|.-+|.||...         ..-.+|.+...+|+++||.+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~---------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLK---------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCccc---------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            3577888899998   444332               33466666666654         24567888888888899999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      +.|++.+|.++...++++.|...|++|+.++|+...+....+.+...
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~  384 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH  384 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            99999999988888889999999999999999888777776664333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.00034  Score=66.97  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=85.7

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT  524 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~  524 (567)
                      .+|.|.-+++.|+|..|...+..-+..-|++   +.|+|++|.+++.+|+|+.|...|..+.+-.|+++   +..-.+..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6789999999999999999999999998986   68999999999999999999999999999988875   55666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008400          525 LKEKMKEYNKKEAKFYGNMFAKMKSRAQGGR  555 (567)
Q Consensus       525 ~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~  555 (567)
                      +..++++.. ..+++|...-++....+....
T Consensus       224 ~~~~l~~~d-~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLGNTD-EACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHhcCHH-HHHHHHHHHHHHCCCCHHHHH
Confidence            666555444 455688888877776665443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.00029  Score=70.80  Aligned_cols=154  Identities=16%  Similarity=0.048  Sum_probs=113.8

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------ChHHHHHHHHH------------HHHHHhhHHH
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------GDEEKKQAKAL------------KVACNLNNAA  456 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~e~~~~~~~~------------~~~~~~nla~  456 (567)
                      +..++.+.+.++.|--..+-.+|++.|.++..++|.++..       .+.+.++.+.+            .+...--+|.
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a  634 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA  634 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence            4457888899999998999999999999999888765422       11111111111            0112235788


Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                      .|+...-|++||.++++|--+.|+.+|-.+..|.|+.+.|+|..|...|+...+.-|.|.++.+.|-++.--+.-.   +
T Consensus       635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~---d  711 (840)
T KOG2003|consen  635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK---D  711 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch---h
Confidence            8888999999999999999999999999999999999999999999999999999999998888777764444332   3


Q ss_pred             HHHHHHhhHhhhhccc
Q 008400          537 AKFYGNMFAKMKSRAQ  552 (567)
Q Consensus       537 ~~~~~~~f~~~~~~~~  552 (567)
                      .+.|..-+.++.+..+
T Consensus       712 ~key~~klek~eki~e  727 (840)
T KOG2003|consen  712 AKEYADKLEKAEKIKE  727 (840)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.66  E-value=0.00028  Score=70.25  Aligned_cols=105  Identities=21%  Similarity=0.222  Sum_probs=73.7

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-cCHHHHHHHHHHHhc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLD  476 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~  476 (567)
                      .+..+.+.+ ..++..++.+|+..|++|+.+.......         .....++.++|.+|... ++++.|+.+|.+|+.
T Consensus        74 Aa~~~~~Aa-~~~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~  143 (282)
T PF14938_consen   74 AAKAYEEAA-NCYKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE  143 (282)
T ss_dssp             HHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333433333 3344457777777777777765543322         33466788999999998 999999999999988


Q ss_pred             cCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          477 LDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       477 ~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      +-.  +.    ...+.+.|.++..+++|++|+..|+++....
T Consensus       144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            622  12    4677899999999999999999999998864

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=2.2e-05  Score=72.82  Aligned_cols=80  Identities=30%  Similarity=0.524  Sum_probs=70.3

Q ss_pred             cCCCeEEEEEEcccCCCCCC--CCCEEEEEEEEEEcC--CCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400           35 GNQGLKKKLVKEGEGWDTPE--NGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~--~gd~V~v~Y~~~~~~--g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~  110 (567)
                      ...||.++|+..|.| +-|.  .|..|.+||.....+  ++++|+|..-|+|+.+++|.---++-||..|..|+++|.+.
T Consensus         8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            457899999999999 6554  799999999987653  57999999989999999998888999999999999999998


Q ss_pred             EEecC
Q 008400          111 FTIPP  115 (567)
Q Consensus       111 i~ip~  115 (567)
                      |.+.-
T Consensus        87 F~~d~   91 (329)
T KOG0545|consen   87 FWCDT   91 (329)
T ss_pred             hhhhh
Confidence            87654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.64  E-value=0.0019  Score=60.94  Aligned_cols=114  Identities=14%  Similarity=0.097  Sum_probs=85.6

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-----------cCHHHHH
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE  468 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~Ai  468 (567)
                      ......|..+|+.|+|..|+..|++.++..|.+...            ..+++.+|.|++++           +...+|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~  110 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI  110 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence            456788999999999999999999999998876532            23456666666554           3456899


Q ss_pred             HHHHHHhccCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          469 KLCTKVLDLDSRNVK-----------------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       469 ~~~~~al~~~p~~~k-----------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ..++..+..-|++..                 --+..|+-|+..|.|..|+.-++.+++--|+.......+..+
T Consensus       111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            999999999998731                 233578889999999999999999999999997655554444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.62  E-value=0.0016  Score=53.85  Aligned_cols=106  Identities=17%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-----
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-----  477 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-----  477 (567)
                      ...|...+..|-|.+|...|.+|.+.-...+.   ++.=.-...-.-||.-|+.++..+|+|++++....++|.+     
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG   89 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG   89 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence            45667778899999999999999987554332   2222233455677889999999999999999999999864     


Q ss_pred             --CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          478 --DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       478 --~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                        +.+    +..+-|++|.++..+|+.++|+..|+++-+.
T Consensus        90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence              333    3678899999999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.61  E-value=0.00013  Score=50.18  Aligned_cols=42  Identities=29%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      +++.+|.+|..+|++++|++.++++++.+|+|+.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            478899999999999999999999999999999999998863

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.56  E-value=0.0019  Score=57.92  Aligned_cols=138  Identities=15%  Similarity=0.210  Sum_probs=104.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      .......|+.+...|+|.+|..+|.+++.=+-...              ..+++-+|.+++..+++..|...++.+.+.+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            34456778999999999999999999985321111              2347789999999999999999999999998


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008400          479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ  552 (567)
Q Consensus       479 p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~  552 (567)
                      |.  .+...+..|++|..+|.+.+|...|+.++...|+- .++-.+.....++.... ..+..|..+++.+.....
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~-ea~aq~~~v~d~~~r~~~  228 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLR-EANAQYVAVVDTAKRSRP  228 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHhcch
Confidence            85  47788899999999999999999999999999886 34555555444433222 334566667766554443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.00058  Score=72.85  Aligned_cols=83  Identities=18%  Similarity=0.252  Sum_probs=72.8

Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      ..+|.-.+..++|.+|.++++..++++|-....||++|.|.++++++..|.++|..+..++|+|.++++.+..+..++++
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~  568 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK  568 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence            33444455679999999999999999999999999999999999999999999999999999999999998887666655


Q ss_pred             HHH
Q 008400          532 YNK  534 (567)
Q Consensus       532 ~~~  534 (567)
                      ..+
T Consensus       569 k~r  571 (777)
T KOG1128|consen  569 KKR  571 (777)
T ss_pred             hHH
Confidence            543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.54  E-value=0.0013  Score=57.09  Aligned_cols=67  Identities=18%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      +++.|...++.|+|.+|++.++.+....|..   ..|.+.++.+|+..++|++|+..+++.++++|.++.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            6788999999999999999999999987754   789999999999999999999999999999999874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00016  Score=67.09  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      .-+.+++.-+.|..|+..|.+||.++|+.+..|-++|.||+++.+++.+..++++|++++|+......-++.+...
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            3466777889999999999999999999999999999999999999999999999999999986555555554333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.48  E-value=0.00076  Score=74.14  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=98.1

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---------ChHHHHH------------HHHHHHHHHhhHHHHHHh
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQ------------AKALKVACNLNNAACKLK  460 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~~------------~~~~~~~~~~nla~~~~k  460 (567)
                      +--.|..|..--+..+|.++|.+|.++...+...         ..+.++.            ....+...+..+|..|++
T Consensus       495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe  574 (1238)
T KOG1127|consen  495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE  574 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence            3344544444445667777788777776554321         1111111            122334455668999999


Q ss_pred             ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      .+++..|+..++.||+.+|++..+|.-+|.+|...|.|..|++.|.+|..++|.+.-.+-...-+.+...++++
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999997666665656666655554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.46  E-value=0.0002  Score=45.95  Aligned_cols=33  Identities=39%  Similarity=0.564  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578888888888888888888888888888854

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.004  Score=57.88  Aligned_cols=135  Identities=20%  Similarity=0.264  Sum_probs=94.6

Q ss_pred             hhhhhhHHHhc-CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          402 KKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       402 ~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      +.+.|..+-.. .++++|+.+|+.|-++....         +......+|++..|.....+++|.+|+..|+++.+..-+
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33444444333 67889999999998876543         233556677888888888899999999999998775444


Q ss_pred             C------HHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          481 N------VKAL-YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       481 ~------~ka~-~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |      +|-| +.-|.||+...+.-.|...+++..+++|...+ .++...++..+...++.....|-.....
T Consensus       187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d-sREckflk~L~~aieE~d~e~fte~vke  258 (288)
T KOG1586|consen  187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD-SRECKFLKDLLDAIEEQDIEKFTEVVKE  258 (288)
T ss_pred             chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            4      4544 46688999999999999999999999999654 2334444444555555555555544433

>PRK15331 chaperone protein SicA; Provisional

Probab=97.44  E-value=0.0013  Score=58.45  Aligned_cols=84  Identities=12%  Similarity=-0.098  Sum_probs=73.1

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      .+..|.-++..|++++|...+.-...+||.|++.++-+|.|+..+++|++|+..|-.|..++++|+...-..+.|.-.++
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            55778888999999999999999999999999999999999999999999999999999999998766666666655555


Q ss_pred             HHHH
Q 008400          531 EYNK  534 (567)
Q Consensus       531 ~~~~  534 (567)
                      +...
T Consensus       120 ~~~~  123 (165)
T PRK15331        120 KAAK  123 (165)
T ss_pred             CHHH
Confidence            4443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.43  E-value=0.00066  Score=67.49  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=70.3

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--cc--CHHHHHHHHHHHhccCCCCHH
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LK--DYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~--~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      .+++.++++.|.+.++++-+..++                 .+..++|.++..  .|  ++.+|...|++.....+.+++
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~  202 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK  202 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence            445556666666666554433211                 124455554444  33  688888888888777778888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      .+..+|.|++.+|+|++|...++.|+..+|++.+....+.-+...+++.
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            8888899999999999999999999988888877766666665555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.43  E-value=0.0012  Score=55.49  Aligned_cols=63  Identities=30%  Similarity=0.227  Sum_probs=57.6

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      .-|.+....++.+.|++.+.++|.+.|.++.+|.|+|+++.-.|+.++|+.++++|+++.-..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            346667788999999999999999999999999999999999999999999999999996443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.43  E-value=0.0024  Score=65.87  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .++|+.|+..|++.....+.                  +..-+|.+++..++..+|++..+++|...|.+...+...|..
T Consensus       182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            57788899888886654331                  144588899999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                      ++..++|+.|+...++|.++.|++...+..|..+...+++.+.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999999999999999988888776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.43  E-value=0.00024  Score=45.50  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      .+++++|.+++++|+|++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            358899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10941 hypothetical protein; Provisional

Probab=97.42  E-value=0.0016  Score=63.52  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=71.3

Q ss_pred             HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      .+....+.|+-.+|.+.++|+.|+.++++++.++|+++.-+--||.+|.+++.+..|..+|+..++..|+++.+......
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            34555678999999999999999999999999999999988889999999999999999999999999999765444333


Q ss_pred             H
Q 008400          525 L  525 (567)
Q Consensus       525 ~  525 (567)
                      +
T Consensus       258 l  258 (269)
T PRK10941        258 I  258 (269)
T ss_pred             H
Confidence            3

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.41  E-value=0.00082  Score=75.44  Aligned_cols=110  Identities=14%  Similarity=0.049  Sum_probs=79.4

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh-HHHH-HH--HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKK-QA--KALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-e~~~-~~--~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ..+.-.|-.++..+++.+|...  .++...+......- +... .+  ......+++.+|.||-++|++++|...++++|
T Consensus        66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L  143 (906)
T PRK14720         66 SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV  143 (906)
T ss_pred             ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3445556666667777666666  55555443331100 0000 00  00111368899999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      +++|+|+.++.++|..|... ++++|+..+.+|+...
T Consensus       144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            99999999999999999999 9999999999998763

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0027  Score=59.95  Aligned_cols=70  Identities=23%  Similarity=0.348  Sum_probs=66.1

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ...++.|.+.+|+-.++|..|...+.+++..||.++.|-.++|.|++.+|+..+|++.++.++...|...
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            4557889999999999999999999999999999999999999999999999999999999999999964

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.41  E-value=0.0013  Score=72.39  Aligned_cols=74  Identities=28%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      |.-.+..++|++|++.|+++|+.||+|..|++-+|.++..+++ .++|.+.|..|.+++|+|.-+++.|..+.++
T Consensus         9 Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen    9 AKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            3444567999999999999999999999999999999999999 9999999999999999999999988888776

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.41  E-value=0.0021  Score=62.28  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                      ++..|.-+++.|+|++|+..+++++...|...   .+.+++|.+|+.+++|++|+..+++.+++.|+++.+-
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            66788889999999999999999999999885   5569999999999999999999999999999987443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.35  E-value=0.00063  Score=70.64  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=91.6

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~  487 (567)
                      -+...|+-..|+.+..+|+...|.....              -..|+|...++-+....|-..+.++|.++...+-.+|-
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v--------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~  681 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQDV--------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS  681 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhcc--------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence            3334688899999999999776543322              16799999999999999999999999999888899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      +|++|+.+.+.+.|++.|+.|++++|++..+..-|..+..
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999999999999999999998888877655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.32  E-value=0.0017  Score=68.45  Aligned_cols=117  Identities=18%  Similarity=0.141  Sum_probs=83.1

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      +.+.+--.|-.+...|+-++|...-..+++......               .||.-+|..+..-++|++||++|..||.+
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---------------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---------------VCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccc---------------hhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            344555667777777777888777777776443322               34777788888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +|+|...|.-++....++++|+.....-.+.+++.|.+.+-+-.+....-.+
T Consensus       105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen  105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL  156 (700)
T ss_pred             CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            8888888888888888888888888777778888887765555444443333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.0057  Score=57.64  Aligned_cols=86  Identities=20%  Similarity=0.144  Sum_probs=63.4

Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK--EYNKKEA  537 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~--~~~~~e~  537 (567)
                      .+|+--+||+..+.-|+.=+++..||..++..|..+++|++|.-||+..+-+.|-|......+..+.=-+.  +..+-.+
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35555666666666666666777899999999999999999999999999999999888888877643333  3333445


Q ss_pred             HHHHHhhH
Q 008400          538 KFYGNMFA  545 (567)
Q Consensus       538 ~~~~~~f~  545 (567)
                      +.|.+.++
T Consensus       212 kyy~~alk  219 (289)
T KOG3060|consen  212 KYYERALK  219 (289)
T ss_pred             HHHHHHHH
Confidence            56655554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.004  Score=60.79  Aligned_cols=76  Identities=24%  Similarity=0.187  Sum_probs=62.8

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      |-.-|.-|+|.++|..|+..|.+.|...-.    |.-.|.|||.|.+.+|+|..|+.++.+|++++|.+  ++..++-++
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~Ak  161 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRGAK  161 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhhhH
Confidence            445688899999999999999999986433    35678899999999999999999999999999999  444444443


Q ss_pred             HH
Q 008400          527 EK  528 (567)
Q Consensus       527 ~~  528 (567)
                      ..
T Consensus       162 c~  163 (390)
T KOG0551|consen  162 CL  163 (390)
T ss_pred             HH
Confidence            33

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0022  Score=67.40  Aligned_cols=105  Identities=17%  Similarity=0.135  Sum_probs=91.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .-.-+++.+..+|+..+|..|++.|...++.++.+...         ....++..|++.||+++.+.+.|.+++.+|-+.
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            34567899999999999999999999999998765422         223667889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      +|.++-..+..-++....+.-++|+.++.+....
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            9999988888999999999999999888776654

>PRK11906 transcriptional regulator; Provisional

Probab=97.26  E-value=0.0011  Score=68.21  Aligned_cols=87  Identities=15%  Similarity=0.075  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 008400          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ  494 (567)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~  494 (567)
                      -.+|++.-.+|+++.+.++               .++..+|.+....++++.|+..+++|+.++|+.+.++|..|..+..
T Consensus       320 ~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~  384 (458)
T PRK11906        320 AQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH  384 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            4455566666666655544               3477888888889999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH
Q 008400          495 MADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       495 l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      .|+.++|+..+++|++++|.-.
T Consensus       385 ~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        385 NEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             cCCHHHHHHHHHHHhccCchhh
Confidence            9999999999999999999863

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.20  E-value=0.002  Score=64.41  Aligned_cols=103  Identities=13%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+-+.||.+.-.|+|..|+++|++++.+......         +..-...++.+|..|.-++++++||.+.++-|.+..
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568899999999999999999999877543221         122334467899999999999999999999776532


Q ss_pred             ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          480 ------RNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       480 ------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                            ....|++.+|.+|..+|+.++|+.+.++.+++
T Consensus       307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                  34789999999999999999999999888876

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.18  E-value=0.0035  Score=66.24  Aligned_cols=86  Identities=12%  Similarity=-0.022  Sum_probs=57.8

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      .++|+-+|+++-.+++.+.|...|..-++..|+.+-.|..+++.-...|+.-.|+..|+++..-+|+|...+.+.-++..
T Consensus       685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El  764 (913)
T KOG0495|consen  685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL  764 (913)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777555544444444


Q ss_pred             HHHHHH
Q 008400          528 KMKEYN  533 (567)
Q Consensus       528 ~~~~~~  533 (567)
                      +....+
T Consensus       765 R~gn~~  770 (913)
T KOG0495|consen  765 RAGNKE  770 (913)
T ss_pred             HcCCHH
Confidence            443333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.18  E-value=0.0012  Score=47.07  Aligned_cols=41  Identities=24%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~  490 (567)
                      +++.+|..++++|+|..|..+|+.+|+++|+|..|.-.+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            57789999999999999999999999999999887654443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.13  E-value=0.0013  Score=65.47  Aligned_cols=91  Identities=21%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 008400          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (567)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~  492 (567)
                      ..|++|...|++.....+.               ...+++.+|.|++.+|+|++|...+.+++..+|+++.++.|++.+.
T Consensus       181 e~~~~A~y~f~El~~~~~~---------------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGS---------------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            3699999999986543321               1244778999999999999999999999999999999999999999


Q ss_pred             HhcCCH-HHHHHHHHHHHHhCCCCHHH
Q 008400          493 IQMADL-DLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       493 ~~l~~~-~~A~~~~~~al~l~P~n~~~  518 (567)
                      ..+|+. +.+.+.+.+....+|+++-+
T Consensus       246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            999998 67778888888899998644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0025  Score=63.88  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=84.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      ...+.-.|+.+...++.++|+-.|+.|..+-|.               +..+|--+-.||+..+.+.+|.-..+.+++.-
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhcchh---------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence            345566677777777777777777777766443               34557778889999999999999999999888


Q ss_pred             CCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRA-QAYI-QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       479 p~~~ka~~~~a-~a~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      |++.+++-..| .+++ .-.--++|.+.++++|+++|....+-..+..+....
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E  451 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE  451 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh
Confidence            88888888876 3333 334457899999999999999865555555554433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.06  E-value=0.0054  Score=60.49  Aligned_cols=136  Identities=20%  Similarity=0.273  Sum_probs=100.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC----------CCChH-----H-------------HHHHHHHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SFGDE-----E-------------KKQAKALKVA  449 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~~~~e-----~-------------~~~~~~~~~~  449 (567)
                      .+.+..+.|..+|...++.+|+..+.+.|..+.+..          ....+     +             .-+.-..+..
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677889999999999999999999988765321          00000     0             0011224566


Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL----  520 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~----  520 (567)
                      +|.|++..+-++.+|.+++.+|...+.+--..     ..++..+|.||+.++.|++|++.|++|+++.-++.+...    
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            89999999999999999999999999874332     368888999999999999999999999999766654333    


Q ss_pred             --HHHHHHHHHHHHH
Q 008400          521 --EYKTLKEKMKEYN  533 (567)
Q Consensus       521 --~l~~~~~~~~~~~  533 (567)
                        .|..+..++++..
T Consensus       165 cv~Lgslf~~l~D~~  179 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYE  179 (518)
T ss_pred             hhhHHHHHHHHHhhh
Confidence              3444455555444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0046  Score=60.75  Aligned_cols=103  Identities=20%  Similarity=0.143  Sum_probs=77.3

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~  487 (567)
                      .+..+.+|..|+...+-.+...       +|++       ..+-.-+|.|++++|+|++|+..|..+.+.+..+.+...+
T Consensus        31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn   96 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN   96 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence            4666788999888877666321       1222       1223458999999999999999999999988888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      +|.|+..+|.|.+|...-.+|    |+++....++-.+..+
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHH
Confidence            999999999999998776554    6666555555444333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0016  Score=62.54  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=77.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .|....+.|..+|+.|+|+.|++.|+.|++.-......               -+|+|.|+++.++|..|+++..+.++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll---------------AYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL---------------AYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh---------------HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            35667889999999999999999999999875544332               679999999999999999999998764


Q ss_pred             ----CCC----------------C---------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008400          478 ----DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK  506 (567)
Q Consensus       478 ----~p~----------------~---------~ka~~~~a~a~~~l~~~~~A~~~~~  506 (567)
                          .|.                |         ..|+..++.++++.++++.|.+.+.
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                221                1         2577788999999999999987763

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.02  E-value=0.0019  Score=59.34  Aligned_cols=72  Identities=14%  Similarity=0.065  Sum_probs=67.4

Q ss_pred             HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      +.+..+++.+|..|-.+|-+.-|.-++.++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..+++||.+.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            346667889999999999999999999999999999999999999999999999999999999999999984

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.99  E-value=0.019  Score=57.58  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=101.6

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~  472 (567)
                      --|...|......|-..+-.|+|.+|.+...++-+.-+               ....+|.--|.+...+|+++.|=.+..
T Consensus        78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e---------------~p~l~~l~aA~AA~qrgd~~~an~yL~  142 (400)
T COG3071          78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE---------------QPVLAYLLAAEAAQQRGDEDRANRYLA  142 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc---------------chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            35677888888889888889999999999888665422               123346666778888999999999999


Q ss_pred             HHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          473 KVLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       473 ~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      ++-+..+ .+.-.+..+++.++..++|..|...+.++++..|.++.+.....++..+++.+++
T Consensus       143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            9988733 4567788899999999999999999999999999999888888777777665553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.98  E-value=0.0059  Score=64.59  Aligned_cols=127  Identities=18%  Similarity=0.135  Sum_probs=101.3

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC---------ChHHHHHHHHHHHH---------HHhhHHHHHHhccCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLKDYK  465 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~~~~~~~~~---------~~~nla~~~~k~~~~~  465 (567)
                      .-+..++..|+...|......|.+..+.+...         ...+.+..+.+...         +|+.-+....-+++.+
T Consensus       589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence            44567778899999999999999887764211         11222333333322         4555666666789999


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       466 ~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +|++.|+++|+.-|...|.|+.+|+++..+++.+.|++.|...++..|...-.+-.|.++..+..
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999988988888877664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.024  Score=55.87  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      .+.+|.+++..-.|++||+.|.++|.-+|+....-..+|.||+++.-|+-+.+.+.-.|+.-|++.-+..+..
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka  226 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA  226 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3567778888889999999999999999988877889999999999999999999999999999976665544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.94  E-value=0.0073  Score=51.28  Aligned_cols=84  Identities=17%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             HHHHHhhHHHHHHhcc---CHHHHHHHHHHHhc-cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          447 KVACNLNNAACKLKLK---DYKQAEKLCTKVLD-LDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~---~~~~Ai~~~~~al~-~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      ...+.+|+|-|..+..   +..+-+..+...++ -.|. .-..+|.+|..|+++++|+.|+.+++..|+.+|+|..+..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3445778888888765   56678888888886 4443 36789999999999999999999999999999999988877


Q ss_pred             HHHHHHHHH
Q 008400          522 YKTLKEKMK  530 (567)
Q Consensus       522 l~~~~~~~~  530 (567)
                      -+.++.++.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            776665554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.88  E-value=0.0049  Score=59.44  Aligned_cols=74  Identities=23%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      -++.|.-..+.|+.++|...+..||.++|.++.++.+.|.....-++.-+|-.+|-+||.++|.|.++.....+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            44677777789999999999999999999999999999999999999999999999999999999876655544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.00057  Score=66.88  Aligned_cols=104  Identities=17%  Similarity=0.220  Sum_probs=75.0

Q ss_pred             HHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---
Q 008400          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY---  532 (567)
Q Consensus       456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~---  532 (567)
                      .-.+..|.++.|+++|..++.++|.+.-.|-.||.+++.++....|+.+|..|++++|+...-.......+..+..+   
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            34456788999999999999999999999999999999999999999999999999999764333333333333222   


Q ss_pred             ------------HHHHHHHHHHhhHhhhhccccccchhh
Q 008400          533 ------------NKKEAKFYGNMFAKMKSRAQGGRAHER  559 (567)
Q Consensus       533 ------------~~~e~~~~~~~f~~~~~~~~~~~~~~~  559 (567)
                                  .+.-..+.+..|-+..+...+.+..++
T Consensus       202 a~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er  240 (377)
T KOG1308|consen  202 AHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYER  240 (377)
T ss_pred             HHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHH
Confidence                        223344555666555555554443333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.85  E-value=0.011  Score=53.18  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       463 ~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      -|+.|.+.++.....+|.++.+|+|.|-+++.+.++          ++|+.-|+.||.++|+..++.-.++.+...+.
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999998654          67889999999999999888777777655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.83  E-value=0.0014  Score=67.18  Aligned_cols=71  Identities=30%  Similarity=0.320  Sum_probs=63.6

Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      -+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.+++..++|..|+.++.+|++++|..  ++..+++
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rr   78 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRR   78 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeec
Confidence            3667778899999999999999999999999999999999999999999999999999999997  4444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.79  E-value=0.0023  Score=40.43  Aligned_cols=32  Identities=34%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      |+|++|.++..+|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67777777777777777777777777777764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.77  E-value=0.0017  Score=41.52  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      .+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            358899999999999999999999999999854

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.75  E-value=0.013  Score=62.95  Aligned_cols=100  Identities=18%  Similarity=0.134  Sum_probs=79.0

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +++..+.++...|++++|+.++......-.+....+-.+|.+|+.+|++++|...|+..++.+|+|......|..+....
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence            45567788899999999999999988877888899999999999999999999999999999999988888777775222


Q ss_pred             H----HHHHHHHHHHHHhhHhhhh
Q 008400          530 K----EYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       530 ~----~~~~~e~~~~~~~f~~~~~  549 (567)
                      .    ...+.-..+|..+-.+.+.
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~yp~  109 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKYPR  109 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhCcc
Confidence            2    2234445566655444433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.70  E-value=0.033  Score=50.72  Aligned_cols=102  Identities=20%  Similarity=0.158  Sum_probs=79.0

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      ...+.+..++..+++++|+...+.++..-.            -..+...+-.++|.+++.++.+++|+..++..-.-. -
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w  157 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTK------------DENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W  157 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccch------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H
Confidence            445777888999999999999998885421            123455557789999999999999999886653311 1


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      .+...-.+|.+++..|+-++|+..|++|++.++++
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            12335678999999999999999999999998655

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.68  E-value=0.0014  Score=42.67  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      +|.++|.+|..+|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666664433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.018  Score=60.50  Aligned_cols=115  Identities=23%  Similarity=0.202  Sum_probs=82.3

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHH----HH-HHHHhhHHHHHHhc
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA----LK-VACNLNNAACKLKL  461 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~----~~-~~~~~nla~~~~k~  461 (567)
                      ..+...-|.+-+.++|++|++.-.+.+...+++...             .++....++.    .. ....+..|.|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            345555667777888888888888888776544321             1111111111    01 11125789999999


Q ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      ++.++|+.+++   -+++...+.+..+|+.++++++|++|.+.|+..++-+.++.+
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            99999999998   556777899999999999999999999999999887766543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.54  E-value=0.0038  Score=38.43  Aligned_cols=32  Identities=44%  Similarity=0.657  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      .+++++|.++..++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45666677777777777777777777666664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.53  E-value=0.015  Score=55.30  Aligned_cols=69  Identities=20%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~  518 (567)
                      -+++-|...++.|+|.+|+..++.+....|.+   .++++.++.++++.++|++|+..+++.+++.|.++++
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            37789999999999999999999999988765   6999999999999999999999999999999998753

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.51  E-value=0.021  Score=56.47  Aligned_cols=101  Identities=22%  Similarity=0.268  Sum_probs=83.0

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC--
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--  480 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--  480 (567)
                      ...|+++...+.|++|++.|+.|+++.....+.         .+-..++..++..|..++++++|+-+..+|+++-.+  
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~  196 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG  196 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence            347888888999999999999999987654433         233455889999999999999999999999876322  


Q ss_pred             ----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          481 ----N----VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       481 ----~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                          +    .-++|+++.++..+|+.-.|.++++.|.++.
T Consensus       197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence                1    3578999999999999999999999998874

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.47  E-value=0.021  Score=60.98  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +--+..+|..+..+|+.++|++.|++|+..           ..+.+++...++..+|-|+.-+.+|++|..++.+.++. 
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-  334 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-  334 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-
Confidence            344567888888999999999999998842           12355677788999999999999999999999999885 


Q ss_pred             CCCHHHHH--HHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 008400          479 SRNVKALY--RRAQAYIQMADL-------DLAEFDIKKALEIDP  513 (567)
Q Consensus       479 p~~~ka~~--~~a~a~~~l~~~-------~~A~~~~~~al~l~P  513 (567)
                      .++.+++|  -.|.|+..+++.       ++|...|.++-.+-.
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            44566655  568899999999       888888888876643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.053  Score=51.69  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=89.8

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhc---------c--CCCChHHHHHHHHHH-HHHHhhHHHHHHhc----cCHHH
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEY---------D--TSFGDEEKKQAKALK-VACNLNNAACKLKL----KDYKQ  466 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~---------~--~~~~~e~~~~~~~~~-~~~~~nla~~~~k~----~~~~~  466 (567)
                      ...|..+.+.++|++|++.-.....+--.         .  ......+.+.+++.- -..+..+|.+|.++    .+++.
T Consensus       112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  112 LLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             HHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence            34566788899999999887652221000         0  000111112222221 22344577777775    46899


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      |.-.|+..-+..|.++..+.-.|.|++.+++|++|...++.||.-++++++....+--+...++.-
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            999999988877888999999999999999999999999999999999988777776665555433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.04  Score=51.81  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=87.0

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH----hccC-
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD-  478 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a----l~~~-  478 (567)
                      +++....+..+.+.|++.|++++.+.......         .....++...+..+.+++.|.+|-..+.+-    +..+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            44445555667788888888888776644322         233445677788888999999887777663    2333 


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          479 -SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       479 -p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                       +...|++.-.-.+|+...+|..|.++++...++.--+  -...-+.+.+.+..+++.+-..++++.+
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~kvl~  251 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKKVLS  251 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence             3445777777778888889999999999988775333  2233344555666666666555555543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.21  E-value=0.058  Score=55.74  Aligned_cols=100  Identities=19%  Similarity=0.163  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 008400          418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD  497 (567)
Q Consensus       418 A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~  497 (567)
                      -...|++|+...+.+.               .++++...-..|.+.+.+.-..|.++|.++|+++..|.--|.-.+..+.
T Consensus        90 Iv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~  154 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL  154 (568)
T ss_pred             HHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc
Confidence            3466777776655433               3366666555666779999999999999999999999999998888776


Q ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          498 -LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       498 -~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                       .+.|++.|.++|+.+|+++.++.++-++.-.....
T Consensus       155 ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~K  190 (568)
T KOG2396|consen  155 NIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEK  190 (568)
T ss_pred             chHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Confidence             99999999999999999999888877664443333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.18  E-value=0.14  Score=48.47  Aligned_cols=100  Identities=13%  Similarity=0.093  Sum_probs=74.0

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccC-------HHHHHHHHHHHhccCCC
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~-------~~~Ai~~~~~al~~~p~  480 (567)
                      .+-....+++|++.|.-|+.........        ......+++.+|=+|..+++       +..|+..|.+|++....
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~  157 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF  157 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            4555678999999999999764422211        12456667788888888887       45566666666665432


Q ss_pred             ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          481 ------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       481 ------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                            ....+|.+|..+..+|++++|+.+|.+++..--.+
T Consensus       158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence                  26899999999999999999999999999865444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.053  Score=50.63  Aligned_cols=109  Identities=19%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-cCHHHHHHHHHHHhc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLD  476 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~  476 (567)
                      .+..+.+.+| .|++.+..+|+++..+|+++......+         .....-+..+|..|-.. .++++||.+|+++-+
T Consensus        73 aat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae  142 (288)
T KOG1586|consen   73 AATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAE  142 (288)
T ss_pred             HHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3444444444 455668888888888888887655443         12223355667776654 899999999999966


Q ss_pred             cCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          477 LDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       477 ~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      .-.      ..-|+++..|.--..+++|.+|++.|+++....-+|.
T Consensus       143 ~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  143 YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            432      2257888888888899999999999999998877765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.09  E-value=0.0074  Score=39.25  Aligned_cols=28  Identities=21%  Similarity=0.162  Sum_probs=24.2

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      +|.++|.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3789999999999999999999996654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.07  E-value=0.021  Score=59.71  Aligned_cols=149  Identities=14%  Similarity=0.118  Sum_probs=107.0

Q ss_pred             hhhhhhhHHHh-cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          401 KKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       401 ~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      .+...+..|++ +|+..+|+.+|..|+.+.+....             ..+++.+|.+..+.|.-.+|--.+..|+.-.|
T Consensus       214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~  280 (886)
T KOG4507|consen  214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDAD  280 (886)
T ss_pred             HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCc
Confidence            34455555554 89999999999999988765432             23477899999999998888888888887767


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccccccc
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK---LEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRA  556 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~---~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~~  556 (567)
                      .-..-+|-++.++..+++|.....+|..|++.+|......   +..-.|..++.+..+++.+..+.|...+.. -++.+.
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~nE~ke-Fqk~~~  359 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTLNELKE-FQKQHD  359 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            6666699999999999999999999999999999864322   223346666666666666666666554332 233444


Q ss_pred             hhhcccC
Q 008400          557 HERRQQG  563 (567)
Q Consensus       557 ~~~~~~~  563 (567)
                      |.+|+++
T Consensus       360 h~~~~~e  366 (886)
T KOG4507|consen  360 HYLRQQE  366 (886)
T ss_pred             HHHHHHH
Confidence            5555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.06  E-value=0.0073  Score=38.05  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +++++|.||.++|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            47899999999999999999999999998874

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.22  Score=48.48  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=79.7

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH-------
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK-------  473 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~-------  473 (567)
                      .....+..+...+++.+|...|..++...+.+...               ..-+|.||+..|+.+.|...+..       
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~~  200 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQD  200 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence            35677888999999999999999999988765432               55677777777777555444332       


Q ss_pred             ---------------------------HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 008400          474 ---------------------------VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKT  524 (567)
Q Consensus       474 ---------------------------al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--n~~~~~~l~~  524 (567)
                                                 .+..||++..+-+.+|..|...|++++|.+.|-..++.+-.  +..+++.+-.
T Consensus       201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle  280 (304)
T COG3118         201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE  280 (304)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence                                       22346778888888888888888888888877777766533  2344544444


Q ss_pred             HHHHH
Q 008400          525 LKEKM  529 (567)
Q Consensus       525 ~~~~~  529 (567)
                      +....
T Consensus       281 ~f~~~  285 (304)
T COG3118         281 LFEAF  285 (304)
T ss_pred             HHHhc
Confidence            44443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.04  E-value=0.072  Score=57.45  Aligned_cols=128  Identities=13%  Similarity=0.035  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhhhccCCCCh-------HHHHHHHHHHHHHHhhHHHHHHhcc--------CHHHHHHHHHHHhcc--C
Q 008400          416 ARASKRYEKAVKYIEYDTSFGD-------EEKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLDL--D  478 (567)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~-------e~~~~~~~~~~~~~~nla~~~~k~~--------~~~~Ai~~~~~al~~--~  478 (567)
                      -.|..+|-++..++........       ++..+.......+|.-+|.||....        +...+.....+++.+  +
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            3677778777776543221100       1111122223445556666665542        345566666666553  7


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |..+.+|.-+|..+...|++++|...|++|+.++| +..+...++++....++.+++. ..|.+.|.
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~  481 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA-DAYSTAFN  481 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence            88889999999999999999999999999999999 5678888888877777666543 35555554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.96  E-value=0.02  Score=58.77  Aligned_cols=120  Identities=17%  Similarity=0.097  Sum_probs=84.3

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc-c-
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-L-  477 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~-~-  477 (567)
                      ..+.-..+..|..|+|..|.+.....--........      .-+-.....++|+|.+++.++.|..++.++.+||+ . 
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~------T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTI------TPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccc------cchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            334445556666677666665543321111100000      11122344568999999999999999999999996 1 


Q ss_pred             -------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          478 -------DS---------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       478 -------~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                             .|         .....+||.|..|+..|+.-.|-++|.+|...--.|+.++..+.+|
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                   11         2357899999999999999999999999999999998888888776

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.96  E-value=0.0039  Score=40.00  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=29.4

Q ss_pred             HHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH
Q 008400          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (567)
Q Consensus       421 ~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~  469 (567)
                      .|++||++.|.+...               |+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhcC
Confidence            388999998877654               9999999999999999863

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.95  E-value=0.067  Score=42.96  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~~~~~~~~  533 (567)
                      .+..+.+.+..+|++..+.|.+|.+++..|++++|++.|-.+++.+++.  ..+++.+-.+...+....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4566788899999999999999999999999999999999999998876  466666666666665543

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.95  E-value=0.055  Score=55.88  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--ccC-----HHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKD-----YKQA  467 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~~-----~~~A  467 (567)
                      .+.......+.|..+|..|+|.+|+..|+..|..++-....+.++..+++++...|.-.+-.+-+.  .+.     .+..
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            344445566789999999999999999999999988877777788888888877766554433333  222     2233


Q ss_pred             HHHHHHHh-----ccCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          468 EKLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       468 i~~~~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      .+.++.+.     .+.|.|.---+|.|. ..++.++|.-|....++.|++.|....
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence            34444432     234444333334444 566789999999999999999998753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.94  E-value=0.22  Score=45.94  Aligned_cols=58  Identities=29%  Similarity=0.383  Sum_probs=28.4

Q ss_pred             HHHhccCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      ++...+++..|+..+.+++..+|   .....++.++..+...++++.|+..+.+++...+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            44555555555555555544443   23344444444444555555555555555555544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.84  E-value=0.11  Score=57.41  Aligned_cols=111  Identities=18%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~  487 (567)
                      .....++|.+|+....+.++..|+....               ..--|....++|++++|....+..-..-+++...+--
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a---------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYA---------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHH---------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence            3456788999999999988877653322               3345778889999999995555544455667778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      +-.||..++++++|..+|+++...+|+ .+....+-.+..+.+.+.+
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999 5555555555555555543

>smart00028 TPR Tetratricopeptide repeats

Probab=95.81  E-value=0.015  Score=35.51  Aligned_cols=32  Identities=38%  Similarity=0.471  Sum_probs=29.3

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      ++.++|.|+..+++++.|+..+.++++++|.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            47899999999999999999999999988863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.80  E-value=0.088  Score=48.70  Aligned_cols=96  Identities=30%  Similarity=0.393  Sum_probs=68.0

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC-CHHHHH
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-NVKALY  486 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-~~ka~~  486 (567)
                      .++..+++..|+..|.+++...+.....            ...+.+++..+...+++..|+..+.+++...+. ...++.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNEL------------AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccch------------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            7888899999999999887743310110            111334444466777888888888888887777 577788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          487 RRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       487 ~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      .++.++...++++.|+..+..++...|..
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  235 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPDN  235 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence            88888888888888888888888877763

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.80  E-value=0.39  Score=47.62  Aligned_cols=123  Identities=16%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             CCChHHHHHHHhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400          389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (567)
Q Consensus       389 ~~~~~e~~~~a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (567)
                      .+++......+..+.+-|..+++++ +|..|+.-.++|.++++.... .........+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4566777889999999999999999 999999999999999754210 11122345678888999999999999887654


Q ss_pred             HHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          468 EKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       468 i~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      .+ |.++++    -.|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            44 444433    3466677776666666668888888888888887543

It is also involved in sporulation [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.70  E-value=0.099  Score=51.88  Aligned_cols=127  Identities=14%  Similarity=0.110  Sum_probs=88.1

Q ss_pred             hHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh-ccCHHHHHHHHHHHhccCCCCHHHH
Q 008400          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKAL  485 (567)
Q Consensus       407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~~~p~~~ka~  485 (567)
                      +..-+.+..+.|...|.+|++.....               ..+|...|...++ .++.+.|...++++++.-|.+...|
T Consensus         9 ~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~   73 (280)
T PF05843_consen    9 RFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW   73 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence            34444555889999999998432211               1347777888666 5777779999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                      .....-+..+++.+.|+..|++++..-|...   .++..+-..+...+... .-.+.++++...+..
T Consensus        74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhh
Confidence            9999999999999999999999999877765   35555555555444332 333455555554433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.64  E-value=0.018  Score=53.56  Aligned_cols=61  Identities=20%  Similarity=0.308  Sum_probs=56.9

Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      ...+.++.+.|.+.|+++|++-|.+...|||+|.-..+.|+++.|.+.|++.|+++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4456789999999999999999999999999999999999999999999999999999853

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.56  E-value=0.23  Score=58.12  Aligned_cols=101  Identities=21%  Similarity=0.126  Sum_probs=68.1

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC---
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR---  480 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~---  480 (567)
                      ..|..++..|++.+|...|.+++.........         .....++.++|.+++.+|++..|...+.+++.+-..   
T Consensus       496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  566 (903)
T PRK04841        496 VLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence            34445555566666666666655543321111         122345678899999999999999999998875211   


Q ss_pred             -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          481 -----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       481 -----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                           ..-.+..+|.++...|++++|...+.+++.+..
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence                 123456778899999999999999999988643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.11  Score=50.09  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (567)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~  520 (567)
                      ........|+=..+...++|+.|..+.++.+.++|.++..+--+|.+|.+++-+.-|+.++...++..|+...+..
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            3444556788889999999999999999999999999999999999999999999999999999999999875433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.49  E-value=0.34  Score=44.24  Aligned_cols=148  Identities=15%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHH------HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC-CCHH--
Q 008400          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-RNVK--  483 (567)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~------~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p-~~~k--  483 (567)
                      .....|-..|.+++..............++...      .-....+.+|..+...++++.|+..++.++..-. .+.+  
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l  127 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence            445688888999988775433321222222111      1222345677788889999999999999996532 2344  


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhccc
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHERRQQ  562 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l-~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~~~~~~~~  562 (567)
                      +-+|+|++++.++.+|+|++.+...-.  ++-......+ +.+....+ ..+..++.|.+....+ ..+..+++.+-++|
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg-~k~~Ar~ay~kAl~~~-~s~~~~~~lqmKLn  203 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKG-DKQEARAAYEKALESD-ASPAAREILQMKLN  203 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcC-chHHHHHHHHHHHHcc-CChHHHHHHHhHHH
Confidence            456899999999999999998875432  2222222332 33333333 2334566788877776 45555556665655


Q ss_pred             Cc
Q 008400          563 GM  564 (567)
Q Consensus       563 ~~  564 (567)
                      +|
T Consensus       204 ~L  205 (207)
T COG2976         204 NL  205 (207)
T ss_pred             hc
Confidence            54

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.48  E-value=0.026  Score=54.66  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      .+.+.|......+....+.|+.++|.+.|..|+.+.|.....               +..+|...-..++.-+|-.+|-+
T Consensus       111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~  175 (472)
T KOG3824|consen  111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVK  175 (472)
T ss_pred             hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhe
Confidence            345556666667777888999999999999999998876643               66777777777888999999999


Q ss_pred             HhccCCCCHHHHHHHHHHH
Q 008400          474 VLDLDSRNVKALYRRAQAY  492 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~  492 (567)
                      ||.++|.|.+|+.++++..
T Consensus       176 ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  176 ALTISPGNSEALVNRARTT  194 (472)
T ss_pred             eeeeCCCchHHHhhhhccc
Confidence            9999999999999998754

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.41  E-value=0.15  Score=42.14  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=73.4

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHH----HHhccCHHHHHHHHHHHhccCCC
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC----KLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~----~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      ++..+|.+|++-+|++..+..+.....+...     -....+.-.++..+|..    ..|..-.-.|++.+.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~-----~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS-----WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch-----HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            5678999999999999999998765543321     02223333333333322    11222355688999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      .+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999998888888999999988888763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.40  E-value=0.23  Score=45.49  Aligned_cols=105  Identities=18%  Similarity=0.143  Sum_probs=79.0

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...-..+.+.|+-+++.|+++.|++.|.++..+....            ...+.+++++-.+.+..++|..+..+..++-
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3345677899999999999999999999988764321            3456678888889999999999999999986


Q ss_pred             ccCCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          476 DLDSR--NV----KALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       476 ~~~p~--~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      .+-..  +.    +.-.-.|.+++..++|..|...|-.+..-.
T Consensus       101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            54322  21    233345777888899999998887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.27  E-value=0.28  Score=50.51  Aligned_cols=135  Identities=15%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             hcCcHHHHHHHHHHHHHhhhccCCCChHHH----------HHHHHHH------------HHHHhhHHHHHHhccCHHHHH
Q 008400          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEK----------KQAKALK------------VACNLNNAACKLKLKDYKQAE  468 (567)
Q Consensus       411 ~~g~~~~A~~~y~~al~~~~~~~~~~~e~~----------~~~~~~~------------~~~~~nla~~~~k~~~~~~Ai  468 (567)
                      ...+...+.+.|+.+|+++|...-....-+          ..+...+            .+++-..-..-+++++++.|.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence            467888999999999998875321100000          0000001            111111122345567777777


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR--DVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~--~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ..|.+-|+..|.|..+|...|..-..||+.+.|...|+-|+....-+.  .+++.+-....... .-++.++.|.+++.+
T Consensus       458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~-E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG-EFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence            777777777777777777777777777777777777777775432221  12222222222222 223556677776653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.25  E-value=0.55  Score=49.77  Aligned_cols=83  Identities=13%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      -+.+.+.+..+...|+|.+|++...+|++++.......+...+..+.....+...+|.++..+|+-.+|...|...+..+
T Consensus       175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            45678899999999999999999999988765543333333455556666677889999999999999999999999887


Q ss_pred             CCC
Q 008400          479 SRN  481 (567)
Q Consensus       479 p~~  481 (567)
                      |.+
T Consensus       255 ~~D  257 (652)
T KOG2376|consen  255 PAD  257 (652)
T ss_pred             CCC
Confidence            654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.25  E-value=0.2  Score=52.05  Aligned_cols=128  Identities=20%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             CCChHHHHHHHhhhhhhh----hHH--Hh---cCcHHHHHHHHHHHHHhhhccCCCCh-------H-HH--HHHHHHHHH
Q 008400          389 DMNTEEKIEAAGKKKEQG----NTL--FK---AGKYARASKRYEKAVKYIEYDTSFGD-------E-EK--KQAKALKVA  449 (567)
Q Consensus       389 ~~~~~e~~~~a~~~~~~G----~~~--~~---~g~~~~A~~~y~~al~~~~~~~~~~~-------e-~~--~~~~~~~~~  449 (567)
                      +.+...+++.|.+-.+.-    ..|  ..   .....+|.+.|++|++.-+.......       . +.  ........-
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y  260 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY  260 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence            345666666654433222    222  21   23368888899998887554322110       0 00  001112334


Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNR  516 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~P~n~  516 (567)
                      +...+|.|..++|+.++|++.+...++..|.  +....+++..|++.++.|.++...+.+.-++ -|++.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA  330 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA  330 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence            4567999999999999999999999988775  5779999999999999999999999987544 24543

The molecular function of this protein is uncertain.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.18  Score=48.84  Aligned_cols=86  Identities=15%  Similarity=0.062  Sum_probs=68.3

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~  488 (567)
                      +.+..+|..|++....-.+..+.+.               ..+.-+|.||+...+|..|..+|++.-.+.|...+.-+..
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~r---------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~   84 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSR---------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ   84 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            4566777777777665555444322               2367899999999999999999999999999998888889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 008400          489 AQAYIQMADLDLAEFDIKKAL  509 (567)
Q Consensus       489 a~a~~~l~~~~~A~~~~~~al  509 (567)
                      |+.+++.+.+.+|+.......
T Consensus        85 AQSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhc
Confidence            999999999999987665443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=0.69  Score=43.77  Aligned_cols=104  Identities=17%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC---
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD---  478 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~---  478 (567)
                      +...++.+-..++|++|.....+|.+..+++...         ....+.|-..+....++..|.++..++++|..+.   
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3333444445788999999999999877766543         2234446666777777889999999999987653   


Q ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       479 --p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                        |+....-+-+|--.+..-+.++|+..|++++.+--.
T Consensus       105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence              343444444555566677889999999999887443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.98  E-value=0.13  Score=58.33  Aligned_cols=62  Identities=6%  Similarity=-0.079  Sum_probs=54.2

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      .|..+..++.+.|+++.|...++++++++|.+...|..++.+|...|++++|.+.++...+.
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            46777777888999999999999999999998889999999999999999999999877654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=0.42  Score=47.18  Aligned_cols=108  Identities=16%  Similarity=0.064  Sum_probs=67.1

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC------------ChH-HHHHHHH----------HHHHHHhhHHH
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDE-EKKQAKA----------LKVACNLNNAA  456 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~e-~~~~~~~----------~~~~~~~nla~  456 (567)
                      +.....+..++.+|++.+|...+.+.|+-.|.+--.            +.+ ....+..          ...-++--+|-
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            455667778899999999999999999877654211            000 0000111          11112233456


Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK  507 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  507 (567)
                      |....|-|.+|.+..++++++++.+.-|...++.++...+++.++.+...+
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            666667777777777777777777766766777777777777777666554

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.86  E-value=0.2  Score=41.86  Aligned_cols=81  Identities=19%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH----hc
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD  476 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a----l~  476 (567)
                      ++...|+..++.+++-.|+-+|+.|+..........+.+.++.-...+....|+|.-+..+|+-+-.++|++-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999987776544455556666677778889999999999999999998765    55


Q ss_pred             cCCCC
Q 008400          477 LDSRN  481 (567)
Q Consensus       477 ~~p~~  481 (567)
                      +-|..
T Consensus        83 LiPQC   87 (140)
T PF10952_consen   83 LIPQC   87 (140)
T ss_pred             hccCC
Confidence            65653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.86  E-value=0.54  Score=41.34  Aligned_cols=95  Identities=19%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      ..|......++...++..+.+++.+....                      ..++.+++.++...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            33445556678888999999988764211                      25667888899999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       511 l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      ++|-|..+...+-++....++.... .+.|.++-+.+.
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A-~~~Y~~~~~~l~  127 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEA-LRVYERYRRRLR  127 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHH-HHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHH-HHHHHHHHHHHH
Confidence            9999998888888877776665433 345555544443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.85  E-value=0.3  Score=47.24  Aligned_cols=75  Identities=15%  Similarity=0.086  Sum_probs=65.2

Q ss_pred             CChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008400          435 FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (567)
Q Consensus       435 ~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (567)
                      +.+.+.+-...+...++...|..|++.|.+.+|+++|++++.+||-+...+.-+-+.|..+|+--.|++.|++.-
T Consensus       266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            344566777788888888889999999999999999999999999999999999999999999888888777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.77  E-value=0.2  Score=58.63  Aligned_cols=99  Identities=10%  Similarity=0.056  Sum_probs=78.8

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC--
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--  480 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--  480 (567)
                      ...|..++..|++.+|...+.+++...+...          ......++.++|.++...|++++|...+.+++.....  
T Consensus       456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g  525 (903)
T PRK04841        456 ALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD  525 (903)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            3467788889999999999999997543211          1123345678999999999999999999999875332  


Q ss_pred             ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          481 ----NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       481 ----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                          ...++.++|.+++..|++++|...+++++.+
T Consensus       526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                1357788999999999999999999999986

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.75  E-value=0.44  Score=43.16  Aligned_cols=100  Identities=19%  Similarity=0.255  Sum_probs=75.4

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKE  527 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~~  527 (567)
                      .+.+|.....+|++.+|...|.+++. +--.++..++-+|++...++++-.|...+++..+.+|.-  ++-..++.+...
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            66889999999999999999999987 344678899999999999999999999999999998874  344445555444


Q ss_pred             HHHHHHH---------------HHHHHHHHhhHhhhhc
Q 008400          528 KMKEYNK---------------KEAKFYGNMFAKMKSR  550 (567)
Q Consensus       528 ~~~~~~~---------------~e~~~~~~~f~~~~~~  550 (567)
                      ...+..+               ..+..|..|+.+....
T Consensus       172 a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         172 AQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcch
Confidence            4433332               2244666777665433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.74  E-value=0.36  Score=54.70  Aligned_cols=143  Identities=9%  Similarity=0.012  Sum_probs=93.6

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhh--hcc----------C--CCChHHHHHHHHHH--------HHHHhhHHHH
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYD----------T--SFGDEEKKQAKALK--------VACNLNNAAC  457 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~--~~~----------~--~~~~e~~~~~~~~~--------~~~~~nla~~  457 (567)
                      ..+......|.+.|++++|++.|++.++.-  |+.          .  ...++-..-.+...        ...|..+..+
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            345566667777888888888887765431  110          0  00111111111111        1247778889


Q ss_pred             HHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008400          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (567)
Q Consensus       458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~  537 (567)
                      +.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...+++.++++|++......+..+..+.++.+++ .
T Consensus       472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A-~  548 (697)
T PLN03081        472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA-A  548 (697)
T ss_pred             HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH-H
Confidence            999999999999887652 333 4567888889999999999999999999999999866666666666655554433 3


Q ss_pred             HHHHHhhH
Q 008400          538 KFYGNMFA  545 (567)
Q Consensus       538 ~~~~~~f~  545 (567)
                      +.++.|-.
T Consensus       549 ~v~~~m~~  556 (697)
T PLN03081        549 KVVETLKR  556 (697)
T ss_pred             HHHHHHHH
Confidence            34555544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=0.62  Score=44.66  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      ..+++.|.-.|+..-+..+...               .+.+-+|.|++.+++|++|......+|..+++.+..+-|+-.+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~---------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTP---------------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCCh---------------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            4557888888877665333222               2367789999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHH-HHHHHHhCCCCHHH
Q 008400          492 YIQMADLDLAEFD-IKKALEIDPDNRDV  518 (567)
Q Consensus       492 ~~~l~~~~~A~~~-~~~al~l~P~n~~~  518 (567)
                      -..+|.-.++... +.+....+|+++-+
T Consensus       251 a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  251 ALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            9999988777654 45555667777543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.65  E-value=0.42  Score=49.32  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=82.9

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka  484 (567)
                      -|.---.+++++.|...|.+||.....+               +.+++..|.|-+|.++.+.|....++|+.+-|.--+.
T Consensus        79 YaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql  143 (677)
T KOG1915|consen   79 YAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL  143 (677)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH
Confidence            3333445678889999999999775443               3458899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ||..-..--.+|+...|...|++=++..|+..
T Consensus       144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence            99988888899999999999999999999864

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.21  E-value=0.37  Score=47.11  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       438 e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      ++....++....++..++..+...++++.++...++.+..+|.+.++|.++-.+|+..|+...|+..|++.-++
T Consensus       143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            44556678889999999999999999999999999999999999999999999999999999999999988874

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.12  E-value=1.1  Score=52.66  Aligned_cols=115  Identities=11%  Similarity=-0.016  Sum_probs=69.7

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhh--hccC------------CCChHHHHHHHHH---------HHHHHhhHHH
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYDT------------SFGDEEKKQAKAL---------KVACNLNNAA  456 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~--~~~~------------~~~~e~~~~~~~~---------~~~~~~nla~  456 (567)
                      ..+...-..+.+.|++++|++.|.+.....  ++..            ...++-......+         ....|+.+-.
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~  587 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK  587 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            345556667777888888888877665421  1000            0000111111111         1234666677


Q ss_pred             HHHhccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPD  514 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~P~  514 (567)
                      +|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|++++|+..|+...+.  .|+
T Consensus       588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD  648 (1060)
T PLN03218        588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD  648 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence            7788888888888888877765 345667777777777888888888877777664  454

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.04  E-value=0.082  Score=35.09  Aligned_cols=29  Identities=21%  Similarity=0.186  Sum_probs=19.2

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+++|+|.+|..+|+|++|+.++.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34667777777777777777777777654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=0.45  Score=50.76  Aligned_cols=77  Identities=18%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                      -...++-|-|.-+++.++|..+++.|...+..-|.+      .|..-+++.||+.+.+.|.|.+.+..|-+.+|.+.-.+
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            344556688999999999999999999999876543      68888999999999999999999999999999996544


Q ss_pred             HHH
Q 008400          520 LEY  522 (567)
Q Consensus       520 ~~l  522 (567)
                      .+.
T Consensus       432 ~~~  434 (872)
T KOG4814|consen  432 LLM  434 (872)
T ss_pred             HHH
Confidence            433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.86  E-value=0.94  Score=46.24  Aligned_cols=113  Identities=19%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHH-hhhccCCCC------------------hHHHHHHHHHHHHHHhhHHHHHHhc-
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL-  461 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~e~~~~~~~~~~~~~~nla~~~~k~-  461 (567)
                      ..+.+..++..|+-.+|+...+..+. .+.......                  .............+++-+|.-...+ 
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~  266 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY  266 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence            34455566666777777777776666 222211000                  0012233445566677777766666 


Q ss_pred             -----cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCC
Q 008400          462 -----KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPD  514 (567)
Q Consensus       462 -----~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~-----------------~~A~~~~~~al~l~P~  514 (567)
                           +.++.++..|.+++.++|++.++|+..|..+..+=+.                 ..|+..|-+|+.+.++
T Consensus       267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                 7888888888888888888888888888876665222                 2366777777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=93.85  E-value=0.82  Score=46.20  Aligned_cols=111  Identities=16%  Similarity=0.077  Sum_probs=77.6

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      ..+..+...|++++|.+.-..+++..-+..                 + ..=.-.++.+++..=++..++.+...|+++.
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------------L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------------L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChh-----------------H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            344566678899999998888886532100                 0 1111234667888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      .++.+|+.+++.+.|.+|...|+.|++..|+.. ....+......+.+-.
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~  378 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPE  378 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence            888888888888888888888888888887753 3445555544444333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.71  E-value=0.59  Score=49.98  Aligned_cols=74  Identities=8%  Similarity=-0.049  Sum_probs=60.7

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      ++..|..+...|+.++|+..+++++......    .-++|.+|-+|+.+.+|++|..++.+..+.+.-++.....+.-
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            6788999999999999999999998643322    3478899999999999999999999999977666655555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.63  E-value=1.2  Score=52.53  Aligned_cols=113  Identities=10%  Similarity=-0.082  Sum_probs=71.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh--ccCC------------CChHHHHHHHHH-------HHHHHhhHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIE--YDTS------------FGDEEKKQAKAL-------KVACNLNNAAC  457 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~--~~~~------------~~~e~~~~~~~~-------~~~~~~nla~~  457 (567)
                      ...+...-..+.+.|+++.|.+.|.+..+.-.  +...            ..++........       ....|+.+-.+
T Consensus       472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a  551 (1060)
T PLN03218        472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA  551 (1060)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34455666778899999999999998875321  1000            000111111111       12456677777


Q ss_pred             HHhccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          458 KLKLKDYKQAEKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       458 ~~k~~~~~~Ai~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      |.+.|++++|.+.+.+...    +.|+ ...|..+-.+|.+.|++++|.+.|+...+.+
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            7777888888887777754    2333 4566667777888888888888888777765

>PLN03077 Protein ECB2; Provisional

Probab=93.60  E-value=0.84  Score=53.06  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=87.0

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHh--hhccCCC------------ChHHHHHHHHH--------HHHHHhhHHHHH
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF------------GDEEKKQAKAL--------KVACNLNNAACK  458 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~--~~~~~~~------------~~e~~~~~~~~--------~~~~~~nla~~~  458 (567)
                      .+......+.+.|+.++|++.|++..+.  .|+...+            .++-..-.+..        ....|..+..++
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            3556677888899999999999987653  1221111            01111111111        223577788888


Q ss_pred             HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      .+.|++++|.+.+++. .+.|+ +..|-.+-.++..-++.+.|....+++++++|++......+..+....++.+
T Consensus       636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~  708 (857)
T PLN03077        636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD  708 (857)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence            8888888888888775 34443 5556666667777888888888888889999998877777777666555544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.57  E-value=1.1  Score=52.13  Aligned_cols=66  Identities=18%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      ++|..|+-+|.+-+.+++|.+.+++.++.--+..+.|...|..++...+-++|...+++||+.-|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            346667778888888888888888887766667788888888888888888888888888888887

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.45  E-value=0.49  Score=36.42  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+....++|..+|.+.+.++|+..++++++......            .+-.++-.++.+|...|+|.+++++..+=+.
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999998765422            2344466778888889999998887765443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.39  E-value=0.18  Score=33.37  Aligned_cols=30  Identities=33%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      ..++.++|.+|..+|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999976

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.39  E-value=0.088  Score=54.18  Aligned_cols=100  Identities=15%  Similarity=0.080  Sum_probs=74.7

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHH-hhhccCC-CCh-HHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTS-FGD-EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~-~~~-e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~  472 (567)
                      +.......+.|..+|+-+.|..++..|.+||+ .+..... ... ..-.....-...+.+|.|..|+..|++..|.+++.
T Consensus       280 ~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  280 LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence            44566678899999999999999999999996 3322110 000 00001112233457899999999999999999999


Q ss_pred             HHhccCCCCHHHHHHHHHHHHhc
Q 008400          473 KVLDLDSRNVKALYRRAQAYIQM  495 (567)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l  495 (567)
                      ++...-..|+..|+|+|.|++..
T Consensus       360 ~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  360 KAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Confidence            99998888999999999998764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.16  E-value=0.51  Score=38.20  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             HHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      ...+.++|..|++...+..++.........      ......+.+|+|.++...|++++|+..+++++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356789999999999998877544332210      1122334566777777777777777777777665

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.12  E-value=0.77  Score=39.33  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=36.9

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~  490 (567)
                      ..+.+.+|..++++++|+.|+.+++..|+.+|+|..|.-.+-.
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4457789999999999999999999999999999887654433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=1.9  Score=41.36  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=84.6

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc----cC
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD  478 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~  478 (567)
                      ....+.+...|+|.-.+..|.+.++..+.              ....+...++.+.++.|+.+.|..+++++-+    ++
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e--------------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~  246 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPE--------------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD  246 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCc--------------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence            34556677778888888888888875432              2234567889999999999999999996543    22


Q ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       479 --p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                        ..+.-.+.+.+.+|...++|-+|-..|.+.+..||.+..+...-+.|.--+++
T Consensus       247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~  301 (366)
T KOG2796|consen  247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK  301 (366)
T ss_pred             ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence              23455677788888888999999999999999999987655555555444443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.69  E-value=0.45  Score=38.48  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=47.5

Q ss_pred             HHHhccCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~---------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      -.++.++|..|++.+.+.+.....         ..-+++++|..+...|++++|+..++.|+++.-.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345789999998888888765321         1468899999999999999999999999998544

>PLN03077 Protein ECB2; Provisional

Probab=92.66  E-value=0.94  Score=52.64  Aligned_cols=61  Identities=13%  Similarity=0.004  Sum_probs=52.6

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      +|..+-.++...++.+.|....+++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus       659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            3444544556788999999999999999999999999999999999999999999877764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.54  E-value=1.8  Score=38.53  Aligned_cols=84  Identities=17%  Similarity=-0.017  Sum_probs=68.9

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      ..+..+..+-++.++...+...+..+--+.|+++..-.--|..|...|+|.+|+..|+.+..-.|....++.++..|...
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34556667777888888888888888888899988888889999999999999999999888888888888888888666


Q ss_pred             HHHH
Q 008400          529 MKEY  532 (567)
Q Consensus       529 ~~~~  532 (567)
                      +++-
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            5433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.17  E-value=2.1  Score=47.54  Aligned_cols=125  Identities=19%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-------cCHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-------KDYKQA  467 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-------~~~~~A  467 (567)
                      ++.......+.|..+...|+|.+|+++|..+|-.++-....+.++..+++++...+...+......+       .+.+.+
T Consensus       987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen  987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred             cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence            3566777889999999999999999999999988876665566777777777766644443332222       223333


Q ss_pred             --HHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          468 --EKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       468 --i~~~~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                        +..|=.-..+.|-+. -|+..--.++.++++|..|.....+.|++.|....+.
T Consensus      1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence              222222245556553 3444444689999999999999999999999875443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.00  E-value=1.7  Score=50.64  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=71.6

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      ...+|...|...+++++-++|...+.+||..-|.  +.+..-.-|+.-++.|+-+.++..|+-.+.-+|.-.++|..|..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            3556888899999999999999999999999897  78888888999999999999999999999999998888877765


Q ss_pred             HHHH
Q 008400          525 LKEK  528 (567)
Q Consensus       525 ~~~~  528 (567)
                      ...+
T Consensus      1643 ~eik 1646 (1710)
T KOG1070|consen 1643 MEIK 1646 (1710)
T ss_pred             HHHc
Confidence            5443

>PRK10941 hypothetical protein; Provisional

Probab=91.83  E-value=0.73  Score=45.15  Aligned_cols=76  Identities=12%  Similarity=-0.040  Sum_probs=64.2

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +.+.=..+.+.++|..|+++-++.+.+.|.+...               +.-+|.+|.+++.+..|+.+++.-++..|+.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            4455567889999999999999999999877643               5579999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008400          482 VKALYRRAQAY  492 (567)
Q Consensus       482 ~ka~~~~a~a~  492 (567)
                      +.+-.-+.+..
T Consensus       249 p~a~~ik~ql~  259 (269)
T PRK10941        249 PISEMIRAQIH  259 (269)
T ss_pred             hhHHHHHHHHH
Confidence            88766655543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.72  E-value=4.2  Score=42.39  Aligned_cols=101  Identities=22%  Similarity=0.217  Sum_probs=74.5

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+.-+.-.|-...--+.|+.|..+|..|.+...            ...+..-+..|+|..|+..++-+.-   ++-.-.
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~------------~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~  429 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE------------SIDLQAFCNLNLAISYLRIGDAEDL---YKALDL  429 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh------------HHHHHHHHHHhHHHHHHHhccHHHH---HHHHHh
Confidence            3455566677777777889999999999987643            2345667788999999997764432   222223


Q ss_pred             cCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          477 LDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       477 ~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      +.|.|          ..++|-.|.-.+..+++.+|...+.+.|+..
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            34443          3578888999999999999999999999986

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.69  E-value=0.91  Score=44.41  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++...+.-..+.+.|...-..|.++|..+|.|+..|.- .+.-+...++++.|++.|.++|+++|+++.++.++-++
T Consensus       109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            35556666677889999999999999999999988876 45567888999999999999999999999988887665

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.61  E-value=2.3  Score=49.01  Aligned_cols=116  Identities=11%  Similarity=0.077  Sum_probs=83.1

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh-------ccCHHHHHHHHHHHhc
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQAEKLCTKVLD  476 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-------~~~~~~Ai~~~~~al~  476 (567)
                      .-.+++...+.|++|+..|++.....|......+            +.+..|...+.       ...+.+|+.-+++.-.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYE------------AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG  547 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchH------------HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC
Confidence            3445777889999999999998877765443211            12223333222       1357788887776543


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                       .|.-+--|+-+|.+|..+++|++-+++|..|++-.|+.+.+..+...+--++.+.
T Consensus       548 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (932)
T PRK13184        548 -GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES  602 (932)
T ss_pred             -CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence             4667788899999999999999999999999999999998777776654444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.37  E-value=5.1  Score=36.63  Aligned_cols=77  Identities=17%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLE  521 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~  521 (567)
                      ...++..+|.-|++.|+++.|++.|.++.......   ...+++.-++.+..+++..+...+.+|-.+-  +.+++.+..
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            44568899999999999999999999998875433   5678899999999999999999999998774  334444444


Q ss_pred             HH
Q 008400          522 YK  523 (567)
Q Consensus       522 l~  523 (567)
                      +.
T Consensus       115 lk  116 (177)
T PF10602_consen  115 LK  116 (177)
T ss_pred             HH
Confidence            43

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.13  E-value=0.39  Score=31.54  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      .+|.++|.+-+..++|++|+.+|++||++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45778888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.10  E-value=2.2  Score=44.68  Aligned_cols=44  Identities=18%  Similarity=0.053  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTL  525 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~  525 (567)
                      .-+-.|+|.|.-++|+.++|++.++..++..|..  ..++..|-.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~  304 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA  304 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence            3455688999999999999999999999988863  3455544443

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.95  E-value=10  Score=37.40  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhcc----CC---C
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R  480 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~----~p---~  480 (567)
                      ..++|+++.|...|.++-........       .........++|.|...++.+ +++.|+...++|+++    ..   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            45789999999999999887741111       112345566889999999999 999999999999877    22   1


Q ss_pred             C-------HHHHHHHHHHHHhcCCHHHH---HHHHHHHHHhCCCCHHHH
Q 008400          481 N-------VKALYRRAQAYIQMADLDLA---EFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       481 ~-------~ka~~~~a~a~~~l~~~~~A---~~~~~~al~l~P~n~~~~  519 (567)
                      .       .+.+..++.+|+..+.++..   ...++.+-.-.|+.....
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            1       36777889999999887644   444444544456655444

It is also involved in sporulation [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.88  E-value=0.79  Score=29.68  Aligned_cols=33  Identities=24%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 008400          483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN  515 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~--~~~al~l~P~n  515 (567)
                      +.++-+|..+...|+|++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567778888888888888888  44777777664

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.59  E-value=1.7  Score=43.01  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=70.2

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      |..+.....+.+..+.|...+.+|++..+.+...|...|..-+. .++.+.|.+.|+.+++..|.+.+++..+-.....+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            44555566666779999999999997777788899999998666 56666699999999999999988877776655555


Q ss_pred             HHHHHHHHHHHHHhhHhhhh
Q 008400          530 KEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       530 ~~~~~~e~~~~~~~f~~~~~  549 (567)
                      .+. ..-+..|.+....+..
T Consensus        84 ~d~-~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   84 NDI-NNARALFERAISSLPK  102 (280)
T ss_dssp             T-H-HHHHHHHHHHCCTSSC
T ss_pred             CcH-HHHHHHHHHHHHhcCc
Confidence            433 3445566666655433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.30  E-value=1.2  Score=45.32  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=75.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC-
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-  478 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~-  478 (567)
                      ..+.+.|.-|...|+++.|++.|.++-.++.+.            ...+..+.|+-.+-+-+++|.....+.++|...- 
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~  218 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD  218 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence            345677888888999999999999987776532            2234457777777788999999999999987751 


Q ss_pred             -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008400          479 -------SRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (567)
Q Consensus       479 -------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (567)
                             .-.++...-.|.+++.++.|..|.+.|-.+.
T Consensus       219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                   1135677778899999999999999887664

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.00  E-value=1.1  Score=30.52  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=21.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          486 YRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      +.+|++|..+|+++.|+..++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6788888888888888888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.82  E-value=11  Score=39.07  Aligned_cols=76  Identities=12%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLK  526 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~----~~~~~l~~~~  526 (567)
                      ++.=|.-.+..|+|.+|.-++.=+.+.+| ++.+|-.+|.|++...+|++|..++..   +-|++.    .+.+.+..|.
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCq  540 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQ  540 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHH
Confidence            34446667789999999999999999999 899999999999999999999998864   445432    3444555555


Q ss_pred             HHHH
Q 008400          527 EKMK  530 (567)
Q Consensus       527 ~~~~  530 (567)
                      +.+.
T Consensus       541 Kh~~  544 (549)
T PF07079_consen  541 KHLP  544 (549)
T ss_pred             Hhhh
Confidence            5443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.49  E-value=6.3  Score=40.11  Aligned_cols=122  Identities=16%  Similarity=0.088  Sum_probs=86.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...+..+.+.|+|+.|.....++..........           ...+.+..|......|+..+|+...+..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667788888999999999999999988765322211           112244556666667777777777766665


Q ss_pred             c--C--------------------------------CCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCH
Q 008400          477 L--D--------------------------------SRNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       477 ~--~--------------------------------p~~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~l~P~n~  516 (567)
                      .  .                                ....++++.+|.....+      +..+++...|+.|.+++|++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            1  0                                01147888888888888      889999999999999999987


Q ss_pred             HHHHHHHHHHHHH
Q 008400          517 DVKLEYKTLKEKM  529 (567)
Q Consensus       517 ~~~~~l~~~~~~~  529 (567)
                      .+...++.....+
T Consensus       293 k~~~~~a~~~~~~  305 (352)
T PF02259_consen  293 KAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            7666666554443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.48  E-value=0.51  Score=44.18  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             hHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      ..+++.++...|.+.|.+|+.+.+.....               ++.++....|.|+++.|.+.|.++|++||.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34677899999999999999987754433               7889999999999999999999999999875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.42  E-value=1.6  Score=42.32  Aligned_cols=66  Identities=20%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+.|.++|+.|+|+.|++.|+.+........-         ..+...++..+..|+.++++.+..+..|-+.+.
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            347888999999999999999999766554332         245666677888999999999998888876653

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.05  E-value=1.9  Score=40.74  Aligned_cols=86  Identities=14%  Similarity=0.105  Sum_probs=54.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      +.|=-++..++......-+..|+..|.+|+.........         .....+.+-+|..+.++|++++|++.+.+++.
T Consensus       123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            334444555555555555677777777777654331111         11223567899999999999999999999998


Q ss_pred             cCCCCH-HHHHHHHHH
Q 008400          477 LDSRNV-KALYRRAQA  491 (567)
Q Consensus       477 ~~p~~~-ka~~~~a~a  491 (567)
                      ....+. ..+.++|+-
T Consensus       194 ~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  194 SKKASKEPKLKDMARD  209 (214)
T ss_pred             CCCCCCcHHHHHHHHH
Confidence            633322 366666653

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.44  E-value=14  Score=39.48  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=67.5

Q ss_pred             chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhh
Q 008400          326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ  405 (567)
Q Consensus       326 ~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~  405 (567)
                      +.-..+..++..|.++....+.++.-|+.                                      ...+..|...+.+
T Consensus       256 qaq~~F~~av~~~d~n~v~~lL~ssPYHv--------------------------------------dsLLqva~~~r~q  297 (665)
T KOG2422|consen  256 QAQRDFYLAVIVHDPNNVLILLISSPYHV--------------------------------------DSLLQVADIFRFQ  297 (665)
T ss_pred             HHHHHHHHHHhhcCCcceeeeeccCCcch--------------------------------------hHHHHHHHHHHHh
Confidence            45566888899999999888877654432                                      1234445555555


Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhh--ccCCCChHHH-HHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC-C
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIE--YDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-N  481 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~--~~~~~~~e~~-~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-~  481 (567)
                      |..-..++-.++|+-.|.+|+.-.-  ......-+-. -+-+.+...+| ..-....+.|.|..|.++|+..|.++|. +
T Consensus       298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp~eD  376 (665)
T KOG2422|consen  298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDPSED  376 (665)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCCcCC
Confidence            5555555555566666666654211  1000000000 11122333323 2333445789999999999999999997 5


Q ss_pred             H
Q 008400          482 V  482 (567)
Q Consensus       482 ~  482 (567)
                      +
T Consensus       377 P  377 (665)
T KOG2422|consen  377 P  377 (665)
T ss_pred             c
Confidence            4

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.29  E-value=4.2  Score=42.42  Aligned_cols=102  Identities=23%  Similarity=0.151  Sum_probs=82.0

Q ss_pred             HHHhhhhhhhhHHHh-cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHH
Q 008400          397 EAAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKV  474 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~a  474 (567)
                      -.|....+.|..+|. ..+++.|..+.++|..+....+.+.        ..+-.++.-+|.||.... .+..|.....++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrka  115 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKA  115 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            346667777877775 8999999999999998877666552        234455778899999887 899999999999


Q ss_pred             hccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008400          475 LDLDSRN----VKALYRRAQAYIQMADLDLAEFDIK  506 (567)
Q Consensus       475 l~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~  506 (567)
                      +++..++    .|.++.+|+.+.-..+|.-|.+.+.
T Consensus       116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            9987665    5888999999999999998887753

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.29  E-value=2.7  Score=41.70  Aligned_cols=66  Identities=14%  Similarity=0.053  Sum_probs=46.5

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCCH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKAL--EIDPDNR  516 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al--~l~P~n~  516 (567)
                      ....|.++...++++++.+...+.-..-...    ..-|.-.|.+|+.-++|+.|+..|.+-+  +++.++.
T Consensus       212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            5567777777899999999887654332211    2334557889999999999999997655  4555554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.91  E-value=4.9  Score=41.34  Aligned_cols=108  Identities=11%  Similarity=0.036  Sum_probs=64.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-----------CC---ChH-HHHHHHHHHHHHHhhHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SF---GDE-EKKQAKALKVACNLNNAACKLKLKD  463 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-----------~~---~~e-~~~~~~~~~~~~~~nla~~~~k~~~  463 (567)
                      +..+.+.+..+..+|++..|....++||-.++...           ..   .-+ ...+-+.+. .+.+.......+.|.
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff-lal~r~i~~L~~RG~  118 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF-LALFRYIQSLGRRGC  118 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH-HHHHHHHHHHHhcCc
Confidence            45566777777888888888888888776544210           00   000 111222333 334456667778999


Q ss_pred             HHHHHHHHHHHhccCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400          464 YKQAEKLCTKVLDLDSR-NV-KALYRRAQAYIQMADLDLAEFDIKK  507 (567)
Q Consensus       464 ~~~Ai~~~~~al~~~p~-~~-ka~~~~a~a~~~l~~~~~A~~~~~~  507 (567)
                      |..|++.|+-.+.+||. ++ -+++.+=...++.++|+--+..++.
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~  164 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES  164 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence            99999999999999998 43 2333333334444555444444443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.83  E-value=8.1  Score=42.36  Aligned_cols=92  Identities=25%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             hhhhhhHHHhcC-----cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc---CHHHHHHHHHH
Q 008400          402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK  473 (567)
Q Consensus       402 ~~~~G~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~---~~~~Ai~~~~~  473 (567)
                      ....|..+++..     ++..|+..|.+|.+.-..+                 +.+++|.||..-.   ++..|..+|..
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------------a~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------------AQYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHcCCccccHHHHHHHHHH
Confidence            446777777642     7888999999998764332                 2668888888765   67899999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 008400          474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID  512 (567)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l----~~~~~A~~~~~~al~l~  512 (567)
                      |...  .+..|++++|.||..-    .+...|..++++|-+..
T Consensus       354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8764  6889999999998764    57899999999999987

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.80  E-value=0.74  Score=27.24  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIK  506 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~  506 (567)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356667777777777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.38  E-value=3.1  Score=32.12  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      ..|..+-.++..+=+.|+|.+|+.+|..|++++..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999998754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.44  E-value=18  Score=40.27  Aligned_cols=117  Identities=20%  Similarity=0.086  Sum_probs=87.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-------CCC----hHHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (567)
                      +..+.-.|-.....+..++|.+.+.++++......       ..+    .+.......++..++..++.|.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            44455557777778888899999999998876533       111    1233445667788888999999999999999


Q ss_pred             HHHHHHHhccC---C------CCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCC
Q 008400          468 EKLCTKVLDLD---S------RNVKALYRRAQAYIQMADLDLAEFDIK--------KALEIDPDN  515 (567)
Q Consensus       468 i~~~~~al~~~---p------~~~ka~~~~a~a~~~l~~~~~A~~~~~--------~al~l~P~n  515 (567)
                      ......+....   |      ..+..+|-.|..+...|+.+.|...|.        .+....+.+
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~  445 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR  445 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence            99988876542   2      247889999999999999999999998        555555554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.43  E-value=3.2  Score=32.16  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      ..|..+..+|..+=+.|+|.+|+.+|..||+.+..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34677778889999999999999999999998654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=86.38  E-value=4  Score=45.58  Aligned_cols=88  Identities=11%  Similarity=0.077  Sum_probs=70.3

Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      ..++|.+|+..|.++++..|+...|....|..+.++|.+++|..+++..-.+-+++......+..|.+.+++..+. -..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~-~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA-VHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH-HHH
Confidence            3578999999999999999999999999999999999999999888877777777777777777787777665542 235


Q ss_pred             HHHhhHhhh
Q 008400          540 YGNMFAKMK  548 (567)
Q Consensus       540 ~~~~f~~~~  548 (567)
                      |.+...+..
T Consensus       100 Ye~~~~~~P  108 (932)
T KOG2053|consen  100 YERANQKYP  108 (932)
T ss_pred             HHHHHhhCC
Confidence            555544433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.31  E-value=16  Score=36.89  Aligned_cols=91  Identities=11%  Similarity=0.131  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HH-HHHHHHHHHH
Q 008400          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM-KE-YNKKEAKFYG  541 (567)
Q Consensus       464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~-~~-~~~~e~~~~~  541 (567)
                      .+..+..+++||+.+|++.+.+..+-.+.....+-++..+-+++++..+|++..++..+-...+.. .. .-..-+..|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            466778889999999999999999989999999999999999999999999987777665543331 11 1234567888


Q ss_pred             HhhHhhhhccccc
Q 008400          542 NMFAKMKSRAQGG  554 (567)
Q Consensus       542 ~~f~~~~~~~~~~  554 (567)
                      +.++.+.......
T Consensus       127 ~~l~~L~~~~~~~  139 (321)
T PF08424_consen  127 KCLRALSRRRSGR  139 (321)
T ss_pred             HHHHHHHHhhccc
Confidence            8888887666543

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.97  E-value=2.5  Score=43.81  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 008400          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLE  521 (567)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~--n~~~~~~  521 (567)
                      .-.+.+++..|-||+.+++|.+|++.+..+|..-...-..++.+..-+-. .+..|+....+--++.+.|.  +..+...
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~  240 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ  240 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            34566789999999999999999999999876421111122222222222 34456666777777788886  4444444


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHhhHhh
Q 008400          522 YKT-LKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       522 l~~-~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      ++. ...+..+-+..+-..|..+|..-
T Consensus       241 lkeky~ek~~kmq~gd~~~f~elF~~a  267 (404)
T PF10255_consen  241 LKEKYGEKMEKMQRGDEEAFEELFSFA  267 (404)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence            432 23333333334566888888754

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=85.50  E-value=6.3  Score=33.11  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      |-.+--....+...|+|++++..-.+||.+........+++.    .+-+.+-+++|.+.-.+|+.++|+..++.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344555667788899999999999999999877654433322    234556789999999999999999999988553

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.48  E-value=5.9  Score=30.42  Aligned_cols=35  Identities=26%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      ..|..+-.++..+=+.|+|.+|+.+|+.|++.+..
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45777888899999999999999999999998754

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=85.21  E-value=4.6  Score=41.55  Aligned_cols=102  Identities=22%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc--------------
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--------------  477 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~--------------  477 (567)
                      ...|+++.+.|..++.....+.-   -..-......+..++.++.++..+|++..|-+.+++||-.              
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp~~l---~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDPNAL---INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCHHHH---HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            45677788888877764311000   0011222345667889999999999999999999998631              


Q ss_pred             CCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Q 008400          478 DSR------------N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR  516 (567)
Q Consensus       478 ~p~------------~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-n~  516 (567)
                      ++.            |   -.|+++....+...|-+..|.++++-.+.+||. |+
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            111            1   368999999999999999999999999999999 55

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.04  E-value=4.9  Score=35.17  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=33.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      .....+.+|+.++..|+|.-|...++.++..+|+|.+++.+...+...+...
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            3456666777777777777777777777777777777777666665555433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=84.99  E-value=28  Score=31.10  Aligned_cols=112  Identities=13%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      ...+.+......+.++..++...+...--+-|.....               -.--|..++..++|.+|+..++.+.+-.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            4455666666777778877766665433333333322               4456888999999999999999999988


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      |..+-+--.+|.|+..+++.+= ..+-..+++..+ +.....+.+.+..
T Consensus        75 ~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   75 PGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA  121 (160)
T ss_pred             CCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence            9888777778899999988641 112234455443 5556666555533

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=84.95  E-value=8.7  Score=39.09  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=76.0

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH---hccCCCC
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV---LDLDSRN  481 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a---l~~~p~~  481 (567)
                      .+..+|+.|+..++-...+.+-+..|                    |-.++..|...+--+.++.-++++   -.+.|+|
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~eP--------------------HP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn  328 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKAEP--------------------HPDIALLYVRARSGDTALDRLKRAKKLESLKPNN  328 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhcCC--------------------ChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence            34556666666666666665554433                    456777777777767777766665   4567999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      ....+.++.+-+.-|+|..|...-+.+...+|... +..++..+...
T Consensus       329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeA  374 (531)
T COG3898         329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEA  374 (531)
T ss_pred             hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhh
Confidence            99999999999999999999999999999999873 45555555443

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.81  E-value=5.2  Score=30.80  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      +..|..+..+|...=+.|+|.+|+..|..+++++..
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            345677788888888899999999999999998754

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.58  E-value=12  Score=33.01  Aligned_cols=82  Identities=11%  Similarity=-0.068  Sum_probs=59.3

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +.....+.+...+..++.......--+.|+++..-.--|..|...|+|++|+..|+...+-.+...-.+.++..|...++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444455557777777777777767778888887888888888888888888888877777666777777777766554


Q ss_pred             HH
Q 008400          531 EY  532 (567)
Q Consensus       531 ~~  532 (567)
                      +-
T Consensus        93 Dp   94 (153)
T TIGR02561        93 DA   94 (153)
T ss_pred             Ch
Confidence            43

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.54  E-value=9.1  Score=37.57  Aligned_cols=54  Identities=19%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             HHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK  507 (567)
Q Consensus       454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  507 (567)
                      .+.-.+..+++..|...+..++..+|.+..+..-++.||...|+.+.|...|..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344555789999999999999999999999999999999999999877666543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.50  E-value=1.5  Score=28.74  Aligned_cols=29  Identities=17%  Similarity=0.148  Sum_probs=26.3

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +|..+|.+-+..++|.+|+.++.++|++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.20  E-value=11  Score=41.96  Aligned_cols=63  Identities=16%  Similarity=0.057  Sum_probs=48.9

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhcc---------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL---------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKK  507 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~---------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  507 (567)
                      .+|.-.|+..-..|+.+.|+.+|..|-..                     ...+-.|.|.+|+-|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45666677777788888888888877432                     244567899999999999999999999987


Q ss_pred             HHHh
Q 008400          508 ALEI  511 (567)
Q Consensus       508 al~l  511 (567)
                      |..+
T Consensus       993 Aqaf  996 (1416)
T KOG3617|consen  993 AQAF  996 (1416)
T ss_pred             HHHH
Confidence            7543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=84.14  E-value=14  Score=38.05  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=73.5

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHhCCCCHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQ---MADLDLAEFDIKKA-LEIDPDNRDVK  519 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~----~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~a-l~l~P~n~~~~  519 (567)
                      ..+..|+=.+|...++|+.-++..+..-.+    -++.....+..|.|+-+   .|+.++|+..+..+ ....+.+.+..
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            344668888999999999999988887665    34567778888999999   99999999999994 45566677888


Q ss_pred             HHHHHHHHHHHH--------HHHHHHHHHHHhhH
Q 008400          520 LEYKTLKEKMKE--------YNKKEAKFYGNMFA  545 (567)
Q Consensus       520 ~~l~~~~~~~~~--------~~~~e~~~~~~~f~  545 (567)
                      -.++++.+.+-.        ...+.-.+|++-|.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            888887665422        22334457777775

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.60  E-value=4.9  Score=30.94  Aligned_cols=36  Identities=25%  Similarity=0.118  Sum_probs=31.1

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      +..|..+..+|...=..|+|++|+..|..||+++-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456778888889999999999999999999998654

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=83.58  E-value=21  Score=36.48  Aligned_cols=108  Identities=19%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~  488 (567)
                      ....|+|+.|++..........-       +....+..+..++...|... -.-+...|..+..+++++.|+.+-+-.--
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH
Confidence            34456677766666554432111       11122333344343333333 33468999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       489 a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      +++|+..|+..++-..++.+-+.+|-- ++...+..+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePHP-~ia~lY~~a  305 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPHP-DIALLYVRA  305 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCCh-HHHHHHHHh
Confidence            999999999999999999999998864 455555443

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.93  E-value=4.9  Score=30.24  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      +.|..+..+|..+=+.|+|++|+..|.+|+..+..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            45777788888888999999999999999998653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=82.92  E-value=3.9  Score=43.05  Aligned_cols=74  Identities=18%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l---~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      ...+..|+.+|.+++..-|.....|.++|.++++.   ++--.|+.++..|++++|....++-.|.++...+....+
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            35678899999999999999999999999999986   466789999999999999998777777777666665554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=82.92  E-value=27  Score=38.87  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             HHhhhhhhhhHHH-hcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          398 AAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       398 ~a~~~~~~G~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      .|......|..++ ...+++.|..+.++++.+... ...        ..++..+.+-++.++.+.+... |+..|+++++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~  127 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE  127 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence            4666778888888 589999999999999988765 222        2445555666688888887776 9999999988


Q ss_pred             cCCC----CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 008400          477 LDSR----NVKALYRRAQAYIQ--MADLDLAEFDIKKALEID--PDNRDVKLEYK  523 (567)
Q Consensus       477 ~~p~----~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~--P~n~~~~~~l~  523 (567)
                      .-.+    ...-.|++-++.+.  .+++..|+..++....+.  ..++.+.....
T Consensus       128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~  182 (608)
T PF10345_consen  128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS  182 (608)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence            6554    45556666544333  369999999999998876  45655444433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.62  E-value=6.1  Score=30.34  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      +..|..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456778888899999999999999999999998653

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=82.04  E-value=28  Score=34.37  Aligned_cols=105  Identities=24%  Similarity=0.085  Sum_probs=73.5

Q ss_pred             hhhhhhhHHHh----cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-----c--CHHHHHH
Q 008400          401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK  469 (567)
Q Consensus       401 ~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~Ai~  469 (567)
                      .....|..++.    ..++.+|...|.+|.+.-....              ..+.++++.+|..-     -  +...|+.
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~  176 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY  176 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence            44556666665    4489999999999987633211              22355666666653     1  3347899


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      .+.++-...  ++.+.+++|.+|..    ..++.+|..+|.+|.+...  ......+.
T Consensus       177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            998887764  88999999988865    4589999999999999875  33444444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.00  E-value=10  Score=35.52  Aligned_cols=69  Identities=14%  Similarity=0.065  Sum_probs=58.8

Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      -.++.+...+||.....-++.+|.+.-.-..+-+.|.-.|+|++|...++-+-+++|+...-...++.+
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l   78 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL   78 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            456778899999999999999999988777788889999999999999999999999987555555443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.40  E-value=11  Score=29.24  Aligned_cols=66  Identities=17%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC------CCChHHHHHHHHHHHHHHhhHHHHHHhc
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL  461 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~e~~~~~~~~~~~~~~nla~~~~k~  461 (567)
                      .+.|-...++|..+=..|+.++|+.+|+++++.+....      ....++++....+..+.-.|+..+-.++
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677778888888888999999999999999876432      2234667777777777777766665443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=81.35  E-value=12  Score=38.52  Aligned_cols=53  Identities=15%  Similarity=0.311  Sum_probs=43.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       487 ~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      .+..||+.+++.+.|+....+.+.++|.+..-+...+.|.+.+..+.++.+..
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999554445556777788887766543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.25  E-value=71  Score=36.29  Aligned_cols=109  Identities=17%  Similarity=0.044  Sum_probs=78.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ....-..-.+=.+.-..+|.+|-....++...++.......      ..+.....--.|.+.+..++++.|++.++.++.
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ------GDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            33334444555666678899998888888877665321111      112222233456777788999999999999999


Q ss_pred             cCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          477 LDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       477 ~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      .-|.+     .-++...|.++.-.|++++|......+.++
T Consensus       487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            87765     467888999999999999999999998887

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=81.22  E-value=20  Score=34.20  Aligned_cols=119  Identities=15%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH-HHH-HHHHHHHhc-cC-CCCHHH
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY-KQA-EKLCTKVLD-LD-SRNVKA  484 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~-~~A-i~~~~~al~-~~-p~~~ka  484 (567)
                      +|..|+|+.|++...-||+..-..+...   ......+...-.++-|....+.|+. +-. ...+..+.. .+ |+.+.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence            4557999999999999998754333210   0011122233344555556666641 111 111222211 11 344444


Q ss_pred             HH--HHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          485 LY--RRAQAYI---------QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       485 ~~--~~a~a~~---------~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      -+  -.|.+++         ..++...|+..|++|+.++|+- -++..+.++.++++.
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~  226 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence            44  4455553         3467889999999999999775 477777777777653

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.67  E-value=9.8  Score=29.11  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=29.8

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      +..|..+...|...=+.|+|++|+.+|..|++.+..
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345666777888888899999999999999998654

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=80.45  E-value=5.4  Score=39.14  Aligned_cols=62  Identities=19%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      |+.+|.+|+.+.|.+-..|..+|..+...++.-.|+-+|-+++-..--.+.++..|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997654456666666665444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=80.23  E-value=14  Score=43.31  Aligned_cols=108  Identities=17%  Similarity=0.075  Sum_probs=80.4

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+.+++..+..+.+.+++++|+..-.+|.-+.+.......       .-....|.|++...+..++...|+..+.+++.+
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds-------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS-------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC-------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            4566777888888889999998888887766554332211       112334888999888999999999999998764


Q ss_pred             --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          478 --------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       478 --------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                              .|.-.-..-+++..+..+++++.|+.+++.|+++.
T Consensus      1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                    24334455688888899999999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	567
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-149
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-145
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		2e-30
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		5e-55
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		9e-55
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-51
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-49
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-34
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-23
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-12
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-32
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		4e-13
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		7e-29
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-09
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		5e-28
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		1e-12
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-28
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		4e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		4e-13
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		6e-27
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-13
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		6e-27
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-13
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		7e-26
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		8e-13
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		8e-26
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		9e-13
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		8e-26
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		9e-13
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		9e-26
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		9e-13
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		9e-25
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		8e-09
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		9e-25
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		2e-05
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-24
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		3e-09
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		2e-24
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-06
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		8e-07
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-24
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-24
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		4e-24
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		8e-09
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		4e-24
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		9e-09
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		4e-24
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		8e-09
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		6e-24
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		1e-08
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		6e-24
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-06
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		8e-24
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		7e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		9e-24
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		2e-08
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		9e-24
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-08
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-23
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		1e-08
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-23
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		3e-08
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-23
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-06
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		3e-23
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		4e-08
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		9e-23
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		1e-08
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-22
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		4e-09
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		3e-22
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		3e-08
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		5e-22
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		1e-04
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		6e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-04
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		6e-21
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		1e-09
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		5e-20
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		3e-10
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		5e-20
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		3e-10
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		7e-18
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		3e-13
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		2e-17
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		2e-17
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		4e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		7e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		1e-12
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		4e-14
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		9e-14
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-12
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		1e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		2e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		5e-06
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		2e-10
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		5e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-09
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		5e-04
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		3e-07
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		5e-04
3oe2_A	219	1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran		3e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		2e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		3e-04
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-06
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		3e-06
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		4e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		1e-05
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		5e-04
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		2e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-04
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		3e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-04
1wao_1	477	Pp5 Structure Length = 477		3e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  524 bits (1350), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/363 (74%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 17  KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 76
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 77  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 136
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 137 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 196
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 197 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 256
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 257 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 315
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KE
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKE 374
Query: 387 SWD 389
           SWD
Sbjct: 375 SWD 377

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  513 bits (1321), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 2/358 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 299
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 166 WENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKV 221
           W+ P+  DEV V+Y   L DG     +    D  +F +  G       + +KTMKKGE  
Sbjct: 24  WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 83
Query: 222 LLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281
           L  + P+  +GE     SG+   +P NATLQ  +EL+SW +V +I  D  + KKILKEGD
Sbjct: 84  LFTIPPELAYGE-----SGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGD 138
Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
            +E P +   V VK   +L+DGTV  K       +  EF   +  +   L +AV TMKK 
Sbjct: 139 KWENPKDPDEVFVKYEARLEDGTVVSKS------EGVEFTVKDGHLCPALAKAVKTMKKG 192
Query: 342 EVALLTIAPEYAFGSA--ESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           E  LL + P+Y FG     +  E   VPPN+++  ++ELVS++   E  D
Sbjct: 193 EKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGD 242

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  212 bits (539), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 209/386 (54%), Gaps = 19/386 (4%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y  +L +G     +    +   F++  G         V TMKKGE   
Sbjct: 45  ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     A+G+   +P NATL   +EL+ +K   ++ +D  +I++  + G+G
Sbjct: 105 LLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G VF  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           ++Y +A + C K L LDS N K LYRR +A + M + + A+ D +K LE++P N+  +L+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547
               ++K KE+N+++ + Y NMF K 
Sbjct: 391 IFMCQKKAKEHNERDRRTYANMFKKF 416

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  211 bits (537), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 19/386 (4%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +    +   F++  G         V TMK+GE   
Sbjct: 45  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 105 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           ++Y +A + C K L LDS N K LYRR +A + M + + A+ D +K LE++P N+  +L+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547
               ++K KE+N+++ + Y NMF K 
Sbjct: 391 ISMCQKKAKEHNERDRRIYANMFKKF 416

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/287 (36%), Positives = 174/287 (60%), Gaps = 13/287 (4%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFEL 248
Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 171/287 (59%), Gaps = 13/287 (4%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+   +K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+ N+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
               PE AYG +GS P IP NATL F++ELL +                      + NP 
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 167
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
           +   V ++ E R    M       V FTV +G  H  P  + KA++ M++ E+ +L + P
Sbjct: 168 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 225
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +YGFGE GK   G    + PNA L   + L S++   E
Sbjct: 226 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKE 259

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +    +   F++  G         V TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 162
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 163 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 216
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+
Sbjct: 217 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV-XXXXXXXXXXXXXXXXXXXWENP 169
            T  PE AYG +GSPP IPPNATL F+VEL  +                       +  P
Sbjct: 125 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKP 184
Query: 170 KDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVK 226
            +   V V  E   +D +   +   + F + +G        L +A++ M+KGE  ++ +K
Sbjct: 185 NEGAIVEVALEGYYKDKLFDQRE--LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLK 242
Query: 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           P Y FG  GK        +PPNA L+  L L S++   E
Sbjct: 243 PSYAFGSVGKEKF----QIPPNAELKYELHLKSFEKAKE 277

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 25/232 (10%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y   L DG      + + D   F +  G        A+ TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD--DKKVIKKILKEG 280
           +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++T+  D  +I++I   G
Sbjct: 125 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 178
Query: 281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
           +G+ +PNEGA+V+V L G  +D  +F       +++   F+  E + +D   GL+RA+  
Sbjct: 179 EGYAKPNEGAIVEVALEGYYKD-KLF-------DQRELRFEIGEGENLDLPYGLERAIQR 230
Query: 338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SFEK KESW+
Sbjct: 231 MEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 107
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 160

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 66/90 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD G+ TM  GE A+FT
Sbjct: 40  PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 274 KKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR 333
           KK+L  GDG  +P  G  V V   G+  DG  F         + F+F     +VI G D+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
            V TM   E AL TI  + A+G    +    V+PP +T+ +EVEL++
Sbjct: 86  GVATMTLGEKALFTIPYQLAYG---ERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 68/93 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIKGWD+G+ TM KGE A FT
Sbjct: 30  PTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           I  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 90  IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKF--DSSRDRGDQFSFNLGRGNVI 70
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESW 388
            G D  V TM K EVA  TI  +Y +G A S  +   +P  +T+ +EVEL  +  E  S 
Sbjct: 71  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK---IPGGATLIFEVELFEWSAEDISP 127
Query: 389 DMN 391
           D +
Sbjct: 128 DRD 130

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 158/323 (48%), Gaps = 22/323 (6%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP              + +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVD-----------SEAEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKES---WDMNTXXXXXXXXXXXXQGNTLFKAG 413
            E       VPP + + YEVE++ F++ KE     DM               GN+LFK  
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193
Query: 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV--ACNLNNAACKLKLKDYKQAEKLC 471
           K   A ++YE A+ Y+  D  F    K Q  AL V   C+LN AAC +KLK Y +A   C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
             VL  + +N KAL+RR +A  ++  +D A  D +KA +  PD++ ++ E + L E+ K 
Sbjct: 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313
Query: 532 YNKKEAKFYGNMFAKMKSRAQGG 554
             +K+ + Y  +F   K + +GG
Sbjct: 314 LYQKQKEMYKGIF---KGKDEGG 333

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 65/93 (69%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI + TMK GE   
Sbjct: 44  ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 104 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 86
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D AV TMK  E+  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 87  KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 139

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 49  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 109 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 92  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 45  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 88  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 140

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 59/89 (66%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTGTL DG  FDSSR R  PF+FT+G+G VI+GWD G+  M  G+ A   
Sbjct: 17  PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
             P+ AYG  G P  IPPNATL FDVELL
Sbjct: 77  CSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L  GD    P  G V  V   G L DG VF         + F F     +VI G D  V 
Sbjct: 8   LAAGDEATYPKAGQVAVVHYTGTLADGKVF--DSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A L  +P+YA+G   S+    V+PPN+T+ ++VEL+  E
Sbjct: 66  QMSVGQRAKLVCSPDYAYG---SRGHPGVIPPNATLTFDVELLRVE 108

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G VIKGWD+GI  +  GE A  T
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           IP   AYG  G P  IPPN+TL FDVELL
Sbjct: 82  IPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +    I +I   GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGNVKIDRI-SPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSP-----FQC 54
Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                QVI G D  +  +   E A LTI   YA+G    +    ++PPNST+ ++VEL+
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELL 110

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPPNATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFVLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PPN+T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPNATLIFDVELLKLE 107

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G+VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGHVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 111

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G   ++    V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYG---ARGAAGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF+F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    FEF      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 18  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 78  ISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 9   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 66
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 67  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 109

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKAGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 89
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 90  QLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFK 321
           +++ +T +  +  + L EG G E    G  V V   G L DG  F      +    F F 
Sbjct: 4   SMTVVTTESGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFV 60
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 61  LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 115

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 35  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 92  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWAEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWQEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRD++ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      ++ + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDKNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGVP---GIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
           +  GDG   P  G    V   G L+DG    KK  S  ++   F+F   +++VI G +  
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKMDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +F SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQ-LFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV 366
             G S++    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+
Sbjct: 140 --GSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVI 194
Query: 367 PPNSTVHYEVELV 379
           PPN+T+ +EVEL+
Sbjct: 195 PPNATLVFEVELL 207

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
           +  GDG   P  G    V   G L+DG    KK  S  ++   F+F   +++VI G +  
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKVDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G++ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGFEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G + G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI GL+  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGLEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T
Sbjct: 16  PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143
             P++AYG +G P  IPPNATL FDVELL+ 
Sbjct: 76  CTPDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P +G    V   G LQ+G  F      +  + F+F+  +++VI G +    
Sbjct: 7   ISPGDGRTFPKKGQTCVVHYTGMLQNGKKF--DSSRDRNKPFKFRIGKQEVIKGFEEGAA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LT  P+ A+G+        V+PPN+T+ ++VEL++ E
Sbjct: 65  QMSLGQRAKLTCTPDVAYGATGHP---GVIPPNATLIFDVELLNLE 107

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +GE     IP 
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           EL YGE G+PP IP  ATL F+VELL
Sbjct: 69  ELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344
           +  +G V+ +   GKL+DGT F       + Q F F     QVI G D+ ++ M + E  
Sbjct: 5   KSRKGDVLHMHYTGKLEDGTEF--DSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR 62
Query: 345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            L I  E  +G   +  +   +P  +T+ +EVEL+  E+  E
Sbjct: 63  KLVIPSELGYGERGAPPK---IPGGATLVFEVELLKIERRTE 101

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDY 464
           GNT FK+  +  A K+Y K ++Y+E   +   D +  + + + ++C LN  ACKLK+ D+
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           + A   C + L++D  N KALYRRAQ +  + + D A  D+KKA EI P+++ ++ E   
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349
Query: 525 LKEKMKEYNKKEAKFYGNMFA 545
           +K+K+K    KE   Y  MFA
Sbjct: 350 VKQKIKAQKDKEKAAYAKMFA 370

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+       +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLG---YGAGGAGGVIPPNATLVFEVELL 111

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSSR+R+ PFKF LGQG VIKGWDI + +M K E  
Sbjct: 31  NAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKC 90
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
              +  +  YGE G   +IP N+ L F++EL+S+
Sbjct: 91  SVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 266 ITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKT 322
           +T+D  V+K IL++G+G E   P +G  V V  +GKL+  G VF      E    F+F  
Sbjct: 11  LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVF--DSSRERNVPFKFHL 68
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +VI G D  V +M KNE   + +  +Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES---IPGNSVLIFEIELISF 124

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++       +  + P  F +G G VI+GWD  + TM K
Sbjct: 17  PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPNA L F+VEL+
Sbjct: 77  GEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF           +  +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 116

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
            P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW   ++ M++G+    
Sbjct: 52  APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWTEALQLMREGDRWRL 109
Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            IP +LAYG +G    IPP + L+FDVEL+S
Sbjct: 110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRST-------PFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++   S+       P  F +G G VI+GWD  + TM K
Sbjct: 20  PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPN  L F+VEL+
Sbjct: 80  GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK    
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDID 119

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 53  PE--NGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDI------GIKTMK 104
           PE   G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD       GI  M 
Sbjct: 25  PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML 84
Query: 105 KGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
            G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 85  TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE---EKKQAKALKVACNLNNAACKLKL 461
           +GN  FK  +   A  +Y++A+ +  +   + D+   +KK  K ++++CNLN A C  K 
Sbjct: 44  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK--KNIEISCNLNLATCYNKN 101
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           KDY +A    +KVL +D  NVKALY+   A +    L+ A+ ++ KA  ++P+N D++  
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAK 546
           Y+    K+KE  KK+   +G MF K
Sbjct: 162 YELCVNKLKEARKKDKLTFGGMFDK 186

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 12/112 (10%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +GN LFK G Y  A   Y +A          G +   Q +A+    + N AAC LKL+DY
Sbjct: 34  EGNELFKCGDYGGALAAYTQA---------LGLDATPQDQAV---LHRNRAACHLKLEDY 81
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
            +AE   +K ++ D  +VKALYRR+QA  ++  LD A  D+++ + ++P N+
Sbjct: 82  DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 54  ENGDEVEVHYTGTL-LDGTQFDSSR--DRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + GD + VHY G L  DG+ F S+   +   P  FTLG    +KGWD G+K M  GE   
Sbjct: 30  KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPP L YG+ G    IPP +TL F+++LL
Sbjct: 90  LIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 59  VEVHYTGTLLDGTQ-FDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
           V V Y+G L    + FDS+  R TP    LG+   + G ++G+ +M++GE A F   P  
Sbjct: 47  VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 118 AYGESGSPPTIPPNATLQFDVELLSW 143
           AYG  G PP IPPN T+ F++ELL +
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELLDF 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ------DGTVFVKKGHSEEEQL 317
           +I+ D+ V+K +++EG G    P+  A V VK  G L+      D   F K         
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRL----- 73
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
              K  E+  + G++  +++M++ E+A     P YA+G+        ++PPN+TV +E+E
Sbjct: 74  --MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIE 128
Query: 378 LVSF 381
           L+ F
Sbjct: 129 LLDF 132

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 121 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 178
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 45  PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 102
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 103 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y +A + Y+KA++    + S                NL NA    K  DY+
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNNAS-------------AWYNLGNAY--YKQGDYQ 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+LD  N KA YRR  AY +  D   A  D +KALE+DP+N   K      
Sbjct: 61  KAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 28  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 83
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 84  ADSKYCYGPQGRSPYIPPHAALCLEVTL 111

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 15  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 68
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 69  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 111

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 30  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 85
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 86  ADSKYCYGPQGRSPYIPPHAALCLEVTL 113

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 17  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 70
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 71  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 113

>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+    VEV Y G L DG  FD S   + P  F L   +VI GW   ++ M  G      
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP + AYG  G+   I P   L F++EL++
Sbjct: 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D +        A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPN-------NAEAW---YNLGNA--YYKQGDYD 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+LD  N +A Y    AY +  D D A    +KALE+DP+N + K      
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 34  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 89
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 90  ADSKYCYGPQGSRSPYIPPHAALCLEVTL 118

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 21  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 74
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 75  LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 118

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 386 ESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQ 442
           + W M              +GN L++ G    A+ +Y  A+   K ++     G  E  Q
Sbjct: 1   DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQ 60
Query: 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                    LN   CKL +++Y +    C+ +L+    NVKA ++R +A+  + +   A+
Sbjct: 61  LDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQ 120
Query: 503 FDIKKALEIDPDNRD-VKLEYKTLKEKMKEYNKKE-AKFYG 541
            D  K LE+DP     V  E + L+ ++++ ++++ A+F G
Sbjct: 121 ADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRG 161

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +GN  FK G Y  A + Y +AVK         D E     +       N AAC  KL ++
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYS-------NRAACLTKLMEF 63
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
           ++A   C   + LDS+ +K   R+A   + M +   A+   + AL++DP N + +
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 60  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 115
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 116 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 144

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 47  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 100
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 101 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 144

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 72  QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG--SPPTI 128
           +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELAYG+ G  S P +
Sbjct: 84  KFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV 143
Query: 129 PPNATLQFDVELLSW 143
           PP A L ++VE++ +
Sbjct: 144 PPMADLLYEVEVIGF 158

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP    +           +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVDSE-----------AEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            E       VPP + + YEVE++ F++ KE
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 405 QGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
           +GN L++ G    A+ +Y  A+   K ++     G  E  Q         LN   CKL +
Sbjct: 14  EGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVV 73
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           ++Y +    C+ +L+    NVKA ++R +A+  + +   A+ D  K LE+DP
Sbjct: 74  EEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA++                ++ +   NL NA    K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE-------------LDPRSAEAWYNLGNA--YYKQGDYD 52
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           NL NA    K  DY +A +   K L+LD  N +A Y    AY +  D D A    +KALE
Sbjct: 14  NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 511 IDPDNRDVKLEYKTLKEK 528
           +DP+N + K      K+K
Sbjct: 72  LDPNNAEAKQNLGNAKQK 89

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----GDEEKKQAKALKVACNLNNAACKL 459
           +GN LF    Y  A   Y  A+  +  DT       G+ E  +     +    N + C L
Sbjct: 17  KGNELFVQKDYKEAIDAYRDALTRL--DTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74
Query: 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-V 518
            + D  +AE+  ++VL  +  N KAL+RRA+A I    LD AE D+K  L   P     V
Sbjct: 75  NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134
Query: 519 KLEYKTLKEKMKEYNKKEAKFYGNMF 544
             E K + E+  E        Y  MF
Sbjct: 135 AREMKIVTERRAEKKADSRVTYSKMF 160

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA++               A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELY----------PNNAEAW---YNLGNA--YYKQGDYD 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+L   N +A Y    AY +  D D A    +KALE+ P+N + K      
Sbjct: 61  EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Query: 526 KEK 528
           K+K
Sbjct: 121 KQK 123

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           ++ ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   
Sbjct: 23  ESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTT 82
Query: 111 FTIPPELAYG 120
           F++ P+ A+G
Sbjct: 83  FSLEPDAAFG 92

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           QGN LF   KY  A+  Y +A+                   L      N A C LK++  
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQQP 59
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R
Sbjct: 60  EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q N  FKA  Y  A K Y +A+            E   + A+      N +   L+ + Y
Sbjct: 12  QANDYFKAKDYENAIKFYSQAI------------ELNPSNAIYYG---NRSLAYLRTECY 56
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
             A    T+ ++LD + +K  YRRA + + +     A  D +  +++ P ++D K++Y+ 
Sbjct: 57  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
Query: 525 LKEKMKE 531
             + +K+
Sbjct: 117 CNKIVKQ 123

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           QGN LF   KY  A+  Y +A+                   L      N A C LK++  
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQQP 54
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R
Sbjct: 55  EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	567
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-160
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-57
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-125
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	7e-63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-100
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-18
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-95
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-58
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	3e-29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-30
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-20
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	1e-66
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-26
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	1e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-65
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-63
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-27
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-19
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-63
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	1e-24
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-17
2ppn_A	107	FK506-binding protein 1A; high resolution protein	4e-63
2ppn_A	107	FK506-binding protein 1A; high resolution protein	2e-25
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-17
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-61
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-23
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	8e-16
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-61
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-25
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-18
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	3e-59
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-23
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	6e-16
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-58
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-26
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	4e-17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-58
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-58
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	7e-21
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-12
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	8e-57
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-26
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-56
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-32
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	9e-26
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-55
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	9e-30
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	3e-25
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-55
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-19
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	5e-12
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	5e-53
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-28
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	5e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	2e-52
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	7e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	9e-16
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	3e-52
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-29
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-22
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-51
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	4e-19
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	8e-14
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	2e-51
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-16
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-12
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-49
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	7e-18
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-10
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-48
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	4e-39
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-14
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	5e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-38
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-37
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	5e-13
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	3e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	4e-37
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-14
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	7e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-10
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	4e-19
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	1e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-09
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	3e-16
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	9e-05
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	3e-16
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-06
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	8e-16
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	4e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	9e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-09
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-14
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	3e-05
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	2e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-04
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	2e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	8e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-04

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  460 bits (1186), Expect = e-160
 Identities = 289/358 (80%), Positives = 318/358 (88%), Gaps = 2/358 (0%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG QGLKKKL+KEGEGWDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           +DI KDGGI KKILKEG+KWENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH +E++ FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEA 299

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  195 bits (496), Expect = 2e-57
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
             G+ KK+LKEGE W+ P+  DEV V+Y   L DG        + D  +F +  G     
Sbjct: 10  KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT 267
             + +KTMKKGE  L  + P+  +GE G         +P NATLQ  +EL+SW +V +I 
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSP-----PTIPANATLQFDVELLSWTSVRDIA 124

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D  + KKILKEGD +E P +   V VK   +L+DGTV        + +  EF   +  +
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVV------SKSEGVEFTVKDGHL 178

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA--VVPPNSTVHYEVELVSFEKEK 385
              L +AV TMKK E  LL + P+Y FG            VPPN+++  ++ELVS++   
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238

Query: 386 ESWDMNTEEK 395
           E  D     K
Sbjct: 239 EIGDDKKILK 248

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  375 bits (963), Expect = e-125
 Identities = 140/425 (32%), Positives = 233/425 (54%), Gaps = 19/425 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDG 202
               KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G
Sbjct: 25  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262
                    V TMK+GE   L  KP+Y +G  G         +P NATL   +EL+ +K 
Sbjct: 85  QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS-----LPKIPSNATLFFEIELLDFKG 139

Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT 322
             ++ +D  +I++  ++G+G+  PNEGA V++ L G+   G +F  +  +     F    
Sbjct: 140 -EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCRDVA-----FTVGE 192

Query: 323 DEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            E+  +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SF
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSF 250

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK 310

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
            +++  +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHERRQ 561
           + D +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K   +     A++   
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMG 430

Query: 562 QGMTE 566
           +  +E
Sbjct: 431 KKTSE 435

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  212 bits (541), Expect = 7e-63
 Identities = 100/262 (38%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMK+GE       PE AYG +GS P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 128 IPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM 187
           IP NATL F++ELL +   +D+ +DGGII++  ++GE + NP +   V ++ E R    M
Sbjct: 122 IPSNATLFFEIELLDFK-GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRM 180

Query: 188 VVGKADGVEFTVKDGHF---CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244
              +   V FTV +G        + KA++ M++ E+ +L + P+YGFGE GK     +  
Sbjct: 181 FDCR--DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFG 234

Query: 245 VPPNATLQIALELVSWKTVSEI 266
           + PNA L   + L S++   E 
Sbjct: 235 IEPNAELIYEVTLKSFEKAKES 256

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  306 bits (784), Expect = e-100
 Identities = 111/306 (36%), Positives = 184/306 (60%), Gaps = 13/306 (4%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70

Query: 324 EEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E +   +  GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKS 128

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248

Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRAHERR 560
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++       +A    
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASS 308

Query: 561 QQGMTE 566
               T+
Sbjct: 309 GDHPTD 314

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  101 bits (253), Expect = 9e-24
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---N 91
            + G+ +++   GEG+  P  G  VEV   G   D   FD         +F +G+G   +
Sbjct: 23  EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLD 76

Query: 92  VIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELLSWTSVKDI 149
           +  G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+ 
Sbjct: 77  LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG---HF 204
            + +DGGII++I   GE +  P +   V V  E   +D +   +   + F + +G     
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDL 77

Query: 205 CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264
              L +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 133

Query: 265 EITD 268
           E  +
Sbjct: 134 ESWE 137

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  290 bits (745), Expect = 4e-95
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
            A EM A       AP+   G +     ++G+ K + +EG G + P  GD V VHYTG L
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
           LDGT+FDSS DR   F F LG+G VIK WDI I TMK GE    T  PE AYG +GSPP 
Sbjct: 82  LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK 141

Query: 128 IPPNATLQFDVELLS-WTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186
           IPPNATL F+VEL           +DGGII++I   GE +  P +   V V  E   +D 
Sbjct: 142 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK 201

Query: 187 MVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243
           +   +   + F + +G        L +A++ M+KGE  ++ +KP Y FG  GK     + 
Sbjct: 202 LFDQR--ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KF 255

Query: 244 AVPPNATLQIALELVSWKTVSE 265
            +PPNA L+  L L S++   E
Sbjct: 256 QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  195 bits (497), Expect = 2e-58
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 35/283 (12%)

Query: 127 TIPPNATLQFDVELLSWTSVK------------DICKDGGIIKKILKEGEKWENPKDLDE 174
            + P  +     E+ +  S                 +D G++K I +EG   E P   D 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 175 VLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
           V V+Y   L DG      + + D   F +  G        A+ TMK GE   +  KP+Y 
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 132

Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVS-WKTVSEITDDKKVIKKILKEGDGFERPNEG 289
           +G  G         +PPNATL   +EL           +D  +I++I   G+G+ +PNEG
Sbjct: 133 YGSAGSP-----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEG 187

Query: 290 AVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVITMKKNEVALL 346
           A+V+V L G  +D  +F ++          F+  E + +D   GL+RA+  M+K E +++
Sbjct: 188 AIVEVALEGYYKDK-LFDQRE-------LRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 239

Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
            + P YAFGS   ++    +PPN+ + YE+ L SFEK KESW+
Sbjct: 240 YLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  115 bits (290), Expect = 3e-29
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 234 KGKSASGNEGAVPPNATLQIALELVSWKTVSE------------ITDDKKVIKKILKEGD 281
                  +   + P  +   A E+ + ++ ++               D+ V+K I +EG 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGT 62

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITM 338
           G E P  G  V V   G L DGT F   + +        F F   + +VI   D A+ TM
Sbjct: 63  GTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRK-----DKFSFDLGKGEVIKAWDIAIATM 117

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE 397
           K  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E  + + +      
Sbjct: 118 KVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRR 173

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  278 bits (712), Expect = 2e-89
 Identities = 100/343 (29%), Positives = 163/343 (47%), Gaps = 26/343 (7%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
              E  ++         E  +     EG VPP    +                D+KV K+
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQ-----EGNVPPKVDSEA------------EVLDEKVSKQ 54

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT-DEEQVIDGLDRA 334
           I+KEG G  +P++ +   +      ++     +    E++   E     E++ + GL   
Sbjct: 55  IIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQP-IELVLGKEKKELAGLAIG 112

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK---ESWDMN 391
           V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F++ K      DM 
Sbjct: 113 VASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKALKVA 449
            EE+I AA ++K  GN+LFK  K   A ++YE A+ Y+  D  F    + +  A A+K  
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
           C+LN AAC +KLK Y +A   C  VL  + +N KAL+RR +A  ++  +D A  D +KA 
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQ 552
           +  PD++ ++ E + L E+ K   +K+ + Y  +F        
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  120 bits (303), Expect = 2e-30
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 2   DEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEV 61
            E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       +
Sbjct: 14  QESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFL 72

Query: 62  HYTGTLLDGTQ-FDSSRDRSTPFKFTLGQ-GNVIKGWDIGIKTMKKGENAVFTIPPELAY 119
           HY     +    F+ +     P +  LG+    + G  IG+ +MK GE A+  +  ELAY
Sbjct: 73  HYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAY 132

Query: 120 GESGSPP--TIPPNATLQFDVELLSWTSVK 147
           G+ G+     +PP A L ++VE++ +   K
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETK 162

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 92.0 bits (228), Expect = 1e-20
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 104 KKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEG 163
              E+ + T    + + E      +PP    + +V             D  + K+I+KEG
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL------------DEKVSKQIIKEG 59

Query: 164 EKWENPKDLDEVLVNYEARLEDGMVV---GKADGVEFTV---KDGHFCPTLAKAVKTMKK 217
                P       ++Y A  ++          +     +   K+      LA  V +MK 
Sbjct: 60  H-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKS 118

Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271
           GE+ L+ V  +  +G++G  +      VPP A L   +E++ +    E      
Sbjct: 119 GERALVHVGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKEGKARSD 169

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  211 bits (540), Expect = 1e-66
 Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 29  GEEKEI---GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GE+ +I    + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F
Sbjct: 3   GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
            LG+GNVIKGWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W S
Sbjct: 63  NLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-S 121

Query: 146 VKDIC--KDGGIIK 157
            +DI   +DG I++
Sbjct: 122 AEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  103 bits (258), Expect = 3e-26
 Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D  V+K I KEG G  +P  G  VKV  +G L++GT F     +G       F F  
Sbjct: 10  PKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRG-----DQFSFNL 64

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
               VI G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  + 
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS 121

Query: 383 KEKESWDMN 391
            E  S D +
Sbjct: 122 AEDISPDRD 130

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G        + D   F +  G+   
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TM KGE     ++  YG+G+ G   S     +P  ATL   +EL  W      
Sbjct: 72  GWDLGVATMTKGEVAEFTIRSDYGYGDAG---SP--PKIPGGATLIFEVELFEWSAEDIS 126

Query: 267 TDDKKVIKK 275
            D    I +
Sbjct: 127 PDRDGTILR 135

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  211 bits (538), Expect = 2e-65
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 2/188 (1%)

Query: 363 LAVVPPNSTVHYEVELVSFEK-EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKR 421
           +     +       E + F+  +K  +D   EEK+++A   KE+GN  FK  +   A  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVK 60

Query: 422 YEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           Y++A+ +  +   + D+    + K ++++CNLN A C  K KDY +A    +KVL +D  
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALY+   A +    L+ A+ ++ KA  ++P+N D++  Y+    K+KE  KK+   +
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTF 180

Query: 541 GNMFAKMK 548
           G MF K  
Sbjct: 181 GGMFDKGP 188

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  203 bits (519), Expect = 1e-63
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 22  DAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRS 80
            A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+
Sbjct: 3   PATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN 62

Query: 81  TPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVEL 140
            PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P IP NATL F++EL
Sbjct: 63  EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIEL 122

Query: 141 LSW 143
           L +
Sbjct: 123 LDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  104 bits (262), Expect = 6e-27
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 15  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 69

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S      +P N+T+ +E+EL+ F+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126

Query: 383 KE 384
            E
Sbjct: 127 GE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 77  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 126

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  202 bits (517), Expect = 2e-63
 Identities = 56/111 (50%), Positives = 70/111 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL  
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +   V    +  GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRG-----SPFQC 54

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
                QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G      V +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+  
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRG---FP--GLIPPNSTLVFDVELLKV 112

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  201 bits (513), Expect = 4e-63
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =   99 bits (250), Expect = 2e-25
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           V  + +  GDG   P  G    V   G L+DG  F     +      + F+F   +++VI
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRN-----KPFKFMLGKQEVI 56

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            G +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 57  RGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG        +    +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G  G       G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATG---HP--GIIPPHATLVFDVELLKLE 107

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  197 bits (504), Expect = 2e-61
 Identities = 63/105 (60%), Positives = 75/105 (71%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
            L+KK++  G+G   P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD
Sbjct: 25  QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWD 84

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+ TM  GE A+FTIP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 85  QGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
           +T    +   ++ KK+L  GDG  +P  G  V V   G+  DG  F     +G     + 
Sbjct: 15  QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRG-----KP 69

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F+F     +VI G D+ V TM   E AL TI  + A+G         V+PP +T+ +EVE
Sbjct: 70  FQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP---PVIPPKATLVFEVE 126

Query: 378 LVS 380
           L++
Sbjct: 127 LLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
              + KK+L  G+    P+   +V V+Y+ R  DG        +    +FT+  G     
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V TM  GEK L  +  Q  +GE+G         +PP ATL   +EL++
Sbjct: 83  WDQGVATMTLGEKALFTIPYQLAYGERG---YP--PVIPPKATLVFEVELLA 129

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  197 bits (503), Expect = 4e-61
 Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P 
Sbjct: 66  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK 125

Query: 128 IPPNATLQFDVELLSW 143
           IP NATL F++ELL +
Sbjct: 126 IPSNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  100 bits (250), Expect = 5e-25
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 31  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 85

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 142

Query: 383 KE 384
            E
Sbjct: 143 GE 144

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 142

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  192 bits (489), Expect = 3e-59
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 26  MKVGEEKE----IGNQGLKKKLVKEGEGWD--TPENGDEVEVHYTGTLLD-GTQFDSSRD 78
           M   +E E      + G+ K ++K+G+  +   P+ G+EV VHY G L   G  FDSS D
Sbjct: 1   MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60

Query: 79  RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDV 138
           R+ PFKF L QG VIKGWDI + +M+K E  +  I     YG+ G   +IP N+ L F++
Sbjct: 61  RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120

Query: 139 ELLSWTSVK 147
           ELLS+  ++
Sbjct: 121 ELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 93.9 bits (234), Expect = 4e-23
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 14/127 (11%)

Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVF---VKKGHSEEEQLF 318
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF     +        F
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN-----VPF 65

Query: 319 EFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           +F  ++ +VI G D  V +M+KNE  L+ I   Y +G          +P NS + +E+EL
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIEL 122

Query: 379 VSFEKEK 385
           +SF + +
Sbjct: 123 LSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 12/124 (9%)

Query: 147 KDICKDGGIIKKILKEGEKWE--NPKDLDEVLVNYEARLED-GMV----VGKADGVEFTV 199
            ++  DGG+IK ILK+G++ E   PK  +EV V+Y  +LE  G V      +    +F +
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL 69

Query: 200 KDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + G         V +M+K EK L+ ++  YG+G++G    G   ++P N+ L   +EL+S
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG---CG--ESIPGNSVLLFEIELLS 124

Query: 260 WKTV 263
           ++ +
Sbjct: 125 FREL 128

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  190 bits (484), Expect = 2e-58
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 20  PDDAPMMKVGEEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSS 76
           P  +   ++ +      G++G+ K +++EG G D       V V Y+G L      FDS+
Sbjct: 7   PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSN 65

Query: 77  RDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
             R TP    LG+   + G ++G+ +M++GE A F   P  AYG  G PP IPPN T+ F
Sbjct: 66  YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLF 125

Query: 137 DVELLSWT 144
           ++ELL + 
Sbjct: 126 EIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  104 bits (261), Expect = 1e-26
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 242 EGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ 301
           EG   P  +L   L     + + +I+ D+ V+K +++EG G +     A V VK  G L+
Sbjct: 2   EGDDAPGQSLYERLS----QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLE 56

Query: 302 D-GTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA 357
                F     +           K  E+  + G++  +++M++ E+A     P YA+G+ 
Sbjct: 57  HMDRPFDSNYFRK-----TPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTL 111

Query: 358 ESQQELAVVPPNSTVHYEVELVSF 381
                  ++PPN+TV +E+EL+ F
Sbjct: 112 GCP---PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLED-GMV----VGKADGVEFTVKDG 202
           DI  D G++K +++EG   +       VLV Y   LE           +       + + 
Sbjct: 21  DISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED 79

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                +   + +M++GE      KP Y +G  G         +PPN T+   +EL+ +
Sbjct: 80  ITLWGMELGLLSMRRGELARFLFKPNYAYGTLG---CP--PLIPPNTTVLFEIELLDF 132

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  191 bits (486), Expect = 2e-58
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---DTSFGDEEKKQAKAL 446
              ++K+++    +++GN LF    Y  A   Y  A+  ++        G+ E  +    
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
            +    N + C L + D  +AE+  ++VL  +  N KAL+RRA+A I    LD AE D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 507 KALEIDPDNRD-VKLEYKTLKEKMKEYNKKEAKFYGNMF 544
             L   P     V  E K + E+  E        Y  MF
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  188 bits (479), Expect = 4e-58
 Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 47  GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106
           G        GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +G
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59

Query: 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDI 149
           E     IP EL YGE G+PP IP  ATL F+VELL      ++
Sbjct: 60  EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 86.8 bits (216), Expect = 7e-21
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 280 GDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           G    +  +G V+ +   GKL+DGT F   + +      Q F F     QVI G D+ ++
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQN-----QPFVFSLGTGQVIKGWDQGLL 54

Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            M + E   L I  E  +G   +      +P  +T+ +EVEL+  E+  E
Sbjct: 55  GMCEGEKRKLVIPSELGYGERGAP---PKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
              +  D + ++Y  +LEDG      + +     F++  G       + +  M +GEK  
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
           L +  + G+GE+G   +     +P  ATL   +EL+  +  +E+
Sbjct: 64  LVIPSELGYGERG---AP--PKIPGGATLVFEVELLKIERRTEL 102

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  185 bits (472), Expect = 8e-57
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTL 87
           G     K ++K+G+  + P+ GD V   YTGTL DGT FD++       +  + P  F +
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLSW 143
           G G VI+GWD  + TM KGE A   I PE AYG+ G P   IPPN  L F+VEL+  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  102 bits (256), Expect = 4e-26
 Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTD 323
             K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK  
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV-----------VGKADGVEFTVK 200
                K ILK+G+K   PK  D V   Y   L DG V              A  + F V 
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 201 DGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
            G       +A+ TM KGEK  L ++P++ +G+KG+        +PPN  L   +ELV  
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD----AKIPPNTKLIFEVELVDI 118

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  184 bits (468), Expect = 5e-56
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 29  GEEKE--IGNQGLKKKLVKEG-EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GEE    +GN  L+KK +  G  G   P  G  V VH   +L +GT+            F
Sbjct: 7   GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPTIPPNATLQFDVELLSWT 144
           TLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P IPP+A L  +V L +  
Sbjct: 63  TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 122

Query: 145 SVKDICKDG 153
              D+   G
Sbjct: 123 DRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  118 bits (299), Expect = 5e-32
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 265 EITDDKKVIKKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G  G  RP +G VV V L   L++GT        +EE    F   
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 65

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  VI  LD +V  M   E A++T   +Y +G   S+     +PP++ +  EV L +   
Sbjct: 66  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVD 123

Query: 384 EKE 386
             +
Sbjct: 124 RPD 126

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  101 bits (254), Expect = 9e-26
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +     ++
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDRPDL 127

Query: 267 TDD 269
              
Sbjct: 128 EMS 130

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  182 bits (464), Expect = 1e-55
 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 35  GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVI 93
           GN  L+KK +  G      P  G  V VH   +L +GT+            FTLG  +VI
Sbjct: 11  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVI 66

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144
           +  D+ +  M  GE A+ T   +  YG  G  P IPP+A L  +V L +  
Sbjct: 67  QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  112 bits (282), Expect = 9e-30
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G     RP +G VV V L   L++GT        +EE    F   
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 61

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  VI  LD +V  M   E A++T   +Y +G          +PP++ +  EV L +  
Sbjct: 62  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 99.6 bits (249), Expect = 3e-25
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 148 DICKDGGIIKKILKEGE-KWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
            L  +V  M  GE  ++    +Y +G +G+        +PP+A L + + L +  
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTLKTAV 117

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  181 bits (462), Expect = 3e-55
 Identities = 58/105 (55%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GLK + + EG G      G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD
Sbjct: 29  GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPP+L YG  G+   IPPNATL F+VELL 
Sbjct: 88  EGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
             ++ +T +  +  + L EG G      G  V V   G L DG  F     +        
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DP 72

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F F      VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVE
Sbjct: 73  FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVE 129

Query: 378 LVS 380
           L+ 
Sbjct: 130 LLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  + L EG   E  +    V V+Y   L DG        + D   F +  G     
Sbjct: 27  ESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 85

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V+ MK G    L + PQ G+G +G   +G  G +PPNATL   +EL+ 
Sbjct: 86  WDEGVQGMKVGGVRRLTIPPQLGYGARG---AG--GVIPPNATLVFEVELLD 132

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  177 bits (451), Expect = 5e-53
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
             E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       
Sbjct: 13  DQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCF 71

Query: 61  VHYTGTLLDGT-QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           +HY     +   +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELA
Sbjct: 72  LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131

Query: 119 YGESG--SPPTIPPNATLQFDVELLSWTSVKDI 149
           YG+ G  S P +PP A L ++VE++ +   K+ 
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  109 bits (275), Expect = 4e-28
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VF---VKKGHSEEEQLFEFK- 321
             D+KV K+I+KEG G  +P++ +   +      ++    F     +      Q  E   
Sbjct: 46  VLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQ-----QPIELVL 99

Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
             E++ + GL   V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYG-KEGNFSFPNVPPMADLLYEVEVIGF 158

Query: 382 EKEKES---WDMNTEEKIEAA 399
           ++ KE     DM  EE+I AA
Sbjct: 159 DETKEGKARSDMTVEERIGAA 179

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 86.8 bits (215), Expect = 5e-20
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 101 KTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160
                 E+ + T    + + E      +PP    + +V             D  + K+I+
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV------------LDEKVSKQII 56

Query: 161 KEGEKWENPKDLDEVLVNYEARLEDGMVV-----GKADGVEFTV-KDGHFCPTLAKAVKT 214
           KEG     P       ++Y A  ++          +   +E  + K+      LA  V +
Sbjct: 57  KEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115

Query: 215 MKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD 268
           MK GE+ L+ V  +  +G++G   + +   VPP A L   +E++ +    E   
Sbjct: 116 MKSGERALVHVGWELAYGKEG---NFSFPNVPPMADLLYEVEVIGFDETKEGKA 166

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  176 bits (449), Expect = 2e-52
 Identities = 61/128 (47%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 15  ADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFD 74
            D D+ +       G        GLK + + EG G      G  V VHYTG L DG +FD
Sbjct: 82  EDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFD 140

Query: 75  SSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATL 134
           SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP+L YG  G+   IPPNATL
Sbjct: 141 SSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATL 200

Query: 135 QFDVELLS 142
            F+VELL 
Sbjct: 201 VFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 87.2 bits (216), Expect = 7e-20
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
           K+  K + +++  Y         +  +  +  N  ++   E +   TV  +T +  +  +
Sbjct: 52  KRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTV--VTTESGLKYE 109

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLD 332
            L EG G      G  V V   G L DG  F     +        F F      VI G D
Sbjct: 110 DLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DPFAFVLGGGMVIKGWD 163

Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+ 
Sbjct: 164 EGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 78  DRSTPFKFTLGQGNVIKGWDIGIKTM-KKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
           D S+   F + +   ++           K  +++  +   +      +P  +        
Sbjct: 28  DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87

Query: 137 DVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKA 192
           +           +  + G+  + L EG   E  +    V V+Y   L DG        + 
Sbjct: 88  EAHREQIGGSTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRN 146

Query: 193 DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQ 252
           D   F +  G       + V+ MK G    L + PQ G+G +G +     G +PPNATL 
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA-----GVIPPNATLV 201

Query: 253 IALELVS 259
             +EL+ 
Sbjct: 202 FEVELLD 208

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  174 bits (443), Expect = 3e-52
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 10  ANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTL 67
           A E  A M+ P+ AP     E  +I GN  L+KK +  G      P  G  V VH   +L
Sbjct: 16  AREFLAAME-PEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PP 126
            +GT+            FTLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P
Sbjct: 75  ENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP 130

Query: 127 TIPPNATLQFDVELLSWTSVK 147
            IPP+A L  +V L +   ++
Sbjct: 131 YIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  113 bits (285), Expect = 1e-29
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-D 281
           +   P     + G  A     A+ P      A E   W    +I  +  + KK L  G  
Sbjct: 1   MGQPPAEEAEQPGALAREFLAAMEPEPAPAPAPE--EWL---DILGNGLLRKKTLVPGPP 55

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
           G  RP +G VV V L   L++GT        +EE    F   +  VI  LD +V  M   
Sbjct: 56  GSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLGDCDVIQALDLSVPLMDVG 109

Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E A++T   +Y +G   S+     +PP++ +  EV L +    +     +
Sbjct: 110 ETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +   +  
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDLEH 152

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  171 bits (436), Expect = 1e-51
 Identities = 46/128 (35%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
               E  +   GL       G G      G  ++ HY G L +G  FDSS +R  P  F 
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60

Query: 87  LGQGNVIKGWDIGI------KTMKKGENAVFTIPPELAYGESG-----SPPTIPPNATLQ 135
           +G G VIKGWD GI        M  G      IPPELAYG+ G         IPP + L 
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 136 FDVELLSW 143
           FD+E +  
Sbjct: 121 FDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           +       G G     +G ++K   +GKL++G VF     +G     +   F+    +VI
Sbjct: 14  LAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRG-----KPLTFRIGVGEVI 67

Query: 329 DGLDRAVI------TMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELVS 380
            G D+ ++       M       L I PE A+G   A  +    ++PP S + +++E + 
Sbjct: 68  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP- 206
             G+       G           +  +Y  +LE+G V      +   + F +  G     
Sbjct: 11  PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 69

Query: 207 -----TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                  +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +  
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  172 bits (439), Expect = 2e-51
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 19/148 (12%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW 
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWT 95

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS--------------- 140

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLED 185
             +K+G K    +++DE+L   E   ED
Sbjct: 141 --IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           + +  G G   P      +V   G+L+DGTVF    ++G     +   F+ +  +VI G 
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERG-----KPTTFRPN--EVIKGW 94

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
             A+  M++ +   L I  + A+G         ++PP S + ++VEL+S +   +     
Sbjct: 95  TEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRTAE 151

Query: 392 TEEKIEAAGKKKEQ 405
             ++I    ++  +
Sbjct: 152 EVDEILRKAEEDRE 165

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ + +  G     P   D+  V+Y  RL DG V      +     F            
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWT 95

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS------WKTV 263
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S       +T 
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 150

Query: 264 SEITDDKKVIKKILKE 279
            E+ +  +  ++  ++
Sbjct: 151 EEVDEILRKAEEDRED 166

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  165 bits (420), Expect = 3e-49
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 38  GLKKKLVKEGEGW-DTPENGDEVEVHYTGTL-LDGTQFDSS--RDRSTPFKFTLGQGNVI 93
            +K +++++        + GD + VHY G L  DG+ F S+   +   P  FTLG    +
Sbjct: 13  EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           KGWD G+K M  GE     IPP L YG+ G    IPP +TL F+++LL 
Sbjct: 73  KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 260 WKTVSEITDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQL 317
           ++++  +  + +V  ++L++     R    G ++ V   G L+ DG++F         Q 
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
             F     + + G D+ +  M   E   L I P   +G     +    +PP ST+ + ++
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGK----EGKGKIPPESTLIFNID 117

Query: 378 LVSFEK 383
           L+    
Sbjct: 118 LLEIRN 123

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 143 WTSVKDICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLE-DGMV----VGKADG-- 194
           + S+  +  +  +  ++L++        K  D +LV+YE  LE DG +        +G  
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA 254
           + FT+          + +K M  GEK  L + P  G+G++GK      G +PP +TL   
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK------GKIPPESTLIFN 115

Query: 255 LELVSWKTV 263
           ++L+  +  
Sbjct: 116 IDLLEIRNG 124

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  171 bits (436), Expect = 2e-48
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
                  F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E   
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257

Query: 434 SFGDEEKKQA-KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492
           +  ++      + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW 317

Query: 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545
             + + D A  D+KKA EI P+++ ++ E   +K+K+K    KE   Y  MFA
Sbjct: 318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score =  141 bits (358), Expect = 4e-39
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F + Q  VI GW 
Sbjct: 107 GLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWT 163

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      +P  LAYG       I PN TL F + L+S
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           K++  G+G  +P +   V V+  G+L DGTVF    K G     +   F+    QVI G 
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTG-----KPATFQVS--QVIPGW 162

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 211

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVK 213
           K++  G     P   D V V Y  RL DG V            F V      P   +A++
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQ 167

Query: 214 TMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            M  G    + V     +G +        G + PN TL   + L+S
Sbjct: 168 LMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLIS 208

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  137 bits (348), Expect = 1e-38
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 12/141 (8%)

Query: 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV 448
                    +  + +++GN LFK G Y  A   Y +A   +  D +  D         + 
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQD---------QA 65

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
             + N AAC LKL+DY +AE   +K ++ D  +VKALYRR+QA  ++  LD A  D+++ 
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

Query: 509 LEIDPDNRDVKLEYKTLKEKM 529
           + ++P N+  +   + +    
Sbjct: 126 VSLEPKNKVFQEALRNISGPS 146

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score =  137 bits (346), Expect = 2e-37
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 178

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL 
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 67.5 bits (165), Expect = 5e-13
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++++ G G E P +   V V   G L DG  F     +G     +   F+ D   VI G 
Sbjct: 126 QVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRG-----EPLSFRLD--GVIPGW 177

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
              +  +KK     L I PE A+G A        +PPNST+ ++VEL+  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ ++++ G+  E PKD D V+VNY+  L DG        + + + F +      P   
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + +K +KKG K+ L + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 224

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score =  136 bits (344), Expect = 4e-37
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G+    +  G G   P+    VEV Y G L DG  FD S     P  F L    VI GW 
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      IP + AYG  G+   I P   L F++EL++
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
             L  G G  +P+    V+V+ +G+L DG +F +       Q   F+ D   VI G   A
Sbjct: 122 TELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQST-----QPQWFRLD--SVISGWTSA 173

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  M       L I  + A+G+   +    ++ P + + +E+EL++  +
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGA---EGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAV 212
           GI+   L  G     P     V V Y  RL DG +  ++     F +           A+
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRL--DSVISGWTSAL 174

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + M  G K  L +     +G +G         + P   L   +EL++
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  113 bits (284), Expect = 2e-29
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA  Y  A K Y +A   IE +          A        
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQA---IELN-------PSNAIYYG---- 51

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
            N +   L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++
Sbjct: 52  -NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

Query: 512 DPDNRDVKLEYKTLKEKMKEYNKKEAK 538
            P ++D K++Y+   + +K+   + A 
Sbjct: 111 KPHDKDAKMKYQECNKIVKQKAFERAI 137

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  109 bits (274), Expect = 2e-28
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           + +EE    A + K +GN   K   +  A   Y KA   IE + +        A      
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKA---IELNPAN-------AVYF--- 49

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
              N AA   KL +Y  A + C + + +D    KA  R   A   +     A    KKAL
Sbjct: 50  --CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 510 EIDPDNRDVKLEYKTLKEKMKE 531
           E+DPDN   K   K  + K++E
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  105 bits (264), Expect = 4e-27
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
                 ++    + A   K +GN  F+ G Y +A K Y +A   I+ +        K AK
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEA---IKRN-------PKDAK 51

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                   N AAC  KL +++ A K C + + L+   +K   R+A A   M D   A   
Sbjct: 52  LYS-----NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 106

Query: 505 IKKALEIDPDNRDVKLEYKTLKEKMK 530
            +KAL++D   ++    Y+       
Sbjct: 107 YQKALDLDSSCKEAADGYQRCMMAQY 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  105 bits (264), Expect = 4e-27
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
             K  +A + KEQGN LF   KY  A+  Y +A+        +                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YT 47

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N A C LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  + 
Sbjct: 48  NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 513 PDNRDVKLEY---KTLKEKMKEYNKKEAK 538
            + R    +         K K +N  E +
Sbjct: 108 KEQRLNFGDDIPSALRIAKKKRWNSIEER 136

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  103 bits (259), Expect = 1e-26
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +E   + KE+GN     G    A + Y +A   I+ D                    N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEA---IKLD-------PHNHVLYS-----NRS 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           A   K  DY++A +   K +DL     K   R+A A   +   + A+   ++ L+ + +N
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 516 RDVKLEYKTLKEK 528
             +K   + ++ +
Sbjct: 106 PQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  103 bits (259), Expect = 2e-26
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E A ++K +GN  FK G Y  A + Y +A   ++ D        + A         N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEA---VKRD-------PENAILYS-----NRAA 55

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           C  KL ++++A   C   + LDS+ +K   R+A   + M +   A+   + AL++DP N 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 517 DVKLEYKTLK 526
           + +   +   
Sbjct: 116 EAREGVRNCL 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  100 bits (251), Expect = 2e-25
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A + + +G   F    +  A K Y +    I+          + A+        N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---IKRA-------PEDARGYS-----NRAAAL 48

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            KL  + +A   C K ++ D   V+A  R+A A I + +   A   +  A   D +  + 
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

Query: 519 --KLEYKTLKEKMKE 531
               E   L  K  +
Sbjct: 109 SSAREIDQLYYKASQ 123

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  101 bits (254), Expect = 2e-25
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 19/167 (11%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
            +      + K K +GN      +Y++A   Y +A   +                     
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQA---LSIAP-------------ANPI 46

Query: 451 NLNN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
            L+N AA       +++A +       +D +  KA  R   A   MAD   A+   +K +
Sbjct: 47  YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106

Query: 510 EIDPDNRD--VKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGG 554
           E + +     +K   +T K K++E N+       ++     +    G
Sbjct: 107 EAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAG 153

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 96.1 bits (239), Expect = 3e-22
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 15/141 (10%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+        +                 N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 518 VKLEYKTLKEKMKEYNKKEAK 538
              +      ++ +  +  + 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSI 128

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 97.3 bits (243), Expect = 3e-22
 Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S  +      ++      +  
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEY---TVRSK---ERI-- 278

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             C  K +   +A ++C++VL ++  NV AL  RA+AY+     D A  D + A E + +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 515 NRDVKLEYKTLKEKMKEYNKK 535
           ++ ++   +  +  +K+  K+
Sbjct: 339 DQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
            E G  L  AG+ A A  ++  A   ++ D            A         A   L + 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAA---VDGDPDN-------YIAY-----YRRATVFLAMG 51

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
             K A    TKV+ L      A  +R    ++   LD AE D KK L+ +P  ++ K   
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 523 KTLKE 527
             L +
Sbjct: 112 SQLVK 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           K +   + + Q    F    Y  A    +K    +E            A+          
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKI---LEVCVWD-------AELR-----ELR 160

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A C +K  + ++A         L S N +A Y+ +  Y Q+ D +L+  ++++ L++D D
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK 548
           ++     YK +K+  K               +  
Sbjct: 221 HKRCFAHYKQVKKLNKLIES------AEELIRDG 248

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+ L K GK   A   ++K +K    +    + E +  KA ++    + A       DY 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            A     K+L++   + +    RA+ +I+  +   A  D+K A ++  DN +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.4 bits (217), Expect = 9e-21
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + A K+KE GN  +K   +  A K Y+KA +    + ++                + N A
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------------ITNQA 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKA 508
           A   +  DY +  +LC K +++   N        KA  R   +Y +      A     K+
Sbjct: 46  AVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105

Query: 509 LEIDPDNRDVKLEYKTLKEKMKEYNK 534
           L       DV  + +  ++ +KE  +
Sbjct: 106 LAEHRTP-DVLKKCQQAEKILKEQER 130

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           ++ A + K Q N  FKA  Y  A K Y +A++    +  +                 N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
              L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++ P +
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 516 RDVKLEYKTLKEKMKE 531
           +D K++Y+   + +K+
Sbjct: 108 KDAKMKYQECNKIVKQ 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S             V      
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSI--------AEYTVRSKERI 301

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             C  K +   +A ++C++VL ++  NV AL  RA+AY+     D A  D + A E + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++ ++   +  +  +K+  K++   
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 6e-19
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
            + +    K  E G  L  AG+ A A  ++  A   ++ D                    
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDN-------------YIAY 63

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
              A   L +   K A    TKV+ L      A  +R    ++   LD AE D KK L+ 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 512 DPDNRDVKLEYKTLK--EKMKEYNKK 535
           +P   + K     L   ++M+    +
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQ 149

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 15/145 (10%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           K +   + + Q    F +G Y  A    +K    +E            A+          
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWD-------AELR-----ELR 183

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A C +K  + ++A         L + N +A Y+ +  Y Q+ D +L+  ++++ L++D D
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++     YK +K+  K     E   
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELI 268

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 24/112 (21%), Positives = 49/112 (43%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+ L K GK   A   ++K +K    +    + + +  K+ ++    + A       DY 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            A     K+L++   + +    RA+ +I+  +   A  D+K A ++  DN +
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 26/110 (23%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L     Y ++    EK                +  K L            L      
Sbjct: 10  GVDLGTENLYFQSMADVEKH--------------LELGKKL------------LAAGQLA 43

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A       +D D  N  A YRRA  ++ M     A  D+ K +++  D 
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 24/136 (17%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
           +    +AA  +K+ GN  +K   + +A   Y+KA++    + +F                
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------- 44

Query: 452 LNN-AACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEF 503
            NN AA   + K + +  + C K +++            KA+ R   A+ +  DL LA  
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

Query: 504 DIKKALEIDPDNRDVK 519
              ++L    D   VK
Sbjct: 105 WFHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496
           +     A A K   +L NAA   K KD+++A     K ++LD  N+     +A  Y +  
Sbjct: 2   NAMTDAAIAEK---DLGNAA--YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK 56

Query: 497 DLDLAEFDIKKALEIDPDNRDVKLEY 522
                    +KA+E+  + R      
Sbjct: 57  KFAECVQFCEKAVEVGRETRADYKLI 82

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85

Query: 114 PPELAYGE 121
            P+ A+G 
Sbjct: 86  EPDAAFGV 93

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
             + V V    KL DGT           +   F+  +  + +GL++ ++ +K  +    +
Sbjct: 27  SNSAVLVHFTLKLDDGTTAEST--RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84

Query: 348 IAPEYAFG 355
           + P+ AFG
Sbjct: 85  LEPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
             VLV++  +L+DG              F + D      L + +  +K G+K   +++P 
Sbjct: 29  SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88

Query: 229 YGFGE 233
             FG 
Sbjct: 89  AAFGV 93

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
           +L + EKE +  +       E A + + +G   F    +  A K Y +    I+      
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM---IKRAPED- 172

Query: 437 DEEKKQAKALKVACNLNN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495
                 A+        +N AA   KL  + +A   C K ++ D   V+A  R+A A I +
Sbjct: 173 ------ARGY------SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            +   A   +  A   D +         + +E  + Y K  
Sbjct: 221 KEYASALETLDAARTKDAEVN----NGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.4 bits (189), Expect = 8e-16
 Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 31/165 (18%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A K+K +GN  +KA ++  A + Y KA    E          K    L      N AA +
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKA---WELH--------KDITYL-----NNRAAAE 48

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---- 514
            +  +Y+ A       ++            ++++ ++ +      D+KK +E        
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 515 --NRDVKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMK 548
               D+  + +  ++++K+         ++A+     G  +    
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +  + G         +K    IEY      E                A    KL++ +
Sbjct: 79  SKSFARIGNAYHKLGDLKKT---IEYYQKSLTEH-------------RTADILTKLRNAE 122

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +  K       ++    +      + Y   +D   A     + ++  P++
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +    K+KEQGN+LFK G Y  A   Y++    I           +           N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQL---ITAQ-------PQNPVGYS-----NKA 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL-EIDPD 514
              +KL +Y QA ++C + L   S       R    Y ++     A   ++  + E+D  
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDEL 104

Query: 515 NRDVK 519
                
Sbjct: 105 PEGYD 109

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
            Q +  K      N+    K   Y++A     +++    +N      +A A I++ +   
Sbjct: 2   SQFEKQK---EQGNSL--FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQ 56

Query: 501 AEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKF 539
           A    ++ L              ++   +  +  +        + 
Sbjct: 57  AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M+ G+     IP E AYG 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN 83

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV+
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 337 TMKKNEVALLTIAPEYAFG 355
            M+  +   + I  E A+G
Sbjct: 64  DMEVGDEKTVKIPAEKAYG 82

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 16/194 (8%)

Query: 346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405
                E   G +   +        +   +      FE++ +  + + + K + A   +  
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F       A +  +KA++              +  +      +  A       D  
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIEL-----------FPRVNSY-----IYMALIMADRNDST 287

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +      K L LDS N    Y R Q    + + D A  D  KA E+DP+N    ++   L
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 526 KEKMKEYNKKEAKF 539
             +  +++  E  F
Sbjct: 348 AYRENKFDDCETLF 361

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK + A   K++GN  F+  KY  A K Y  A++            K+           N
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDPVFY-----SN 44

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK-ALEID 512
            +AC + + D K+  ++ TK L+L     K L RRA A   +     A FD+   +L  D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 513 PDNRDVKLEYKTLKEKMKEYNKKEA 537
            ++  ++   +    K      KE 
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEK 129

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L     + +A K+Y+ A   IE +          A  +              ++++ 
Sbjct: 379 AEILTDKNDFDKALKQYDLA---IELENKLDGIYVGIAPLVG---KATLLTRNPTVENFI 432

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL----- 520
           +A  L  K   LD R+ +A    AQ  +Q  D+D A    +++ ++     +        
Sbjct: 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492

Query: 521 EYKTLKEKMKEYNKKEAK 538
           E   ++++++       K
Sbjct: 493 EAAKVQQRIRSDPVLAKK 510

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F    Y +A K ++KA    E D        + A                +   + 
Sbjct: 311 GQMNFILQNYDQAGKDFDKA---KELDPENIFPYIQLACLAY------------RENKFD 355

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             E L ++         +     A+      D D A      A+E++   
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 22/173 (12%), Positives = 49/173 (28%), Gaps = 18/173 (10%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
              +  +          + F   K       Y+++    E D    +      K    + 
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDES---NEADKELMNGLSNLYKRSPESY 205

Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           +  + +     + +++      +   L  +   +L           D   A  DIKKA+E
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265

Query: 511 IDPD-----NR-DVKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMK 548
           + P          +  +     E    ++K        +  Y   G M   ++
Sbjct: 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 1/138 (0%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKY-IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
           ++ +   +AG+  +A   + + +   I+    +      +   +        A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           +Y +A     ++L     NV  L   A+  +       A    +K L+++ DN    +  
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 523 KTLKEKMKEYNKKEAKFY 540
                   E  KK+ +  
Sbjct: 129 GNYYYLTAEQEKKKLETD 146

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G+   A + YEK ++           E     A      L N    L  +  K
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQL----------EADNLAAN---IFLGNY-YYLTAEQEK 140

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +  +   K L   ++   A YR   + +     + A   ++K +   P   + +     +
Sbjct: 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199

Query: 526 KEKMKEYNK 534
               KE N+
Sbjct: 200 LRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 16/148 (10%)

Query: 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK 447
           W    +    ++    E      K   Y +A   Y++ ++                  L 
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----------APNNVDCL- 91

Query: 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI-K 506
                  A  ++     K A ++  K+L L++ N+ A       Y   A+ +  + +   
Sbjct: 92  ----EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNK 534
           K L      +  +      K     Y K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 16/99 (16%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR----------------AQAYIQM 495
           L   +  ++     QA     + + L+    +  Y                  A AY + 
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
            + D A    K+ L+  P+N D       ++    +   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 23/183 (12%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +        + K    ++  ++   A + K +GN  F A  +  A K Y+ A   IE D 
Sbjct: 3   HMNGEPDIAQLKG---LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA---IELDP 56

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +                  N +AC +   D ++  +  TK L++   + KAL RRA A  
Sbjct: 57  NEPV------------FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104

Query: 494 QMADLDLAEFDIKKALEIDPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFAKMKS 549
            + +   A FD+   L ++ D         LE    K+ MK  N+  +K  G     + S
Sbjct: 105 SLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163

Query: 550 RAQ 552
              
Sbjct: 164 NTS 166

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 30/218 (13%), Positives = 59/218 (27%), Gaps = 22/218 (10%)

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEA 398
              EV+ +  +  Y    A     L  +   +   Y V      K  + +          
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
              ++     L   G +         A        S          +      +  A   
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVL--LQESI--NLHPTPNSY-----IFLALTL 286

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD- 517
              ++ ++  K   K +DL+       Y R Q Y  + D   A+ D +KA  ++P+N   
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

Query: 518 ------VKLEYKTLKEKMKEYNK------KEAKFYGNM 543
                 +  +     E    +N+         +     
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
              L   G +  A K+Y+ A +     +           KA  +A   +    +L  + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK----- 519
             A KL TK  +LD R+ +A    AQ  +QM  +D A    + +  +     +       
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 520 LEYKTLKEKMKEYNKKEAKFYGNMFA 545
            E   ++++++      AK    +  
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
           G +        +             + +  A  LK     N        K++ +A K   
Sbjct: 1   GSHMNGEPDIAQLKGLSP------SQRQAYAVQLK-----NRGNHFFTAKNFNEAIKYYQ 49

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++LD          +  YI   DL+       KALEI PD+
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 15/113 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F    Y  A + ++KA      +                   +  A    K   + 
Sbjct: 317 GQMYFILQDYKNAKEDFQKA---QSLNPEN-------VYPY-----IQLACLLYKQGKFT 361

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           ++E    +         +     A+      D D A      A  ++     +
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 18/163 (11%), Positives = 39/163 (23%), Gaps = 12/163 (7%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E +            + F              +  Y        D  ++   A      +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
            N         Y       T    L      AL      +    +L  A+  +++++ + 
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 513 PDNR------DVKLEYKTLKEKMKEYNK------KEAKFYGNM 543
           P             + +  +E  K + K      +    Y + 
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 48  EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107
           +  D         + Y       +    S     P +F +G   +I G +  +   + GE
Sbjct: 2   QNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGE 61

Query: 108 NAVFTIPPELAYGE 121
                I PE AYG 
Sbjct: 62  WEEVVIAPEEAYGV 75

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
           +      ++   + Q  ++ +    +  ++  EF     Q+I GL++AV+  +  E   +
Sbjct: 8   SIKQAALIEYEVREQGSSIVLDS--NISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV 65

Query: 347 TIAPEYAFG 355
            IAPE A+G
Sbjct: 66  VIAPEEAYG 74

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G   ++AGK+  A K ++       YD  +                L   AC+  L  
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARY---------------FLGLGACRQSLGL 67

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y+QA +  +    +D    +  +  A+ ++Q+ DLD AE     A  +          ++
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP----AHE 123

Query: 524 TLKEKMKEY 532
            L  +    
Sbjct: 124 ALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532
            +  L    ++ LY       Q    D A+   +    +D  +    L     ++ +  Y
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 533 NK 534
            +
Sbjct: 69  EQ 70

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + YT  + +G   D          +  G  N+I G +  ++  ++GE     +
Sbjct: 4   GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57

Query: 114 PPELAYGE 121
           P E AYG 
Sbjct: 58  PAEKAYGP 65

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                 +  G+   A   +     Y  Y+  +                +  AA     + 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------IMGLAAIYQIKEQ 85

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           ++QA  L      L   +   ++   Q  +++     A+   +  ++   D   +K++ +
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-KLKIKAQ 144

Query: 524 TLKEKMK 530
           +  + ++
Sbjct: 145 SYLDAIQ 151

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.6 bits (173), Expect = 6e-13
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E G   F       A   ++ A   +         EK  A         N      KLK 
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEKPWAATW-----ANLGHAYRKLKM 531

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           Y  A     + L L + +       A  Y+      LA   + ++L I P+ 
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 15/134 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G       K + A + + K+      D  FG            A     A       ++ 
Sbjct: 380 GIYYLCVNKISEARRYFSKS---STMDPQFGP-----------AWI-GFAHSFAIEGEHD 424

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           QA    T    L              ++Q+ ++ LA   ++ +  +   +  +  E   +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

Query: 526 KEKMKEYNKKEAKF 539
                +       F
Sbjct: 485 AFNKSDMQTAINHF 498

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 22/152 (14%)

Query: 405 QGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG-------DEEKKQAKALK------ 447
           +G        + RA + Y++A+       E             DEE      L       
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 448 -----VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                +         K   +D  +  +     ++   ++   L  +A      +      
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
               K LEIDP N DV   +     +  E NK
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 18/118 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----- 460
           G    + G    A++  + +    +YD             L     L   A         
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD----------PLLL---NELGVVAFNKSDMQTA 494

Query: 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           +  ++ A  L  K    +            AY ++   D A   + + L +  ++ +V
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           + +TLF   ++        K ++   Y+               +     + A   +  + 
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYN---------------LDVYPLHLASLHESGEK 355

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +   +   ++D               Y+ +  +  A     K+  +DP  
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +L ++G+  +        V          D   ++A        +      L +    
Sbjct: 346 LASLHESGEKNKLYLISNDLV----------DRHPEKAVTW---LAV--GIYYLCVNKIS 390

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +  +K   +D +   A    A ++    + D A      A  +    
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R ++ Y  ++  +          +K +  L     L  A        
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGL----------EKSSDLL-----LCKADTLFVRSR 320

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +     + TK+L++D  N+        +  +  + +         ++  P+ 
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 32/126 (25%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G YARA     K   Y                    AC    A C +KL D++
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRS----------------SACRYLAAFCLVKLYDWQ 167

Query: 466 QAEKLC------------TKVLDLDSRNVK----ALYRRAQAYIQMADLDLAEFDIKKAL 509
            A  L                L +    +K      Y R Q Y  +++ D A+   K+AL
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227

Query: 510 EIDPDN 515
            +D   
Sbjct: 228 MVDAKC 233

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA-CKLKLKDY 464
           G  L++  +Y  A +R  +A +   Y           ++         N     L++K  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPER--------SRVF------ENLGLVSLQMKKP 157

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            QA++   K L L+          A    +  +   A        +    N    L    
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMK 548
           L +  +  ++  A  YG    ++ 
Sbjct: 218 LAKVFE--DRDTAASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 436 GDEEKKQAKALK-----VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490
              ++   K  K         +      L+  + +QA+    K L++D  +  A    A 
Sbjct: 20  HMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAV 79

Query: 491 AYIQMADLDLAEFDIKKALEIDPDNRDV 518
            +    +  LA+ + +KAL  D  N  V
Sbjct: 80  VFQTEMEPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 55/172 (31%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G    + G   +A     KA   +E D S        A A          A   +   + 
Sbjct: 44  GLGYLQRGNTEQAKVPLRKA---LEIDPSS-------ADAH------AALAVVFQTEMEP 87

Query: 465 KQAEKLCTKVLDLDSRNVKALY-----------------------------RRAQAY--- 492
           K A++   K L  DSRN + L                               R++ +   
Sbjct: 88  KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147

Query: 493 ----IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
               +QM     A+   +K+L ++ +   V LE   L  K +EY    A+ Y
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY--VPARQY 197

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           ++ +  L  +     ++   K          A  +    Y+Q  + + A+  ++KALEID
Sbjct: 8   HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67

Query: 513 PDN 515
           P +
Sbjct: 68  PSS 70

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E G   F+ G++  A K +  A   +E   + G+E            N N      KLK 
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDA---LEKIKAIGNEVTVDKWEP--LLN-NLGHVCRKLKK 251

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y +A     + L L  +N          +  M + + A      AL +  D+        
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS---VT 308

Query: 524 TLKEKMKEYNK-KEA 537
            L   ++ Y    EA
Sbjct: 309 MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 16/129 (12%)

Query: 415 YARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470
           Y     + E A +Y       + ++G            A             ++ QA   
Sbjct: 100 YLMVGHKNEHARRYLSKATTLEKTYGP-----------AWI-AYGHSFAVESEHDQAMAA 147

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530
                 L       +      Y    +  LAE    +AL I P++  V  E   +  +  
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207

Query: 531 EYNKKEAKF 539
           E+   E  F
Sbjct: 208 EWKTAEKWF 216

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                +    +    K     ++          ++   A  L       +    ++L   
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVME----------KDPFHASCLP-----VHIGTLVELNKA 72

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDN 515
            +   L  K++DL   N  + +     Y+ +    + A   + KA  ++   
Sbjct: 73  NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           ++ A       D+K   KL + V++ D  +   L       +++   +   +   K +++
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 512 DPDN 515
            P N
Sbjct: 86  YPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 15/113 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
            G++     ++ +A   Y  A    +               +     L          + 
Sbjct: 131 YGHSFAVESEHDQAMAAYFTA---AQLMKGC-------HLPM-----LYIGLEYGLTNNS 175

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           K AE+  ++ L +   +   ++       Q  +   AE     ALE      +
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 26/70 (37%)

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           K +E +  + +D    N+  +   A+ +    D  +        +E DP +      +  
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 525 LKEKMKEYNK 534
              ++ + N+
Sbjct: 65  TLVELNKANE 74

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L K G+ + A ++Y+ A   ++ DT+                     +      ++ 
Sbjct: 81  GKILMKKGQDSLAIQQYQAA---VDRDTTR-------LDMYG-----QIGSYFYNKGNFP 125

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A +   K +   + + K  Y   QAY    +   A+    K LE+ P+ 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 20/159 (12%), Positives = 38/159 (23%), Gaps = 29/159 (18%)

Query: 405 QGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG---DEEKKQAKALKVACNLNNAA- 456
             + LFK   YA A + + K                    E  K   A K      +   
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 457 --------------CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                           +K      A +     +D D+  +    +    +    +  LA 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 503 FDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNK 534
             ++K +     +              K   +    + K
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 22/137 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G   +   +Y +A   + K    +E                        A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKV---LELK-------PNIYIGY---LWRARANAAQDPDTKQ 195

Query: 465 KQAEKLCTKVLDLDSRN--------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
             A+    K++++ +          ++A    A  Y    D   A+   K  L +DP N+
Sbjct: 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

Query: 517 DVKLEYKTLKEKMKEYN 533
                 K   E    ++
Sbjct: 256 KAIDGLKMKLEHHHHHH 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L        ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVLL-----LLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++    T  +  +    +A       Y +   L  A    + AL + PD 
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N L + G  A A   Y  A   +    +        A +L    NL  A  K +  + +
Sbjct: 278 ANALKEKGSVAEAEDCYNTA---LRLCPTH-------ADSL---NNL--ANIKREQGNIE 322

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           +A +L  K L++      A    A    Q   L  A    K+A+ I P   D
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 5e-11
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G+   A   +EKA   +  D +F         A     NL N     + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKA---VTLDPNF-------LDAY---INLGNV--LKEARIFD 220

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A     + L L   +       A  Y +   +DLA    ++A+E+ P  
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
               ++ G    A   Y +A   IE    F         A    CNL NA    +     
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA---IELQPHF-------PDAY---CNLANA--LKEKGSVA 288

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +AE      L L   +  +L   A    +  +++ A    +KALE+ P+ 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L  AG    A + Y  A   ++Y+                  +L N      L   +
Sbjct: 108 AAALVAAGDMEGAVQAYVSA---LQYNPDL-------YCVR---SDLGNL--LKALGRLE 152

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A+    K ++       A       +    ++ LA    +KA+ +DP+ 
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 5e-10
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN   + G+   A + Y  A   +     F D               N AA  +   D +
Sbjct: 74  GNVYKERGQLQEAIEHYRHA---LRLKPDFID-----------GYI-NLAAALVAAGDME 118

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A +     L  +                +  L+ A+    KA+E  P+ 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN L +A  + RA   Y +A   +    +        A       NL  A    +     
Sbjct: 210 GNVLKEARIFDRAVAAYLRA---LSLSPNH-------AVVH---GNL--ACVYYEQGLID 254

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A     + ++L      A    A A  +   +  AE     AL + P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +  A  + +  D++ AE+ C ++   +  N   L   +  + Q   LD +      A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 512 DPDN 515
           +P  
Sbjct: 63  NPLL 66

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 9/113 (7%), Positives = 27/113 (23%), Gaps = 15/113 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            +     G         ++    +              +A+           +   + + 
Sbjct: 30  ADAELGMGDTTAGEMAVQRG---LALHPGH-------PEAV-----ARLGRVRWTQQRHA 74

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           +A  L  +  D    +         A       + A     +A ++ P+   +
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471
                R   +   AV++            +   A      L  A  +L + D    E   
Sbjct: 2   TADGPRELLQLRAAVRH----------RPQDFVAW-----LMLADAELGMGDTTAGEMAV 46

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            + L L   + +A+ R  +          A   +++A +  P++  +
Sbjct: 47  QRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      ++   K  L+  +
Sbjct: 385 GGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SHDGGKQALETVQ 429

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   +  +   L  + V A+         +  +         AL    ++  V L     
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGG 489

Query: 526 KEKMKEYNK 534
           +  +    K
Sbjct: 490 RPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 12/136 (8%), Positives = 35/136 (25%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +A               +Q  A+      +N   K  L+  +
Sbjct: 351 DGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SNGGGKQALETVQ 395

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NR-DV 518
           +   +  +   L    V A+         +  +      + +A  + P       +    
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

Query: 519 KLEYKTLKEKMKEYNK 534
           +   +++  ++   + 
Sbjct: 456 RPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 14/136 (10%), Positives = 38/136 (27%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      ++   K  L+  +
Sbjct: 317 GGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SHDGGKQALETVQ 361

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVK 519
           +   +  +   L    V A+         +  +      + +A  + P+      + D  
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 520 LEY-KTLKEKMKEYNK 534
            +  +T++  +    +
Sbjct: 422 KQALETVQRLLPVLCQ 437

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      +N+  K  L+  +
Sbjct: 249 GGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAI-----ASNSGGKQALETVQ 293

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVK 519
           +   +  +   L  + V A+         +  +      + +A  + P       + D  
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353

Query: 520 LEY-KTLKEKMKEYNK 534
            +  +T++  +    +
Sbjct: 354 KQALETVQRLLPVLCQ 369

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 22/138 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A               +Q  A+      +N   K  L+ 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SNGGGKQALET 257

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L  + V A+   +     +  +      + +A  + P          
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 518 -VKLEYKTLKEKMKEYNK 534
             K   +T++  +    +
Sbjct: 318 GGKQALETVQRLLPVLCQ 335

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 22/138 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                               +A               +Q  A+      +N   K  L+ 
Sbjct: 145 SHDGGKQALETVQALLPVLCQA---HGLTP-------EQVVAIA-----SNGGGKQALET 189

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L  + V A+         +  +      + +A  + P          
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 518 -VKLEYKTLKEKMKEYNK 534
             K   +T++  +    +
Sbjct: 250 GGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 22/137 (16%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A               +Q  A+      +N   K  L+  
Sbjct: 282 NSGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAI-----ASNGGGKQALETV 326

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRD- 517
           ++   +  +   L  + V A+         +  +      + +A  + P+      +   
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGG 386

Query: 518 VKLEYKTLKEKMKEYNK 534
            K   +T++  +    +
Sbjct: 387 GKQALETVQRLLPVLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R      +A               +Q  A+      ++   K  L+ 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SHDGGKQALET 121

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + P+ 
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 13/131 (9%), Positives = 38/131 (29%), Gaps = 21/131 (16%)

Query: 413 GKYARASKRYEKAV--KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470
                A   +  A+    +           +Q  A+      ++   K  L+  ++   +
Sbjct: 47  VTAVEAVHAWRNALTGAPLNLTP-------EQVVAI-----ASHDGGKQALETVQRLLPV 94

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYK 523
             +   L  + V A+         +  +      + +A  + P+           K   +
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154

Query: 524 TLKEKMKEYNK 534
           T++  +    +
Sbjct: 155 TVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 9/91 (9%), Positives = 24/91 (26%), Gaps = 2/91 (2%)

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
                       +  ++ A  L    L+L    V A+         +  +      + +A
Sbjct: 41  IAKRGGVTAVEAVHAWRNA--LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98

Query: 509 LEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
             + P        +   K+ ++   +     
Sbjct: 99  HGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 23/137 (16%)

Query: 406 GNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA-CKLKLKD 463
           G  L  +  + A +   ++KA+    Y T           A        N   C  K   
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTP--------YIAN------LNKGICSAKQGQ 128

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
           +  AE    + L    +   A    A+  +    L  A++  KK        +       
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188

Query: 518 VKLEYKTLKEKMKEYNK 534
            K+    L      Y  
Sbjct: 189 WKIAKA-LGNAQAAYEY 204

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 32/174 (18%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EEK 440
           E+  + +  K +      +   Y +A+   E A   ++ D                 +  
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDA---LKSDPKNELAWLVRAEIYQYLKVN 58

Query: 441 KQA-----KALKVA-------CNLNNAACKLKLKDYKQAEKLCTKVL--DLDSRNVKALY 486
            +A     +AL +         N     C  +L    ++     K L          A  
Sbjct: 59  DKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANL 117

Query: 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
            +     +     LAE  +K++L   P       E    K    +    +A +Y
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL--GDADYY 169

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N L    +  RA   Y+KA   +E D+S              A         +  + YK
Sbjct: 64  ANLLSSVNELERALAFYDKA---LELDSSAAT-----------AYY-GAGNVYVVKEMYK 108

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A+ +  K L     N    Y      +++    LA   +++A+E++ ++
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 15/127 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L K  +   A    ++A   +E + +  +           A       C        
Sbjct: 132 GTVLVKLEQPKLALPYLQRA---VELNENDTE-----------ARF-QFGMCLANEGMLD 176

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A      V + D  +  A Y     Y    + + A   + KA++I PD+       K L
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236

Query: 526 KEKMKEY 532
                 +
Sbjct: 237 GHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 22/137 (16%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q     + G Y +A++ + KA   IE +          A        +N A     + + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKA---IEENKED-------AIPY-----INFANLLSSVNEL 73

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------- 517
           ++A     K L+LDS    A Y     Y+       A+   +KAL    +N D       
Sbjct: 74  ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133

Query: 518 VKLEYKTLKEKMKEYNK 534
           V ++ +  K  +    +
Sbjct: 134 VLVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 15/102 (14%)

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLKDYKQAEKLCTK 473
             +   +  +   +              +   +A            +  DY++A +  TK
Sbjct: 2   GSSHHHHHHSSGLVP-------------RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTK 48

Query: 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++ +  +       A     + +L+ A     KALE+D   
Sbjct: 49  AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 28/158 (17%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEY-------DTSFGDEEKKQA------KALKV 448
           G  L+  G+   A        +               +    +++ K+       K+ K 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 449 ACNLNNAACKL----KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
               N     L    +    ++ +   T    L     +  +   + Y+ + DLD A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 505 IKKALEIDPDN-------RDVKLEYKTLKEKMKEYNKK 535
            K A+  +  N                 ++ + E +++
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 24/185 (12%)

Query: 356 SAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKY 415
           ++  + E+  VP   T+  EV L   E+   S  +  +E+ +   ++   G      G  
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYER---GVLYDSLGLR 59

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475
           A A   + +A   +              +       L       +  ++  A +    VL
Sbjct: 60  ALARNDFSQA---LAIRPDM-------PEVF---NYLGIY--LTQAGNFDAAYEAFDSVL 104

Query: 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVKLEYKTLKEKM 529
           +LD     A   R  A        LA+ D+    + DP+         +  +    K+  
Sbjct: 105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 164

Query: 530 KEYNK 534
           +   +
Sbjct: 165 EVLKQ 169

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 15/135 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                 +++G Y  A   ++        D                   L   AC+  +  
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQAL---CVLDHYDSR------------FFLGLGACRQAMGQ 70

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y  A    +    +D    +  +  A+  +Q  +L  AE  +  A E+  +  +      
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

Query: 524 TLKEKMKEYNKKEAK 538
            +   ++    K+  
Sbjct: 131 RVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 12/85 (14%), Positives = 23/85 (27%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A  + +   Y+ A  +   +  LD  + +           M   DLA         +D  
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
                        +  E  + E+  
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGL 112

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 10/72 (13%), Positives = 23/72 (31%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
                      + ++ S  ++ LY  A    Q    + A    +    +D  +    L  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 523 KTLKEKMKEYNK 534
              ++ M +Y+ 
Sbjct: 62  GACRQAMGQYDL 73

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 57.6 bits (138), Expect = 4e-10
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           M   +++  A            AG+Y  A+    +A   +E   +   EE          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----------VKALYRRAQAYIQMADL 498
           C+   A     L+ + +A     K L   +R            + A+Y RA A   +   
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118

Query: 499 DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
             A  + KK +E+  + +      + + E   +
Sbjct: 119 AEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +A                Q  A+      +N   K  L+  +
Sbjct: 233 DGGKQALETMQRLLPVLCQA---HGLPP-------DQVVAIA-----SNIGGKQALETVQ 277

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R      +A                Q  A+      +N   K  L+ 
Sbjct: 638 SHDGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASNGGGKQALET 682

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A                Q  A+      ++   K  L+ 
Sbjct: 299 SHGGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASHDGGKQALET 343

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 7e-08
 Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      ++   K  L+  
Sbjct: 198 NNGGKQALETVQRLLPVLCQA---HGLTP-------AQVVAIA-----SHDGGKQALETM 242

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 7e-08
 Identities = 10/111 (9%), Positives = 26/111 (23%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      ++   K  L+  
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGL----------TPAQVVAI-----ASHDGGKQALETV 649

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  +  + 
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 11/112 (9%), Positives = 25/112 (22%), Gaps = 16/112 (14%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A                Q  A+       +   K  L+ 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI------ASNGGKQALET 410

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +   + P  
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A                Q  A+      +N   K  L+  +
Sbjct: 572 GGGKQALETVQRLLPVLCQA---HGLTQ-------VQVVAI-----ASNIGGKQALETVQ 616

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 30/190 (15%)

Query: 335 VITMKKNEVALLTIAPEY-----AFGSAESQQELAVVPPNSTVHYEVELVSFEKE--KES 387
           ++ + ++  AL T+A  Y     A   A  +  + V    S       L++   E     
Sbjct: 91  IVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPP 150

Query: 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAV--KYIEYDTSFGDEEKKQAKA 445
             ++T + ++ A +                A      A+    +            Q  A
Sbjct: 151 LQLDTGQLVKIAKRGG---------VTAMEAVHASRNALTGAPLNLTP-------AQVVA 194

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
           +      +N   K  L+  ++   +  +   L    V A+         +  +      +
Sbjct: 195 I-----ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 506 KKALEIDPDN 515
            +A  + PD 
Sbjct: 250 CQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A                Q  A+      +N   K  L+  +
Sbjct: 538 GGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASNGGGKQALETVQ 582

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   +  +   L    V A+         +  +      + +A  + P        +   
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642

Query: 526 KEKMKEYNK 534
           K+ ++   +
Sbjct: 643 KQALETVQR 651

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 12/112 (10%), Positives = 26/112 (23%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      +      +A                Q  A+      +N   K  L   +
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGL----------TPDQVVAIA-----SNIGGKQALATVQ 514

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           +   +  +   L    V A+         +  +      + +A  + PD   
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      +N   K  L+  
Sbjct: 503 NIGGKQALATVQRLLPVLCQA---HGLTP-------DQVVAIA-----SNGGGKQALETV 547

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  +    
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +                 Q  A+      ++   K  L+  +
Sbjct: 436 DGGKQALETVQRLLPVLCQT---HGLTP-------AQVVAI-----ASHDGGKQALETVQ 480

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           Q   +  +   L    V A+         +A +      + +A  + PD 
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK---VACNLN 453
           +  G    Q   +       +A +  ++ +               QA  L    V    +
Sbjct: 794 QDHGLTLAQVVAIASNIGGKQALETVQRLL-----------PVLCQAHGLTQDQVVAIAS 842

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           N   K  L+  ++   +  +   L    V A+         +  +      + +   +  
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902

Query: 514 DNRDVKLEYKTLKEKMKEYNKKEAKF 539
           D   V +     K+ ++   +     
Sbjct: 903 DQ-VVAIASNGGKQALETVQRLLPVL 927

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 17/178 (9%), Positives = 51/178 (28%), Gaps = 21/178 (11%)

Query: 386  ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
            E+         +  G   +Q   +       +A +  ++ +               Q   
Sbjct: 851  ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLL-----------PVLCQDHG 899

Query: 446  LKVACN--LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503
            L +     + +   K  L+  ++   +  +   L    V A+   +     +  +     
Sbjct: 900  LTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLP 959

Query: 504  DIKKALEIDPD------NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGR 555
             + +   + P+      +   K   +++  ++   +   A    +    +     GGR
Sbjct: 960  VLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVALACL--GGR 1015

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G +  KAG+Y++A    E+     + D                  +L  A   +K     
Sbjct: 15  GISHAKAGRYSQAVMLLEQV---YDADAFD-------VDVA---LHLGIA--YVKTGAVD 59

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +  +L  + L     NVK        Y+Q+   DLA   + K  E +P N
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G    K G   R ++  E++   +              K       L      ++++ Y 
Sbjct: 49  GIAYVKTGAVDRGTELLERS---LADAPDN-------VKVA---TVLGLT--YVQVQKYD 93

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------V 518
            A  L  KV + +  N    +R   A   +   D A    K AL + P+           
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153

Query: 519 KLEYKTLKEKMKEYNK 534
             +    +E +  + K
Sbjct: 154 YEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 24/110 (21%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G T  +  KY  A     K     E +                   L  A     L  + 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKV---AEANPIN-------FNVR---FRLGVA--LDNLGRFD 127

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A       L L     K     A +Y QM   + A    KKA E+D   
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           +      K   Y QA  L  +V D D+ +V        AY++   +D     ++++L   
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

Query: 513 PDN 515
           PDN
Sbjct: 73  PDN 75

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQ----------AKALKV--- 448
            N   + G    A + Y KA++    +    ++     ++Q           +A+++   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 449 -ACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
            A   +N    LK ++D + A +  T+ + ++     A    A  +    ++  A    +
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
            AL++ PD  D         + + ++   + + 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 25/171 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAK---ALK-----VACN-- 451
            + L + GK   A   Y++A++    + +  ++ G+  K+      AL+     +  N  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 452 ----LNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
                +N A   K   +  +A       L L      A    A     + D    +  +K
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

Query: 507 KALEIDPDNRDVKLEYKTLKEKMK------EYNKKEAKFYGNMFAKMKSRA 551
           K + I  D  +                    + K  A+ +GN+     +  
Sbjct: 170 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVL 220

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 452 LNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           LNN A   +   + ++A +L  K L++      A    A    Q   L  A    K+A+ 
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 511 IDPDN 515
           I P  
Sbjct: 72  ISPTF 76

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G ++ K    A A+  +E   +          +E ++ +A +   +L     + + + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQ----------KEPEREEAWR---SL--GLTQAENEK 66

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              A         LD +++      A ++    + + A   ++  L   P    +
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 21/67 (31%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +      LKL +  +A      V   +    +A         +     LA   +  A  +
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 512 DPDNRDV 518
           DP +  V
Sbjct: 81  DPKDIAV 87

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.5 bits (130), Expect = 7e-09
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D          A+A     NL NA    K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKA---LELDPRS-------AEAW---YNLGNA--YYKQGDYD 52

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP +
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D          A+A     NL NA    K  DY 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKA---LELDPRS-------AEAW---YNLGNA--YYKQGDYD 86

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP +
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 379 VSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYAR-----ASKRYEKAVKYIEYDT 433
           + FE+ K + + + +   +   + +E      +A  +        S  Y+K  ++     
Sbjct: 1   MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQF----- 55

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
                 +++               +L+  D   A  L    +  D ++++A         
Sbjct: 56  ------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109

Query: 494 QMADLDLAEFDIKKALEIDPDNRDV 518
           +     LA   +++ LE+ PDN+  
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 18/145 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G    + G    A   +E AV+          ++ K  +A      L     + +   
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQ----------QDPKHMEAW---QYLGTTQAENE--Q 113

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
              A     + L+L   N  AL   A ++   +    A   ++  L   P    +     
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL---VT 170

Query: 524 TLKEKMKEYNKKEAKFYGNMFAKMK 548
             +E         +K          
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDS 195

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G     +G+Y +A   +  A   +    +                 L      L      
Sbjct: 224 GVLFNLSGEYDKAVDCFTAA---LSVRPND-------YLLW---NKLGAT---LANGNQS 267

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           ++A     + L+L    +++ Y    + I +     A     +AL +   +R  + E   
Sbjct: 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327

Query: 525 LKEKMKEYNKKEA 537
           + E +     + A
Sbjct: 328 MSENI-WSTLRLA 339

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +        +A +     ++Y           ++ A    +  +       L    + 
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 466 QAEKLCTKVLDLDSRNVKA--LYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           + ++L    + LD  ++           +    + D A      AL + P++
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 15/117 (12%)

Query: 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
           G  K    +L     +    + +  A   +  D +  D                      
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAA---VRLDPTSID-----------PDVQCGLGVLF 227

Query: 460 K-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
               +Y +A    T  L +   +     +           + A    ++ALE+ P  
Sbjct: 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 16/145 (11%), Positives = 41/145 (28%), Gaps = 18/145 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G ++ K    A A+  +E      +      +           A   +    + + + 
Sbjct: 26  EEGLSMLKLANLAEAALAFEAV---CQAAPEREE-----------AWR-SLGLTQAENEK 70

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
              A         LD +++      A ++    + + A   ++  L   P    +     
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL---GS 127

Query: 524 TLKEKMKEYNKKEAKFYGNMFAKMK 548
              +   + +    +     FA   
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPN 152

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 12/110 (10%), Positives = 33/110 (30%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +         A       +         G    +    +      +         +Y+
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   L    L+++  + +        Y    + D A  ++++A+E+ PD+
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           G     +  Y  A+    +A   +E            A+        N   A        
Sbjct: 179 GVLYNLSNNYDSAAANLRRA---VELRPDD-------AQLW------NKLGATLANGNRP 222

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           ++A     + LD++   V+ +Y  A +Y  M+  DLA   + +A+ +         E   
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282

Query: 525 LKEKMKEYNKKEA 537
              +      +  
Sbjct: 283 EATRSMWDFFRML 295

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +      LKL +  +A      V        +A         +     LA   +  A  +
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 512 DPDNRDV 518
           DP +  V
Sbjct: 85  DPKDIAV 91

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D +        A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPNN-------AEAW---YNLGNA--YYKQGDYD 60

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD  N +A Y    AY +  D D A    +KALE+DP+N
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALE 510
           L      +   D + A +   + L  +     +A Y    AY ++ D   A  + + A+E
Sbjct: 4   LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNK 534
           ++PD+  ++   K + + +  YNK
Sbjct: 64  LNPDSPALQ-ARKMVMDILNFYNK 86

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 14/145 (9%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +E    + E + E WD    E  E A   +    +  +  +        EK   +     
Sbjct: 5   FERAKAAVESDTEFWDKMQAEWEEMA---RRNWISENQEAQNQVTVSASEKGYYFHT--- 58

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
                   +               +LK  D           +  D  + +A         
Sbjct: 59  --------ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA 110

Query: 494 QMADLDLAEFDIKKALEIDPDNRDV 518
           +  +   A   +++ LE+ P+N   
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 22/141 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G    K G         E A   I  D          A+A +    L     + +  +
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAA---ILQDPGD-------AEAWQ---FLGITQAENE--N 114

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRD 517
            + A     + L+L   N+KAL   A +Y   +    A   +K  ++ +P       N+ 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 518 VKL-EYKTLKEKMKEYNKKEA 537
                 + + +   + +  E 
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEG 195

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 15/132 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G     +G++ RA   +  A   +                     N    A        +
Sbjct: 220 GVLFHLSGEFNRAIDAFNAA---LTVRPEDYS-----------LWN-RLGATLANGDRSE 264

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +  T+ L++    +++ Y    + I +     A  +   AL +   +R+ +      
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

Query: 526 KEKMKEYNKKEA 537
                    + A
Sbjct: 325 ISGNIWAALRIA 336

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 14/98 (14%), Positives = 37/98 (37%)

Query: 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477
            +  +E+A   +E DT F D+ + + + +     ++             +EK      + 
Sbjct: 1   GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60

Query: 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++    +      ++  DL +    ++ A+  DP +
Sbjct: 61  PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G        +  A   +       +            ++        N       LK+ 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPH----------SRIC-----FNIGCMYTILKNM 53

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            +AEK  T+ ++ D     A ++R   Y Q    DLA  D+K+AL     N+ +  +YK 
Sbjct: 54  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--DYKI 111

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMK 548
           L  + K +  +       M+AK +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKE 135

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 36/147 (24%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G           A K + ++   I  D          A A              + + Y 
Sbjct: 44  GCMYTILKNMTEAEKAFTRS---INRDKHL-------AVAY-----FQRGMLYYQTEKYD 88

Query: 466 QAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKAL 509
            A K   + L     N                 + LY  A  Y +  +   AE  +  A 
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            +  + R  K++     + M+   K++
Sbjct: 149 SMKSEPRHSKID-----KAMECVWKQK 170

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N        KD+K A    + V D  S   +  +     Y  + ++  AE    +++  D
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 513 PDN 515
              
Sbjct: 68  KHL 70

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G   + AG Y  +   +EKA   I+ D                            L+ Y
Sbjct: 12  EGVLQYDAGNYTESIDLFEKA---IQLDPEESK-----------YWL-MKGKALYNLERY 56

Query: 465 KQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++A      V+++  D  N      +A A   +   ++     +   +++  +
Sbjct: 57  EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
                +    +Y ++  L  K + LD    K    + +A   +   + A       + + 
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70

Query: 513 PDNRDV 518
            D  + 
Sbjct: 71  EDEYNK 76

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 29/178 (16%)

Query: 395 KIEAAGKKKEQGNTLFKAGK--YARASKRYEKAVK----YIEYDTSFG------DEEKKQ 442
           +IE+     E+G T  K G     RA   +EKA++      E+ +         D     
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 443 AKALK--------------VACNLNNA--ACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486
             A+               +   L       + + ++  + EKL  + L+        L 
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNM 543
             A+ Y +  + D A   +KKALE  P+N  +  +     + K+ +            
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 13/125 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACK 458
            +    A +Y  A   ++K                 +G+ +  Q K    A +      K
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400

Query: 459 LKLKDY------KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           +  K         + +K+    L  +  + +AL+  A        +  A+ D ++ LE  
Sbjct: 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460

Query: 513 PDNRD 517
                
Sbjct: 461 SLIPS 465

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 16/141 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G+   A +   KA + I+       E   QA+   +    N A     +    
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQ------QEHADQAEIRSLVTWGNYAWVYYHMGRLS 111

Query: 466 QAEKLCTKVLDL--------DSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDN 515
             +    KV  +           + +         ++      + A+   +KALE  P N
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 516 RDVKLEYKTLKEKMKEYNKKE 536
            +          ++  +   +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQ 192

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 34/189 (17%)

Query: 363 LAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRY 422
           L  +P N+ +H ++      K  +  ++           +               A    
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLR----------ENGMYGKRKLLELIGHAVAHL 323

Query: 423 EKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482
           +KA    E + +                    A+       Y++AE    K    +   V
Sbjct: 324 KKA---DEANDNLFR------------VCSILASLHALADQYEEAEYYFQKEFSKELTPV 368

Query: 483 KA-----LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD---VKLEYKTLKEKMKEYNK 534
                   Y   Q Y QM   D A     + ++I+  +R+   +K + + + +     N 
Sbjct: 369 AKQLLHLRYGNFQLY-QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG 427

Query: 535 KEAKFYGNM 543
            +++    +
Sbjct: 428 ADSEALHVL 436

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 17/168 (10%)

Query: 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKA 412
                + +   +V   N+T       + F  +     + T  + ++          L K 
Sbjct: 84  IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKL 143

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKL 470
            +   A K  +K     E  T                  L  A   L    +  + A  +
Sbjct: 144 DRLDLARKELKKMQDQDEDAT---------------LTQLATAWVSLAAGGEKLQDAYYI 188

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
             ++ D  S  +  L  +A  ++     + AE  +++AL+ D  + + 
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.0 bits (111), Expect = 7e-06
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 14/157 (8%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
            +Y  +  R +  V  ++       E  +          L  A+     ++   A +   
Sbjct: 72  AEYLASHSRRDAIVAELD------REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532
           +   L+      +    Q  +++  LDLA  ++KK  + D D    +L    +       
Sbjct: 126 QGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180

Query: 533 NKKEAKFYGNMFAKMKS---RAQGGRAHERRQQGMTE 566
             ++A +     A   S       G+A     QG  E
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 86/627 (13%), Positives = 169/627 (26%), Gaps = 183/627 (29%)

Query: 4   DFDIPAANEMD---------------ADMDLPDDAPMMK-VGEEKEIGNQGLKKKLVKEG 47
           DF+     E                  + D  D   M K +  ++EI        ++   
Sbjct: 8   DFET---GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSK 58

Query: 48  EG--------W---DTPEN------GDEVEVHYT-----------GTLLDGTQFDSSRDR 79
           +         W      E        + + ++Y               +    +   RDR
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 80  --STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE---LAYGESGSPPTIPPNATL 134
             +    F   + NV +     ++   K   A+  + P    L  G  GS  T       
Sbjct: 119 LYNDNQVFA--KYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 135 QFDVELLS-------WTSVKDICKDGGIIKKILK-----------EGEKWENPK----DL 172
               ++         W ++K+      +++ + K             +   N K     +
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 173 DEVLVNY--EARLEDGMVVGKADGVE-------FTVKDGHFCPTLAKAVKTMKKG----- 218
              L         E+ ++V     V+       F +     C  L   + T  K      
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLS----CKIL---LTTRFKQVTDFL 281

Query: 219 ----EKVLLAVKPQYGFGEK------GKSASGNEGAVPPNAT----LQIAL--ELVS--- 259
                  +                   K        +P         ++++  E +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 260 --WKTVSEITDDK--KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE 315
             W     +  DK   +I+  L   +    P E               +VF    H    
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE----PAE-------YRKMFDRLSVFPPSAHIPTI 390

Query: 316 QL----FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNS 370
            L    F+    +   V++ L +  +  K+ + + ++I    +        EL V   N 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSI-----YLELKVKLENE 442

Query: 371 -TVHYE-VELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428
             +H   V+  +  K  +S D+                      G + +  +  E   + 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDL---------IPPYLDQYFYSHIGHHLKNIEHPE---RM 490

Query: 429 IEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTKVLDLDSRNVKA-- 484
             +   F D    + K ++      NA+  +   L+  K  +           R V A  
Sbjct: 491 TLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 485 --LYRRAQAYIQMADLDLAEFDIKKAL 509
             L +  +  I     DL    ++ AL
Sbjct: 550 DFLPKIEENLICSKYTDL----LRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 54/441 (12%), Positives = 111/441 (25%), Gaps = 169/441 (38%)

Query: 261 KTVSEITDD---KKVIKKILKEGDGFER-----------PNEGAVVKVK---------LI 297
           K V ++      K+ I  I+   D                 E     V+         L+
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 298 GKLQ----------------------DGTVFVKKGHSEEEQ-------LFEFKTDEEQVI 328
             ++                      D  VF K   S  +        L E +  +  +I
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 329 DGL--------------DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHY 374
           DG+                 V      ++  L         +  S + + +      ++ 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------LKNCNSPETV-LEMLQKLLY- 207

Query: 375 EVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA---------------- 418
             ++      +     N + +I +    + +   L K+  Y                   
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 419 -------------------SKRYEKAVKYIEYDTSFGDEEKKQ--AKALKV--------A 449
                              S      +    +  +   +E K    K L           
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 450 CNLNNAACKL---KLKD-------YKQ--AEKLCTKVLD-----LDSRNVKALYRRAQAY 492
              N     +    ++D       +K    +KL T +++     L+    + ++      
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFD----- 376

Query: 493 IQMADLDLAEF--DIK---KALEI---DPDNRDV-----KLEYKTLKEKMKEYNKKEAKF 539
                  L+ F          L +   D    DV     KL   +L EK     K+    
Sbjct: 377 ------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTIS 427

Query: 540 YGNMFAKMKSRAQGGRAHERR 560
             +++ ++K + +   A  R 
Sbjct: 428 IPSIYLELKVKLENEYALHRS 448

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N   + G   +    +E+ +K +        E     +   V    N+A        Y+
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQL--------EALHDNEEFDVKVRYNHAKALYLDSRYE 213

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--------DLDLAEFDIKKALEIDPDNRD 517
           ++     K +++ S  + ++    Q Y Q          +    E   KKA     D  +
Sbjct: 214 ESLYQVNKAIEI-SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF-DILE 271

Query: 518 VKLEYKTLKEKMKEYNKKE 536
           +    + L  K+       
Sbjct: 272 MHAYKEALVNKISRLEHHH 290

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 21/163 (12%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKV 448
           E K+     + E+    FK  +     K+   ++ Y     E          +  +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC--- 186

Query: 449 ACNLNN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLA 501
               +  A   L LK Y+ A     K   +       + + + LY         +  + A
Sbjct: 187 ---HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEY----NKKEAKFY 540
               K+A+ +  ++  +    +      + +       +A  Y
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 23/165 (13%), Positives = 45/165 (27%), Gaps = 20/165 (12%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKVACNL 452
           E                      K+YE A+ +         +    +        +   L
Sbjct: 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL-------MGRTL 227

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDLD------SRNVKALYRRAQAYIQMADLDLAEFDI 505
            N   CK     Y+ A     + + +           +A +   Q + ++  +D A    
Sbjct: 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 506 KKALEI--DPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK 548
            K +       +     E++ LK        +EA      F + K
Sbjct: 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---- 460
           +G       +Y  A K ++KA   + +      +  ++A+       ++ +   +K    
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIF----VKDRIEKAEFF---FKMSESYYYMKQTYF 161

Query: 461 -LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            +   +QA ++  +    + R ++     A  ++ +   + A    +KA  +    +  +
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221

Query: 520 LEYKTL------KEKMKEYNK 534
           L  +TL      K    +Y  
Sbjct: 222 LMGRTLYNIGLCKNSQSQYED 242

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 350 PEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKK----EQ 405
             ++ G       +A +     +     +   E+E +      +  ++     +    E 
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFET 67

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            +      K     +  EK ++ +       +E    A+    A  L   A  +      
Sbjct: 68  HSVEDAGRKQQDVQEEMEKTLQQM-------EEVLGSAQVEAQALMLKGKALNVTPDYSP 120

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           +AE L +K + L+   V+A  +  + Y +  D+  A      AL    +
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 31/206 (15%), Positives = 55/206 (26%), Gaps = 45/206 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVK--------------YIEYDTSFGDEEKKQA-------- 443
           G   +K G    A   +  A+                 +  T  GDE  +          
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 444 KALKVA-------CNLNNA------ACKLKLKDYKQAEKLCTKVLDLDSR---NVKALYR 487
            A+++          L NA            K  +QA     +   +D +   N      
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKKEAKFY 540
           RA  +        A     +A  +DP   +       +      L   ++   K + K  
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKL 323

Query: 541 GNMFAKMKSRAQGGRAHERRQQGMTE 566
            +M   ++    G     R Q    +
Sbjct: 324 QSMLGSLRPAHLGPCGDGRYQSASGQ 349

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVK--YIEYDTSF--GDEEKKQAKALKVACN 451
           +    +         +  +     ++ +  V   Y   D+ F     E    K   V   
Sbjct: 24  MTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ-- 81

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL-AEFDIKKALE 510
                     ++ ++  +   +VL       +AL  + +A     D    AE  + KA++
Sbjct: 82  ----------EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++P+  +   +   +  K  +       F
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
             T  K G    A +  +  V     Y+       +       A            +   
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE-------AYVALYR-QAEDRERGK 97

Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
              +QA  +      ++ R      +R   Y  + + D AE  +K+AL ++  
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 26/121 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L+  G+Y  A   +E+A   ++ +           +AL     L     +LKL    
Sbjct: 12  GVQLYALGRYDAALTLFERA---LKENPQD-------PEAL---YWLART--QLKLGLVN 56

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPD 514
            A +    ++    R +      ++AY+ +             L+ A   +K A  ++P 
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116

Query: 515 N 515
            
Sbjct: 117 Y 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           L        L  Y  A  L  + L  + ++ +ALY  A+  +++  ++ A  + K  +  
Sbjct: 9   LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 512 DPDN 515
            P  
Sbjct: 69  TPRY 72

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G        Y+ +   Y +A++    +          A  L    + +            
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAEL---YAALATVLYYQASQH---------MTA 98

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           Q   +  K L LDS  + AL   A      A+   A    +K ++++    +
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 3/63 (4%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL---AEFDIKKALEIDPDN 515
           L   DY  +     + L L   N +     A      A   +       I KAL +D + 
Sbjct: 55  LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114

Query: 516 RDV 518
              
Sbjct: 115 ITA 117

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 6/64 (9%), Positives = 24/64 (37%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              ++ +   +     +  + +N +      + Y+   D   +    ++AL++  +N ++
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 519 KLEY 522
               
Sbjct: 81  YAAL 84

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + +G    +   L + G   R +  ++ A +   +              L  + N    A
Sbjct: 57  QKSGDHTAEHRALHQVGMVERMAGNWDAARRC--FLEERELLASLPEDPLAASANAYEVA 114

Query: 456 ACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKAL 509
              L   D   A +   K L       D   +  A         Q  +L  A+    +A 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

Query: 510 EI 511
           +I
Sbjct: 175 DI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G       ++  A   ++      +     GD    + +AL     +          ++ 
Sbjct: 33  GYVYAFMDRFDEARASFQAL---QQQAQKSGDHTA-EHRAL---HQVGMVERMAG--NWD 83

Query: 466 QAEKLCTKVLDL------DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            A +   +  +L      D        Y  A   +   DL  A  + +K+L  
Sbjct: 84  AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 18/139 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                    Y +A    E A   +E      ++         +A +L N A    +  D 
Sbjct: 189 AGNYDDFKHYDKALPHLEAA---LELAMDIQNDRF-------IAISLLNIANSYDRSGDD 238

Query: 465 KQAEKLCTKVLDL-----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNRD 517
           + A +   K   +          K L+  +    +      A   I++ L+      ++ 
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298

Query: 518 VKLEYKTLKEKMKEYNKKE 536
            K  +  L+   KE   + 
Sbjct: 299 YKELFLFLQAVYKETVDER 317

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E+++       E+    FK  +     K+   ++ +     +    +     +++   +L
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH--ILQALDIYQNHPLYSIRTIQSL 185

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDI 505
              A      K Y +A       L+L     + R +  +L   A +Y +  D  +A    
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEY----NKKEAKFY 540
           +KA ++  +     L  K L             ++A  +
Sbjct: 246 QKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQF 283

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 20/137 (14%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
             Y    K Y       E   +    +KK    LK          +   K+Y +A     
Sbjct: 66  LDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125

Query: 473 KVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526
           +          D    +  ++ A+AY  M    ++ + I +AL+I               
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------Y 171

Query: 527 EKMKEYNKKEAKFYGNM 543
           +    Y+ +  +    +
Sbjct: 172 QNHPLYSIRTIQSLFVI 188

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 22/143 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G   F   +Y  A   Y +A K + +      ++ ++A+          A     +K  
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFV----SDDIEKAEFHF-----KVAEAYYHMKQT 157

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-------DLDLAEFDIKKALEIDPDNRD 517
             +     + LD+   +     R  Q+   +A         D A   ++ ALE+  D ++
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217

Query: 518 VKLEYKTL------KEKMKEYNK 534
            +    +L       ++  +   
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQM 240

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           LK  +  +A  L  ++++ D   V   Y   + Y ++   D A     + +E+  +    
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 519 KLEYKTLKEKMKEYNKKEA 537
               K L E      K E 
Sbjct: 78  ----KDLSELQDAKLKAEG 92

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 12/150 (8%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
              G        L +AGK         KAV    Y  +    E ++            + 
Sbjct: 107 VENGTPDTAAMALDRAGKLME-PLDLSKAVHL--YQQAAAVFENEERLRQAAELIGKASR 163

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALE 510
             ++ + + +A     K   +           K    +    +  AD   A+  ++++  
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 511 ID--PDNRDVKLEYKTLKEKMKEYNKKEAK 538
           I     + D     + L +   E ++++  
Sbjct: 224 IPGFSGSEDCAA-LEDLLQAYDEQDEEQLL 252

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
                         +AG   +  +R  +AV+YIE  +    E      A   A  L+ A 
Sbjct: 67  ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA---AMALDRAG 123

Query: 457 CKLKLKDYKQAEKLCTKVLDL-----DSRNVKALYRR-AQAYIQMADLDLAEFDIKKALE 510
             ++  D  +A  L  +   +       R    L  + ++  ++    D A   ++K   
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183

Query: 511 IDPDNRDVKLEYKTL 525
           +  +  +    YK  
Sbjct: 184 MYKEMENYPTCYKKC 198

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
              E   + ++    + KA +     +++++A   ++ + S   E +      K      
Sbjct: 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ- 201

Query: 454 NAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQMADLDLAE 502
               +L   DY  A+K   +   +     S +  AL    QAY +  D +   
Sbjct: 202 -VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ-DEEQLL 252

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 32/145 (22%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L  AG        ++ A++         ++ +  +        L NA     L DY
Sbjct: 54  EGERLCNAGDCRAGVAFFQAAIQA------GTEDLRTLSAIY---SQLGNAY--FYLGDY 102

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            +A +     L L     D     K+          M   D A    ++ L +       
Sbjct: 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL------- 155

Query: 519 KLEYKTLKEKMKEYNKKEAKFYGNM 543
               + L ++       E +   N+
Sbjct: 156 ---ARQLGDR-----LSEGRALYNL 172

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GNT +  G +  A + +++    +     FGD    + +A     NL N+   + L  ++
Sbjct: 230 GNTYYLLGDFQAAIEHHQER---LRIAREFGD-RAAERRAN---SNLGNSH--IFLGQFE 280

Query: 466 QAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            A +   + L L     +     ++ Y     Y  + + + A     + L I
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GN+    G++  A++ Y++    +      G+ E         A +  +       L ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKRT---LALAVELGEREV-------EAQSCYSLGNTYTLLHEF 319

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
             A +   + L +     D     +A +    A+  +   + A    ++ L++
Sbjct: 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 1/83 (1%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
                + + +  A       LD D     A     +      D   A    +  L     
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 515 NRDVKLEYKTLKEKMKEYNKKEA 537
             D ++  K L+  ++   +++A
Sbjct: 86  RGDQQV-VKELQVFLRRLAREDA 107

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             +L   + N+   +   + Y +    D A   ++ AL+ DP 
Sbjct: 9   EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L K+G        +E AV+         ++ K  +        L        L DY
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIY---SQL--GNAYFYLHDY 63

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            +A +     L L     D     KA          + + D A    ++ L+I
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 30/132 (22%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK--------- 447
           +  G K  +       G        +E A +Y +             K L          
Sbjct: 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK-------------KTLLLARQLKDRA 264

Query: 448 -VACNLNN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLD 499
             A +  +       L+DY++A     K L +     D     +A +    AY  + + D
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324

Query: 500 LAEFDIKKALEI 511
            A    +K LEI
Sbjct: 325 QAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GNT +  G +  A   +E+ +   +    FGD +  + +A     NL NA     L +++
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAK---EFGD-KAAERRAY---SNLGNAYI--FLGEFE 244

Query: 466 QAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            A +   K L L     D     ++ Y     Y  + D + A     K L I  +  D  
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304

Query: 520 LEYKTLK------EKMKEYNK 534
            E +           +  +++
Sbjct: 305 GEGRACWSLGNAYTALGNHDQ 325

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            L+D  Q  +    +L+ D++N  A   R     +    D     + + L+ D  N
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 13/111 (11%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
           G  A+A   YEKA+         G + K  A+       L   +    L +Y++AE +  
Sbjct: 4   GLEAQAVPYYEKAIAS-------GLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLA 51

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
             +     +       A     +   +     + K +    D+  ++  YK
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ-SYK 101

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 12/73 (16%), Positives = 24/73 (32%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           L   +  L+  ++ QA  +   + D           +A   ++    +LA+  +      
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 512 DPDNRDVKLEYKT 524
             DN    L  K 
Sbjct: 70  YQDNSYKSLIAKL 82

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L K+G        +E AV+         ++ K  +        L NA     L DY
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIY---SQLGNAYF--YLHDY 59

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            +A +     L L     D     KA          + + D A    ++ L+I
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GNT +  G +  A   +E+ +   +    FGD+              +N     + L ++
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAK---EFGDKA-------AERRAYSNLGNAYIFLGEF 239

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           + A +   K L L     D     ++ Y     Y  + D + A     K L I  + +D 
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299

Query: 519 KLEYKTLK------EKMKEYNK 534
             E +           +  +++
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQ 321

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GN     G++  AS+ Y+K    +       D           A +  +       L+DY
Sbjct: 230 GNAYIFLGEFETASEYYKKT---LLLARQLKDRAV-------EAQSCYSLGNTYTLLQDY 279

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           ++A     K L +     D     +A +    AY  + + D A    +K LEI
Sbjct: 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + AG + E GNT  +A K  ++      AV  +E          +  +    A       
Sbjct: 68  KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG---ANFKFELG 124

Query: 457 --CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
              +  L DY +A        +      +++    + +I+ ADL   +    +A +I   
Sbjct: 125 EILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183

Query: 515 NRDVKLEYKTLKEKMKEY 532
                +  +  +  +K+Y
Sbjct: 184 LIKSSMGNRLSQWSLKDY 201

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           NL NA    K  DY +A +   K L+LD  N +A Y    AY +  D D A    +KALE
Sbjct: 14  NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 511 IDPDN 515
           +DP+N
Sbjct: 72  LDPNN 76

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 356 SAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKY 415
               Q+ L  + P+          +F +  +      ++ +  A +   +         Y
Sbjct: 179 PQRMQETLQKILPHRGALLT----NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA--------------CNLNNAACKLKL 461
           ARA    EKA+  I   +    +EK+ A                         A   L  
Sbjct: 235 ARA----EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290

Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL- 520
               ++ +     +DL+  +        + Y        A      A  + P    +   
Sbjct: 291 GKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349

Query: 521 -------EYKTLKEKMKEYNKKE 536
                      +   + ++   E
Sbjct: 350 ENGIFQTSVPYVVPYLDKFLASE 372

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                   KY  A+     A+   E   + G +         VA  LNN A    K   Y
Sbjct: 76  ALVYRDQNKYKDAANLLNDALAIRE--KTLGKDH------PAVAATLNNLAVLYGKRGKY 127

Query: 465 KQAEKLCTKVLDLDSRNV---------KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           K+AE LC + L++    V         K L   A         +  E+  ++ALEI
Sbjct: 128 KEAEPLCKRALEI-REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL-KLKDY 464
            +   K GKY  A   Y++ +    ++  FG                 +A  +       
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRA-HEKEFGSVN------GDNKPIWMHAEEREESKDKR 228

Query: 465 KQAEK-----LCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           + +          K   +DS  V   L      Y +   L+ A      A   
Sbjct: 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                   KY  A+     A+   E   + G +         VA  LNN A    K   Y
Sbjct: 50  ALVYRDQNKYKEAAHLLNDALAIRE--KTLGKDH------PAVAATLNNLAVLYGKRGKY 101

Query: 465 KQAEKLCTKVLDLDSRNV---------KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           K+AE LC + L++    V         K L   A         +  E+  ++ALEI
Sbjct: 102 KEAEPLCKRALEI-REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	567
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.93
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.91
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.9
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.9
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.89
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.89
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.89
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.89
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.88
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.87
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.87
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.86
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.84
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.84
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.82
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.82
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.82
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.81
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.78
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.78
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.78
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.78
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.77
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.76
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.76
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.76
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.75
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.75
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.75
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.75
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.75
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.74
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.74
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.73
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.73
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.72
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.72
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.71
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.7
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.69
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.68
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.64
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.64
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.56
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.56
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.46
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.4
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.39
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.39
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.37
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.36
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.36
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.34
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.32
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.32
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.31
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.31
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.3
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.27
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.26
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.24
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.17
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.16
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.16
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.15
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.1
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.1
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.06
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.03
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.03
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.03
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.02
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.02
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.01
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.99
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.99
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.99
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.98
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.98
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.98
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.97
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.93
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.92
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.91
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.89
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.89
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.88
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.87
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.87
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.85
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.83
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.82
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.82
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.8
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.78
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.78
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.77
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.76
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.74
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.72
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.71
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.61
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.59
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.52
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.52
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.49
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.46
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.44
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.44
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.3
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.28
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.23
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.22
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.17
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.17
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.16
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.14
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.04
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	98.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.95
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.95
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.94
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.91
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.78
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.76
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.75
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.73
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.59
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.42
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.26
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.15
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.11
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.08
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.72
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.58
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.53
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.5
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.99
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	95.67
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	95.65
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.98
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.82
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.8
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.44
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.85
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.67
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.61
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.83
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	90.81
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.95
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	89.9
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.56
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	87.14
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.89
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.68
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	83.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	82.82
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	82.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	81.02
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	81.0
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.09

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=5.6e-66  Score=527.21  Aligned_cols=355  Identities=81%  Similarity=1.270  Sum_probs=222.7

Q ss_pred             cCCceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccc
Q 008400           27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG  106 (567)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~G  106 (567)
                      +++++..++++|++|+++++|+|+..|..||.|.+||++++.||++|++++.+++|+.|.+|.+++|+||+++|.+|++|
T Consensus         1 ~~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~G   80 (356)
T 3jxv_A            1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKG   80 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence            46778889999999999999999778999999999999999999999999987789999999999999999999999999


Q ss_pred             cEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCC
Q 008400          107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG  186 (567)
Q Consensus       107 e~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g  186 (567)
                      ++++|+|||++|||+.+.++.||++++++|+|+|++|.++.++..++.+.++++.+|.|+.+|..++.|++||+++++||
T Consensus        81 e~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dg  160 (356)
T 3jxv_A           81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDG  160 (356)
T ss_dssp             -------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS
T ss_pred             CEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCC
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeeccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeee
Q 008400          187 MVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI  266 (567)
Q Consensus       187 ~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~  266 (567)
                      ++|+++.++.|.+|.+++++||+++|.+|+.||++++.|||+++||+.|.+.......|||+++|+|+|+|++|..+.++
T Consensus       161 t~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv  240 (356)
T 3jxv_A          161 TVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI  240 (356)
T ss_dssp             CEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEE
T ss_pred             CEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEeccccc
Confidence            99999999999999999999999999999999999999999999999998766666789999999999999999999999


Q ss_pred             ecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEE
Q 008400          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (567)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v  346 (567)
                      +.|++++++++++|.|..+|..++.|+|||.+++.||++|+++.. .+.+|+.|.+|.+++|+||+.+|..|++||++.|
T Consensus       241 ~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v  319 (356)
T 3jxv_A          241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV  319 (356)
T ss_dssp             STTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred             ccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence            999999999999999988999999999999999999999998754 4578999999999999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEEEeee
Q 008400          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (567)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (567)
                      .|+|.++||+.+... ...||++++++|+|+|+++.+
T Consensus       320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            999999999887533 256899999999999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=2.9e-56  Score=474.21  Aligned_cols=387  Identities=36%  Similarity=0.632  Sum_probs=334.8

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008400          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (567)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip  226 (567)
                      .++++.++++.+|+|...|..||.|+|||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            678899999999999777999999999999999999999986    6899999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEE
Q 008400          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF  306 (567)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~  306 (567)
                      |+++||..|.+     +.|||+++|+|+|+|++|.. .+++.|++++++++++|.|..+|..|+.|+|||++++ +|++|
T Consensus       109 ~~~~yg~~g~~-----~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f  181 (457)
T 1kt0_A          109 PEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMF  181 (457)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEE
T ss_pred             hHHhccccCCC-----CCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEE
Confidence            99999988874     57999999999999999976 4778999999999999999889999999999999999 89999


Q ss_pred             EeccCCCCcccEEEEcCccc---hhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeee
Q 008400          307 VKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (567)
Q Consensus       307 ~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (567)
                      +++       +++|.+|++.   ++++|+.++..|++||++.+.++|.++|+..+...  ..||+++.+.|.++|.++.+
T Consensus       182 ~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~  252 (457)
T 1kt0_A          182 DCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  252 (457)
T ss_dssp             EEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG--GTBCTTCCEEEEEEEEEEEC
T ss_pred             ecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc--cCCCCCCEEEEEhhhhhccc
Confidence            753       4899999874   89999999999999999999999999999988653  46899999999999999999


Q ss_pred             cccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccC
Q 008400          384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (567)
Q Consensus       384 ~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~  463 (567)
                      ....|.+..+++...+..++++|+.+++.|+|.+|+..|++|+.+.+.......+...+...+...+|+|+|.||+++++
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  332 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE  332 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999887666777788888999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008400          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (567)
Q Consensus       464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~  543 (567)
                      |++|+.+|++||+++|+++++|+++|.+|+.+++|++|+.+|++|++++|+|..++..+..+..++++.+++++++|++|
T Consensus       333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhhcccc
Q 008400          544 FAKMKSRAQG  553 (567)
Q Consensus       544 f~~~~~~~~~  553 (567)
                      |.++...++.
T Consensus       413 f~k~~~~d~~  422 (457)
T 1kt0_A          413 FKKFAEQDAK  422 (457)
T ss_dssp             ----------
T ss_pred             Hhhhhhcccc
Confidence            9998776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=2.7e-43  Score=374.35  Aligned_cols=375  Identities=31%  Similarity=0.488  Sum_probs=273.5

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      +++|+.|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.+|++|++++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            68899999999999954599999999999999889999999988778999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccc
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (567)
                      |+++||..+.++.||++++++|+|+|++|... ++..+++++++++..|.|+..|..|+.|+++|++++ +|++|++ .+
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~-~~  185 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDC-RD  185 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEE-EE
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEec-Cc
Confidence            99999999998899999999999999999875 566788999999999999999999999999999999 8888886 46


Q ss_pred             eEEEecCC---CCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeecCcc
Q 008400          195 VEFTVKDG---HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK  271 (567)
Q Consensus       195 ~~~~~g~~---~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~  271 (567)
                      +.|.+|.|   .++++|+.++..|+.|+++.|.++|.++|+..|.+    ...|||++.+.|.+.+.+|....+...   
T Consensus       186 ~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~----~~~ip~~~~l~y~~~l~~~~~A~~~~~---  258 (457)
T 1kt0_A          186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFEKAKESWE---  258 (457)
T ss_dssp             EEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG----GGTBCTTCCEEEEEEEEEEECCCCGGG---
T ss_pred             eEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc----ccCCCCCCEEEEEhhhhhcccCcchhh---
Confidence            89999976   48999999999999999999999999999988864    236899999999999988754222110   


Q ss_pred             eeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCcc-chhhHHHHHHhccCCCcEEEEEEcC
Q 008400          272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAP  350 (567)
Q Consensus       272 v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~  350 (567)
                         +.+.     ..|...       ..+..-|.             .-+..|+. .-+..++.++...           +
T Consensus       259 ---~~~~-----~~~~~a-------~~~~~~G~-------------~~~~~g~~~~A~~~y~~Al~~~-----------p  299 (457)
T 1kt0_A          259 ---MDTK-----EKLEQA-------AIVKEKGT-------------VYFKGGKYMQAVIQYGKIVSWL-----------E  299 (457)
T ss_dssp             ---SCHH-----HHHHHH-------HHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHH-----------T
T ss_pred             ---cCHH-----HHHHHH-------HHHHHHHH-------------HHHhCCCHHHHHHHHHHHHHHh-----------c
Confidence               0000     000000       00000000             00111221 1223344443211           1


Q ss_pred             CCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh
Q 008400          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (567)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~  430 (567)
                      .                 ...+         ..     ....+.....+..+.++|..+++.|+|++|+..|++|+.+.+
T Consensus       300 ~-----------------~~~~---------~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          300 M-----------------EYGL---------SE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             T-----------------CCSC---------CH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             c-----------------cccC---------Ch-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            0                 0000         00     000122334577889999999999999999999999999877


Q ss_pred             ccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008400          431 YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD  504 (567)
Q Consensus       431 ~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~  504 (567)
                      .+               ..+|+++|.||+++++|++|+.+|++|++++|++..++.+++.++..++++++|.+.
T Consensus       349 ~~---------------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          349 AN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             TC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53               345899999999999999999999999999999999999999999999999988754

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=7.6e-40  Score=320.80  Aligned_cols=223  Identities=44%  Similarity=0.762  Sum_probs=205.0

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||++||.+|++|++++|+||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            58899999999999955599999999999999989999999987678999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEeeccccc--cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~--~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (567)
                      |++|||..+.++.||++++++|+|+|+++... ++.  .++++.++++++|+|...+..||.|+++|++++ +|++|++ 
T Consensus       129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~-  205 (280)
T 1q1c_A          129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQ-  205 (280)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEE-
T ss_pred             cHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEec-
Confidence            99999999988899999999999999999864 444  778899999999999878999999999999998 8999887 


Q ss_pred             cceEEEecCCC---CcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccee
Q 008400          193 DGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS  264 (567)
Q Consensus       193 ~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  264 (567)
                      .++.|.+|.+.   +++||+++|.+|++||+++|.|||+++||+.+.+    ...|||+++|+|+|+|+++....
T Consensus       206 ~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~----~~~IP~~~~l~f~V~L~~i~~~~  276 (280)
T 1q1c_A          206 RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK  276 (280)
T ss_dssp             EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG----GGTBCTTCCEEEEEEEEEEECCC
T ss_pred             CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCc----cCccCCCCeEEEEEEEEEEeCCC
Confidence            68999999987   5999999999999999999999999999988753    13599999999999999987544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=2.1e-37  Score=315.78  Aligned_cols=282  Identities=38%  Similarity=0.697  Sum_probs=260.5

Q ss_pred             eeeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccc---hhhHHHHHHhccC
Q 008400          263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMK  339 (567)
Q Consensus       263 ~~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~  339 (567)
                      ..+++.|++++|+|+++|.|..+|..|+.|+|||.+++ +|++|+++       |++|.+|.+.   ++++|+.+|..|+
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~   89 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRME   89 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCC
Confidence            35677899999999999999878999999999999999 89999864       6999999986   4899999999999


Q ss_pred             CCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHH
Q 008400          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS  419 (567)
Q Consensus       340 ~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~  419 (567)
                      +||++.+.++|.++||..+...  ..||+++.+.|+++|.++.+....+.+..+.....+..+...|+.+++.|+|++|+
T Consensus        90 ~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~  167 (336)
T 1p5q_A           90 KGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQAL  167 (336)
T ss_dssp             TTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999988653  25899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 008400          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (567)
Q Consensus       420 ~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~  499 (567)
                      ..|++|+.+.+.......+.......+...+++|+|.||+++++|++|+.+|+++|+++|+++++|+++|.+|..+|+++
T Consensus       168 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  247 (336)
T 1p5q_A          168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE  247 (336)
T ss_dssp             HHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999887666677788888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhccccc
Q 008400          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGG  554 (567)
Q Consensus       500 ~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~  554 (567)
                      +|+.+|++|++++|++..+...+..+...+++..+++++.|++||+++...+...
T Consensus       248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  302 (336)
T 1p5q_A          248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKA  302 (336)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999999999999999999999999999999999987766543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=9e-38  Score=318.72  Aligned_cols=279  Identities=34%  Similarity=0.524  Sum_probs=211.9

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecC-CcEEEeccCCCCcccEEEEcCcc-chhhHHHHHHhccCCCcEEEE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~-g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v  346 (567)
                      +.++.++|+++|.|. .|..|+.|+|||.+++.+ |++|+++..  .+.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~  124 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence            568999999999995 899999999999999985 999998742  467999999999 899999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecc---cccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHH
Q 008400          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK---ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE  423 (567)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~---~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~  423 (567)
                      +|++.++||..+... ...||+++++.|.|+|..+....   ..|.++.++++..+..++..|+.+++.|+|.+|+..|.
T Consensus       125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~  203 (338)
T 2if4_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE  203 (338)
T ss_dssp             EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred             EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999987632 24699999999999999887643   46888999999999999999999999999999999999


Q ss_pred             HHHHhhhccC--CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 008400          424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA  501 (567)
Q Consensus       424 ~al~~~~~~~--~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A  501 (567)
                      +|+.+.+.+.  ............+...+|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|
T Consensus       204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A  283 (338)
T 2if4_A          204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA  283 (338)
T ss_dssp             HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999877543  11223334445566678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhcc
Q 008400          502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRA  551 (567)
Q Consensus       502 ~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~  551 (567)
                      +.+|++|++++|++..++..+..+..+.....+++++.|++||.......
T Consensus       284 ~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             HHHHHHTTC-----------------------------------------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            99999999999999999999999988888888888999999998765443

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=7.7e-37  Score=311.86  Aligned_cols=220  Identities=39%  Similarity=0.688  Sum_probs=205.9

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      .+.++.++++++|.|+..|..||.|.|||++++.||++|+++    .++.|.+|.+++++||++||.+|++||++.|+||
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~  200 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK  200 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence            568999999999999999999999999999999999999987    4799999999999999999999999999999999


Q ss_pred             CCcccCCCCCCC-----CCCCCCcEEEEEEEEEEeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEe
Q 008400          115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV  189 (567)
Q Consensus       115 ~~~ayg~~~~~~-----~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~  189 (567)
                      |+++||..|.++     .||++++|+|+|+|++|..+.++..+.++.++++++|.|+..|+.||.|++||++++.+|++|
T Consensus       201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f  280 (356)
T 3jxv_A          201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF  280 (356)
T ss_dssp             GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred             hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence            999999998764     699999999999999999989999999999999999999999999999999999999999999


Q ss_pred             eec-----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008400          190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (567)
Q Consensus       190 ~~~-----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (567)
                      +++     +|+.|.+|.+++++||+++|.+|++||+++|+|||+++||+.+...   ...|||+++|+|+|+|++|.
T Consensus       281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~~~Ip~~~~l~f~vel~~~~  354 (356)
T 3jxv_A          281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELVSFV  354 (356)
T ss_dssp             EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEES---SSEECTTCCEEEEEEEEEEE
T ss_pred             eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCC---CCcCCcCCeEEEEEEEEEEE
Confidence            865     6899999999999999999999999999999999999999876421   24689999999999999874

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=4e-36  Score=294.40  Aligned_cols=223  Identities=37%  Similarity=0.671  Sum_probs=202.4

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008400          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (567)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip  226 (567)
                      .++++.++++++|.|...|..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            678999999999999777999999999999999999999986    6899999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee--cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCc
Q 008400          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT  304 (567)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~  304 (567)
                      |+++||+.|.+     +.|||+++|+|+|+|++|.. .++.  .|+++.++++++|.|...|..|+.|+|||.+++ +|+
T Consensus       129 p~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~  201 (280)
T 1q1c_A          129 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK  201 (280)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE
T ss_pred             cHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCE
Confidence            99999988763     57999999999999999976 4667  799999999999999878999999999999998 899


Q ss_pred             EEEeccCCCCcccEEEEcCccc---hhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          305 VFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       305 ~~~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      +|++       .+++|.+|.+.   +|+||+.+|..|++||++.|.++++|+||..+...  ..||+++++.|+|+|+++
T Consensus       202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i  272 (280)
T 1q1c_A          202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF  272 (280)
T ss_dssp             EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEE
Confidence            9975       36999999998   49999999999999999999999999999876542  259999999999999999


Q ss_pred             eecccccC
Q 008400          382 EKEKESWD  389 (567)
Q Consensus       382 ~~~~~~~~  389 (567)
                      .+.++.|+
T Consensus       273 ~~~~~~W~  280 (280)
T 1q1c_A          273 EKAKESWE  280 (280)
T ss_dssp             ECCCC---
T ss_pred             eCCCCCCC
Confidence            98888874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.93  E-value=2.3e-26  Score=234.29  Aligned_cols=297  Identities=19%  Similarity=0.256  Sum_probs=176.6

Q ss_pred             CCCCcCccCCceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcC-CCEEeecCCCCCcEEEEccCC-cchHHHH
Q 008400           20 PDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGWD   97 (567)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~-g~~~~~t~~~~~p~~~~lG~~-~~i~gl~   97 (567)
                      .+++.++++.....+.++|+.|+++++|+| ..|..||.|.|||++++.+ |++|++++..+.|+.|.+|.+ ++|+||+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e  110 (338)
T 2if4_A           32 QEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLA  110 (338)
T ss_dssp             ---CCCCCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHH
T ss_pred             cccCCCCCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHH
Confidence            345555678777888999999999999999 7899999999999999985 999999987678999999999 8999999


Q ss_pred             HHhcccccccEEEEEecCCcccCCCCC--CCCCCCCCcEEEEEEEEEEeeccccccccceeeeeeeccccccCCCCCCeE
Q 008400           98 IGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEV  175 (567)
Q Consensus        98 ~~l~~m~~Ge~~~i~ip~~~ayg~~~~--~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g~~~~~~~d~V  175 (567)
                      ++|.+|++||+++|+|||+++||..+.  .+.||++++++|.|+|+++....+..                         
T Consensus       111 ~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~-------------------------  165 (338)
T 2if4_A          111 IGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK-------------------------  165 (338)
T ss_dssp             HHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCB-------------------------
T ss_pred             HHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcccc-------------------------
Confidence            999999999999999999999999987  36799999999999998775421100                         


Q ss_pred             EEEEEEEeCCCeEeeeccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEE
Q 008400          176 LVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIAL  255 (567)
Q Consensus       176 ~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v  255 (567)
                                                ..+...+++-+..               +                         
T Consensus       166 --------------------------~~~~~~~~~~~~~---------------a-------------------------  179 (338)
T 2if4_A          166 --------------------------ARSDMTVEERIGA---------------A-------------------------  179 (338)
T ss_dssp             --------------------------TTTBCCHHHHHHH---------------H-------------------------
T ss_pred             --------------------------ccccCCHHHHHHH---------------H-------------------------
Confidence                                      0000000000000               0                         


Q ss_pred             EeecccceeeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCcc-chhhHHHHH
Q 008400          256 ELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRA  334 (567)
Q Consensus       256 ~l~~~~~~~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~  334 (567)
                        ..+                                       ..-|...             +..|+. .-+..++.+
T Consensus       180 --~~~---------------------------------------~~~g~~~-------------~~~g~~~~A~~~y~~A  205 (338)
T 2if4_A          180 --DRR---------------------------------------KMDGNSL-------------FKEEKLEEAMQQYEMA  205 (338)
T ss_dssp             --HHH---------------------------------------HHHHHHT-------------CSSSCCHHHHHHHHHH
T ss_pred             --HHH---------------------------------------HHHHHHH-------------HhcCCHHHHHHHHHHH
Confidence              000                                       0000000             001111 123345555


Q ss_pred             HhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCc
Q 008400          335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGK  414 (567)
Q Consensus       335 l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~  414 (567)
                      +.......          .|...+..                              ......-....+.+.|..+++.|+
T Consensus       206 l~~~p~~~----------~~~~~~~~------------------------------~~~~~~l~~~~~~nla~~~~~~g~  245 (338)
T 2if4_A          206 IAYMGDDF----------MFQLYGKY------------------------------QDMALAVKNPCHLNIAACLIKLKR  245 (338)
T ss_dssp             HHHSCHHH----------HHTCCHHH------------------------------HHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred             HHHhccch----------hhhhcccH------------------------------HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            43221000          00000000                              000011122467899999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HH
Q 008400          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA-YI  493 (567)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a-~~  493 (567)
                      |++|+..|++|+.+.+.+.               .+|+++|.+|+.+++|++|+.+++++++++|++..++..++.+ ..
T Consensus       246 ~~~A~~~~~~al~~~p~~~---------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          246 YDEAIGHCNIVLTEEEKNP---------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             CHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            9999999999999876432               4589999999999999999999999999999999999999998 44


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          494 QMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       494 ~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      ..+.+++|...|++++...|++..
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788999999999999998854

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.91  E-value=5e-24  Score=180.19  Aligned_cols=111  Identities=51%  Similarity=0.889  Sum_probs=104.5

Q ss_pred             eecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i  111 (567)
                      .++++|++|+++++|+| .. ++.||.|.|||++++.||++|++++..+.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus         2 ~~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v   80 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL   80 (113)
T ss_dssp             EECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE
T ss_pred             CCCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence            35789999999999999 55 99999999999999989999999987668999999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      .|||++|||+.+.++.||++++++|+|+|++++
T Consensus        81 ~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           81 TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             EECHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            999999999999888899999999999999873

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=6.7e-24  Score=186.82  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.9

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      .++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||+++|.+|++|++++|+||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            58999999999999955899999999999999999999999988778999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      |++|||..+.++.|||+++|+|+|+|++|+.
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEecC
Confidence            9999999999889999999999999999863

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=7.8e-24  Score=180.87  Aligned_cols=109  Identities=46%  Similarity=0.832  Sum_probs=102.2

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCC-------CCcEEEEccCCcchHHHHHHhccccccc
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~-------~~p~~~~lG~~~~i~gl~~~l~~m~~Ge  107 (567)
                      .|+|++|+++++|+|...|+.||.|.|||++++.||++|++++..       +.|+.|.+|.+++|+||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            589999999999999657999999999999999999999999753       4899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCC-CCCCCCcEEEEEEEEEE
Q 008400          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW  143 (567)
Q Consensus       108 ~~~i~ip~~~ayg~~~~~~-~ip~~~~l~~~vel~~~  143 (567)
                      +++|+|||++|||+.+.++ .|||+++++|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999999865 79999999999999986

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=5.8e-24  Score=183.66  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.5

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      .++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||+++|.+|++|++++|.||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67899999999999955799999999999999999999999987678999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      |++|||..+.++.|||+++++|+|+|++++.
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence            9999999999889999999999999999864

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=7.6e-24  Score=184.46  Aligned_cols=112  Identities=55%  Similarity=0.988  Sum_probs=105.3

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++++.+++|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67999999999999955799999999999999889999999986568999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEeec
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~  146 (567)
                      |++|||+.+.++.||++++++|+|+|+++...
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence            99999999988899999999999999999864

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.90  E-value=2.1e-23  Score=180.73  Aligned_cols=111  Identities=52%  Similarity=0.868  Sum_probs=105.1

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEE
Q 008400           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i  111 (567)
                      ...+++|++|+++++|+| ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|
T Consensus        23 ~~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v  101 (133)
T 2y78_A           23 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  101 (133)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEE
Confidence            345889999999999999 8999999999999999989999999987678999999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      .|||++|||+.+.++.|||+++++|+|+|+++
T Consensus       102 ~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          102 TIPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            99999999999988889999999999999874

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=2.7e-23  Score=189.53  Aligned_cols=129  Identities=29%  Similarity=0.558  Sum_probs=115.2

Q ss_pred             CCCCCcCccCCceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEccCC-cchHHH
Q 008400           19 LPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKGW   96 (567)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~-~g~~~~~t~~~~~p~~~~lG~~-~~i~gl   96 (567)
                      +++..++++......++++|++|+++++|+| ..|..||.|.|||++++. +|++|++++.++.|+.|.+|.+ ++|+||
T Consensus        31 ~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~  109 (180)
T 2f4e_A           31 SQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGL  109 (180)
T ss_dssp             ---CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHH
T ss_pred             CCcccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHH
Confidence            4445555677777788999999999999999 799999999999999998 6999999988778999999999 999999


Q ss_pred             HHHhcccccccEEEEEecCCcccCCCCC--CCCCCCCCcEEEEEEEEEEeeccc
Q 008400           97 DIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD  148 (567)
Q Consensus        97 ~~~l~~m~~Ge~~~i~ip~~~ayg~~~~--~~~ip~~~~l~~~vel~~~~~~~~  148 (567)
                      +++|.+|++|++++|+|||++|||..+.  ++.||++++++|+|+|+++..+..
T Consensus       110 eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e  163 (180)
T 2f4e_A          110 AIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE  163 (180)
T ss_dssp             HHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred             HHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence            9999999999999999999999999986  468999999999999999987543

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=1.9e-23  Score=174.95  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=100.4

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCc
Q 008400           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (567)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~  117 (567)
                      |++|+++++|+|...++.||.|.+||++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|++++|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            78999999999943499999999999999999999999986568999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |||+.+.++.||++++++|+|+|++++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            999999888899999999999999873

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.90  E-value=1.7e-23  Score=180.75  Aligned_cols=113  Identities=54%  Similarity=0.963  Sum_probs=104.7

Q ss_pred             eeeecCCCeEEE--EEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccE
Q 008400           31 EKEIGNQGLKKK--LVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN  108 (567)
Q Consensus        31 ~~~~~~~g~~~~--~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~  108 (567)
                      ....+++|++|+  ++++|+|...|+.||.|.|||++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|++
T Consensus        16 ~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~   95 (130)
T 2lgo_A           16 TQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEK   95 (130)
T ss_dssp             SCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEE
T ss_pred             cceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence            345588999999  999999943399999999999999889999999988778999999999999999999999999999


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          109 AVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       109 ~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      ++|.|||++|||+.+.++.|||+++++|+|+|+++
T Consensus        96 ~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           96 ALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EEEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999999988889999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.90  E-value=6.9e-24  Score=184.49  Aligned_cols=125  Identities=35%  Similarity=0.630  Sum_probs=103.6

Q ss_pred             CCCCCcCccCCceee--ecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEccCCcchHH
Q 008400           19 LPDDAPMMKVGEEKE--IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKG   95 (567)
Q Consensus        19 ~~~~~~~~~~~~~~~--~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~-~g~~~~~t~~~~~p~~~~lG~~~~i~g   95 (567)
                      .+...|+..+.....  ++++|++|+++++|+| ..+..||.|.|||++++. +|++|++++.+++|+.|.+|.+++|+|
T Consensus         6 ~~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G   84 (134)
T 3b7x_A            6 APGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWG   84 (134)
T ss_dssp             ---CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHH
T ss_pred             CCCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHH
Confidence            345566666554442  3799999999999999 778899999999999988 699999998767899999999999999


Q ss_pred             HHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400           96 WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus        96 l~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |++||.+|++|++++|+|||++|||+.+.++.|||+++++|+|+|+++.
T Consensus        85 ~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           85 MELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            9999999999999999999999999999888899999999999999884

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.89  E-value=8.1e-23  Score=175.99  Aligned_cols=112  Identities=38%  Similarity=0.661  Sum_probs=104.3

Q ss_pred             eeecCCCeEEEEEEccc--CCCCCCCCCEEEEEEEEEEc-CCCEEeecCC--CCCcEEEEccCCcchHHHHHHhcccccc
Q 008400           32 KEIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKG  106 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~--G~~~~~~gd~V~v~Y~~~~~-~g~~~~~t~~--~~~p~~~~lG~~~~i~gl~~~l~~m~~G  106 (567)
                      ..++++|++|+++++|+  | ..++.||.|.|||++++. ||++|++++.  .+.|+.|.+|.+++|+||+++|.+|++|
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~G   85 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVG   85 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTT
T ss_pred             eEECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCC
Confidence            34588999999999999  6 889999999999999998 9999999973  3589999999999999999999999999


Q ss_pred             cEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       107 e~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      ++++|.|||++|||+.+.+ .||++++++|+|+|+++.+
T Consensus        86 e~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           86 EKRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             CEEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            9999999999999999965 8999999999999999875

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=4.1e-23  Score=185.21  Aligned_cols=112  Identities=43%  Similarity=0.696  Sum_probs=105.0

Q ss_pred             eeecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400           32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~  110 (567)
                      ...+++|++|+++++|+| .. |..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++
T Consensus        32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~  108 (167)
T 1jvw_A           32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR  108 (167)
T ss_dssp             EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence            456899999999999999 66 999999999999998899999999876689999996  89999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeec
Q 008400          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (567)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~  146 (567)
                      |+|||++|||..+.++.||||++++|+|+|+++...
T Consensus       109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~  144 (167)
T 1jvw_A          109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG  144 (167)
T ss_dssp             EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred             EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC
Confidence            999999999999988899999999999999999753

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=2.4e-23  Score=184.69  Aligned_cols=115  Identities=26%  Similarity=0.449  Sum_probs=98.4

Q ss_pred             ecCCCeEEEEEEcccCCCCC--CCCCEEEEEEEEEEcC--CCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEE
Q 008400           34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (567)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~~~--~~gd~V~v~Y~~~~~~--g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~  109 (567)
                      ++.+||+|+++++|+| ..|  ..||.|.|||++++.|  |++||||+.+++|+.|.+|.+++|+||++||.+|++|+++
T Consensus         7 ~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             ccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            5789999999999999 544  5799999999999864  9999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCCC-------C-CCCC-----------------------------CCCCCcEEEEEEEEEEeecccc
Q 008400          110 VFTIPPELAYGES-------G-SPPT-----------------------------IPPNATLQFDVELLSWTSVKDI  149 (567)
Q Consensus       110 ~i~ip~~~ayg~~-------~-~~~~-----------------------------ip~~~~l~~~vel~~~~~~~~~  149 (567)
                      +|+|||++|||..       + ....                             ++++++|+|+|||++|..+...
T Consensus        86 ~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey  162 (165)
T 2lkn_A           86 QFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY  162 (165)
T ss_dssp             EEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred             EEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence            9999999999921       0 0011                             2344789999999999876543

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.89  E-value=3.1e-22  Score=173.22  Aligned_cols=112  Identities=46%  Similarity=0.833  Sum_probs=101.3

Q ss_pred             eecCCCe-EEEEEEcc---cCCCCCCCCCEEEEEEEEEE-cCCCEEeecCCCCCcEEEEccCCcchHHHHHHhccccccc
Q 008400           33 EIGNQGL-KKKLVKEG---EGWDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (567)
Q Consensus        33 ~~~~~g~-~~~~~~~G---~G~~~~~~gd~V~v~Y~~~~-~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge  107 (567)
                      .++++|+ +++++++|   +| ..|..||.|.|||++++ .||++|++++..+.|+.|.+|.+++++||+++|.+|++|+
T Consensus        11 ~~~~~g~~~~~il~~G~~g~g-~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge   89 (129)
T 2vn1_A           11 ELTADGGVIKTILKKGDEGEE-NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNE   89 (129)
T ss_dssp             ECSTTSSEEEEEEECCCCSGG-GSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             EECCCCCEEEEEEeCCCCCCC-CcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCC
Confidence            3456665 45789966   45 78999999999999998 7999999998767899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       108 ~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      +++|.|||++|||+.+.++.||++++++|+|+|+++..
T Consensus        90 ~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           90 KCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999999999998888999999999999999875

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.89  E-value=1.3e-22  Score=188.50  Aligned_cols=106  Identities=34%  Similarity=0.616  Sum_probs=101.4

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|+++   +.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            45899999999999999 89999999999999999999999999   589999998  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |||++|||..+.++.|||+++++|+|+|++|+
T Consensus       187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999999999888899999999999999985

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.89  E-value=1.7e-22  Score=188.62  Aligned_cols=111  Identities=52%  Similarity=0.873  Sum_probs=105.6

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEE
Q 008400           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i  111 (567)
                      ...+++|++|+++++|+| ..|..||.|.|||++++.||++|++++..+.|+.|.+|.+++++||++||.+|++|++++|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            355899999999999999 7899999999999999999999999988778999999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      .|||++|||+.+.++.|||+++++|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999988889999999999999874

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=2.4e-22  Score=187.17  Aligned_cols=111  Identities=36%  Similarity=0.624  Sum_probs=104.7

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEE
Q 008400           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i  111 (567)
                      ...+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++|
T Consensus       101 v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v  177 (213)
T 1fd9_A          101 VVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEI  177 (213)
T ss_dssp             EEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             cEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEE
Confidence            356899999999999999 89999999999999999999999999876789999996  899999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      +|||++|||+.+.++.|||+++++|+|+|+++..
T Consensus       178 ~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          178 YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            9999999999998888999999999999999864

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=9.6e-23  Score=176.24  Aligned_cols=111  Identities=41%  Similarity=0.706  Sum_probs=103.3

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcc------ccc
Q 008400           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~------m~~  105 (567)
                      ...+++|++|+++++|+| ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++|+||+++|.|      |++
T Consensus         7 ~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~   85 (129)
T 1u79_A            7 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   85 (129)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence            345889999999999999 8899999999999999889999999986568999999999999999999999      999


Q ss_pred             ccEEEEEecCCcccCCCCCC-----CCCCCCCcEEEEEEEEEE
Q 008400          106 GENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW  143 (567)
Q Consensus       106 Ge~~~i~ip~~~ayg~~~~~-----~~ip~~~~l~~~vel~~~  143 (567)
                      |++++|.|||++|||+.+.+     +.||++++++|+|+|+++
T Consensus        86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999999863     479999999999999986

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=176.91  Aligned_cols=110  Identities=34%  Similarity=0.574  Sum_probs=102.4

Q ss_pred             eecCCCe-EEEEEEcccCCC--CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEE
Q 008400           33 EIGNQGL-KKKLVKEGEGWD--TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (567)
Q Consensus        33 ~~~~~g~-~~~~~~~G~G~~--~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~  109 (567)
                      .++++|+ +|+++++|+| .  .|..||.|.|||++++.||++|+++    +|+.|.+|.+++|+||+++|.+|++|+++
T Consensus        38 ~~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~  112 (157)
T 2jwx_A           38 DILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA  112 (157)
T ss_dssp             ESSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEE
T ss_pred             eECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEE
Confidence            4678886 8999999999 5  8999999999999999899999984    79999999999999999999999999999


Q ss_pred             EEEecCCcccCCCC-CCCCCCCCCcEEEEEEEEEEeecc
Q 008400          110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVK  147 (567)
Q Consensus       110 ~i~ip~~~ayg~~~-~~~~ip~~~~l~~~vel~~~~~~~  147 (567)
                      +|+|||++|||..+ .++.||++++++|+|+|+++....
T Consensus       113 ~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          113 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECS
T ss_pred             EEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEccc
Confidence            99999999999999 677899999999999999997654

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.88  E-value=5.4e-22  Score=168.91  Aligned_cols=108  Identities=34%  Similarity=0.563  Sum_probs=100.3

Q ss_pred             eecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400           33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (567)
Q Consensus        33 ~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~  110 (567)
                      .++++| ++|+++++|+|. ..|+.||.|.|||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|++++
T Consensus         8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~   83 (118)
T 2awg_A            8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM   83 (118)
T ss_dssp             ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEE
Confidence            456777 999999999993 27999999999999998899999984    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |.|||++|||..+.++.||++++++|+|+|++++
T Consensus        84 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           84 VTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999888899999999999999875

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.87  E-value=9.9e-22  Score=184.26  Aligned_cols=108  Identities=49%  Similarity=0.915  Sum_probs=101.7

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      .++++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence            34789999999999999 89999999999999999999999999887789999996  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |||+++||+.+.++ |||+++++|+|+|++++
T Consensus       194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred             ECchhhcCcCCCCC-CCCCCEEEEEEEEEEeC
Confidence            99999999999875 99999999999999873

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=9.4e-22  Score=171.19  Aligned_cols=113  Identities=34%  Similarity=0.539  Sum_probs=103.2

Q ss_pred             eeecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEE
Q 008400           32 KEIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (567)
Q Consensus        32 ~~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~  109 (567)
                      ..++++| ++|+++++|+|. ..|..||.|.|||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|+++
T Consensus        11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~   86 (135)
T 2d9f_A           11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA   86 (135)
T ss_dssp             EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEE
T ss_pred             cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence            4556777 999999999992 28999999999999999899999973    79999999999999999999999999999


Q ss_pred             EEEecCCcccCCCC-CCCCCCCCCcEEEEEEEEEEeeccc
Q 008400          110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD  148 (567)
Q Consensus       110 ~i~ip~~~ayg~~~-~~~~ip~~~~l~~~vel~~~~~~~~  148 (567)
                      +|.|||++|||..+ .++.|||+++++|+|+|+++....+
T Consensus        87 ~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           87 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             EEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             EEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            99999999999998 6778999999999999999986544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.87  E-value=5.5e-22  Score=201.70  Aligned_cols=271  Identities=22%  Similarity=0.281  Sum_probs=195.6

Q ss_pred             ccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCC---CcchHHHHHhhccCCcEEE
Q 008400          146 VKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVL  222 (567)
Q Consensus       146 ~~~~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~  222 (567)
                      ..+++.++++.+++++.|.|...|..|+.|+|+|++++ +|++|+++ |+.|.+|.|.   ++++|+++|.+|+.|+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~   95 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   95 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEE
Confidence            34567789999999999999778999999999999999 89999887 8999999886   5899999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecC
Q 008400          223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD  302 (567)
Q Consensus       223 i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~  302 (567)
                      +.|||+++||..|.+.    ..||+++++.|++.|.+|........      +.+.     ..|..              
T Consensus        96 l~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~~------~a~~-----~~p~~--------------  146 (336)
T 1p5q_A           96 VYLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESWE------MNSE-----EKLEQ--------------  146 (336)
T ss_dssp             EEECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGGG------CCHH-----HHHHH--------------
T ss_pred             EEECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchhc------CCHH-----HHHHH--------------
Confidence            9999999999888641    25899999999999998754222110      0000     00000              


Q ss_pred             CcEEEeccCCCCcccEEEEcCcc-chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          303 GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       303 g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      ....    . .. ...-+..|+. .-+..++.++...           |.                 ...+         
T Consensus       147 a~~~----~-~~-g~~~~~~g~~~~A~~~y~~Al~~~-----------p~-----------------~~~~---------  183 (336)
T 1p5q_A          147 STIV----K-ER-GTVYFKEGKYKQALLQYKKIVSWL-----------EY-----------------ESSF---------  183 (336)
T ss_dssp             HHHH----H-HH-HHHHHHHTCHHHHHHHHHHHHHHT-----------TT-----------------CCCC---------
T ss_pred             HHHH----H-HH-HHHHHHCCCHHHHHHHHHHHHHHh-----------hc-----------------cccC---------
Confidence            0000    0 00 0000111211 1223344444221           10                 0000         


Q ss_pred             eecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc
Q 008400          382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL  461 (567)
Q Consensus       382 ~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~  461 (567)
                      .     .....+.....+..+.+.|..+++.|+|++|+..|++|+.+.+.+.               .+++++|.+|..+
T Consensus       184 ~-----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~  243 (336)
T 1p5q_A          184 S-----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAV  243 (336)
T ss_dssp             C-----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHT
T ss_pred             C-----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHC
Confidence            0     0001122334477889999999999999999999999999876533               4589999999999


Q ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 008400          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALE  510 (567)
Q Consensus       462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~  510 (567)
                      ++|++|+.+++++++++|++..++++++.++..++++++| ...|++++.
T Consensus       244 g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          244 NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 456666664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.86  E-value=1.4e-21  Score=176.43  Aligned_cols=154  Identities=29%  Similarity=0.392  Sum_probs=131.7

Q ss_pred             hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC---CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHH
Q 008400          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (567)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai  468 (567)
                      .++++..+..+++.|+.+|+.|+|.+|+..|.+|+.+++...   ....++..........+|+|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            457788999999999999999999999999999999865421   22334556667788899999999999999999999


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~-~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      .+|+++|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|. .+...+..+..++++.++++++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999998 88999999999999999999999999996

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=9.8e-21  Score=156.84  Aligned_cols=96  Identities=52%  Similarity=0.898  Sum_probs=90.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (567)
                      ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.+.++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            67899999999999998899999999876689999999999999999999999999999999999999999998888999


Q ss_pred             CCcEEEEEEEEEEeec
Q 008400          131 NATLQFDVELLSWTSV  146 (567)
Q Consensus       131 ~~~l~~~vel~~~~~~  146 (567)
                      +++++|+|+|+++...
T Consensus        84 ~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           84 GATLVFEVELLKIERR   99 (102)
T ss_dssp             TCCEEEEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEeccc
Confidence            9999999999998753

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.84  E-value=4e-20  Score=162.66  Aligned_cols=116  Identities=39%  Similarity=0.599  Sum_probs=106.2

Q ss_pred             ceeeee--cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccC
Q 008400          262 TVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMK  339 (567)
Q Consensus       262 ~~~d~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~  339 (567)
                      ..+|++  .|++++++++++|.|...|..++.|+|||++++.||++|+++.  .++.|++|.+|.+.+|+||+.+|..|+
T Consensus        25 ~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~  102 (144)
T 3o5e_A           25 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMK  102 (144)
T ss_dssp             HCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESG--GGTSCEEEETTSSSSCHHHHHHHTTCC
T ss_pred             ccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeec--ccCCCeEEEeCCCcccHHHHHHHhCCC
Confidence            346677  7999999999999997789999999999999999999999865  357899999999999999999999999


Q ss_pred             CCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       340 ~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      +||++.|.|+|.++||+.+..   ..|||+++|+|+|+|+++.
T Consensus       103 ~Ge~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          103 KGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             BTCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence            999999999999999998865   4799999999999999886

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.82  E-value=7.4e-20  Score=159.18  Aligned_cols=118  Identities=32%  Similarity=0.594  Sum_probs=100.3

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008400          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (567)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip  226 (567)
                      .++++.++++++|+|...+..+|.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            678999999999999768999999999999999999999986    7999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee--cCcceeE
Q 008400          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIK  274 (567)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~v~k  274 (567)
                      |+++||+.|.+     +.|||+++|+|+|+|+++.. .++.  +|++|+|
T Consensus        92 ~~~aYG~~g~~-----~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           92 SDYGYGDAGSP-----PKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             hHHcCCCCCCC-----CCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            99999998764     57999999999999999976 4666  6777765

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.82  E-value=1.5e-19  Score=155.97  Aligned_cols=114  Identities=39%  Similarity=0.619  Sum_probs=103.9

Q ss_pred             eeee--cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCC
Q 008400          264 SEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (567)
Q Consensus       264 ~d~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~G  341 (567)
                      +|++  .|+++.++++++|.|...|..++.|+|||++++.||++|+++.  .++.|++|.+|.+.+|+||+.+|..|++|
T Consensus        11 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~G   88 (128)
T 3o5q_A           11 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKKG   88 (128)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHTTCCTT
T ss_pred             ceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecC--CCCCCEEEEECCCCccHHHHHHHhcCCCC
Confidence            4444  6899999999999997789999999999999999999999864  24679999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       342 E~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      |++.|.|++.++||+.+..   ..|||+++|+|+|+|+++.
T Consensus        89 e~~~v~ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           89 EICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CEEEEEEChHHcCCCCCCC---CCcCCCCEEEEEEEEEEec
Confidence            9999999999999998765   3799999999999999886

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.82  E-value=1.5e-19  Score=164.68  Aligned_cols=127  Identities=35%  Similarity=0.503  Sum_probs=102.3

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccCCCCcccEEEEcCcc-chhhHHHHHHhccCCCcEEEE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v  346 (567)
                      +.++.++++++|.|. .|..|+.|+|||++++. +|++|+++..  ++.|+.|.+|.+ .+|+||+.+|..|++||++.|
T Consensus        48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v  124 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (180)
T ss_dssp             ETTEEEEEEECCBSC-CBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEE
T ss_pred             CCceEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEE
Confidence            457999999999995 89999999999999998 5999998753  568999999999 999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEEEeeeccc---ccCCChHHHHHHH
Q 008400          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAA  399 (567)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~---~~~~~~~e~~~~a  399 (567)
                      .|++.++||..+... ...||++++|+|+|+|+++....+   .|+|+.++++..|
T Consensus       125 ~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            999999999887531 246999999999999999998777   8999999998876

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.81  E-value=3.2e-20  Score=164.64  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=78.2

Q ss_pred             cCcceeEEEEeCCCCCCC-CCCCCEEEEEEEEEecC--CcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEE
Q 008400          268 DDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~-p~~~~~v~v~y~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~  344 (567)
                      .+.+|.|+||++|.|... +..|++|+|||+++|.|  |++||+++.  ++.|++|.+|.+++|+||+.+|.+|++||++
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~--rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA--RGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT--TTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc--CCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            467899999999999532 35799999999999965  999999874  7899999999999999999999999999999


Q ss_pred             EEEEcCCCccC
Q 008400          345 LLTIAPEYAFG  355 (567)
Q Consensus       345 ~v~i~~~~~yg  355 (567)
                      .|+|+|+++||
T Consensus        86 ~~~ipp~laYG   96 (165)
T 2lkn_A           86 QFLCDIKHVVL   96 (165)
T ss_dssp             EEECCHHHHSS
T ss_pred             EEEECHHHhcC
Confidence            99999999999

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.81  E-value=3.2e-19  Score=152.13  Aligned_cols=111  Identities=41%  Similarity=0.624  Sum_probs=99.6

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCC-----CCcccEEEEcCccchhhHHHHHHhccCCCcE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~-----~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~  343 (567)
                      ..++.|+|+++|+|...|..++.|+|||.+++.||++|+++...     ....|++|.+|.+.+|+||+.+|..|++||+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            45799999999999778999999999999999999999987531     1248999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      +.|.|++.++||+.+...  ..|||+++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEe
Confidence            999999999999987643  369999999999999876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.81  E-value=1.1e-18  Score=162.96  Aligned_cols=179  Identities=32%  Similarity=0.457  Sum_probs=139.8

Q ss_pred             EEEEEEEEEeeecccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChH-HHHHHHHHHHHH
Q 008400          372 VHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVAC  450 (567)
Q Consensus       372 l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e-~~~~~~~~~~~~  450 (567)
                      ......+..+.+..+.|.++.+++...+..++..|+.++..|+|.+|+..|.+|+.+.+........ .......+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            3344556788889999999999999999999999999999999999999999999988776543322 333345556788


Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ++|+|.||+++++|++|+.+|++++.++|.++++++++|.+|..+|++++|+.+|+++++++|++..+...+..+...++
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHhhhhc
Q 008400          531 EYNKKEAKFYGNMFAKMKSR  550 (567)
Q Consensus       531 ~~~~~e~~~~~~~f~~~~~~  550 (567)
                      +..+.+++.|++||++...-
T Consensus       171 ~~~~~~~~~~~~~f~~~~~~  190 (198)
T 2fbn_A          171 EARKKDKLTFGGMFDKGPLY  190 (198)
T ss_dssp             HHHC----------------
T ss_pred             HHHHHHHHHHHHHhcccchh
Confidence            99999999999999865443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=6.4e-19  Score=152.20  Aligned_cols=114  Identities=31%  Similarity=0.492  Sum_probs=107.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      +.|+.++++|+.+|+.|+|++|+..|++|+++.|.+.               .+|+|+|.||.++|++++|+.+|+++++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---------------ILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999877644               3489999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++|+++++|+++|.+|..+|++++|+.+|+++++++|+|.+++..++.|
T Consensus        76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998888776

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.78  E-value=3.5e-19  Score=154.72  Aligned_cols=115  Identities=29%  Similarity=0.496  Sum_probs=97.8

Q ss_pred             ceeeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCC
Q 008400          262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (567)
Q Consensus       262 ~~~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~  340 (567)
                      .+.+++.++++.++++++|.|. .+..++.|+|||++++. +|++|+++..  +..|++|.+|.+.+|+||+.+|..|++
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~--~~~p~~f~lG~g~~i~G~e~aL~gm~~   94 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYF--RKTPRLMKLGEDITLWGMELGLLSMRR   94 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred             ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCC--CCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence            4578889999999999999995 57789999999999998 6999987642  468999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      ||++.|.|+++++||+.+..+   .|||+++++|+|+|+++.
T Consensus        95 Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           95 GELARFLFKPNYAYGTLGCPP---LIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHHCcCCCCCCC---CcCcCCeEEEEEEEEEEe
Confidence            999999999999999987643   599999999999999875

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.78  E-value=2.2e-18  Score=146.45  Aligned_cols=111  Identities=30%  Similarity=0.414  Sum_probs=101.4

Q ss_pred             eeeeecCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCC
Q 008400          263 VSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (567)
Q Consensus       263 ~~d~~~d~~v~k~il~~G~g~-~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~G  341 (567)
                      +.++++++++.++++++|.|. ..|..++.|+|||.+++.+|++|++      ..|++|.+|.+.+++||+.+|..|++|
T Consensus         6 ~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds------~~p~~f~lG~~~~i~g~e~~l~gm~~G   79 (118)
T 2awg_A            6 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDVG   79 (118)
T ss_dssp             EEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEE------EEEEEEETTSSCSCHHHHHHGGGSCTT
T ss_pred             ceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEEC------CCCEEEEECCCChhHHHHHHHhCCCCC
Confidence            467888999999999999985 3799999999999999999999985      368999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       342 E~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      |++.|.++++++||+.+..   ..|||++++.|+|+|+++.
T Consensus        80 e~~~~~ip~~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           80 ETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CEEEEEEChHHccCCCCCC---CccCCCCeEEEEEEEEEec
Confidence            9999999999999988754   3699999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.78  E-value=2.7e-18  Score=148.45  Aligned_cols=115  Identities=38%  Similarity=0.633  Sum_probs=102.2

Q ss_pred             eeeecCcceeEEEEeCC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCC
Q 008400          264 SEITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (567)
Q Consensus       264 ~d~~~d~~v~k~il~~G-~g-~~~p~~~~~v~v~y~~~l-~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~  340 (567)
                      .+.+.+|.++++++++| .| ...|..++.|+|||.+++ .+|++|+++..  ++.|++|.+|.+.+++||+.+|..|++
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~--~~~p~~f~lG~g~~i~g~e~~l~gm~~   87 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD--RNVPFKFHLEQGEVIKGWDICVSSMRK   87 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG--TTCCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred             cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC--CCccEEEEeCCCCcCHHHHHHHhCCCC
Confidence            45568899999999987 55 267999999999999999 79999998752  468999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeee
Q 008400          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (567)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (567)
                      ||++.|.|++.++||+.+..   ..|||+++++|+|+|+++.+
T Consensus        88 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           88 NEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHcCCCCCCC---CCcCCCCeEEEEEEEEEEec
Confidence            99999999999999998754   35999999999999999864

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=5.7e-19  Score=156.23  Aligned_cols=139  Identities=16%  Similarity=0.143  Sum_probs=120.7

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHH
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~  473 (567)
                      .....|..+++.|+.+|+.|+|++|+..|++||++.|......   ..........+|+|+|.|+.++|+|++|+.+|++
T Consensus         6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k   82 (159)
T 2hr2_A            6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   82 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3466789999999999999999999999999999998744321   0011223455899999999999999999999999


Q ss_pred             Hhcc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008400          474 VLDL-------DSRNVKAL----YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (567)
Q Consensus       474 al~~-------~p~~~ka~----~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  535 (567)
                      ||++       +|++.++|    ||+|.++..+|++++|+.+|++|++++|++..+...+..+++.+++..++
T Consensus        83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999       99999999    99999999999999999999999999999999999999888877766543

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.78  E-value=3.6e-18  Score=144.13  Aligned_cols=108  Identities=31%  Similarity=0.500  Sum_probs=97.9

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i  348 (567)
                      +.++.++++++|.|..+|..++.|++||.+++.||++|+++..  ++.|++|.+|.+.+++||+.+|..|++||++.|.+
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD--RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT--TTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC--CCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            4569999999999965599999999999999999999998752  46899999999999999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      ++.++||+.+..   ..|||+++++|+|+|+++
T Consensus        83 p~~~ayG~~~~~---~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           83 PGPYAYGPRGFP---GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEE
T ss_pred             CHHHCcCCCCCC---CCcCCCCeEEEEEEEEEe
Confidence            999999988764   359999999999999876

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.78  E-value=2.3e-18  Score=143.90  Aligned_cols=106  Identities=31%  Similarity=0.591  Sum_probs=96.1

Q ss_pred             ceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcC
Q 008400          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (567)
Q Consensus       271 ~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~  350 (567)
                      ++.++++++|+|...|..++.|++||.+++.||++|+++..  ++.|++|.+|.+.+++||+.+|..|++||++.+.+++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECH
Confidence            47899999999976699999999999999999999998642  3579999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      .++||+.+..   ..|||++++.|+|+|+++
T Consensus        79 ~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           79 DYAYGATGHP---GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEE
T ss_pred             HHccCCCCCC---CCcCCCCeEEEEEEEEEe
Confidence            9999988764   369999999999999876

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.77  E-value=2.7e-18  Score=152.02  Aligned_cols=114  Identities=30%  Similarity=0.419  Sum_probs=102.2

Q ss_pred             eeeecCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCc
Q 008400          264 SEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNE  342 (567)
Q Consensus       264 ~d~~~d~~v~k~il~~G~g~-~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE  342 (567)
                      .+.+++|.+.++++++|+|. ..|..++.|+|||.+++.||++|++      +.|++|.+|.+.+|+||+.+|..|++||
T Consensus        37 ~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds------~~p~~f~lG~g~vi~G~eeaL~gMk~Ge  110 (157)
T 2jwx_A           37 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDVGE  110 (157)
T ss_dssp             EESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEE------EEEEEEETTTTSSCHHHHHHTTTSCTTC
T ss_pred             ceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeec------CCCEEEEeCCCChhHHHHHHHcCCCCCC
Confidence            56778888899999999994 4799999999999999999999986      3689999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecc
Q 008400          343 VALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK  385 (567)
Q Consensus       343 ~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~  385 (567)
                      ++.|.|+++++||+.+...  ..|||+++|+|+|+|+++.+..
T Consensus       111 ~~~v~IP~~~aYG~~g~~~--~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          111 TAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEEEEECGGGTTTTTCCSS--SCCCTTCCEEEEEEEEEEEECS
T ss_pred             EEEEEECchhcCCcccccC--CCcCCCCeEEEEEEEEEEEccc
Confidence            9999999999999887221  3699999999999999997654

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.76  E-value=3.6e-18  Score=146.83  Aligned_cols=114  Identities=21%  Similarity=0.363  Sum_probs=100.9

Q ss_pred             ecCcceeEEEEeCCCC-CCCCCCCCEEEEEEEEEec-CCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEE
Q 008400          267 TDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (567)
Q Consensus       267 ~~d~~v~k~il~~G~g-~~~p~~~~~v~v~y~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~  344 (567)
                      +.+.++.++++++|.+ ...|..++.|+|||++++. ||++|+++.......|++|.+|.+.+++||+.+|..|++||++
T Consensus         9 ~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~   88 (125)
T 4dip_A            9 IPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKR   88 (125)
T ss_dssp             CCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCEE
T ss_pred             ECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence            4577899999999983 3689999999999999998 9999998752124689999999999999999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeec
Q 008400          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (567)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~  384 (567)
                      .|.|++.++||+.+..    .|||+++|+|+|+|+++.+.
T Consensus        89 ~~~ip~~~aYG~~g~~----~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           89 KLIIPPALGYGKEGKG----KIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             EEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEECC
T ss_pred             EEEEChHHhcCCCCCC----CCCCCCeEEEEEEEEEEEcC
Confidence            9999999999998743    69999999999999998753

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3.4e-18  Score=148.64  Aligned_cols=121  Identities=28%  Similarity=0.371  Sum_probs=106.0

Q ss_pred             eeeeecCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCC
Q 008400          263 VSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (567)
Q Consensus       263 ~~d~~~d~~v~k~il~~G~g~-~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~G  341 (567)
                      +.++++++++.++++++|.|. ..|..++.|+|||++++.||++|++      ..|++|.+|.+.+++||+.+|..|++|
T Consensus        10 ~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds------~~p~~f~lG~g~~i~G~e~~L~gm~~G   83 (135)
T 2d9f_A           10 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDVG   83 (135)
T ss_dssp             CEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEE------EEEEEEETTSCCSCTTTTTTGGGSCTT
T ss_pred             CcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEec------CCCEEEEeCCCChhHHHHHHHhCCCCC
Confidence            467788999999999999984 4799999999999999999999985      468999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCC
Q 008400          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN  391 (567)
Q Consensus       342 E~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~  391 (567)
                      |++.|.++++++||+.+...  ..|||++++.|+|+|+++....+.-.++
T Consensus        84 e~~~v~ip~~~aYG~~~~~~--~~Ip~~~~l~f~vel~~v~~~~~~e~~s  131 (135)
T 2d9f_A           84 ETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDRPDLEMSG  131 (135)
T ss_dssp             CEEEEEECHHHHTCTTCCSS--SCCCTTCCEEEEEEEEEEESSCSSSSCC
T ss_pred             CEEEEEEChhHccCcCCcCC--CccCCCCeEEEEEEEEEeecCCchhhcC
Confidence            99999999999999887322  3699999999999999998755543333

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.76  E-value=9.3e-18  Score=150.37  Aligned_cols=121  Identities=26%  Similarity=0.408  Sum_probs=103.8

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      -+.++.++++++|.|...|..|+.|+|||.+++.||++|+++..  ++.|++|.+  +.+|+||+.+|..|++||++.|.
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~  110 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKPTTFRP--NEVIKGWTEALQLMREGDRWRLF  110 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEE
Confidence            46679999999999954499999999999999999999998752  458999999  47999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEeeecccccCCChHHHHH
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE  397 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~  397 (567)
                      ||+.++||+.+..   ..||||++|+|+|+|+++.+.  .+.++.++.-+
T Consensus       111 Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~  155 (167)
T 1jvw_A          111 IPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE  155 (167)
T ss_dssp             ECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred             ECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence            9999999998764   369999999999999999853  44566655433

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.75  E-value=1.2e-17  Score=144.48  Aligned_cols=109  Identities=34%  Similarity=0.537  Sum_probs=98.6

Q ss_pred             ecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEE
Q 008400          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (567)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v  346 (567)
                      +.+.++.++++++|.| ..|..|+.|+|||.+++.||++|+++.  +.+.|++|.+|.+.+++||+.+|..|++||++.|
T Consensus        25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v  101 (133)
T 2y78_A           25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSK--DRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  101 (133)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETT--TTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEE
T ss_pred             ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccC--cCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEE
Confidence            4567899999999999 579999999999999999999999875  2468999999999999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      .|++.++||+.+..   ..|||+++++|+|+|+++
T Consensus       102 ~ip~~~aYG~~~~~---~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          102 TIPPQLGYGARGAG---GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCC---CCCCCCCeEEEEEEEEEC
Confidence            99999999988754   369999999999999864

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.75  E-value=9.4e-19  Score=156.07  Aligned_cols=132  Identities=22%  Similarity=0.332  Sum_probs=98.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      .++.||.|.|||++++.||++|++++..++|+.|.+|.+++||||++||.+|++|++++|.|||++|||+++        
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~--------   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS--------   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            578999999999999999999999987668999999999999999999999999999999999999999877        


Q ss_pred             CcEEEEEEEEEEeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008400          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (567)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (567)
                      ..++..+....|...... ..+..+..-...|.   +....-.++.|++++||+|++.++.++-
T Consensus        96 ~~lv~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v  158 (169)
T 4dt4_A           96 PDLIQYFSRREFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI  158 (169)
T ss_dssp             GGGEEEEEGGGGTTTCCC-CTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred             hHHEEEeCHHHCCCcCCC-CCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEE
Confidence            456666655544321111 11111111111111   1122234589999999999999887654

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.75  E-value=1.3e-17  Score=143.79  Aligned_cols=105  Identities=36%  Similarity=0.609  Sum_probs=94.0

Q ss_pred             eeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcCC
Q 008400          272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE  351 (567)
Q Consensus       272 v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~  351 (567)
                      +.|+++++|.|..+|..|+.|+|||.+++.||++|+++.  .++.|++|.+|.+.+++||+.+|..|++||++.|.|++.
T Consensus        26 ~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip~~  103 (130)
T 2lgo_A           26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSR--SRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQ  103 (130)
T ss_dssp             CCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTT--TTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEEECTT
T ss_pred             EEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccC--cCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECcH
Confidence            345699999997559999999999999999999998764  245899999999999999999999999999999999999


Q ss_pred             CccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          352 YAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       352 ~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      ++||+.+..   ..|||+++++|+|+|+++
T Consensus       104 ~aYG~~~~~---~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          104 LAYGERGYP---PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             TSTTTTCCS---TTSCSSCCEEEEEEEEEC
T ss_pred             HHCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            999988754   359999999999999864

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.75  E-value=5e-18  Score=149.89  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=99.5

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP  129 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~-~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip  129 (567)
                      ..++.||.|++||++++. ||++|++++.. .|+.|.+|.++++|||++||.||++|++++|.|||++|||+++      
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence            567899999999999988 99999999864 7999999999999999999999999999999999999999876      


Q ss_pred             CCCcEEEEEEEEEEeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008400          130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (567)
Q Consensus       130 ~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (567)
                        ..+++.+....| ..... ..|..+..-...|.   +...--.++.|+++|||+|++.++.++-
T Consensus        78 --~~~v~~v~~~~f-~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  139 (151)
T 2kr7_A           78 --SSYLQEVPRDQF-EGIEL-EKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRF  139 (151)
T ss_dssp             --SCEEEEEEGGGG-TTSCC-CTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEE
T ss_pred             --cceEEEEcHHHc-CCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEE
Confidence              467777776666 11111 11212111111111   1122335589999999999999887764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.75  E-value=1.5e-17  Score=170.91  Aligned_cols=155  Identities=35%  Similarity=0.599  Sum_probs=135.5

Q ss_pred             ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH
Q 008400          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (567)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~  469 (567)
                      +.++.+..+..++..|+.+++.|+|++|+..|++|+++.+... ....++..........+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5788899999999999999999999999999999999765431 111233334566778899999999999999999999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      +|++||+++|+++++|+++|.+|..+++|++|+.+|++|++++|++..++..+..+...+++.+++++++|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999984

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.74  E-value=1.1e-18  Score=163.40  Aligned_cols=168  Identities=24%  Similarity=0.312  Sum_probs=114.0

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCccc
Q 008400           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (567)
Q Consensus        53 ~~~gd~V~v~Y~~~~~~g~~~~~t~~~-------------~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ay  119 (567)
                      ++.||.|.|||++++ ||++|++|+..             +.|+.|.+|.+++||||++||.||++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEEEEeeccccc-cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEE
Q 008400          120 GESGSPPTIPPNATLQFDVELLSWTSVKDIC-KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT  198 (567)
Q Consensus       120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~~~-~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~  198 (567)
                      |+++        ..++..+....+... ++. ..|..+. + ....+...--.++.|++++||+|++.++.++-+-....
T Consensus        81 Ge~~--------~~lv~~vp~~~f~~~-~~~~~vG~~~~-~-~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~  149 (231)
T 3prb_A           81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVV  149 (231)
T ss_dssp             CCCC--------GGGEEEEETHHHHTT-TCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEC
T ss_pred             CCCC--------hHHEEecCHHHCCcc-cCCCCCCcEEE-e-cCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEe
Confidence            9987        345555544333211 111 1111111 0 00012223334589999999999999987765433332


Q ss_pred             ecCCCCcchHHHHHhh----cc---CCcEEEEEecCCCccC
Q 008400          199 VKDGHFCPTLAKAVKT----MK---KGEKVLLAVKPQYGFG  232 (567)
Q Consensus       199 ~g~~~~~~gl~~~l~~----m~---~Ge~~~i~ip~~~~~g  232 (567)
                      -...+-+.++-.-..+    |+   .++++.|.+|++..|-
T Consensus       150 eat~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~  190 (231)
T 3prb_A          150 DDKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFI  190 (231)
T ss_dssp             CSHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGGS
T ss_pred             cCCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhhh
Confidence            2222222222222221    22   4678899999987653

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.74  E-value=1.3e-18  Score=153.75  Aligned_cols=129  Identities=27%  Similarity=0.388  Sum_probs=96.6

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCccc
Q 008400           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (567)
Q Consensus        53 ~~~gd~V~v~Y~~~~~~g~~~~~t~~~-------------~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ay  119 (567)
                      ++.||.|+|||++++ ||++|++|+..             +.|+.|.+|.+++||||++||.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEEEEeeccccc-cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008400          120 GESGSPPTIPPNATLQFDVELLSWTSVKDIC-KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (567)
Q Consensus       120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~~~-~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (567)
                      |+++        ..++..+....+... ++. ..+..+. + ....+....-.++.|+++|||+|++.++.++-+
T Consensus        81 G~~~--------~~~V~~v~~~~f~~~-~~~~~~G~~~~-~-~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~  144 (157)
T 3pr9_A           81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIK  144 (157)
T ss_dssp             CCCC--------GGGEEEEEHHHHHHT-TCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred             CCCC--------hHhEEEcCHHHCCcc-cCCcCCCcEEE-e-cCCCeEEEEEcCCEEEEECCCccCCCeEEEEEE
Confidence            9987        455555555444321 111 1121111 1 000122333356899999999999999877653

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.73  E-value=2.7e-17  Score=152.77  Aligned_cols=104  Identities=26%  Similarity=0.484  Sum_probs=95.6

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      -+.++.++++++|+| ..|..++.|+|||.+++.||++|+++     +.|++|.+|  .+|+||+.+|..|++||++.|.
T Consensus       115 ~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss-----~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          115 LADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS-----TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             CGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC-----SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc-----CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            466799999999999 58999999999999999999999986     578999998  7999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      |||.++||+.+...   .|||+++|+|+|+|+++.
T Consensus       187 IPp~lAYG~~g~~~---~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGD---LIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCC---CCCCCCeEEEEEEEEEEe
Confidence            99999999987643   599999999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.73  E-value=4.4e-17  Score=151.96  Aligned_cols=122  Identities=30%  Similarity=0.453  Sum_probs=104.6

Q ss_pred             EEEeecccceeeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHH
Q 008400          254 ALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR  333 (567)
Q Consensus       254 ~v~l~~~~~~~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~  333 (567)
                      ++-+....-....+.+.++.++++++|.|. .|..|+.|+|||++++.||++|+++.  .++.|++|.+|.+.+++||+.
T Consensus        88 ~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G~-~~~~gd~V~v~Y~g~l~dG~~fdss~--~~~~P~~f~lG~g~vi~G~ee  164 (209)
T 3uf8_A           88 EAHREQIGGSTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWLTDGQKFDSSK--DRNDPFAFVLGGGMVIKGWDE  164 (209)
T ss_dssp             EEECSCTTCCCCEECTTSCEEEEEECCCSC-BCCTTCEEEEEEEEEETTSCEEEESG--GGTCCEEEETTSSSSCHHHHH
T ss_pred             hhhccccccccccCCCCceEEEEEEcCCCC-cCCCCCEEEEEEEEEECCCCEEEEcc--ccCCCEEEEeCCCccchhHHH
Confidence            333433332234456788999999999994 69999999999999999999999875  357899999999999999999


Q ss_pred             HHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       334 ~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      +|..|++||++.|.+||.++||+.+..+   .|||+++|+|+|+|+++
T Consensus       165 aL~gM~~Ge~~~v~Ipp~~aYG~~g~~~---~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          165 GVQGMKVGGVRRLTIPPQLGYGARGAAG---VIPPNATLVFEVELLDV  209 (209)
T ss_dssp             HHTTCBTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEC
T ss_pred             HHhCCCCCCEEEEEECcHHhCCCCCCCC---CcCCCCeEEEEEEEEEC
Confidence            9999999999999999999999987653   59999999999999864

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.72  E-value=8.9e-19  Score=154.72  Aligned_cols=131  Identities=23%  Similarity=0.384  Sum_probs=95.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcc
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA  118 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~-------------~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~a  118 (567)
                      +++.||.|.+||++++.||++|++|+.             ...|+.|.+|.++++|||++||.||++|++++|.|||++|
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a   80 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA   80 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence            367899999999999889999999963             2379999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEEEEeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008400          119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (567)
Q Consensus       119 yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (567)
                      ||+++        ..+++.+.+..|.........+..+. + ..-.+......++.|+++|||++++.++.++-
T Consensus        81 YG~~~--------~~~v~~v~~~~f~~~~~~~~~G~~~~-~-~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  144 (151)
T 1ix5_A           81 YGNRN--------EMLIQKIPRDAFKEADFEPEEGMVIL-A-EGIPATITEVTDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             SCSCC--------STTBCCEETHHHHTSTTCCCTTEEEE-S-SSCEEEEEEEETTEEEEECCCSSTTCCEEEEC
T ss_pred             CCCCC--------ccEEEEEEHHHcCccCCcccccCEEE-E-CCeEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            99876        45566666655532000011111110 0 00011122224589999999999999987654

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.72  E-value=1.4e-17  Score=143.66  Aligned_cols=109  Identities=19%  Similarity=0.345  Sum_probs=96.2

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhh------ccCCcE
Q 008400          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGEK  220 (567)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge~  220 (567)
                      .+.++.++++..|.| ..+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+      |++|++
T Consensus        10 ~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge~   88 (129)
T 1u79_A           10 SPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGK   88 (129)
T ss_dssp             CTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTCE
T ss_pred             CCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCCE
Confidence            456788999999998 67999999999999999999999986    6899999999999999999998      999999


Q ss_pred             EEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008400          221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (567)
Q Consensus       221 ~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (567)
                      +++.|||+++||+.+.+..+....|||+++|+|+|+|+++
T Consensus        89 ~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           89 RTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            9999999999998775211112469999999999999875

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.71  E-value=1.3e-17  Score=152.53  Aligned_cols=130  Identities=18%  Similarity=0.213  Sum_probs=97.1

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008400           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (567)
Q Consensus        53 ~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~  132 (567)
                      ++.||.|+|+|++++.||++|++++.. +|+.|.+|.+++||||+++|.+|++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~--------~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC--------T
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC--------h
Confidence            678999999999998899999999864 8999999999999999999999999999999999999999876        3


Q ss_pred             cEEEEEEEEEEeeccccccccceeeeeeecc--ccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008400          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (567)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (567)
                      .+++.|....|.....+ ..+..+......|  .+..+...++.|+++||++|++.++.++-
T Consensus        74 ~lV~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v  134 (196)
T 2kfw_A           74 NLVQRVPKDVFMGVDEL-QVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNV  134 (196)
T ss_dssp             TTCEEECGGGCCCSSCC-CTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEE
T ss_pred             hhEEEEEHHHCCCccCc-ccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            45555555444321111 1122221111111  11234446789999999999999876654

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.70  E-value=4.9e-17  Score=145.95  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=97.1

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008400           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (567)
Q Consensus        53 ~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~  132 (567)
                      ++.||.|+|+|++++.||++|++++.. +|+.|.+|.+++||||++||.||++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~--------~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC--------T
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC--------h
Confidence            678999999999998899999999864 7999999999999999999999999999999999999999886        3


Q ss_pred             cEEEEEEEEEEeeccccccccceeeeeeeccc--cccCCCCCCeEEEEEEEEeCCCeEeeeccceE
Q 008400          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE--KWENPKDLDEVLVNYEARLEDGMVVGKADGVE  196 (567)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~--g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~  196 (567)
                      .+++.|....|.....+ ..+..+..-...|.  +....-.++.|+++||++|++.++.++-+-..
T Consensus        74 ~~v~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~  138 (171)
T 2k8i_A           74 NLVQRVPKDVFMGVDEL-QVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVA  138 (171)
T ss_dssp             TSEEEEEGGGGTTSSCC-CTTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEEE
T ss_pred             hhEEEeeHHHCCcccCc-cCCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEE
Confidence            45555555444211111 11111111000110  11122245899999999999999877654333

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.69  E-value=1.7e-16  Score=147.62  Aligned_cols=109  Identities=26%  Similarity=0.430  Sum_probs=97.6

Q ss_pred             ecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEE
Q 008400          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (567)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v  346 (567)
                      +.+.++.++++++|+| ..|..++.|+|||.+++.||++|+++..  ++.|++|.+  +.+|+||+.+|..|++||++.|
T Consensus       103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v  177 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEK--TGKPATFQV--SQVIPGWTEALQLMPAGSTWEI  177 (213)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHH--HCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEE
T ss_pred             ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEc--CchhhHHHHHHcCCCCCCEEEE
Confidence            3466799999999999 5899999999999999999999998752  468999999  4799999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEEEeee
Q 008400          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (567)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (567)
                      .||+.++||+.+..   ..|||+++|+|+|+|+++.+
T Consensus       178 ~IP~~laYG~~g~~---~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          178 YVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EECGGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             EECchhccCccCCC---CCCCCCCeEEEEEEEEEEEc
Confidence            99999999998753   36999999999999999864

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.68  E-value=9.6e-17  Score=132.68  Aligned_cols=91  Identities=25%  Similarity=0.445  Sum_probs=84.1

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008400          167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE  242 (567)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~  242 (567)
                      ..+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++++.|||+++||+.+.+     
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-----   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP-----   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-----
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-----
Confidence            56889999999999999999999986    689999999999999999999999999999999999999988763     


Q ss_pred             CCCCCCCeEEEEEEeecccc
Q 008400          243 GAVPPNATLQIALELVSWKT  262 (567)
Q Consensus       243 ~~ip~~~~l~~~v~l~~~~~  262 (567)
                      ..|||+++|+|+|+|+++..
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGG
T ss_pred             CCcCcCCeEEEEEEEEEecc
Confidence            47999999999999998864

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.67  E-value=6.5e-16  Score=144.78  Aligned_cols=105  Identities=30%  Similarity=0.536  Sum_probs=94.8

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      .+.++..+++++|.| ..|..++.|+|||.+++.||++|+++..  ++.|++|.+  +.+|+||+.+|..|++||++.|.
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEE
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccc--cCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEE
Confidence            356799999999999 5899999999999999999999998753  468999999  47999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      ||+.++||..+..    .|||+++++|+|+|+++
T Consensus       194 IP~~laYG~~g~~----~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          194 IPPELAYGKAGVP----GIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             ECGGGTTTTTCBT----TBCTTCCEEEEEEEEEE
T ss_pred             ECchhhcCcCCCC----CCCCCCEEEEEEEEEEe
Confidence            9999999988753    39999999999999876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.66  E-value=3.3e-16  Score=135.22  Aligned_cols=115  Identities=24%  Similarity=0.355  Sum_probs=100.7

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      ..+.|..+++.|+.+|+.|+|++|+..|++|+++.|.+.               .+|+|+|.||+++|+|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------------~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------------TFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            456788999999999999999999999999999877543               35999999999999999999999999


Q ss_pred             hccCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          475 LDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       475 l~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      |+++|++       .++|+++|.++..+++|++|+.+|++++++.|+. +....+..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP-ELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH-HHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH-HHHHHHHHh
Confidence            9998876       4789999999999999999999999999999864 444444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.4e-16  Score=132.62  Aligned_cols=116  Identities=24%  Similarity=0.318  Sum_probs=108.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..++..|+.+++.|+|++|+..|++++...+.+.               .+++++|.||.++++|++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            577899999999999999999999999999877543               45999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTLKEK  528 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~  528 (567)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++      |++..+...+..+..+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999      9999998888887654

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.64  E-value=1.9e-16  Score=140.40  Aligned_cols=128  Identities=20%  Similarity=0.259  Sum_probs=95.7

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008400           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (567)
Q Consensus        53 ~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~  132 (567)
                      ++.||.|++||+++ .||++|++++     +.|.+|.++++|||++||.||++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence            67899999999999 8999999985     89999999999999999999999999999999999999876        5


Q ss_pred             cEEEEEEEEEEeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeeccce
Q 008400          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKADGV  195 (567)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~  195 (567)
                      .+++.|.+..|...... ..+..+..-...|.   +...-..++.|++++||++++.++.++-+-+
T Consensus        69 ~lv~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~  133 (158)
T 3cgm_A           69 EGVQVVPLSAFPEDAEV-VPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVV  133 (158)
T ss_dssp             GGEEEEEGGGSCTTSCC-CTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEE
T ss_pred             ceEEEEEHHHCCCCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEE
Confidence            67777777666421111 11111111111111   1122234589999999999999887765433

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.64  E-value=2.3e-16  Score=131.96  Aligned_cols=85  Identities=22%  Similarity=0.438  Sum_probs=76.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (567)
                      ..++.||.|.|+|++++ ||++|++++  ++|+.|.+|.+++||||+++|.||++|++++|.||++..||..+.     +
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~-----~   99 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----Q   99 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----G
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC-----C
Confidence            57899999999999998 999999995  489999999999999999999999999999999984444998763     6


Q ss_pred             CCcEEEEEEEEEE
Q 008400          131 NATLQFDVELLSW  143 (567)
Q Consensus       131 ~~~l~~~vel~~~  143 (567)
                      +++++|+|+|+++
T Consensus       100 g~~l~F~V~l~~V  112 (113)
T 1hxv_A          100 SKPVTFEVVLKAI  112 (113)
T ss_dssp             SCCCEEEEEECCB
T ss_pred             CCEEEEEEEEEEE
Confidence            7999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=6.4e-15  Score=132.70  Aligned_cols=121  Identities=23%  Similarity=0.222  Sum_probs=107.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|++++.+.+.+.               .+++++|.||+++++|++|+.+|+++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------------IYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999877543               3589999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD--VKLEYKTLKEKMKEY  532 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~~~~~~  532 (567)
                      ++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..  +...+..++.++.+.
T Consensus        74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999976  445555555544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.59  E-value=8.7e-15  Score=130.20  Aligned_cols=105  Identities=12%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..+++.|+|++|+..|++++.+.|.+..               +|+++|.||.++|+|++|+..|+++++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------------~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------------YIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            45678899999999999999999999999999886553               389999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ++|+++.+|+++|.||..+|++++|+.+|++|+++.|++.
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.56  E-value=2.4e-14  Score=125.77  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=108.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..+++.|+|++|+..|++++...|.+.               .+++++|.||.++|+|++|+..|++++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---------------RYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3456778999999999999999999999999877544               3488999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      ++|+++.+++++|.+|..+|++++|+.+|+++++++|++........++...+...+
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998877666666666555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.56  E-value=2e-14  Score=127.53  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=104.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|.+|+..|++++...+.+.               .+++++|.|+..+|+|++|+..|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---------------RFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3466788899999999999999999999999877644               3388999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.......++...+.
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998766555555544443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=2.8e-14  Score=126.78  Aligned_cols=115  Identities=13%  Similarity=0.034  Sum_probs=91.2

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      +.+..+...|..+++.|+|++|+..|++++++.|.+.               .+|+++|.||.++|++++|+.+++++++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---------------KAHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            3455667788888888888888888888888876543               3478888888888888888888888888


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFD-IKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~-~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      ++|+++.+++++|.+|..++++++|... +++|++++|+|..+...+.++.
T Consensus        94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            8888888888888888888888776654 5888888888887766665553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=3.1e-14  Score=123.44  Aligned_cols=120  Identities=29%  Similarity=0.391  Sum_probs=108.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|.+++...+.+.               .+++++|.|+..+++|++|+.+++++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999876533               358999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-----NRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-----n~~~~~~l~~~~~~~~~~~  533 (567)
                      |+++.+++++|.+|..+|++++|+..|+++++++|+     +..+...+..+..+.....
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998     7788888887766554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.52  E-value=2.6e-14  Score=126.96  Aligned_cols=127  Identities=15%  Similarity=0.107  Sum_probs=106.1

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka  484 (567)
                      .|..+..+|++++|+..|.+++...+.....               ++++|.+|+++|+|++|+.+++++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            5777888999999999999999876654433               8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |+++|.+|..+|++++|+.+|+++++++|++..+...+..+....++..++....+++....
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888888766655544333344555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.49  E-value=1e-12  Score=117.36  Aligned_cols=124  Identities=25%  Similarity=0.399  Sum_probs=111.7

Q ss_pred             hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHH
Q 008400          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (567)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~  471 (567)
                      .......+..+...|..++..|+|.+|+..|.+++...+.+               ..+++++|.|+..+++|++|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35677889999999999999999999999999999986643               235889999999999999999999


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      .+++.++|.++.+++++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  129 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  129 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888877777644443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=4.4e-13  Score=125.85  Aligned_cols=131  Identities=14%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChH-HHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e-~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      +..+..+|..++..|+|++|+..|++++...|.+...... ...........+++++|.+|.++|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999987653211000 000001122233445999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+....
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888888765433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=4.4e-13  Score=111.97  Aligned_cols=114  Identities=23%  Similarity=0.265  Sum_probs=104.4

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|++++...+.+.               .++.++|.|+..++++++|+..+++++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            467788999999999999999999999998866432               35889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      +|++..+++++|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999988887777664

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.45  E-value=2.2e-13  Score=113.88  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=72.5

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCC
Q 008400          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEG  243 (567)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip-~~~~~g~~~~~~~~~~~  243 (567)
                      ..+..||.|+++|++++ +|++|+++  +|+.|.+|.++++|||+++|.+|++|+++.|.|| |+. ||..+.       
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~-------   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL-------   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-------
Confidence            36788999999999999 99999987  7999999999999999999999999999999996 553 886543       


Q ss_pred             CCCCCCeEEEEEEeecc
Q 008400          244 AVPPNATLQIALELVSW  260 (567)
Q Consensus       244 ~ip~~~~l~~~v~l~~~  260 (567)
                         ++++++|+|+|+++
T Consensus        99 ---~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 ---QSKPVTFEVVLKAI  112 (113)
T ss_dssp             ---GSCCCEEEEEECCB
T ss_pred             ---CCCEEEEEEEEEEE
Confidence               57899999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.45  E-value=4.9e-13  Score=148.44  Aligned_cols=137  Identities=15%  Similarity=0.104  Sum_probs=86.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHH------HHHHHHHHHHhhHHHH
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKK------QAKALKVACNLNNAAC  457 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~------~~~~~~~~~~~nla~~  457 (567)
                      +.+..+.+.|+.+.+.|+|++|+..|++|+++.+.....             .++...      +.......+|+|+|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            457778888888888888888888888888876653211             000000      0111123456666666


Q ss_pred             HHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      |.++|++++|+.+|++|++++|++..+|+++|.+|..+|++++|+.+|++|++++|++..+...+..+...+.+..
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666655554444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.44  E-value=1e-12  Score=112.35  Aligned_cols=118  Identities=11%  Similarity=0.085  Sum_probs=103.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|.+++...+.+..            ...+++++|.|+.++|+|++|+..+++++..+
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~   69 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRY   69 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            345678899999999999999999999998775431            22458899999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          479 SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       479 p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      |++   +.+++++|.+|..+|++++|+..|+++++..|++..+...+..+...
T Consensus        70 p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           70 PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999   89999999999999999999999999999999998777666665443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.43  E-value=1.6e-12  Score=110.59  Aligned_cols=122  Identities=30%  Similarity=0.320  Sum_probs=108.7

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~  472 (567)
                      +.....+..+...|..++..|+|++|+..|.+++...+..               ..++.++|.++..++++++|+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHHH
Confidence            3445678889999999999999999999999999886543               2348899999999999999999999


Q ss_pred             HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +++..+|++..+++++|.++..+|++++|+..|+++++++|++..+...+..+...+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988887777765544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=8.3e-13  Score=115.49  Aligned_cols=117  Identities=32%  Similarity=0.557  Sum_probs=105.3

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|.+|+..|++++...+..            .....+++++|.||.++++|++|+..|++++.+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            35678899999999999999999999999876531            224567899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      +|+++.+++++|.+|..++++++|+.+|+++++++|++..+...+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988887777664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.42  E-value=3.5e-13  Score=114.97  Aligned_cols=102  Identities=13%  Similarity=0.051  Sum_probs=89.7

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+...|..+++.|+|++|+..|++++...|.+..               +++++|.|+..+|++++|+..++++++++|
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P   82 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------------AWRSLGLTQAENEKDGLAIIALNHARMLDP   82 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34678899999999999999999999998876543               488999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      +++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999999999999999999874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=8.6e-13  Score=112.98  Aligned_cols=115  Identities=30%  Similarity=0.389  Sum_probs=104.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|++++...+.+               ..+++++|.++..++++++|+..+++++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            36778899999999999999999999999876543               245889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      +|.+..+++++|.++..+|++++|+..|+++++++|.+..+...+..+..
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887777776644

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.40  E-value=1.7e-12  Score=110.59  Aligned_cols=118  Identities=27%  Similarity=0.352  Sum_probs=105.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|.+++...+.+               ..+++++|.++..+++|++|+.++++++.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            46778899999999999999999999999886543               245889999999999999999999999999


Q ss_pred             CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          478 DSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       478 ~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      .|.+       ..+++++|.+|..+|++++|+.+|++++++.| +..+...+..+...+++
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            8877       99999999999999999999999999999999 67788888777666554

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.39  E-value=7e-12  Score=111.66  Aligned_cols=81  Identities=20%  Similarity=0.356  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG  243 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~  243 (567)
                      .++.|+.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.         
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~---------   94 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP---------   94 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC---------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence            4678999999999999999999987    799999999999999999999999999999999999999964         


Q ss_pred             CCCCCCeEEEEEEeeccc
Q 008400          244 AVPPNATLQIALELVSWK  261 (567)
Q Consensus       244 ~ip~~~~l~~~v~l~~~~  261 (567)
                          +..+++.|....|.
T Consensus        95 ----~~~lv~~vp~~~f~  108 (169)
T 4dt4_A           95 ----SPDLIQYFSRREFM  108 (169)
T ss_dssp             ----CGGGEEEEEGGGGT
T ss_pred             ----ChHHEEEeCHHHCC
Confidence                45678888888875

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.39  E-value=1.2e-12  Score=115.34  Aligned_cols=81  Identities=19%  Similarity=0.301  Sum_probs=73.6

Q ss_pred             cCCCCCCeEEEEEEEEeC-CCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008400          167 ENPKDLDEVLVNYEARLE-DGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE  242 (567)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~  242 (567)
                      ..++.|+.|+++|++++. +|++|+++   +|+.|.+|.+++++||+++|.+|++|+++++.|||+.+||+.        
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~--------   76 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVY--------   76 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSS--------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCC--------
Confidence            456789999999999998 99999987   699999999999999999999999999999999999999964        


Q ss_pred             CCCCCCCeEEEEEEeecc
Q 008400          243 GAVPPNATLQIALELVSW  260 (567)
Q Consensus       243 ~~ip~~~~l~~~v~l~~~  260 (567)
                           +..+++.+.+..|
T Consensus        77 -----~~~~v~~v~~~~f   89 (151)
T 2kr7_A           77 -----ESSYLQEVPRDQF   89 (151)
T ss_dssp             -----CSCEEEEEEGGGG
T ss_pred             -----CcceEEEEcHHHc
Confidence                 3458888888888

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.38  E-value=1.3e-12  Score=123.46  Aligned_cols=94  Identities=17%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             HHhhHHHHHHhc-----------cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400          450 CNLNNAACKLKL-----------KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       450 ~~~nla~~~~k~-----------~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~  518 (567)
                      +++++|.++.++           |++++|+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++ ++..+
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~  153 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence            366666666666           666667766666666666666666666766666777777777777766666 66666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          519 KLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       519 ~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      ...+..+....++..+. ...|++...
T Consensus       154 ~~~la~~~~~~g~~~~A-~~~~~~al~  179 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEA-LAQYAKALE  179 (217)
T ss_dssp             HHHHHHHHHHHTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            66666665555544433 334555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.38  E-value=1.4e-12  Score=144.71  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=86.0

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHH------HHHHHHHHHHhhHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKK------QAKALKVACNLNNAACKLK  460 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~------~~~~~~~~~~~nla~~~~k  460 (567)
                      ..+.+.|+.+++.|+|++|+..|++|+++.+.....             .++...      +.+.....+|+|+|.+|.+
T Consensus        44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445556666666666666666666666654432210             000000      1111234579999999999


Q ss_pred             ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +|++++|+.+|++||+++|+++.+++++|.+|..++++++|++.|++++++.|+.
T Consensus       124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            9999999999999999999999999999999999999999999999999987665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=3.7e-12  Score=120.78  Aligned_cols=104  Identities=21%  Similarity=0.331  Sum_probs=96.2

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh-ccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE-YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      ..+...|..++..|+|++|+..|++++...+ .+.               .+++++|.|+.++++|++|+.+++++++++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---------------VTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            5688999999999999999999999999876 322               347789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~  518 (567)
                      |++..+++++|.+|..+|++++|+..|+++++++|++...
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            9999999999999999999999999999999999999844

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.37  E-value=7.9e-12  Score=110.28  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=69.8

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~  231 (567)
                      .+.||.|+++|++++ +|++|+++                 +|+.|.+|.+++++||+++|.+|++|+++++.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            467899999999999 99999986                 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008400          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (567)
Q Consensus       232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (567)
                      |+.+.             .++..+....|.
T Consensus        81 G~~~~-------------~~V~~v~~~~f~   97 (157)
T 3pr9_A           81 GKRDP-------------SKIKLIPLSEFT   97 (157)
T ss_dssp             CCCCG-------------GGEEEEEHHHHH
T ss_pred             CCCCh-------------HhEEEcCHHHCC
Confidence            96543             467777776663

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.37  E-value=7.7e-13  Score=116.62  Aligned_cols=104  Identities=18%  Similarity=0.220  Sum_probs=91.0

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH----------HHHHHHHHHHhccC
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----------KQAEKLCTKVLDLD  478 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~----------~~Ai~~~~~al~~~  478 (567)
                      .-+.+.|++|+..|++|+.+.|.+..               +++|+|.|+..++++          ++|+..|++||+++
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~ae---------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld   76 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDAD---------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence            34567899999999999999887554               389999999999875          59999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      |++..+|+++|.+|..+|           +|++|+.+|++|++++|++...+..+..+.+
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            999999999999999885           8999999999999999999877666665533

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.36  E-value=2.6e-12  Score=126.66  Aligned_cols=102  Identities=31%  Similarity=0.446  Sum_probs=95.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..++..|+.+++.|+|++|+..|++|+...+.+.               .+++|+|.||.++|+|++|+.+|+++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999877543               348999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      |++.++++++|.+|..+|++++|+..|+++++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999976

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.36  E-value=2e-11  Score=109.39  Aligned_cols=80  Identities=20%  Similarity=0.287  Sum_probs=71.8

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      ++.||.|+++|++++.+|++|+++   +|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||+.+          
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~----------   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD----------   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC----------
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC----------
Confidence            567899999999999999999987   6999999999999999999999999999999999999999653          


Q ss_pred             CCCCeEEEEEEeeccc
Q 008400          246 PPNATLQIALELVSWK  261 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~  261 (567)
                         ..+++.|.+..|.
T Consensus        73 ---~~~v~~v~~~~f~   85 (171)
T 2k8i_A           73 ---ENLVQRVPKDVFM   85 (171)
T ss_dssp             ---TTSEEEEEGGGGT
T ss_pred             ---hhhEEEeeHHHCC
Confidence               3467888887774

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.34  E-value=1.7e-12  Score=118.68  Aligned_cols=80  Identities=20%  Similarity=0.287  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      ++.++.|+++|++++.+|++|+++   +|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||+.+          
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~----------   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD----------   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC----------
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC----------
Confidence            567899999999999999999987   6999999999999999999999999999999999999999643          


Q ss_pred             CCCCeEEEEEEeeccc
Q 008400          246 PPNATLQIALELVSWK  261 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~  261 (567)
                         ..+++.|.+..|.
T Consensus        73 ---~~lV~~vp~~~f~   85 (196)
T 2kfw_A           73 ---ENLVQRVPKDVFM   85 (196)
T ss_dssp             ---TTTCEEECGGGCC
T ss_pred             ---hhhEEEEEHHHCC
Confidence               3467777777764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.34  E-value=3.2e-12  Score=135.83  Aligned_cols=120  Identities=26%  Similarity=0.407  Sum_probs=109.1

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      .+.+..+...|+.+++.|+|++|+..|++|++..+..               ..+++|+|.||.++++|++|+.++++|+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3568889999999999999999999999999986654               3458999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +++|+++.+++++|.+|..+|++++|++.|++|++++|++..+...+..+....+
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  122 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  122 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888888887744443

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.32  E-value=2.7e-11  Score=113.30  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~  231 (567)
                      .+.||.|++||++++ +|++|+++                 +|+.|.+|.+++++||+++|.+|++|+++++.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            467899999999999 99999986                 389999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008400          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (567)
Q Consensus       232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (567)
                      |+.+.             .++..+....|.
T Consensus        81 Ge~~~-------------~lv~~vp~~~f~   97 (231)
T 3prb_A           81 GKRDP-------------SKIKLIPLSEFT   97 (231)
T ss_dssp             CCCCG-------------GGEEEEETHHHH
T ss_pred             CCCCh-------------HHEEecCHHHCC
Confidence            96543             466777766663

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.32  E-value=4.7e-12  Score=130.29  Aligned_cols=131  Identities=15%  Similarity=0.034  Sum_probs=77.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC--------------ChHHHHHHH------HHHHHHHhhHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAK------ALKVACNLNNAAC  457 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------------~~e~~~~~~------~~~~~~~~nla~~  457 (567)
                      .+..+...|..+++.|+|++|+..|++||.+.|.+...              .++.....+      .-...+|+++|.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34455566666666666666666666666665543211              000000000      0012346666666


Q ss_pred             HHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      +.++|++++|+.+|+++|+++|++..+|+++|.++..+|++++|+.+|+++++++|+|..++..+..+...
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666655444

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.32  E-value=4.2e-12  Score=111.84  Aligned_cols=80  Identities=21%  Similarity=0.388  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~  231 (567)
                      ++.||.|+++|++++.+|++|+++                 +|+.|.+|.+++++||+++|.+|++|+++++.|||+.||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            567899999999999999999986                 488999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008400          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (567)
Q Consensus       232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (567)
                      |+.+             ..+++.|.+..|.
T Consensus        82 G~~~-------------~~~v~~v~~~~f~   98 (151)
T 1ix5_A           82 GNRN-------------EMLIQKIPRDAFK   98 (151)
T ss_dssp             CSCC-------------STTBCCEETHHHH
T ss_pred             CCCC-------------ccEEEEEEHHHcC
Confidence            9654             3467777777774

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.32  E-value=5.8e-12  Score=129.64  Aligned_cols=132  Identities=11%  Similarity=-0.028  Sum_probs=101.9

Q ss_pred             HhhhhhhhhHHHhcCc-HHHHHHHHHHHHHhhhccCCC-------------ChHHHHH------HHHHHHHHHhhHHHHH
Q 008400          399 AGKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAACK  458 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~-~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~------~~~~~~~~~~nla~~~  458 (567)
                      +..+..+|..++..|+ |++|+..|++|+.+.+.+...             .++....      ...-...+|+|+|.++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            4556677777777775 788888887777776543210             0111111      1112345799999999


Q ss_pred             HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLA-----EFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A-----~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      .++|+|++|+.+|+++|+++|++..+|+++|.+|.. .+.+++|     +.+|++|++++|++..++..++.+.....
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999 5554888     59999999999999999999888877644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.31  E-value=2e-12  Score=109.27  Aligned_cols=98  Identities=16%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .|+|++|+..|++|+.....            ......+++++|.||.++|+|++|+..++++++++|+++.+++++|.+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   70 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQ------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV   70 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCC------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            68899999999999986210            012345689999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      |..+|++++|+..|++++++.|++..+...
T Consensus        71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           71 LYNLGRYEQGVELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            999999999999999999999999776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.31  E-value=1.3e-11  Score=116.56  Aligned_cols=135  Identities=19%  Similarity=0.084  Sum_probs=107.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCC---------h-----------HHHHH----------HHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------D-----------EEKKQ----------AKALKV  448 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~-----------e~~~~----------~~~~~~  448 (567)
                      +..+...|..++..|++++|+..|++++...|.+....         .           ....+          ..+...
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            45677899999999999999999999999877543110         0           00000          011124


Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      .+++++|.++..+|++++|+..++++++++ +++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~  197 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL  197 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            578999999999999999999999999999 9999999999999999999999999999999999999888888877666


Q ss_pred             HHHHHH
Q 008400          529 MKEYNK  534 (567)
Q Consensus       529 ~~~~~~  534 (567)
                      .++..+
T Consensus       198 ~g~~~~  203 (217)
T 2pl2_A          198 KGKAEE  203 (217)
T ss_dssp             ------
T ss_pred             ccCHHH
Confidence            655543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=1.9e-11  Score=111.58  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHH------HHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~------~~~~~~~nla~~~~  459 (567)
                      +..+.+.|+.++..|+|++|+..|++|++..|.+...             .++.......      ....++.++|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5567889999999999999999999999987754321             0011111111      12446788899999


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      ..++++.|+..+.+++.++|++..+++.+|.+|..+|++++|+..|+++++++|.+..+...++.+...+++..++ ...
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~  163 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA-VKY  163 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999999999988888888777766544 346


Q ss_pred             HHHhhHh
Q 008400          540 YGNMFAK  546 (567)
Q Consensus       540 ~~~~f~~  546 (567)
                      |++.+..
T Consensus       164 ~~~al~~  170 (184)
T 3vtx_A          164 FKKALEK  170 (184)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            6666654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.30  E-value=3.6e-11  Score=101.13  Aligned_cols=114  Identities=32%  Similarity=0.416  Sum_probs=102.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|.+++...+..               ..+++++|.++.+.+++++|+..+++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            4567888999999999999999999999876532               2347899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      |.+..+++.+|.+|..++++++|+..|+++++++|++..+...+..+..
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888777766643

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.28  E-value=3.5e-12  Score=132.34  Aligned_cols=99  Identities=25%  Similarity=0.441  Sum_probs=87.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (567)
                      ..+..||.|++||+++. ||+.|++++  +.|+.|.+|.|++||||+++|.||++|++++|.||++.+||..+.     +
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a  227 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K  227 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence            56889999999999994 999999987  479999999999999999999999999999999999999998764     6


Q ss_pred             CCcEEEEEEEEEEeeccccccccceee
Q 008400          131 NATLQFDVELLSWTSVKDICKDGGIIK  157 (567)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~~  157 (567)
                      +.+++|+|+|+++.......-+..+.+
T Consensus       228 g~~~~F~V~v~~v~~~~lpeldDEfak  254 (432)
T 1w26_A          228 GKAAKFAINLKKVEERELPELTAEFIK  254 (432)
T ss_dssp             SCEEEEEEECCEECCEECCCCSHHHHT
T ss_pred             CceEEEEEEEEEEeccCCCCcchHHHH
Confidence            799999999999987555555555554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.27  E-value=3.8e-11  Score=102.99  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      .....+.|+|.+|++.|+|++|+..|+++|+++|.++.+|+++|.+|..+|++++|+.+|++|++++|++..+...++.+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            34556889999999999999999999999999999999999999999999999999999999999999999999889888


Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhh
Q 008400          526 KEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       526 ~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      ...+++..++ ...|++.+..-+
T Consensus        91 ~~~~~~~~~A-~~~~~~al~l~P  112 (126)
T 4gco_A           91 LVAMREWSKA-QRAYEDALQVDP  112 (126)
T ss_dssp             HHHTTCHHHH-HHHHHHHHHHCT
T ss_pred             HHHCCCHHHH-HHHHHHHHHHCc
Confidence            8877766644 346666665433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.27  E-value=1.5e-11  Score=101.59  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|.+|+..|++++...+...               .++.++|.++..+++|++|+..++++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------------KYWLMKGKALYNLERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34577889999999999999999999999866432               348899999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC
Q 008400          479 SR--NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       479 p~--~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~n  515 (567)
                      |.  +..+++++|.++..+ |++++|++++++++...|.+
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99  999999999999999 99999999999999999976

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.26  E-value=8.1e-11  Score=104.10  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPN  248 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip~~  248 (567)
                      ++.||.|+++|+++ .+|++|+++. +.|.+|.++++|||+++|.+|++|+++++.|||+.+||+.             +
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------------~   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------------D   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------------C
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------------C
Confidence            45789999999999 8999999888 9999999999999999999999999999999999999954             4


Q ss_pred             CeEEEEEEeeccc
Q 008400          249 ATLQIALELVSWK  261 (567)
Q Consensus       249 ~~l~~~v~l~~~~  261 (567)
                      ..+++.|.+..|.
T Consensus        68 ~~lv~~v~~~~f~   80 (158)
T 3cgm_A           68 PEGVQVVPLSAFP   80 (158)
T ss_dssp             GGGEEEEEGGGSC
T ss_pred             cceEEEEEHHHCC
Confidence            5688999998884

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.26  E-value=5e-11  Score=108.76  Aligned_cols=118  Identities=15%  Similarity=0.058  Sum_probs=92.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC------------C-hHHHH------HHHHHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------G-DEEKK------QAKALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~e~~~------~~~~~~~~~~~nla~~~~  459 (567)
                      +..+...|..+++.|++++|+..|.+++...+.....            . +....      ........++.++|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4456777888888888888888888887765542210            0 00000      011112456889999999


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ++|+|++|+..++++++++|.++.+++++|.+|..+|++++|+.+|++|++++|++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            999999999999999999999999999999999999999999999999999999873

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.26  E-value=3.4e-11  Score=112.87  Aligned_cols=106  Identities=17%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      +.|..+++.|+|++|+..|+++++..|.+.               .+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNNV---------------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            389999999999999999999999987644               34899999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhc-----------------------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          484 ALYRRAQAYIQM-----------------------------------ADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       484 a~~~~a~a~~~l-----------------------------------~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      +++++|.+|+..                                   ++|++|+.+|++|++++|++ .+...+.++
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            888888776443                                   45777888888888888864 344444444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=4.3e-11  Score=108.62  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=99.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHH-HHhccCH--HHHHHHHHHHh
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-KLKLKDY--KQAEKLCTKVL  475 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~-~~k~~~~--~~Ai~~~~~al  475 (567)
                      +..+...|..++..|+|++|+..|.+++...+.+.               .++.++|.+ +...+++  ++|+..+++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45678899999999999999999999999877543               348899999 8899999  99999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      +.+|++..+++++|.+|..+|++++|+..|+++++++|++......+..+
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999986555554444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.24  E-value=5.2e-11  Score=112.78  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|+|++|+..|.+++...+..               ..++.++|.+|.++|++++|+..++++++++|+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            45568999999999999999999999876642               345889999999999999999999999999999


Q ss_pred             CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 008400          481 NV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       481 ~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--n~~~~~~l~~~~~~~~~~  532 (567)
                      +.       .+|+++|.++..+|++++|+..|+++++++|+  +..+...++.+.......
T Consensus       109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            98       77999999999999999999999999999999  877777777775544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.24  E-value=3.1e-12  Score=113.59  Aligned_cols=99  Identities=12%  Similarity=0.006  Sum_probs=88.6

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..+++++|.+++++|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++..+...++.+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhHhh
Q 008400          528 KMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~~  547 (567)
                      .+++..++. ..|.+.....
T Consensus       116 ~lg~~~eA~-~~~~~al~l~  134 (151)
T 3gyz_A          116 RLKAPLKAK-ECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHH-HHHHHHHHHC
T ss_pred             HcCCHHHHH-HHHHHHHHhC
Confidence            877766544 4666666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.24  E-value=4.3e-11  Score=111.78  Aligned_cols=131  Identities=21%  Similarity=0.170  Sum_probs=109.7

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|.+++..                  ...+++++|.+|.++|+|++|+.+|++++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34667889999999999999999999998521                  123689999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKEAKFY  540 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~----------------~~~~~l~~~~~~~~~~~~~e~~~~  540 (567)
                      ++|+++.+++++|.+|..+|++++|+.+|++++++.|++.                .+...+..+...+++..++ ...|
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~  144 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA-EEQL  144 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH-HHHH
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH-HHHH
Confidence            9999999999999999999999999999999999999876                7777777776666555433 3355


Q ss_pred             HHhhHh
Q 008400          541 GNMFAK  546 (567)
Q Consensus       541 ~~~f~~  546 (567)
                      .+....
T Consensus       145 ~~al~~  150 (213)
T 1hh8_A          145 ALATSM  150 (213)
T ss_dssp             HHHHTT
T ss_pred             HHHHHc
Confidence            555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.21  E-value=1.8e-10  Score=115.90  Aligned_cols=122  Identities=25%  Similarity=0.351  Sum_probs=108.7

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ......|..+++.|++++|+..|++++...+.+.           .....++.++|.|+.++|++++|+..++++++.+|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3455679999999999999999999999876422           23445688999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      +++.+++++|.+|..+|++++|+..|+++++++|++..++..+..+...+++.
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999887776654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.18  E-value=3.3e-10  Score=109.71  Aligned_cols=114  Identities=19%  Similarity=0.055  Sum_probs=102.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|++++...+...               .++.++|.+|..+|++++|+.+++++++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4567788999999999999999999999999866432               3488999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++|.+..+++++|.+|..+|++++|+..|+++++++|++......+..+
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999997655554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.1e-10  Score=111.72  Aligned_cols=117  Identities=18%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +......+..+.+.|++++|+..|.+++...+.               ...++.++|.++..+|++++|+..+++++..+
T Consensus       105 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  169 (258)
T 3uq3_A          105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPE---------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA  169 (258)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc---------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            333334445555555555555555555554332               12235555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      |.++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+...++
T Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555544544444443

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.17  E-value=1.1e-11  Score=126.85  Aligned_cols=101  Identities=20%  Similarity=0.428  Sum_probs=87.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (567)
                      ..+..||.|+|||+++ .||+.|+++.  +.|+.|.+|.|++||||+++|.||++|++++|.|+++..||..+.     +
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----a  230 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K  230 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----C
Confidence            4688999999999999 4999999884  479999999999999999999999999999999998888987664     6


Q ss_pred             CCcEEEEEEEEEEeeccccccccceeeee
Q 008400          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (567)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~~~i  159 (567)
                      |.+++|+|+|+++.......-+..+.+.+
T Consensus       231 Gk~~~F~V~v~~i~~~~lpeldDEfak~~  259 (392)
T 1t11_A          231 GKAAKFAIKVNKVEARELPELNDEFVARF  259 (392)
T ss_dssp             SCEEEECCCEEEEEEEECCCCSTGGGGGG
T ss_pred             CCeEEEEEEEEEEEcCCCCCcCHHHHHHh
Confidence            89999999999999866666666666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.16  E-value=2.9e-10  Score=96.64  Aligned_cols=129  Identities=27%  Similarity=0.385  Sum_probs=107.4

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|++++|+..|.+++...+..               ..++.++|.++...+++++|+..+++++..+|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            45678899999999999999999999875432               234788999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      +..+++.+|.++...|++++|+..++++++..|.+..+...+..+....++..+. ...|.++..
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~  131 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA-IEYYQKALE  131 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH-HHHHHHHHc
Confidence            9999999999999999999999999999999999987777777766555444432 334554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=4.3e-10  Score=106.56  Aligned_cols=111  Identities=13%  Similarity=0.128  Sum_probs=96.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|++++...|....            ...+++++|.||+++|+|++|+..++++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            456778899999999999999999999998775432            23458899999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          479 SRNVK---ALYRRAQAYIQ------------------MADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       479 p~~~k---a~~~~a~a~~~------------------l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      |++..   ++|++|.++..                  +|++++|+..|+++++..|++..+...
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a  135 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA  135 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            99865   89999999986                  579999999999999999999755443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.16  E-value=1.4e-10  Score=125.88  Aligned_cols=132  Identities=7%  Similarity=0.017  Sum_probs=114.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|++|++..+.+.               .+++++|.+|..+|++++|+.+++++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---------------EAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56688899999999999999999999999876533               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM---KEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~---~~~~~~e~~~~~~~f~~  546 (567)
                      |++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+   ++..+ ....|++.+..
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~-A~~~~~~al~~  157 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV-LSAQVRAAVAQ  157 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH-HHHHHHHHHhc
Confidence            999999999999999999999999999999999999998888888887766   44443 33455555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.15  E-value=4.5e-10  Score=108.76  Aligned_cols=139  Identities=15%  Similarity=0.211  Sum_probs=106.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh--------ccCHHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--------LKDYKQAEKL  470 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--------~~~~~~Ai~~  470 (567)
                      ...+...|..+++.|+|.+|+..|++++...|.+..            ...+++++|.|+++        ++++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            445677888888888888888888888887665432            23458899999999        9999999999


Q ss_pred             HHHHhccCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHH
Q 008400          471 CTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKMK  530 (567)
Q Consensus       471 ~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~n---~~~~~~l~~~~~~~~  530 (567)
                      +++++..+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++   ..+...+..+...+.
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            999999999986555                 999999999999999999999999999995   345666666655441


Q ss_pred             ---------HHHHHHHHHHHHhhHhhhh
Q 008400          531 ---------EYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       531 ---------~~~~~e~~~~~~~f~~~~~  549 (567)
                               ..-++....|+++....+.
T Consensus       200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          200 EQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccchhhcccchHHHHHHHHHHHHHHCCC
Confidence                     1222334566666655443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.15  E-value=1.3e-10  Score=112.65  Aligned_cols=110  Identities=18%  Similarity=0.219  Sum_probs=97.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+++.|+|++|+..|++++...|.+..            ...+++++|.||+++|+|++|+..+++++...
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            567889999999999999999999999998775431            24568999999999999999999999999998


Q ss_pred             CCC---HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400          479 SRN---VKALYRRAQAYIQ--------MADLDLAEFDIKKALEIDPDNRDVKL  520 (567)
Q Consensus       479 p~~---~ka~~~~a~a~~~--------l~~~~~A~~~~~~al~l~P~n~~~~~  520 (567)
                      |++   ..+++++|.++..        +|++++|+..|+++++.+|++..+..
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  135 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD  135 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH
Confidence            855   6899999999999        99999999999999999999865553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.14  E-value=6.7e-10  Score=100.16  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=109.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|++++|+..|.+++...+..               ..++.++|.++...+++++|+..+++++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            3456778888899999999999999999875532               2348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+....++..+ ....|.++...
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~  173 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE-ALPHFKKANEL  173 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Confidence            99999999999999999999999999999999999998888888877766655443 33455555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.14  E-value=1.8e-10  Score=122.32  Aligned_cols=121  Identities=16%  Similarity=0.031  Sum_probs=108.6

Q ss_pred             hhhhhhhhHHHhc---------CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--------c
Q 008400          400 GKKKEQGNTLFKA---------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------K  462 (567)
Q Consensus       400 ~~~~~~G~~~~~~---------g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--------~  462 (567)
                      ..+...|..++..         |+|++|+..|++|+++.+.+.               .+++++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHhhccccc
Confidence            4567788888888         999999999999999877543               3488999999999        9


Q ss_pred             CHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008400          463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (567)
Q Consensus       463 ~~~~Ai~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  535 (567)
                      +|++|+..|+++++++|   .++.+|+++|.+|..+|+|++|+.+|++|++++|++..++..+..+...+++..+.
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999999999999999999999999998888888887777665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.14  E-value=1.6e-10  Score=107.82  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=94.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|.+++...+...               .+++++|.+|.++|++++|+.++++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            35678999999999999999999999999866432               358999999999999999999999999988


Q ss_pred             CCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          479 SRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       479 p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      |.+.                .+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            8876                9999999999999999999999999999999873

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.14  E-value=3.6e-11  Score=133.50  Aligned_cols=126  Identities=14%  Similarity=0.089  Sum_probs=74.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHH------HHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~------~~~~~~~nla~~~~  459 (567)
                      +..+...|..++..|+|++|+..|+++++..+.+...             .++.....+.      ....+++|+|.||.
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4455666666666666666666666666665543211             0000000000      01233666677777


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++|+|++ +.+|++|++++|++..+++++|.+|..+|++++|+.+|++|++++|++..++..+..+
T Consensus       513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            7777766 7777777777777777777777777777777777777777777777766555555444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.12  E-value=2.7e-10  Score=120.91  Aligned_cols=131  Identities=15%  Similarity=-0.008  Sum_probs=113.9

Q ss_pred             HhhhhhhhhHHHhcCcH-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      +..+...|..++..|+| ++|+..|++|++..+...               .+++++|.||.++|++++|+.+|++++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV---------------EAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56778999999999999 999999999999876543               34899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQM---------ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM--------KEYNKKEAKFY  540 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l---------~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~--------~~~~~~e~~~~  540 (567)
                      +|+ ..+++++|.+|..+         |++++|+..|++|++++|++..++..+..+...+        ++..++ ...|
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A-~~~~  244 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA-LSAY  244 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH-HHHH
Confidence            999 79999999999999         9999999999999999999999998888887766        555443 3455


Q ss_pred             HHhhHh
Q 008400          541 GNMFAK  546 (567)
Q Consensus       541 ~~~f~~  546 (567)
                      .+....
T Consensus       245 ~~al~~  250 (474)
T 4abn_A          245 AQAEKV  250 (474)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.11  E-value=4.9e-10  Score=108.54  Aligned_cols=131  Identities=14%  Similarity=0.053  Sum_probs=87.5

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|+|++|+..|.+++. .+.+..           ....++.++|.++..+|++++|+.+++++++++|.
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-----------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            334445555555555555555555554 221111           12344778888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK-TLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~-~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      +..+++++|.+|..+|++++|+..|+++++++|.+..+...+. .+....  .-++..+.|.++..
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~  170 (272)
T 3u4t_A          107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--EYVKADSSFVKVLE  170 (272)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888877777766 443332  22223345555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.11  E-value=7.3e-11  Score=104.28  Aligned_cols=100  Identities=12%  Similarity=0.012  Sum_probs=87.1

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..+++++|.+++..|+|++|+..+++++.++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...++.+..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999998888888877


Q ss_pred             HHHHHHHHHHHHHHHhhHhhh
Q 008400          528 KMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      .+++..++. ..|.+......
T Consensus       101 ~~g~~~~A~-~~~~~al~~~p  120 (148)
T 2vgx_A          101 QXGELAEAE-SGLFLAQELIA  120 (148)
T ss_dssp             HTTCHHHHH-HHHHHHHHHHT
T ss_pred             HcCCHHHHH-HHHHHHHHHCc
Confidence            776665443 45666655433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.9e-11  Score=101.30  Aligned_cols=93  Identities=29%  Similarity=0.419  Sum_probs=63.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|++|+...+.+.               .+++|+|.|+.++|+|++|+.+|+++++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45566677777777777777777777776655432               236677777777777777777777777777


Q ss_pred             CCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008400          479 SRN------VKALYRRAQAYIQMADLDLAEFDIK  506 (567)
Q Consensus       479 p~~------~ka~~~~a~a~~~l~~~~~A~~~~~  506 (567)
                      |++      .++++++|.++..+|+++.|+..++
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            776      6777777777777776666655544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.10  E-value=6.2e-10  Score=106.43  Aligned_cols=123  Identities=12%  Similarity=0.115  Sum_probs=105.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|++++|+..|++++.+.+.                       +.++.+++++++|+..+++++..+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------~~~~~~~~~~~~a~~~~~~~~~~~  135 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------------ADILTKLRNAEKELKKAEAEAYVN  135 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------------hHHHHHHhHHHHHHHHHHHHHHcC
Confidence            677889999999999999999999999986542                       457888899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |.+..+++++|.++..+|++++|+..|+++++++|.+..+...+..+....++..+.. ..|.+...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~  201 (258)
T 3uq3_A          136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI-ADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Confidence            9999999999999999999999999999999999999988888888776666554332 34444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.10  E-value=7.5e-11  Score=106.98  Aligned_cols=133  Identities=11%  Similarity=0.093  Sum_probs=108.1

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      .++...++.++..|+|++|+..|.+++...+.+.               .+++++|.+|..+++|++|+..+.+++.++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   75 (177)
T 2e2e_A           11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWQNDYSNSLLAYRQALQLRG   75 (177)
T ss_dssp             CCSSTTTCCCC-----CCCCHHHHHHHHHCCSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhhhhhccCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            4556667778899999999999999999876433               3488999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          480 RNVKALYRRAQA-YIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       480 ~~~ka~~~~a~a-~~~l~~~--~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      +++.+++++|.+ +...|++  ++|+..|+++++++|++..+...+..+....++..++ ...|.+.+....
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p  146 (177)
T 2e2e_A           76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA-IELWQKVMDLNS  146 (177)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH-HHHHHHHHhhCC
Confidence            999999999999 8899999  9999999999999999998888888887766655543 345666665443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.09  E-value=1.2e-10  Score=129.31  Aligned_cols=87  Identities=14%  Similarity=0.025  Sum_probs=77.6

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      ...+++++|.+|+++|+|++|+.+|++|++++|++..+++++|.+|..+|+|++ +.+|++|++++|++..+...++.+.
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999 9999999999999988888888877


Q ss_pred             HHHHHHHH
Q 008400          527 EKMKEYNK  534 (567)
Q Consensus       527 ~~~~~~~~  534 (567)
                      ..+++.++
T Consensus       545 ~~~g~~~~  552 (681)
T 2pzi_A          545 SAEGDRVG  552 (681)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCCHHH
Confidence            66655543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.09  E-value=5.9e-10  Score=93.35  Aligned_cols=94  Identities=13%  Similarity=0.054  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 008400          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA  496 (567)
Q Consensus       417 ~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~  496 (567)
                      .|+..|++++...+.+.               .+++++|.+|..+|+|++|+..|++++.++|.+..+++++|.+|..+|
T Consensus         3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999998776543               348899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 008400          497 DLDLAEFDIKKALEIDPDN--RDVKLEYKTL  525 (567)
Q Consensus       497 ~~~~A~~~~~~al~l~P~n--~~~~~~l~~~  525 (567)
                      ++++|+..|+++++++|.+  ......+...
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            9999999999999998853  3343444333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.09  E-value=1.5e-09  Score=113.26  Aligned_cols=121  Identities=25%  Similarity=0.355  Sum_probs=106.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ......|..+++.|+|++|+..|++++...+.+.           .....++.++|.++.++|++++|+..|++++.++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            3445669999999999999999999998766422           23345689999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      +++.+|+.+|.+|..+|++++|+.+|+++++++|++..+...+..+...++.
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999888887666544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.08  E-value=5.3e-10  Score=100.85  Aligned_cols=132  Identities=20%  Similarity=0.240  Sum_probs=111.3

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|++++|+..|++++...+..               ..++.++|.++...+++++|+..+++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            45677889999999999999999999998765532               235889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      +|.+..+++.+|.++...|++++|+..|+++++++|.+..+...+..+....++..+. ...|.++..
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A-~~~~~~~~~  138 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA-IDSFKIALG  138 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH-HHHHHHHHh
Confidence            9999999999999999999999999999999999999988887777776655544432 234444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=9e-10  Score=108.89  Aligned_cols=112  Identities=15%  Similarity=0.048  Sum_probs=95.6

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-cCHHHHHHHHHHHh
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL  475 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al  475 (567)
                      ..+..+.+.|+.+.+.|+|++|+..|++|+.+.+.....         .....++.|+|.+|..+ |++++|+.+|++|+
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            346778889999999999999999999999887654321         22355688999999996 99999999999999


Q ss_pred             ccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      ++.|.+      ..++.++|.+|..+|+|++|+..|++++++.|++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            998754      578999999999999999999999999999998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.07  E-value=4.5e-10  Score=113.89  Aligned_cols=120  Identities=13%  Similarity=0.108  Sum_probs=86.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+...|..++..|+|++|+..|++++...+...               .+++++|.++.++|++++|+..++++++++|
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3455667777777777777777777777654322               2467778888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHHHHH
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----------RDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n-----------~~~~~~l~~~~~~~~~~~~  534 (567)
                      .+..+++++|.+|..+|++++|+..|+++++++|++           ..+...+..+...+++..+
T Consensus       283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            778888888888888888888888888888877777           5666666666665554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.07  E-value=7.7e-10  Score=109.16  Aligned_cols=130  Identities=13%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH---------
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK---------  469 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~---------  469 (567)
                      ...+...|..++..|++++|+..|++++...|.+..               +++++|.+++.+|++++|+.         
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE---------------IGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH---------------HHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh---------------HHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            456788999999999999999999999998876542               26666666666666666554         


Q ss_pred             -------------------------HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 008400          470 -------------------------LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEY  522 (567)
Q Consensus       470 -------------------------~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l  522 (567)
                                               .+++++..+|+++.+++++|.+|...|++++|+..|+++++++|++  ..++..+
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                     4555566788888899999999999999999999999999999988  6677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 008400          523 KTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       523 ~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      ..+...+++..+. ...|++.+
T Consensus       262 ~~~~~~~g~~~~a-~~~~r~al  282 (287)
T 3qou_A          262 QEILAALGTGDAL-ASXYRRQL  282 (287)
T ss_dssp             HHHHHHHCTTCHH-HHHHHHHH
T ss_pred             HHHHHHcCCCCcH-HHHHHHHH
Confidence            7776666544332 23444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.06  E-value=5e-10  Score=96.02  Aligned_cols=70  Identities=20%  Similarity=0.289  Sum_probs=66.1

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ...++.|+|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            3455789999999999999999999999999999999999999999999999999999999999998874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.06  E-value=1.2e-09  Score=103.51  Aligned_cols=129  Identities=17%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHHH------HHHHHHhhHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKLK  460 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~------~~~~~~~nla~~~~k  460 (567)
                      ..+...|..++..|++++|+..|.+++...+.....             .++-....+.      ....++.++|.++.+
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445566677777777777777777777664432110             0000000000      011234445555555


Q ss_pred             ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      +|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++.+|++..+...+..+...
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555554444444444333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.06  E-value=1.7e-09  Score=102.43  Aligned_cols=132  Identities=11%  Similarity=0.036  Sum_probs=103.3

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh------------------c
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK------------------L  461 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k------------------~  461 (567)
                      ..+...|..+++.|+|++|+..|+++++..|.+...            ..+++++|.|+.+                  +
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  109 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDP  109 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------CC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence            457788999999999999999999999988865531            2236677777765                  6


Q ss_pred             cCHHHHHHHHHHHhccCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008400          462 KDYKQAEKLCTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE  521 (567)
Q Consensus       462 ~~~~~Ai~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~  521 (567)
                      +++++|+..++++++..|++..+.                 +.+|.+|...|+|++|+..|+++++..|++.   .+...
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  189 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL  189 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence            799999999999999999987554                 6789999999999999999999999999986   34555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 008400          522 YKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       522 l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      +..+...+++..+.. +.++++.
T Consensus       190 l~~~~~~~g~~~~A~-~~~~~l~  211 (225)
T 2yhc_A          190 MENAYRQMQMNAQAE-KVAKIIA  211 (225)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHcCCcHHHH-HHHHHHH
Confidence            555555555554332 3444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.06  E-value=8.6e-10  Score=105.55  Aligned_cols=132  Identities=15%  Similarity=0.067  Sum_probs=96.1

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|++++|+..|.+++. .+..            .....++.++|.++.++|++++|+..++++++.+|.
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLY------------PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTC------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHh-CccC------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            345566666666777777777776665 1000            112345788899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      +..+++.+|.++..+|++++|+..|+++++.+|.+..+...+..+....++..+ ....++++...
T Consensus       174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~~~~  238 (252)
T 2ho1_A          174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT-AASYGLQLKRL  238 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH-HHHHHHHHHHH
Confidence            999999999999999999999999999999999888777777776665554443 23455555444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.06  E-value=5.7e-10  Score=101.31  Aligned_cols=81  Identities=16%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYNKKEAKFYGN  542 (567)
Q Consensus       465 ~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~~~~~~~~~~e~~~~~~  542 (567)
                      ..|+..++++++.+|+++.+++++|.++..+|++++|+..|+++++++|++  ..++..+..+...+++..+ ....|++
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~-A~~~y~~  169 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA-IASKYRR  169 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH-HHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc-HHHHHHH
Confidence            345677777777788888999999999999999999999999999999875  4467777766665554433 3345555


Q ss_pred             hhHh
Q 008400          543 MFAK  546 (567)
Q Consensus       543 ~f~~  546 (567)
                      .+..
T Consensus       170 al~~  173 (176)
T 2r5s_A          170 QLYS  173 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.06  E-value=1.4e-09  Score=107.48  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHH----HhccCHHHHHHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~----~k~~~~~~Ai~~~~~al  475 (567)
                      ..+...|..+.+.|++++|+..|++++...+...                 ..+++.++    ...+++++|+..+++++
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l  193 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEMA  193 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            4556677888888888899888888887754321                 12222222    22366666666666666


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      +.+|+++.+++++|.++..+|++++|+..|+++++++|+|.++...+..+...+++
T Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            66666666666666666666666666666666666666666665555555444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.06  E-value=1.1e-09  Score=106.01  Aligned_cols=117  Identities=18%  Similarity=0.135  Sum_probs=102.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|++++...+....               ++.++|.+|..+|++++|+..++++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            344678999999999999999999999998776442               48899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      |.++.+++++|..++..+++++|+..|+++++++|++..+...+..+...+.
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            9999999999944555569999999999999999999877777777666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.05  E-value=1.2e-09  Score=109.81  Aligned_cols=110  Identities=26%  Similarity=0.284  Sum_probs=100.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|++++...+...               .+++++|.|+..+|++++|+..+++++.++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999866432               358899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP---DNRDVKLEYK  523 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P---~n~~~~~~l~  523 (567)
                      |++..+++.+|.++..+|++++|+..|+++++++|   ++..+...+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            99999999999999999999999999999999999   8877776664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.05  E-value=3e-09  Score=90.27  Aligned_cols=94  Identities=14%  Similarity=0.089  Sum_probs=83.9

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ++++|.++++.|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|++|++++|++..+...+..+....+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999988888877777


Q ss_pred             HHHHHHHHHHHHhhH
Q 008400          531 EYNKKEAKFYGNMFA  545 (567)
Q Consensus       531 ~~~~~e~~~~~~~f~  545 (567)
                      +..+.. ..|.+...
T Consensus       100 ~~~~A~-~~~~~al~  113 (121)
T 1hxi_A          100 NANAAL-ASLRAWLL  113 (121)
T ss_dssp             HHHHHH-HHHHHHHC
T ss_pred             CHHHHH-HHHHHHHH
Confidence            665543 45555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.8e-09  Score=91.84  Aligned_cols=99  Identities=19%  Similarity=0.169  Sum_probs=86.5

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ...+.++|.++++.|+|++|+..++++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..+...++.+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999988888888877


Q ss_pred             HHHHHHHHHHHHHHHhhHhh
Q 008400          528 KMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~~  547 (567)
                      .+++..+. ...|.+.+...
T Consensus        84 ~~~~~~~A-~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASA-LETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHH-HHHHHHHHHHH
T ss_pred             HHhCHHHH-HHHHHHHHHhC
Confidence            77666543 34566655543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.05  E-value=5.3e-10  Score=113.59  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=67.3

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|+|++|+..|++++...+.+.               .+++++|.+|.++|++++|+..++++++++|+
T Consensus       215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            445566666667777777777777766654322               23667777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      ++.+++++|.+|..+|++++|+..|+++++++|+
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            7777777777777777777777777777777666

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.04  E-value=1e-09  Score=104.01  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..++.++|.++.++|++++|+..+++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence            34688999999999999999999999999999999999999999999999999999999999999999888877766644

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.04  E-value=9e-10  Score=116.88  Aligned_cols=106  Identities=30%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      +.+.+..+...|+.+++.|+|.+|+..|++++...+.                ..+++++|.||.++|+|++|+..|+++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            4677899999999999999999999999999998652                235889999999999999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ++++|++..+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999999999999764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.04  E-value=1.1e-09  Score=108.38  Aligned_cols=112  Identities=24%  Similarity=0.263  Sum_probs=91.3

Q ss_pred             HHhhhhhhhhHHHhc-CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      .+..+.+.|..+... |+|++|+..|++|+.+.+.....         .....++.++|.+|.++|+|++|+.+|++++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356788899999996 99999999999999988754321         22345689999999999999999999999999


Q ss_pred             cCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008400          477 LDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       477 ~~p~~~k-------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~  518 (567)
                      +.|.+..       +++++|.+|..+|++++|+..|+++++++|+....
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9887642       78999999999999999999999999999997543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.03  E-value=6.4e-10  Score=112.98  Aligned_cols=130  Identities=9%  Similarity=0.017  Sum_probs=105.7

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      ..|..+...|++++|+..|++++...+....             ..+++++|.+|.++|++++|+..++++++++|+++.
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  248 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS  248 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3488899999999999999999998765221             234889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      +++++|.+|..+|++++|+..|+++++++|++..+...+..+...+++..++ ...|+++....
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~  311 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA-VSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC
Confidence            9999999999999999999999999999999998888888887766655433 34566655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.03  E-value=1.9e-09  Score=103.18  Aligned_cols=128  Identities=17%  Similarity=0.149  Sum_probs=99.7

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc--cC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--LD  478 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~--~~  478 (567)
                      .+...|..++..|++++|+..|.+++...+..               ..++.++|.+|..+|++++|+..+++++.  .+
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  137 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRN---------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY  137 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC
Confidence            45556666777777777777777777664432               23588999999999999999999999999  88


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      |.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+....++..++ ...|.++.
T Consensus       138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~  202 (252)
T 2ho1_A          138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA-RQYYDLFA  202 (252)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence            888999999999999999999999999999999999988877777776665544433 23444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.03  E-value=9.3e-10  Score=117.66  Aligned_cols=115  Identities=25%  Similarity=0.361  Sum_probs=99.4

Q ss_pred             ccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHH
Q 008400          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (567)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (567)
                      ...++..++...+..+...|+.+++.|+|++|+..|++++...|.+.               .+++++|.||.++|++++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---------------VFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHH
Confidence            44578888899999999999999999999999999999999876543               458999999999999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      |+..|++++.++|+++.+++++|.+|..+|++++|+..|+ ++.++|++..
T Consensus        78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence            9999999999999999999999999999999999999996 8888888653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.02  E-value=2.4e-09  Score=88.27  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ..++++|.+++++|+|++|+..++++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4588999999999999999999999999999999999999999999999999999999999999998

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.02  E-value=2.4e-09  Score=100.02  Aligned_cols=97  Identities=13%  Similarity=0.060  Sum_probs=75.6

Q ss_pred             HHHhhHHHHHHhc-cCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKL-KDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       449 ~~~~nla~~~~k~-~~~~~Ai~~~~~al~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      .++.++|.++..+ +++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|+++++.+|.+..+...+..+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3577888888888 899999999999888  5666688888899999999999999999999999988888777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhHh
Q 008400          526 KEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       526 ~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ....++..+. ...|.++...
T Consensus       157 ~~~~~~~~~A-~~~~~~~~~~  176 (225)
T 2vq2_A          157 KMLAGQLGDA-DYYFKKYQSR  176 (225)
T ss_dssp             HHHHTCHHHH-HHHHHHHHHH
T ss_pred             HHHcCCHHHH-HHHHHHHHHh
Confidence            6666555433 3355555543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.02  E-value=2.9e-09  Score=99.41  Aligned_cols=118  Identities=18%  Similarity=0.119  Sum_probs=88.8

Q ss_pred             hhhhhhHHHhc-CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          402 KKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       402 ~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      +...|..++.. |++++|+..|++++. .+...            ....++.++|.++.++|++++|+..++++++.+|.
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPTYP------------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCS------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34445555555 555555555555554 11111            12356889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP-DNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~~~  532 (567)
                      +..+++.+|.++..+|++++|+..|+++++++| .+......+..+....+..
T Consensus       146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA  198 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence            999999999999999999999999999999999 8887776666555444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.01  E-value=4.1e-09  Score=83.50  Aligned_cols=80  Identities=33%  Similarity=0.411  Sum_probs=74.0

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..+++++|.++..+++|++|+..+++++..+|.+..+++++|.++..++++++|+..|+++++++|++..+...+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999888777766643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=2.3e-09  Score=105.92  Aligned_cols=146  Identities=12%  Similarity=0.029  Sum_probs=110.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-  477 (567)
                      +..+...|..++..++|++|+..|++|+.+.......         .....+++++|.+|..+|+|++|+.+++++++. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4455568888888899999999999999865443322         123456999999999999999999999999942 


Q ss_pred             ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          478 ------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       478 ------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                            .+....+++++|.+|..+|+|++|+..+++|+++.+..      ..+...++.+...+++..++....|++.+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence                  22336799999999999999999999999999987554      456666777766665332344556777666


Q ss_pred             hhhhcccc
Q 008400          546 KMKSRAQG  553 (567)
Q Consensus       546 ~~~~~~~~  553 (567)
                      -.....+.
T Consensus       266 i~~~~~~~  273 (293)
T 3u3w_A          266 FFDILEMH  273 (293)
T ss_dssp             HHHHTTCT
T ss_pred             HHHHhCCH
Confidence            55544443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.00  E-value=3.9e-09  Score=110.16  Aligned_cols=112  Identities=26%  Similarity=0.270  Sum_probs=101.4

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..+++.|+|.+|+..|++++...+.+               ..+++++|.||.++|++++|+..++++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            457788999999999999999999999999876543               34588999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYK  523 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~  523 (567)
                      .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+.
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  138 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI  138 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            9999999999999999999999999999999999999987   6655553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.99  E-value=2.3e-09  Score=90.91  Aligned_cols=101  Identities=32%  Similarity=0.416  Sum_probs=90.8

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ..+...|..++..|++++|+..|.+++...+..               ..+++++|.++...+++++|+..+++++...|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            345667888999999999999999999875532               23478999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      .+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.99  E-value=4e-09  Score=92.00  Aligned_cols=100  Identities=8%  Similarity=0.016  Sum_probs=87.1

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ...++++|.++++.|+|++|+..+++++..+|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++..+...+..+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999888888877


Q ss_pred             HHHHHHHHHHHHHHHhhHhhh
Q 008400          528 KMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      .+++..+.. ..|.+......
T Consensus        98 ~~g~~~~A~-~~~~~al~~~p  117 (142)
T 2xcb_A           98 QLGDLDGAE-SGFYSARALAA  117 (142)
T ss_dssp             HTTCHHHHH-HHHHHHHHHHH
T ss_pred             HcCCHHHHH-HHHHHHHHhCC
Confidence            776665433 45666655443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.99  E-value=6.3e-09  Score=105.31  Aligned_cols=148  Identities=9%  Similarity=0.013  Sum_probs=115.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh----------------------------HHHHHHH------
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------------------------EEKKQAK------  444 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------------------------e~~~~~~------  444 (567)
                      +..+...|..++..|++++|+..|.+++...+.......                            +-....+      
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  211 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  211 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence            345677788888888999999999888887664332110                            0000000      


Q ss_pred             HH--HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400          445 AL--KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (567)
Q Consensus       445 ~~--~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  522 (567)
                      ..  ...++.++|.+|.++|++++|+..+++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..+...+
T Consensus       212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            01  3567889999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          523 KTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       523 ~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      ..+....++..++ ...|.++....
T Consensus       292 ~~~~~~~g~~~~A-~~~~~~al~~~  315 (368)
T 1fch_A          292 GISCINLGAHREA-VEHFLEALNMQ  315 (368)
T ss_dssp             HHHHHHHTCHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHH-HHHHHHHHHhC
Confidence            8887776665543 34556655543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.98  E-value=3.8e-09  Score=93.23  Aligned_cols=100  Identities=14%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHh----
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-------NVK-----ALYRRAQAYIQMADLDLAEFDIKKALEI----  511 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-------~~k-----a~~~~a~a~~~l~~~~~A~~~~~~al~l----  511 (567)
                      ...+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|++||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            345789999999999999999999999999999       554     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          512 ---DPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       512 ---~P~n~~~~----~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                         +|++..++    ..++.+...+++..++. ..|++...-.+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p  133 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIE  133 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCC
Confidence               99997777    66677766666666543 46666655433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.98  E-value=2.2e-09  Score=106.45  Aligned_cols=134  Identities=18%  Similarity=0.184  Sum_probs=110.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|++++|+..|.+++...+...               .++.++|.++..+|++++|+..++++++.+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA---------------QLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            34567788999999999999999999998865432               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------------NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~------------n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |.+..+++.+|.+|..+|++++|+..|+++++++|+            +..+...+..+...+++..++ ...+++.+..
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~  315 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV-ELTYAQNVEP  315 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH-HHHTTCCSHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Confidence            999999999999999999999999999999999999            677777777776666555433 2344444444


Q ss_pred             hh
Q 008400          547 MK  548 (567)
Q Consensus       547 ~~  548 (567)
                      +.
T Consensus       316 ~~  317 (327)
T 3cv0_A          316 FA  317 (327)
T ss_dssp             HH
T ss_pred             cc
Confidence            33

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.98  E-value=2.2e-09  Score=110.10  Aligned_cols=145  Identities=17%  Similarity=0.091  Sum_probs=91.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCC-------------CChHHHHHH------HHHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~e~~~~~------~~~~~~~~~nla~~~~  459 (567)
                      +..+...|..+...|++.+|+..|++++...+....             ..++-....      ......++.++|.+|.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            445566666777777777777777777665443210             001111100      0112345677788888


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      ++|++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|.+..+...+..+....++..+. ...
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~  327 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-VRL  327 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH-HHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-HHH
Confidence            8888888888888888888888888888888888888888888888888888887777666666665544444332 234


Q ss_pred             HHHhh
Q 008400          540 YGNMF  544 (567)
Q Consensus       540 ~~~~f  544 (567)
                      |.++.
T Consensus       328 ~~~al  332 (388)
T 1w3b_A          328 YRKAL  332 (388)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            44443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.98  E-value=4.4e-09  Score=94.04  Aligned_cols=99  Identities=20%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      ....++++|.++++.++|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999998888888887


Q ss_pred             HHHHHHHHHHHHHHHHhhHh
Q 008400          527 EKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       527 ~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ..+++..+.. ..|.+.+..
T Consensus        90 ~~~g~~~~A~-~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAK-EAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHH-HHHHHHHHH
T ss_pred             HHccCHHHHH-HHHHHHHHh
Confidence            7776655433 455555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.98  E-value=6.6e-09  Score=103.13  Aligned_cols=145  Identities=9%  Similarity=-0.011  Sum_probs=93.4

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh-------------HHHHHHH------HHHHHHHhhHHHHHHh
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------------EEKKQAK------ALKVACNLNNAACKLK  460 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------e~~~~~~------~~~~~~~~nla~~~~k  460 (567)
                      ..+...|..++..|+|++|+..|++++...+.......             +-.....      .....+++++|.++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34566777888888888888888888877665543310             0000000      0113356777777777


Q ss_pred             cc-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          461 LK-DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       461 ~~-~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      ++ ++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++++.|++..+...+..+....++..+. ...
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~  181 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA-ERF  181 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH-HHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH-HHH
Confidence            77 7777777777777777777777777777777777777777777777777777766666666665554444332 234


Q ss_pred             HHHhhH
Q 008400          540 YGNMFA  545 (567)
Q Consensus       540 ~~~~f~  545 (567)
                      |.+.+.
T Consensus       182 ~~~al~  187 (330)
T 3hym_B          182 FSQALS  187 (330)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=2.8e-09  Score=109.32  Aligned_cols=146  Identities=15%  Similarity=0.104  Sum_probs=103.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHH------HHHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQA------KALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~------~~~~~~~~~nla~~~~  459 (567)
                      ...+...|..+...|++++|+..|.+++...+.....             .++-....      ......++.++|.++.
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  214 (388)
T 1w3b_A          135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK  214 (388)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            4456788999999999999999999999886643211             00001111      1112446778888888


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      ..+++++|+..+.+++.++|+++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+....++..+. ...
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~  293 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA-EDC  293 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH-HHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHH
Confidence            8888888888888888888888888888888888888888888888888888888877777777665555544432 234


Q ss_pred             HHHhhH
Q 008400          540 YGNMFA  545 (567)
Q Consensus       540 ~~~~f~  545 (567)
                      |.++..
T Consensus       294 ~~~al~  299 (388)
T 1w3b_A          294 YNTALR  299 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=4e-09  Score=102.01  Aligned_cols=142  Identities=22%  Similarity=0.236  Sum_probs=113.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|.+++..........       ......++.++|.+|..+|++++|+.++.+++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4567788999999999999999999999998864321100       134566799999999999999999999999998


Q ss_pred             c--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (567)
Q Consensus       477 ~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e~~~~  540 (567)
                      +        +|....+++++|.+|..+|++++|+..|++++++        +|....+...+..+....++..++ ...|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~  192 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA-ETLY  192 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH-HHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHH
Confidence            8        5677899999999999999999999999999999        666666677777776666555433 3455


Q ss_pred             HHhhHh
Q 008400          541 GNMFAK  546 (567)
Q Consensus       541 ~~~f~~  546 (567)
                      .++...
T Consensus       193 ~~~l~~  198 (283)
T 3edt_B          193 KEILTR  198 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.96  E-value=7.9e-09  Score=90.64  Aligned_cols=109  Identities=19%  Similarity=0.152  Sum_probs=93.8

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+...|..++..|+|++|+..|.+++.+.+....         ......++.++|.++..+|++++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456778899999999999999999999999998765332         13345678999999999999999999999999


Q ss_pred             ccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      .+.+..      ..+++++|.++..+|++++|+..+++++++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            875543      67899999999999999999999999998843

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.95  E-value=4.3e-09  Score=104.46  Aligned_cols=133  Identities=17%  Similarity=0.086  Sum_probs=112.3

Q ss_pred             HhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      +..+...|..++..| ++++|+..|.+++...+...               .++.++|.++..+|++++|+..++++++.
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---------------PAWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345677888889999 89999999999998766543               23889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      .|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....++..+.. ..|.++....
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~  223 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE-KWFLDALEKI  223 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH-HHHHHHHHHh
Confidence            99999999999999999999999999999999999999888888888776666555433 4555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.93  E-value=5.5e-09  Score=85.26  Aligned_cols=68  Identities=18%  Similarity=0.186  Sum_probs=64.1

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ..+++++|.+|+++|+|++|+..++++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            34588999999999999999999999999999999999999999999999999999999999997653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.93  E-value=3.9e-09  Score=102.09  Aligned_cols=128  Identities=11%  Similarity=-0.029  Sum_probs=105.0

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHH
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~  485 (567)
                      +..+...++|++|+..|++++...+..           ......+++++|.++..+|++++|+..+++++.++|.++.++
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   80 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF   80 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhccccc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH
Confidence            344556789999999999999863211           123456689999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      +++|.+|..+|++++|+..|+++++++|.+..+...+..+....++..+. ...|.+++.
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~  139 (275)
T 1xnf_A           81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA-QDDLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH-HHHHHHHHH
Confidence            99999999999999999999999999999988888888876666555432 345555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.92  E-value=1.3e-08  Score=107.73  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=112.1

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~  472 (567)
                      .+.+..+....+.+..+..+|+|++|+..|+++|..........       +......+.|+|.+|..+|+|++|+.++.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            45566777788888888899999999999999999866433221       24466779999999999999999999999


Q ss_pred             HHhcc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH---HHHHHHHHHHHHHH
Q 008400          473 KVLDL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEY---KTLKEKMKEYNKKE  536 (567)
Q Consensus       473 ~al~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l---~~~~~~~~~~~~~e  536 (567)
                      ++|.+     -|++   ...++++|.+|..+|+|++|+..|++|+++     -|+++.....+   ..+...++.+++++
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99875     3444   578999999999999999999999999976     57777655544   44444455555444


Q ss_pred             HHHHHHhhHh
Q 008400          537 AKFYGNMFAK  546 (567)
Q Consensus       537 ~~~~~~~f~~  546 (567)
                       .+|+++-..
T Consensus       456 -~~~~~~~~~  464 (490)
T 3n71_A          456 -FMYHKMREA  464 (490)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             355555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.91  E-value=5.3e-09  Score=103.36  Aligned_cols=97  Identities=13%  Similarity=0.067  Sum_probs=86.6

Q ss_pred             HhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 008400          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (567)
Q Consensus       410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a  489 (567)
                      ...|++++|+..|++++...|.+.               .+++++|.|+.++|+|++|+..++++++++|+++.+++++|
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTL---------------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345899999999999999866433               34889999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHH
Q 008400          490 QAYIQMADLDL-AEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       490 ~a~~~l~~~~~-A~~~~~~al~l~P~n~~~~~~  521 (567)
                      .++..+|++++ |...++++++++|++..+...
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999976 568999999999999876543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.90  E-value=6.2e-09  Score=109.52  Aligned_cols=125  Identities=15%  Similarity=0.059  Sum_probs=98.3

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|++.|++|+++.+.....      ........+|.|+|.+|..+|+|++|+.++++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            4556788999999999999999999999986542210      0001124458899999999999999999999998763


Q ss_pred             --------CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          479 --------SRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       479 --------p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                              +..+.++.++|.++..++  +|++|+.+|++|++++|++.++...+..+...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                    456788999998887754  699999999999999999988877776654443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.89  E-value=6.7e-09  Score=103.37  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=87.1

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+.+.|..+.. |+|++|+..|++|+.+.+....         ......++.|+|.+|.++|+|++|+.+|++++.+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45666777888777 8888888888888887664321         1234567899999999999999999999999988


Q ss_pred             CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       478 ~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      .|.+      ..+++++|.+++.+|++++|+..|++++ ++|...
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            6543      3588899999999999999999999999 999754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=8.9e-09  Score=101.61  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=92.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|++|+.........        ......+++|+|.+|.++|+|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45568899999999999999999999999877654221        2456668999999999999999999999999987


Q ss_pred             CCCC------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC
Q 008400          478 DSRN------VKALYRRAQAYIQMA-DLDLAEFDIKKALEID  512 (567)
Q Consensus       478 ~p~~------~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~  512 (567)
                      .+..      ..+|+++|.+|..+| .+++|+.+|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            6443      789999999999999 5799999999999763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.89  E-value=8.1e-10  Score=89.63  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=57.8

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                      .+++|.++++.++|++|+..|+++++.+|+++. +++++|.+|..+|++++|+.+|+++++++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            357788888888888888888888888888888 888888888888888888888888888888886655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.88  E-value=1.7e-08  Score=86.70  Aligned_cols=101  Identities=15%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ...++++|.++++.++|++|+..+.+++.++|+++.+++++|.++..++++++|+.+|+++++++|++..+...+..+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999988888888877


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhh
Q 008400          528 KMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                      .+++..+. ...|++.+.....
T Consensus        89 ~~~~~~~A-~~~~~~a~~~~p~  109 (137)
T 3q49_B           89 EMESYDEA-IANLQRAYSLAKE  109 (137)
T ss_dssp             HTTCHHHH-HHHHHHHHHHHHH
T ss_pred             HHhhHHHH-HHHHHHHHHHChh
Confidence            77666543 3466666654433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.88  E-value=1.1e-08  Score=82.89  Aligned_cols=60  Identities=12%  Similarity=-0.017  Sum_probs=54.0

Q ss_pred             HH-HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          448 VA-CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       448 ~~-~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      .. +++++|.||.+++++++|+.+++++++++|++..++++        +.+.+|+..|++++.++|++
T Consensus        34 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           34 KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            45 89999999999999999999999999999999998865        67788999999999888876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.87  E-value=2.8e-08  Score=98.02  Aligned_cols=136  Identities=14%  Similarity=0.055  Sum_probs=98.5

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh---cc
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL---DL  477 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al---~~  477 (567)
                      .+...|..+...|+|++|+..|.+|+.........         .....+++++|.+|..+++|++|+.++++++   +.
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~  187 (293)
T 2qfc_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA  187 (293)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            34456777777788888888888888765443222         1135578999999999999999999999999   44


Q ss_pred             CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       478 ~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      .|++    ..+++++|.+|..+|+|++|+..|++|+++.++.      ..+...++.+...+++.+++-...|++...
T Consensus       188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          188 LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            5554    2799999999999999999999999999986431      345555666665555544442334554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.87  E-value=2.1e-08  Score=102.76  Aligned_cols=129  Identities=14%  Similarity=0.111  Sum_probs=95.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|.+|+..|.+|+.+.+.....        ......+++++|.+|..+|+|++|+.++++++.
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS  212 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456777888888888888888888888888887655431        123456788888888888888888888888887


Q ss_pred             cCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHH
Q 008400          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEI-----D-PDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~-P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      +.+..      ..+++++|.+|..+|++++|+.+|++|+++     + |....+...++.+...+++..
T Consensus       213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  281 (383)
T 3ulq_A          213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID  281 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence            75432      358888888888888888888888888884     4 555555555666555544433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.6e-08  Score=107.22  Aligned_cols=117  Identities=17%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh---ccCHHHHHHHHHHHhcc
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k---~~~~~~Ai~~~~~al~~  477 (567)
                      .+...|..++..|++++|+..|.+++...+......         ....+++++|.++.+   +|++++|+..+++++..
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS---------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            455667777888888888888888887766554310         001258899999999   99999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      +|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988877765543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.86  E-value=5.5e-09  Score=113.35  Aligned_cols=119  Identities=17%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .|++++|+..|+++++..+.+.               .+++++|.+|..+|+|++|+..++++++++|++..+++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDF---------------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4789999999999998766433               3489999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |..+|++++|+..|+++++++|++..+...+..+....++..++ .+.|++.+..
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  120 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-AAAYTRAHQL  120 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Confidence            99999999999999999999999998888888887776655543 3455555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.86  E-value=1.4e-08  Score=103.88  Aligned_cols=109  Identities=14%  Similarity=-0.009  Sum_probs=96.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|.+|+.+.+....         ......++.|+|.||..+|++++|+.++++++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46777889999999999999999999999998754322         134566799999999999999999999999999


Q ss_pred             -----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          477 -----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       477 -----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                           .+|....+++++|.+|..+|++++|+..+++++++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                 78888999999999999999999999999999999654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.85  E-value=1.2e-08  Score=104.45  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=96.3

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+...|..+...|+|++|+..|.+|+.+.+....         ......+++|+|.||..+|++++|+.++++++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445677889999999999999999999999998775432         23456679999999999999999999999999


Q ss_pred             c-----cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          476 D-----LD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       476 ~-----~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      +     .+ |....+++++|.+|..+|++++|+..|++|+++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     56 77899999999999999999999999999999853

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.85  E-value=5.1e-09  Score=108.62  Aligned_cols=85  Identities=15%  Similarity=0.268  Sum_probs=76.2

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008400          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (567)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~  244 (567)
                      ..+..||.|+++|.+.. +|+.|+++  .++.|.+|.|.++|||+++|.||+.|+++.|.+|+..+||..+.        
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCCccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------
Confidence            35789999999999995 99999976  89999999999999999999999999999999999999996543        


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008400          245 VPPNATLQIALELVSWKT  262 (567)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (567)
                        ++.+++|+|+|.++..
T Consensus       227 --ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          227 --KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             --SSCEEEEEEECCEECC
T ss_pred             --CCceEEEEEEEEEEec
Confidence              6789999999998753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.85  E-value=1.1e-08  Score=109.25  Aligned_cols=153  Identities=14%  Similarity=0.048  Sum_probs=116.1

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhcc------------CCCChHHHHHHHH------HHHHHHhhHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD------------TSFGDEEKKQAKA------LKVACNLNNAA  456 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~------------~~~~~e~~~~~~~------~~~~~~~nla~  456 (567)
                      ....+..+...|..++..|++++|+..|.+++...+..            ....++-....+.      ....++.++|.
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  318 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ  318 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            34557778888888888888888888888888765530            0001111111111      12457889999


Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                      ++..+|++++|+..+++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....++..++ 
T Consensus       319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-  397 (537)
T 3fp2_A          319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA-  397 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999988888888887666655433 


Q ss_pred             HHHHHHhhHhhh
Q 008400          537 AKFYGNMFAKMK  548 (567)
Q Consensus       537 ~~~~~~~f~~~~  548 (567)
                      ...|.++.....
T Consensus       398 ~~~~~~a~~~~~  409 (537)
T 3fp2_A          398 IKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC
Confidence            346666655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.84  E-value=9.7e-09  Score=102.18  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=91.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+.+.|..+...|+|++|+..|++|+.+.......         .....++.|+|.+|.. +++++|+.+|++++.
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            346677788888888899999999999999886543321         2345678999999999 999999999999999


Q ss_pred             cCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +.+..      ..+++++|.+|..+|+|++|+..|++++++.|++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            87643      6789999999999999999999999999997655

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.83  E-value=4.8e-08  Score=96.70  Aligned_cols=147  Identities=12%  Similarity=0.039  Sum_probs=114.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCC------------------------hHHHHH----HHH-----
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------------------DEEKKQ----AKA-----  445 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------------------~e~~~~----~~~-----  445 (567)
                      ...+...|..++..|++++|+..|.+++...+......                        .....+    .+.     
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  168 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN  168 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence            34567788899999999999999999998765432211                        001111    111     


Q ss_pred             -HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          446 -LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       446 -~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                       ....++.++|.++.++|++++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             1245788999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHh
Q 008400          525 LKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       525 ~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      +....++..++ .+.|.++...
T Consensus       249 ~~~~~g~~~~A-~~~~~~a~~~  269 (327)
T 3cv0_A          249 SYSNMSQYDLA-AKQLVRAIYM  269 (327)
T ss_dssp             HHHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHHhccHHHH-HHHHHHHHHh
Confidence            77666555433 3455555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.83  E-value=1.1e-08  Score=80.98  Aligned_cols=84  Identities=26%  Similarity=0.315  Sum_probs=75.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|++++...+...               .+++++|.++.+++++++|+..+++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456778899999999999999999999998865432               34889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcC
Q 008400          478 DSRNVKALYRRAQAYIQMA  496 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~  496 (567)
                      +|++..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.82  E-value=1.4e-08  Score=90.58  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=84.1

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (567)
                      ...+.++|.++++.|+|++|+..|.+++.+                  +|.+..+|+++|.||+.+|+|++|+.++++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445789999999999999999999999999                  77788999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       510 ~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      +++|++..+...++.+...+++..++. ..|.+.+..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~-~~~~~al~l  126 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAE-EDLKLLLRN  126 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHH-HHHHHHHhc
Confidence            999999888888888877776665443 355555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.82  E-value=1.2e-08  Score=83.59  Aligned_cols=95  Identities=13%  Similarity=0.067  Sum_probs=81.8

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKE  527 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--n~~~~~~l~~~~~  527 (567)
                      +++++|.++...+++++|+..++++++++|.+..+++++|.++..+|++++|+.+|+++++++|.  +..+...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999  9888888877766


Q ss_pred             HH-HHHHHHHHHHHHHhhH
Q 008400          528 KM-KEYNKKEAKFYGNMFA  545 (567)
Q Consensus       528 ~~-~~~~~~e~~~~~~~f~  545 (567)
                      .+ ++..+ ..+.+.+...
T Consensus        88 ~~~~~~~~-A~~~~~~~~~  105 (112)
T 2kck_A           88 YIEGKEVE-AEIAEARAKL  105 (112)
T ss_dssp             TCSSCSHH-HHHHHHHHGG
T ss_pred             HHhCCHHH-HHHHHHHHhh
Confidence            65 54443 3344554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.80  E-value=2.9e-08  Score=84.25  Aligned_cols=98  Identities=19%  Similarity=0.213  Sum_probs=84.2

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT  524 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n---~~~~~~l~~  524 (567)
                      ++++|.++++.|+|++|+..+++++..+|++.   .+++++|.++..+|+|++|+..|+++++.+|++   ..+...+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            67899999999999999999999999999998   899999999999999999999999999999999   777788888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          525 LKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       525 ~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                      +...+++..+. ...|.++....+.
T Consensus        85 ~~~~~g~~~~A-~~~~~~~~~~~p~  108 (129)
T 2xev_A           85 SQYGEGKNTEA-QQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHTTCHHHH-HHHHHHHHHHSTT
T ss_pred             HHHHcCCHHHH-HHHHHHHHHHCCC
Confidence            77766655443 3466666665443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.79  E-value=1.6e-08  Score=88.00  Aligned_cols=102  Identities=15%  Similarity=0.205  Sum_probs=83.9

Q ss_pred             cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc---CHHHHHHHHHHHhccC-C-CCHHHHHHH
Q 008400          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVLDLD-S-RNVKALYRR  488 (567)
Q Consensus       414 ~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~---~~~~Ai~~~~~al~~~-p-~~~ka~~~~  488 (567)
                      ....+.+.|.+++...+.               ...+.+++|.|+.+.+   +.++++..++.+++.+ | .+..++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~---------------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L   77 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   77 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCC---------------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence            345566777777653221               1244789999999988   7779999999999998 7 679999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       489 a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      |.+|+++++|++|+.+++++|+++|+|..+..+...+..++.
T Consensus        78 Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888777766553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=3.7e-08  Score=90.55  Aligned_cols=141  Identities=11%  Similarity=0.077  Sum_probs=105.0

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|.+++.+......         ......++.++|.+|..+|++++|+.++.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4667888999999999999999999999998765432         1345667999999999999999999999999987


Q ss_pred             ---CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400          478 ---DS----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRD----VKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       478 ---~p----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--n~~----~~~~l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                         .+    ....+++++|.++..+|++++|+..+++++++.+.  +..    +...+..+....++..+ ....+.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al  174 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE-AQQHWLRAR  174 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH-HHHHHHHHH
Confidence               33    23578999999999999999999999999987432  221    12344444444444333 233455555


Q ss_pred             Hhhh
Q 008400          545 AKMK  548 (567)
Q Consensus       545 ~~~~  548 (567)
                      ....
T Consensus       175 ~~~~  178 (203)
T 3gw4_A          175 DIFA  178 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.78  E-value=5e-08  Score=99.84  Aligned_cols=143  Identities=15%  Similarity=0.072  Sum_probs=107.2

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+...|..++..|++..|+..|.+|+.+.+.....        ......+++++|.+|..+|+|++|+.++.+++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455666777777777777777777777777776644322        12356789999999999999999999999999


Q ss_pred             ccCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400          476 DLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALE-----IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       476 ~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~-----l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      ++.+      ....+++++|.+|..+|++++|+..|++|++     .+|....+...++.+...+++..++ ...+.+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al  288 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA-FQFIEEGL  288 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH-HHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH
Confidence            8643      1257899999999999999999999999999     6777766666777776666555433 34555555


Q ss_pred             Hhh
Q 008400          545 AKM  547 (567)
Q Consensus       545 ~~~  547 (567)
                      ...
T Consensus       289 ~~~  291 (378)
T 3q15_A          289 DHI  291 (378)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=5.8e-08  Score=80.22  Aligned_cols=97  Identities=18%  Similarity=0.176  Sum_probs=83.4

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ...++++|.++...++|++|+..+++++..+|.++.+++++|.++..++++++|+..++++++++|++..+...+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999888888888776


Q ss_pred             HHHHHHHHHHHHHHHhhH
Q 008400          528 KMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~  545 (567)
                      ..++..+. ...|.+...
T Consensus        84 ~~~~~~~A-~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEA-KRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHH-HHHHHHHHT
T ss_pred             HHhhHHHH-HHHHHHHHH
Confidence            66555433 334555544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.78  E-value=3.5e-08  Score=95.23  Aligned_cols=109  Identities=18%  Similarity=0.058  Sum_probs=93.6

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+...|..++..|+|++|+..|.+++..........       ......++.++|.+|..+|++++|+.++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567788999999999999999999999998854321110       13356679999999999999999999999999


Q ss_pred             cc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       476 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      .+        +|....+++++|.+|..+|++++|+..|++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7777899999999999999999999999999987

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.78  E-value=2.8e-08  Score=98.02  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|++|+.+.......        ......+++|+|.+|.++|+|++|+.++++++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999876544322        1223367999999999999999999999999987


Q ss_pred             CCC------CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 008400          478 DSR------NVKALYRRAQAYIQMADLDLA-EFDIKKALEID  512 (567)
Q Consensus       478 ~p~------~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~  512 (567)
                      .+.      ...+++++|.+|..+|++++| ...|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            542      278999999999999999999 78899999763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.78  E-value=4.2e-08  Score=85.89  Aligned_cols=108  Identities=21%  Similarity=0.232  Sum_probs=91.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|.+++.+.+.....         .....++.++|.++..++++++|+.++++++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34577889999999999999999999999987654321         334667899999999999999999999999876


Q ss_pred             CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          478 DSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       478 ~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      .+.      ...+++++|.+|..+|++++|+..+++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            322      2578999999999999999999999999987654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=4.5e-08  Score=100.75  Aligned_cols=125  Identities=14%  Similarity=0.083  Sum_probs=104.4

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+...|..++..|+|++|+..|++++...+.+.           .....+++++|.+|..+|++++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45677888999999999999999999999999854321           2345578999999999999999999999999


Q ss_pred             cc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Q 008400          476 DL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       476 ~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~  531 (567)
                      .+      ++....+++++|.+|..+|++++|+..|++++++      .|....+...+..+....++
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            88      5677899999999999999999999999999998      44444556666666655555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.77  E-value=5.8e-08  Score=82.34  Aligned_cols=98  Identities=21%  Similarity=0.287  Sum_probs=85.0

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ...++++|.++...++|++|+..+++++..+|.+..+++++|.+|..++++++|+.+|+++++++|.+..+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999888888888877


Q ss_pred             HHHHHHHHHHHHHHHhhHh
Q 008400          528 KMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~  546 (567)
                      ..++..++ .+.|.+....
T Consensus        96 ~~~~~~~A-~~~~~~~~~~  113 (133)
T 2lni_A           96 AMKDYTKA-MDVYQKALDL  113 (133)
T ss_dssp             HTTCHHHH-HHHHHHHHHH
T ss_pred             HHhhHHHH-HHHHHHHHHh
Confidence            66655543 3455555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.76  E-value=4.4e-08  Score=96.18  Aligned_cols=142  Identities=21%  Similarity=0.230  Sum_probs=110.6

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|.+++..........       ......++.++|.+|..+|++++|+.++.+++.
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  139 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  139 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            3456778899999999999999999999998864321000       133556789999999999999999999999998


Q ss_pred             cC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (567)
Q Consensus       477 ~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e~~~~  540 (567)
                      +.        |....+++++|.++..+|++++|+..|++++++        .|....+...+..+....++..++ ...|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~  218 (311)
T 3nf1_A          140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA-ETLY  218 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH-HHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHH
Confidence            74        556789999999999999999999999999998        555555666667666666555443 3455


Q ss_pred             HHhhHh
Q 008400          541 GNMFAK  546 (567)
Q Consensus       541 ~~~f~~  546 (567)
                      .++...
T Consensus       219 ~~al~~  224 (311)
T 3nf1_A          219 KEILTR  224 (311)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.76  E-value=5.2e-08  Score=105.62  Aligned_cols=133  Identities=11%  Similarity=-0.025  Sum_probs=108.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+++.|++++|++.|++++...+.+               ..++++++.+|.+.|++++|+..+++++..+
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3445667788888888888888888888765432               2348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      |++..+++.+|.+|...|++++|+..|+++++++|.+..+...+..+..+.++.+++ .+.|.++....
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~  505 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA-INHFQNALLLV  505 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhh
Confidence            999999999999999999999999999999999999988888887776666555443 34666666553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.74  E-value=8.3e-08  Score=94.20  Aligned_cols=109  Identities=19%  Similarity=0.125  Sum_probs=92.1

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|.+++.+........       ......++.++|.++..+|++++|+.++++++.
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4466788899999999999999999999998763320000       123456789999999999999999999999999


Q ss_pred             c--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       477 ~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      +        +|....+++.+|.+|..+|++++|+..|++++++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            8        67778899999999999999999999999999853

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.74  E-value=6.4e-08  Score=98.98  Aligned_cols=127  Identities=16%  Similarity=0.099  Sum_probs=101.7

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|.+++.+.+.....         .....++.++|.+|..+|++++|+.++++++.+
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            45567889999999999999999999999987764321         234567899999999999999999999999988


Q ss_pred             CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHH
Q 008400          478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       478 ~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~  533 (567)
                      .+..      ..+++++|.+|..+|++++|+..|++++++.+..      ..+...+..+....++..
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            7655      7889999999999999999999999999986554      334445555544444333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.72  E-value=1.5e-07  Score=97.97  Aligned_cols=124  Identities=12%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      ....+....+.+......|+|++|+..|+++|..........       +......+.|+|.+|..+|+|++|+.+|+++
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            334455556666666667899999999999999865432221       2446677999999999999999999999999


Q ss_pred             hcc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008400          475 LDL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTL  525 (567)
Q Consensus       475 l~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~  525 (567)
                      |.+     -|++   ...|+++|.+|..+|+|++|+..|++|+++     -|+++.+......+
T Consensus       367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            975     3444   578999999999999999999999999986     58887776655544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.71  E-value=2.2e-07  Score=100.68  Aligned_cols=147  Identities=12%  Similarity=0.043  Sum_probs=111.5

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCC-------------hHHHHHHH------HHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAK------ALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~e~~~~~~------~~~~~~~~nla~~~~  459 (567)
                      ...+...|..+++.|++++|+..|++++...+.+....             ++-....+      .....++++++.+|.
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (597)
T 2xpi_A          305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL  384 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            44566788999999999999999999998766543320             00011111      112456788899999


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~  539 (567)
                      +.|++++|+..++++++++|.+..+|+.++.+|...|++++|+..|++++++.|++..+...+..+....++..+. .+.
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~  463 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA-NEY  463 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH-HHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999998887777777776666555433 346


Q ss_pred             HHHhhHh
Q 008400          540 YGNMFAK  546 (567)
Q Consensus       540 ~~~~f~~  546 (567)
                      |.++...
T Consensus       464 ~~~~~~~  470 (597)
T 2xpi_A          464 LQSSYAL  470 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.69  E-value=4e-08  Score=101.19  Aligned_cols=143  Identities=13%  Similarity=0.138  Sum_probs=108.7

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|+..|.+++.+.+.....         .....++.++|.+|..+|++++|+.++++++.+
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999987753321         234557899999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       478 ~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      .+..      ..+++++|.+|..+|++++|+..|++++++.+..      ..+...+..+...+++..+ ....|++...
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~  371 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER-ALKYAEQHLQ  371 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence            7744      7899999999999999999999999999986543      2244445555554444433 3345555555


Q ss_pred             hhhhc
Q 008400          546 KMKSR  550 (567)
Q Consensus       546 ~~~~~  550 (567)
                      .....
T Consensus       372 ~~~~~  376 (411)
T 4a1s_A          372 LAXXX  376 (411)
T ss_dssp             HCCHH
T ss_pred             HHhhc
Confidence            44333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1.7e-07  Score=81.17  Aligned_cols=97  Identities=21%  Similarity=0.161  Sum_probs=83.7

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ..++++|.+++..++|++|+..++++++++|++   ..+++++|.+|..++++++|+.+|+++++++|++..+...+..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            447899999999999999999999999999998   89999999999999999999999999999999998888888887


Q ss_pred             HHHHHHHHHHHHHHHHHhhHh
Q 008400          526 KEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       526 ~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ...+++..+. ...|.+.+..
T Consensus       109 ~~~~~~~~~A-~~~~~~al~~  128 (148)
T 2dba_A          109 LEKLGRLDQA-VLDLQRCVSL  128 (148)
T ss_dssp             HHHHTCHHHH-HHHHHHHHHH
T ss_pred             HHHcCCHHHH-HHHHHHHHHc
Confidence            7766655543 3455555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=2.7e-07  Score=77.51  Aligned_cols=100  Identities=16%  Similarity=0.233  Sum_probs=85.5

Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ....++.++|.++...++++.|+..+++++..+|.+..+++.+|.++..++++++|+..++++++++|++..+...+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            34566889999999999999999999999999999999999999999999999999999999999999998888888877


Q ss_pred             HHHHHHHHHHHHHHHHHhhHh
Q 008400          526 KEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       526 ~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ....++..+. ...|.+....
T Consensus        90 ~~~~~~~~~A-~~~~~~~~~~  109 (131)
T 2vyi_A           90 LSSLNKHVEA-VAYYKKALEL  109 (131)
T ss_dssp             HHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHhCCHHHH-HHHHHHHHhc
Confidence            6666555433 3355555544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.68  E-value=8.5e-08  Score=94.77  Aligned_cols=122  Identities=18%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-  477 (567)
                      +..+...|..++..|+|++|+..|++++...+.+.           .....++.++|.+|..+|++++|+..+++++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677889999999999999999999999754321           334567899999999999999999999999887 


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHH
Q 008400          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------VKLEYKTLKEKMKE  531 (567)
Q Consensus       478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~------~~~~l~~~~~~~~~  531 (567)
                           .+....+++.+|.+|..+|++++|+..|++++++.|....      +...+..+....++
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                 4455789999999999999999999999999998665422      44445555444444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.68  E-value=1.1e-07  Score=93.98  Aligned_cols=140  Identities=16%  Similarity=0.117  Sum_probs=107.4

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|..++..|+|++|+..|++++...+....         ......++.++|.++..+|++++|+..+++++.
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  251 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556788899999999999999999999998765332         133456789999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      +.+..      ..+++.+|.+|..+|++++|+..|++++++.+..      ..+...+..+....++..+ ....|.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~  330 (338)
T 3ro2_A          252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ-AMHFAEKHL  330 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence            86655      7899999999999999999999999999986543      1244445555554444433 233555554


Q ss_pred             Hh
Q 008400          545 AK  546 (567)
Q Consensus       545 ~~  546 (567)
                      ..
T Consensus       331 ~~  332 (338)
T 3ro2_A          331 EI  332 (338)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.67  E-value=2.5e-07  Score=81.77  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      ....+.++|.+++..++|++|+..+.+++..+|.+..+++++|.++..+|++++|+.+|+++++++|.+..+...+..+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999988888888776


Q ss_pred             HHHHHHHHHHHHHHHHhhHh
Q 008400          527 EKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       527 ~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ..+++..++ ...|.+.+..
T Consensus        92 ~~~~~~~~A-~~~~~~a~~~  110 (166)
T 1a17_A           92 MALGKFRAA-LRDYETVVKV  110 (166)
T ss_dssp             HHTTCHHHH-HHHHHHHHHH
T ss_pred             HHhccHHHH-HHHHHHHHHh
Confidence            666555433 3355555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.66  E-value=1.5e-07  Score=93.40  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHH-hhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH-HHHHHHHHH
Q 008400          415 YARASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAY  492 (567)
Q Consensus       415 ~~~A~~~y~~al~-~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k-a~~~~a~a~  492 (567)
                      +++|+..|++|+. +.+...               .++.++|.++.++|++++|+..|+++++++|.++. +|+++|.++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNM---------------LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            3999999999999 455332               23555666666666666666666666666665554 566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          493 IQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       493 ~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ..+|++++|+..|++|++++|.+.
T Consensus       145 ~~~~~~~~A~~~~~~a~~~~p~~~  168 (308)
T 2ond_A          145 RRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHhcCHHHHHHHHHHHHhcCCCCH
Confidence            555666666666666655555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=3.4e-07  Score=95.24  Aligned_cols=127  Identities=8%  Similarity=-0.030  Sum_probs=100.2

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+......-..+..+|+|++|+..|++++..........       +......+.|+|.+|..+|+|++|+.+|.++|
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34455556666778889999999999999998754432221       24466779999999999999999999999998


Q ss_pred             cc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Q 008400          476 DL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       476 ~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~~~~  529 (567)
                      .+     -|++   ...++++|.+|..+|+|++|+..|++|+++     -|+++.....+..+....
T Consensus       357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            74     3444   578999999999999999999999999986     688887777665554433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.65  E-value=3.6e-07  Score=84.18  Aligned_cols=98  Identities=13%  Similarity=-0.000  Sum_probs=83.4

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      ....+.++|.++++.++|++|+..+++++.+.|.++                .+++++|.+|..+|+|++|+.+|+++++
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            445588999999999999999999999999999887                8999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       511 l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      ++|++..+...++.+...+++..++ ...|++.+.
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~  150 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEA-KENLYKAAS  150 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHH-HHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHH-HHHHHHHHH
Confidence            9999988888888777666655543 334555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.64  E-value=1.7e-07  Score=92.98  Aligned_cols=148  Identities=10%  Similarity=0.076  Sum_probs=75.3

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCC-CChH---------HHHHHHHH----------HHHHHhhHHHHHH-
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDE---------EKKQAKAL----------KVACNLNNAACKL-  459 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~e---------~~~~~~~~----------~~~~~~nla~~~~-  459 (567)
                      .+...|..+...|++++|...|+++++..+.+.. .-..         ..+.....          ...++...+.+.. 
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            3455666666777777777777777775543321 0000         00000000          0011222232222 


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI---DPD-NRDVKLEYKTLKEKMKEYNKK  535 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l---~P~-n~~~~~~l~~~~~~~~~~~~~  535 (567)
                      .+|++++|+..|+++++.+|+++.++..+|..+..+|++++|+..|++|++.   +|+ +..++..+.......+.....
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            2466666666666666666666666666666666666666666666666663   442 445555555554444433322


Q ss_pred             HHHHHHHhhHhhhh
Q 008400          536 EAKFYGNMFAKMKS  549 (567)
Q Consensus       536 e~~~~~~~f~~~~~  549 (567)
                       .+.++++....+.
T Consensus       261 -~~~~~~a~~~~p~  273 (308)
T 2ond_A          261 -LKVEKRRFTAFRE  273 (308)
T ss_dssp             -HHHHHHHHHHTTT
T ss_pred             -HHHHHHHHHHccc
Confidence             2455555554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.64  E-value=1e-07  Score=97.45  Aligned_cols=122  Identities=17%  Similarity=0.119  Sum_probs=99.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-  477 (567)
                      +..+...|..++..|+|++|+..|++++...+.+.           .....++.++|.+|..+|+|++|+.++++++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999854321           234567899999999999999999999999887 


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHH
Q 008400          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR------DVKLEYKTLKEKMKE  531 (567)
Q Consensus       478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~------~~~~~l~~~~~~~~~  531 (567)
                           .|....+++++|.+|..+|++++|+..|++++++.|...      .+...+..+....++
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence                 345578999999999999999999999999999876532      245555555555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=3.4e-07  Score=76.18  Aligned_cols=98  Identities=28%  Similarity=0.378  Sum_probs=83.5

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ..+++++|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999888777777766


Q ss_pred             HHHHHHHHHHHHHHHhhHh
Q 008400          528 KMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       528 ~~~~~~~~e~~~~~~~f~~  546 (567)
                      ..++..+ ....|.+++..
T Consensus        89 ~~~~~~~-A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDE-AIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHH-HHHHHHHHHHH
T ss_pred             HhcCHHH-HHHHHHHHHHh
Confidence            5554443 23455555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.62  E-value=1.9e-07  Score=91.62  Aligned_cols=96  Identities=15%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             HHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      ..+.++|.++++.|+|++|+..+++++.++|++..+++++|.+|..+|++++|+.+|++|++++|++..+...++.+...
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999998888888887776


Q ss_pred             HHHHHHHHHHHHHHhhH
Q 008400          529 MKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       529 ~~~~~~~e~~~~~~~f~  545 (567)
                      +++..++. +.|.+.+.
T Consensus        85 ~g~~~~A~-~~~~~al~  100 (281)
T 2c2l_A           85 MESYDEAI-ANLQRAYS  100 (281)
T ss_dssp             TTCHHHHH-HHHHHHHH
T ss_pred             cCCHHHHH-HHHHHHHH
Confidence            66555433 34555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=3.2e-07  Score=88.93  Aligned_cols=75  Identities=15%  Similarity=0.060  Sum_probs=46.7

Q ss_pred             HHHhhHHHHHHh----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008400          449 ACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKL  520 (567)
Q Consensus       449 ~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~~  520 (567)
                      .+++++|.+|..    .+++++|+.+++++++.  +++.+++++|.+|..    .+++++|+.+|++|++++  +..+..
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  150 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence            345666666666    66666666666666665  356666666666666    666666666666666654  334444


Q ss_pred             HHHHHHH
Q 008400          521 EYKTLKE  527 (567)
Q Consensus       521 ~l~~~~~  527 (567)
                      .+..+..
T Consensus       151 ~lg~~~~  157 (273)
T 1ouv_A          151 ILGSLYD  157 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.61  E-value=1.4e-08  Score=103.78  Aligned_cols=85  Identities=12%  Similarity=0.264  Sum_probs=73.1

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008400          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (567)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~  244 (567)
                      ..+..||.|++||++.. +|+.|+++  .++.|.+|.|.++|||+++|.||+.|+++.|.||....||..+         
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~---------  228 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN---------  228 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT---------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC---------
Confidence            35789999999999995 89999876  7899999999999999999999999999999997334677433         


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008400          245 VPPNATLQIALELVSWKT  262 (567)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (567)
                       .++.+++|+|+|..+..
T Consensus       229 -laGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          229 -LKGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             -TSSCEEEECCCEEEEEE
T ss_pred             -CCCCeEEEEEEEEEEEc
Confidence             36889999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.60  E-value=2.3e-07  Score=78.07  Aligned_cols=98  Identities=21%  Similarity=0.253  Sum_probs=82.0

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-------RDVKL  520 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n-------~~~~~  520 (567)
                      ...++++|.++...++|++|+..+.+++..+|.++.+++++|.+|..+|++++|+.+|++++++.|.+       ..+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999998877       66777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          521 EYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       521 ~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      .+..+....++..+. ...|.+.+..
T Consensus        84 ~la~~~~~~~~~~~A-~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDA-IHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHH-HHHHHHHHHh
Confidence            777766665554433 3455555553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.59  E-value=1.3e-08  Score=107.93  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=87.7

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..+++.|+|++|+..|++|+++.+...               .+++++|.+|.++|++++|+..++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------------KGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56678899999999999999999999999866432               348999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCC
Q 008400          479 SRNVKALYRRAQA--YIQMADLDLAEFDIK-----------KALEIDPDN  515 (567)
Q Consensus       479 p~~~ka~~~~a~a--~~~l~~~~~A~~~~~-----------~al~l~P~n  515 (567)
                      |++..++++++.+  +..++++++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999998  899999999999999           888888764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.58  E-value=1.4e-07  Score=99.07  Aligned_cols=120  Identities=15%  Similarity=0.072  Sum_probs=95.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--cCHHHHHHHHHHHhc
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKLCTKVLD  476 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--~~~~~Ai~~~~~al~  476 (567)
                      +..+.+.|..++..|+|++|+..|++++.+.+.......       .....++.++|.++++.  ++|++|+.+|++|++
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            345668899999999999999999999998765432110       01123477788777765  479999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQ---MADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ++|+++.+++.+|.++..   .+++++|+..|++|++++|++..+...+...
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~  218 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK  218 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence            999999999999988654   5777899999999999999998877766644

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=4e-07  Score=88.37  Aligned_cols=109  Identities=16%  Similarity=0.074  Sum_probs=81.4

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC--
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--  478 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~--  478 (567)
                      ....+|..+++.++|.+|+..|+.++..-.             ..+...+++++|.++..+|++++|+..|++++.-.  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-------------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-------------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-------------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            456777788888888888888875543310             01223467888888888888888888888887543  


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          479 SR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       479 p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      |. .+.+++++|.|+..+|+.++|+..|++++..+|+ ..+...|.
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            54 5678888888888888888888888888888888 66665553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.55  E-value=2.5e-07  Score=81.36  Aligned_cols=88  Identities=11%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      .+++.|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++.++...++.+...
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999875          599999999999999999999888888776


Q ss_pred             HH----------HHHHHHHHHHHHhhHh
Q 008400          529 MK----------EYNKKEAKFYGNMFAK  546 (567)
Q Consensus       529 ~~----------~~~~~e~~~~~~~f~~  546 (567)
                      +.          ..-++..+.|++...-
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            64          2333344566666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.55  E-value=3.6e-07  Score=98.72  Aligned_cols=123  Identities=10%  Similarity=-0.036  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcH-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccC--------
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------  463 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~--------  463 (567)
                      ..|++.-.........+.+.++| ++|+..|.+++...|...               .+|++++.+..++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~---------------taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHhcccccchhhhh
Confidence            34444444445555556666766 678999999999987654               348999999999988        


Q ss_pred             --HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          464 --YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       464 --~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                        +++|+..++++++.+|++..||+.|+-++..++  ++++|++++.++++++|.|..++...+.+...+.
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence              999999999999999999999999999999999  7799999999999999999988888887766655

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.53  E-value=7.2e-07  Score=73.19  Aligned_cols=79  Identities=25%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~-------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      ++.+|..+++.++|..|+..+++|++..       +.....+.++|.||..+|+++.|+..+++|++++|++..+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            7799999999999999999999999863       345788999999999999999999999999999999988766666


Q ss_pred             HHHHHH
Q 008400          524 TLKEKM  529 (567)
Q Consensus       524 ~~~~~~  529 (567)
                      .+...+
T Consensus        88 ~~~~~~   93 (104)
T 2v5f_A           88 YFEYIM   93 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.53  E-value=6.3e-07  Score=96.82  Aligned_cols=116  Identities=13%  Similarity=0.010  Sum_probs=103.8

Q ss_pred             HhhhhhhhhHHHhcCc----------HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc--CHHH
Q 008400          399 AGKKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQ  466 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~~~~  466 (567)
                      ...+..+|..+...++          |++|+..|.++++..+.+..               +|++++.+..+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------------aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcccccHHH
Confidence            4566777888877777          99999999999998776543               4899999999999  7899


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      |+..|++++++||.|..||+.|+.++..++ .+++|++++.++++++|.|..++.....+...+
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999999999999999 999999999999999999999999888876664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.52  E-value=8.1e-07  Score=81.36  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=91.2

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+...|..++..|+|++|+..|.+++.+.......        ......+++++|.++..+|++++|+.++++++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999999987644322        12355678999999999999999999999998


Q ss_pred             ccCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          476 DLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       476 ~~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      .+.+  .+    ..++.++|.++..+|++++|+..+++++++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            7632  22    35678999999999999999999999998743

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.52  E-value=4e-07  Score=85.12  Aligned_cols=128  Identities=14%  Similarity=0.004  Sum_probs=92.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc-----------cCCC--ChHHH-----HHHHHHHHHHHhhHHHHHHh
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY-----------DTSF--GDEEK-----KQAKALKVACNLNNAACKLK  460 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~-----------~~~~--~~e~~-----~~~~~~~~~~~~nla~~~~k  460 (567)
                      +..+...|..++..+++.+|+..|++|++....           ....  ..++-     ...+.-...+++|+|.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            456677788888888888888888887764211           0000  01110     01111234568899999988


Q ss_pred             ----ccCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          461 ----LKDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       461 ----~~~~~~Ai~~~~~al~~~p--~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                          .+++.+|+.++.++++..+  .++.+++++|.+|..    .+++++|+.+|++|+++ |.+..+...|..+..
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence                8899999999999999887  458999999999999    88999999999999998 566666666666644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.50  E-value=1.3e-07  Score=79.25  Aligned_cols=87  Identities=11%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             hccCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDL---DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~---~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                      .+|++++|+..+++++++   +|+++.+++++|.+|..+|+|++|+..|+++++++|++..+...+..+...+++..+..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999988887777666544


Q ss_pred             HHHHHHhhHhh
Q 008400          537 AKFYGNMFAKM  547 (567)
Q Consensus       537 ~~~~~~~f~~~  547 (567)
                       ..|.+.+...
T Consensus        82 -~~~~~al~~~   91 (117)
T 3k9i_A           82 -ELLLKIIAET   91 (117)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHhC
Confidence             4566665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.49  E-value=1.3e-06  Score=84.67  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             HHHHhhHHHHHHh----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                      ..+++++|.+|..    .+++++|+.+++++++.+  +..+++++|.+|..    .+++++|+.+|+++++.+  +..+.
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  185 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGC  185 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            3457888999988    889999999999998875  67888899999888    889999999999998874  45566


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHhhH
Q 008400          520 LEYKTLKEK----MKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       520 ~~l~~~~~~----~~~~~~~e~~~~~~~f~  545 (567)
                      ..+..+...    .++..+ ....|++...
T Consensus       186 ~~lg~~~~~g~~~~~~~~~-A~~~~~~a~~  214 (273)
T 1ouv_A          186 FNAGNMYHHGEGATKNFKE-ALARYSKACE  214 (273)
T ss_dssp             HHHHHHHHHTCSSCCCHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccHHH-HHHHHHHHHh
Confidence            666666555    433332 2334555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.49  E-value=4.1e-07  Score=92.98  Aligned_cols=96  Identities=23%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhc----------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLD----------------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~----------------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                      .+.++|.++++.++|++|+..|+++|+                ++|.+..+|+++|.+|+.+++|++|+.+|++|++++|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            477999999999999999999999998                7888899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          514 DNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       514 ~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      ++..+...++.+...+++..++ ...|++.+..
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA-~~~l~~Al~l  336 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQA-LADLKKAQEI  336 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHH-HHHHHHHHHh
Confidence            9988888888877776665543 3355555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.47  E-value=9e-07  Score=87.56  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=77.4

Q ss_pred             HhcCcH-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc--CHHHHHHHHHHHhccCCCCHHHHH
Q 008400          410 FKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALY  486 (567)
Q Consensus       410 ~~~g~~-~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~~~~Ai~~~~~al~~~p~~~ka~~  486 (567)
                      .+.++| ++|+..+.++|.+.|....               ++++++.+...++  ++++++..++++|..+|.+..+|+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~t---------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~  107 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYT---------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN  107 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHH---------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence            344454 5777777777777665432               3667777777777  777777777777777777777777


Q ss_pred             HHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 008400          487 RRAQAY----IQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-KKEAKFYGNMF  544 (567)
Q Consensus       487 ~~a~a~----~~l---~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~-~~e~~~~~~~f  544 (567)
                      .|+.++    ..+   +++++++.++.++++.+|+|..++...+.+...+.... ..+-..+.+++
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i  173 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI  173 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            777777    555   66777777777777777777666666666555544322 13334444444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.46  E-value=8.9e-07  Score=72.65  Aligned_cols=83  Identities=19%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+.+.|..+|+.++|..|+.-|+.|++..+......        .....++.++|.|+.++|+++.|+..++++++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            45567899999999999999999999999875432110        1244668999999999999999999999999999


Q ss_pred             CCCHHHHHHHH
Q 008400          479 SRNVKALYRRA  489 (567)
Q Consensus       479 p~~~ka~~~~a  489 (567)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999988887

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.44  E-value=4.8e-07  Score=84.60  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=81.2

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc----CHHHHHHHHHHHhccCCCC
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK----DYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~----~~~~Ai~~~~~al~~~p~~  481 (567)
                      ...++..|..-.....|.+|+.++....          +.-...+++++|.+|.. +    ++++|+.+++++++  +.+
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~----------~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~   84 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAA----------AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS   84 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH----------HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHH----------HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC
Confidence            3444444554444555666666654321          11234568899999998 7    89999999999965  678


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEK  528 (567)
Q Consensus       482 ~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~--n~~~~~~l~~~~~~  528 (567)
                      +.+++++|.+|..    .+++++|+.+|++|++..|.  +..+...|..+...
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            9999999999998    89999999999999999884  35677777666544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.44  E-value=1.1e-06  Score=70.42  Aligned_cols=69  Identities=19%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             HHHhhHHHHHHhccC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008400          449 ACNLNNAACKLKLKD---YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       449 ~~~~nla~~~~k~~~---~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      .++..+|.+++..++   ..+|...++++|.+||+++++++.+|.+++..|+|++|+..++++++.+|.+..
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            346778888876655   799999999999999999999999999999999999999999999999999543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.42  E-value=2e-06  Score=85.08  Aligned_cols=113  Identities=12%  Similarity=-0.136  Sum_probs=74.0

Q ss_pred             HhhhhhhhhHHHhcC--cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHH----Hhc---cCHHHHHH
Q 008400          399 AGKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKL---KDYKQAEK  469 (567)
Q Consensus       399 a~~~~~~G~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~----~k~---~~~~~Ai~  469 (567)
                      ...+..+|..+...+  ++++|+..+..+|...|.+...               ++.++.+.    .++   +++++++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a---------------W~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI---------------WNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH---------------HHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH---------------HHHHHHHHHHHHHhccccCCHHHHHH
Confidence            456678888888888  9999999999999987765432               44555444    344   45666666


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLD--LAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~--~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      .|+++|+.+|.|..+|+.|+.++..++.++  ++++.+.++++.+|.|-.++.....+.
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll  190 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL  190 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            666666666666666666666666666655  666666666666666655555444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.40  E-value=2.7e-06  Score=85.18  Aligned_cols=121  Identities=15%  Similarity=0.042  Sum_probs=103.4

Q ss_pred             hcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhccCCCCHHHHHHHH
Q 008400          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRA  489 (567)
Q Consensus       411 ~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~~~ka~~~~a  489 (567)
                      +.....+|+..+.++|.+.|...               .++++++.+...++ .+++++..++++|..+|++..+|+.|+
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~~y---------------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPAHY---------------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhCchhH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34455789999999999988654               34889999999999 599999999999999999999999999


Q ss_pred             HHHHhc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHh
Q 008400          490 QAYIQM-A-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-------KKEAKFYGNMFAK  546 (567)
Q Consensus       490 ~a~~~l-~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~-------~~e~~~~~~~f~~  546 (567)
                      .++..+ + +++++++.+.++++++|+|..++...+.+...+....       ..+-..+.++...
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            999998 8 9999999999999999999999988888877776655       3566666666653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.39  E-value=3.1e-06  Score=85.87  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=83.3

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+...|..++..|+|++|...|.+++...+.....         .....+++++|.++..+|++.+|+..+.+++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44566778888888999999999999999876654321         223455778888888888888888888888876


Q ss_pred             C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          478 D--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       478 ~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                      .        |....++.++|.++..+|++++|+..+++++.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            4        334567778888888888888888888888888765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.36  E-value=2.4e-06  Score=85.15  Aligned_cols=111  Identities=9%  Similarity=-0.061  Sum_probs=71.9

Q ss_pred             hhhhHHHhcCcHH-HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccC----------HHHHHHHHH
Q 008400          404 EQGNTLFKAGKYA-RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEKLCT  472 (567)
Q Consensus       404 ~~G~~~~~~g~~~-~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~----------~~~Ai~~~~  472 (567)
                      +.-....+.|+|. +|+..+.++|.+.|....               +++.++.+...++.          +++++..++
T Consensus        34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt---------------aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~   98 (331)
T 3dss_A           34 QAVFQKRQAGELDESVLELTSQILGANPDFAT---------------LWNCRREVLQHLETEKSPEESAALVKAELGFLE   98 (331)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH---------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH---------------HHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            3333444678876 799999999998876442               25555555555444          566666666


Q ss_pred             HHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          473 KVLDLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      .+|..+|.+..+|+.|+.++..++  .+++++.++.++++++|.|..++...+.+...+
T Consensus        99 ~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l  157 (331)
T 3dss_A           99 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            666666666666666666666666  366666666666666666666665555554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.33  E-value=7.1e-07  Score=80.53  Aligned_cols=70  Identities=13%  Similarity=0.025  Sum_probs=53.1

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      ++++|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++| +......
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~   78 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSL   78 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence            567777777788888888888888887888888888888888888888888877777777777 6544433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.30  E-value=3.4e-06  Score=70.67  Aligned_cols=103  Identities=13%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHH---HHHHHHHHhccC-C-CCHHHHHH
Q 008400          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ---AEKLCTKVLDLD-S-RNVKALYR  487 (567)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~---Ai~~~~~al~~~-p-~~~ka~~~  487 (567)
                      .....+.+.|.+++...+  .             ...+.+|+|.|+.+.++...   +|..+..++..+ | .+-.++|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~--~-------------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~   79 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS--V-------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC--C-------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCC--C-------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            344556666776654321  1             12447899999999887766   999999999877 5 56799999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       488 ~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +|.+++++|+|++|+.+++..|+++|+|..+..+...+..++.
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888777766553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.29  E-value=1.1e-05  Score=80.26  Aligned_cols=100  Identities=13%  Similarity=0.020  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc--CHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 008400          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (567)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~  492 (567)
                      +.+++..+..++...|.+.               .++++++.+..+++  .|++++..|+++|+.+|.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~~~PKny---------------~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7899999999998877544               34889999999998  499999999999999999999999999999


Q ss_pred             HhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          493 IQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       493 ~~l~~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      ..++. ++++++++.++++.+|.|..++.....+...+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999 69999999999999999999988888776665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.29  E-value=4.4e-06  Score=72.28  Aligned_cols=96  Identities=11%  Similarity=-0.060  Sum_probs=77.4

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh----ccCHHHHHHHHHHHhccCCC
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .|..++..+.+.+|++.|++|.+.-.                 ..+++|+|.+|..    .+++.+|+.+++++.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            66777777788889999999887521                 2447899999998    88999999999999876  6


Q ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          481 NVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       481 ~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      ++.+++++|.+|..    .+++++|+.+|++|.+..  +..+...
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~  134 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI  134 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence            78999999999999    899999999999998873  4444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.28  E-value=1.3e-06  Score=70.93  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=65.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+...|..++..|+|++|+..|+++++..+....               +++++|.||.++|++++|+..+++++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------------TYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            456788999999999999999999999999876553               48999999999999999999999999986


Q ss_pred             CC--CHHHHHHHHHHHH
Q 008400          479 SR--NVKALYRRAQAYI  493 (567)
Q Consensus       479 p~--~~ka~~~~a~a~~  493 (567)
                      |.  +..+...+..++.
T Consensus        72 ~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            53  3444444444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.23  E-value=2.3e-06  Score=82.99  Aligned_cols=130  Identities=11%  Similarity=-0.027  Sum_probs=99.4

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC-
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-  481 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-  481 (567)
                      ...+..+...|+|++|.+.|..++...+.               .. +++++|.++++.++|.+|+.+++.++...++. 
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~  169 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL  169 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence            34567888899999999999877653321               12 47899999999999999999999888763221 


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          482 -VKALYRRAQAYIQMADLDLAEFDIKKALEID--PD-NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       482 -~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~-n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                       ..+++++|.++..+|++++|+.+|++++.-.  |. ..++...+..+...+.+..+ ....|+++...-..
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de-A~~~l~~a~a~~P~  240 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA-AVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCc
Confidence             4589999999999999999999999998654  55 44566677777666665543 44577777776444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.23  E-value=1.3e-06  Score=85.74  Aligned_cols=112  Identities=12%  Similarity=-0.049  Sum_probs=88.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCC-------------CChHHHHHH------HHHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~e~~~~~------~~~~~~~~~nla~~~~  459 (567)
                      +..+...|..+...|++++|+..|++++...+....             ...+.....      ......+++++|.++.
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            566788889999999999999999888765442110             000011111      1123567899999999


Q ss_pred             hccCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      .+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999998  99999999999999999999999999985

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.22  E-value=6.9e-06  Score=68.06  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       466 ~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      .|+..++++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+....++..+. ...|.+.+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA-RQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998888888887776655543 345555554


Q ss_pred             h
Q 008400          546 K  546 (567)
Q Consensus       546 ~  546 (567)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.17  E-value=9.2e-06  Score=86.00  Aligned_cols=96  Identities=19%  Similarity=0.078  Sum_probs=76.1

Q ss_pred             HHHHhhHHHHHHh----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---CH
Q 008400          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD---NR  516 (567)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~---n~  516 (567)
                      ..+++++|.+|..    .+++++|+.+++++++.  .++.+++++|.+|..    .+++++|+.+|++|++.+|+   +.
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  440 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE  440 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence            4568899999999    89999999999999986  479999999999999    89999999999999999955   76


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          517 DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       517 ~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      .+...+..+...   ......++.++.|.+..
T Consensus       441 ~a~~~l~~~~~~---~~~~a~~~a~~~~~~~~  469 (490)
T 2xm6_A          441 NRNITEKKLTAK---QLQQAELLSQQYIEKYA  469 (490)
T ss_dssp             HHHHHHTTSCHH---HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCHh---HHHHHHHHHHHHHHHHH
Confidence            676666665332   22223345666776643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.17  E-value=4.2e-06  Score=88.36  Aligned_cols=113  Identities=12%  Similarity=0.015  Sum_probs=92.9

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+.+.|..+..+|+|++|+..|+++|..........       +......++|+|..|..+|+|++|+..+.+||
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999865433221       24466679999999999999999999999998


Q ss_pred             cc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          476 DL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       476 ~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ++     -|++   .+.+-+++.++..++.|++|...|.++.+-.-+|
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            74     4555   4667789999999999999999999987644334

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.16  E-value=6.1e-06  Score=82.61  Aligned_cols=116  Identities=9%  Similarity=-0.126  Sum_probs=101.5

Q ss_pred             HhhhhhhhhHHHhcC-cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-c-CHHHHHHHHHHHh
Q 008400          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-K-DYKQAEKLCTKVL  475 (567)
Q Consensus       399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~-~~~~Ai~~~~~al  475 (567)
                      ...+..++..+...+ .+++|+..+..+|...+.+..               +++.++.+..++ + ++++++..|+++|
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            345677788888878 599999999999988776543               488999999888 7 9999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLD--------LAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~--------~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      +.+|.|..||+.|+-++..++.++        ++++.++++++.+|.|-.+......+...+
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999888        999999999999999998888887775544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.14  E-value=7.7e-06  Score=87.54  Aligned_cols=148  Identities=10%  Similarity=0.027  Sum_probs=81.7

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCC-C-C--------hHHHHHHHHHHH----------HHHhhHHH-HHH
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-F-G--------DEEKKQAKALKV----------ACNLNNAA-CKL  459 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~-~--------~e~~~~~~~~~~----------~~~~nla~-~~~  459 (567)
                      .+...|..+.+.|++++|...|++++...+.+.. . .        ....+.......          .++...+. ++.
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~  402 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  402 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3445666777788888888888888876543210 0 0        000000001100          11122222 233


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD----VKLEYKTLKEKMKEYNKK  535 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~----~~~~l~~~~~~~~~~~~~  535 (567)
                      .+|++++|+..++++++.+|+++.++...+..+..+|++++|+..|++|+...|.++.    ++..+.......+.. +.
T Consensus       403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~-~~  481 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL-AS  481 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH-HH
T ss_pred             HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH-HH
Confidence            5677777777777777777777777777777777777777777777777776554432    444444443333322 23


Q ss_pred             HHHHHHHhhHhhhh
Q 008400          536 EAKFYGNMFAKMKS  549 (567)
Q Consensus       536 e~~~~~~~f~~~~~  549 (567)
                      ..+.++++...++.
T Consensus       482 ~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          482 ILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHCch
Confidence            34456666666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.11  E-value=8.8e-06  Score=87.08  Aligned_cols=129  Identities=15%  Similarity=0.093  Sum_probs=64.1

Q ss_pred             HhhhhhhhhHHHh-------cCcHH-------HHHHHHHHHHH-hhhccCCC------------ChHH-HHHHHHH----
Q 008400          399 AGKKKEQGNTLFK-------AGKYA-------RASKRYEKAVK-YIEYDTSF------------GDEE-KKQAKAL----  446 (567)
Q Consensus       399 a~~~~~~G~~~~~-------~g~~~-------~A~~~y~~al~-~~~~~~~~------------~~e~-~~~~~~~----  446 (567)
                      ...+...|..+..       .|+++       +|+..|++|+. ..|.....            ..++ ....+..    
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~  351 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  351 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence            3445566776665       68887       99999999997 55532211            0000 0000000    


Q ss_pred             ---HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400          447 ---KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA-YIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (567)
Q Consensus       447 ---~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  522 (567)
                         ...+|.+++.++.++|++++|+..+++|++..|.+...++..+.. +..+|++++|+..|+++++..|++..+...+
T Consensus       352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~  431 (530)
T 2ooe_A          352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY  431 (530)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHH
Confidence               012344444444444455555555555554444444444433332 2235555555555555555555555555444


Q ss_pred             HHHHH
Q 008400          523 KTLKE  527 (567)
Q Consensus       523 ~~~~~  527 (567)
                      ..+..
T Consensus       432 ~~~~~  436 (530)
T 2ooe_A          432 IDYLS  436 (530)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            44433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.04  E-value=3.3e-05  Score=78.21  Aligned_cols=108  Identities=9%  Similarity=0.003  Sum_probs=89.6

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      ....+..+...|..++..|++++|+..+.+++...+...          ......+++++|.++...|++++|+..+.++
T Consensus        10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   79 (373)
T 1hz4_A           10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQT   79 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            344566677889999999999999999999998764221          1234556889999999999999999999999


Q ss_pred             hccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          475 LDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       475 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      +.+.+..      ..+++++|.++..+|++++|+..|++++++.
T Consensus        80 l~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  123 (373)
T 1hz4_A           80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  123 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9876533      3457899999999999999999999999985

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=98.01  E-value=5.2e-06  Score=85.91  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=73.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      .+..||.|.|+|+++ .||..|+++..  .++.|.+|.+.  + |+++|.||++|+.++|.+.+              +|
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG  213 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG  213 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence            467899999999988 59999998754  68889999887  3 99999999999999999855              35


Q ss_pred             CcEEEEEEEEEEeeccccccccceeeee
Q 008400          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (567)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~~~i  159 (567)
                      .+..|.|+|.+++......-+..+++.+
T Consensus       214 k~a~F~VtV~~Ik~~~lPEldDEfak~~  241 (433)
T 3gty_X          214 KKYTYKLEVEEVYKRTLPEIGDELAKSV  241 (433)
T ss_dssp             EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred             CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence            8999999999999876666666666644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.95  E-value=4.7e-05  Score=87.54  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC-
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-  479 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p-  479 (567)
                      .+...|..++..|+|++|+..|.+|-                       .|..+|.|+.++|+|++|++.+.+|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45679999999999999999999873                       188999999999999999999999955433 


Q ss_pred             ------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          480 ------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       480 ------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                                              .++..+..++..|...|.|++|+..|+++|.++|.+.....++..+..+.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence                                    134456677888999999999999999999999999888888877755543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.95  E-value=5.1e-05  Score=63.62  Aligned_cols=82  Identities=16%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             HHHhhHHHHHHhccC---HHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       449 ~~~~nla~~~~k~~~---~~~Ai~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      ...+|+|-|..+.++   ...+|..+...++.+|. .-..+|.+|.+++++|+|++|+.+++.+|+++|+|..+..+...
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            346788888877764   56799999999988884 47899999999999999999999999999999999988888777


Q ss_pred             HHHHHH
Q 008400          525 LKEKMK  530 (567)
Q Consensus       525 ~~~~~~  530 (567)
                      +..++.
T Consensus       121 Ie~ki~  126 (134)
T 3o48_A          121 VEDKIQ  126 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.94  E-value=9.9e-05  Score=62.69  Aligned_cols=81  Identities=16%  Similarity=0.214  Sum_probs=68.9

Q ss_pred             HHHhhHHHHHHhccC---HHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008400          449 ACNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (567)
Q Consensus       449 ~~~~nla~~~~k~~~---~~~Ai~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  524 (567)
                      ...+|+|-|..+..+   -.++|..++..+..+|. .-..+|.+|.+++++|+|++|+.+++..|+++|+|..+..+...
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            346788888888764   45799999999998884 57899999999999999999999999999999999888887777


Q ss_pred             HHHHH
Q 008400          525 LKEKM  529 (567)
Q Consensus       525 ~~~~~  529 (567)
                      +..++
T Consensus       120 Ie~~i  124 (144)
T 1y8m_A          120 VEDKI  124 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.91  E-value=6.2e-05  Score=64.89  Aligned_cols=94  Identities=16%  Similarity=0.030  Sum_probs=79.8

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .+++.+|+..|++|.+...  ..               ++  +|.+|...+.+++|+.+++++.+.  .++.+++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~---------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MF---------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TT---------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hh---------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3678999999999997642  11               13  999999999999999999999986  789999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       492 ~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      |..    .+++++|+.+|++|.+.  .+..+...|..+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999    89999999999999987  677777777777554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.88  E-value=3.9e-05  Score=78.87  Aligned_cols=106  Identities=17%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc----
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----  476 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----  476 (567)
                      .+...|+.++..|+|++|+..|.++        +.               |.++|.|+.++|+|++|++.+.++..    
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~~~~~W  180 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKANSTRTW  180 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcCCchhH
Confidence            4455555555555555555555544        11               45555555555555555555555511    


Q ss_pred             ----------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          477 ----------------------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       477 ----------------------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                                            +. .++.-+..+..+|...|++++|+..|++++.+++.+..+..++..+..+.+
T Consensus       181 k~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          181 KEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence                                  10 223334456678999999999999999999999999888888877755543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.82  E-value=0.00015  Score=76.66  Aligned_cols=93  Identities=17%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             HhhhhhhhhHHHh----cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh----ccCHHHHHHH
Q 008400          399 AGKKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKL  470 (567)
Q Consensus       399 a~~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k----~~~~~~Ai~~  470 (567)
                      +..+...|..++.    .+++.+|+..|++|++...                 ..+++++|.+|..    .+++++|+.+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY-----------------TPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            4556677777777    7888888888888876411                 1124445555554    4555555555


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 008400          471 CTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALE  510 (567)
Q Consensus       471 ~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~  510 (567)
                      +.++.+.  .++.+++++|.+|..    .+++++|+.+|++|.+
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            5555442  344555555555544    4455555555555444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.78  E-value=0.00013  Score=63.38  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             HhhhhhhhhHHHhcC---cHHHHHHHHHHHHHhh-hccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       399 a~~~~~~G~~~~~~g---~~~~A~~~y~~al~~~-~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      .+..++.|..+.+..   ++++|+..++..++.. |              .....+++|+|..|+++++|.+|+++|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--------------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--------------cchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            355677788888877   7889999999988754 2              134567899999999999999999999999


Q ss_pred             hccCCCCHHHHHHHHHH
Q 008400          475 LDLDSRNVKALYRRAQA  491 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a  491 (567)
                      |+++|+|..|..-+-.+
T Consensus        98 L~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           98 LQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHH
Confidence            99999998887655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.00015  Score=74.68  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=91.4

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCC------------------CChHHHHH-HH---------
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS------------------FGDEEKKQ-AK---------  444 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~------------------~~~e~~~~-~~---------  444 (567)
                      .........+.+.|..+++.|+|++|+..|.+++.+.+....                  ...+.... .+         
T Consensus        49 ~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  128 (434)
T 4b4t_Q           49 KRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE  128 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            344455667889999999999999999999998876543211                  01111111 11         


Q ss_pred             ---HHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008400          445 ---ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       445 ---~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  513 (567)
                         .+...++.++|.+|..+|+|.+|+..+.+++..      .+....++...+++|..+++|++|...|++++.+.+
T Consensus       129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence               123567889999999999999999999998765      233367999999999999999999999999998753

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.75  E-value=8.8e-05  Score=77.70  Aligned_cols=121  Identities=17%  Similarity=0.027  Sum_probs=74.8

Q ss_pred             hhhhhhhHHHhcC---cHHHHHHHHHHHHHhhhccCCC--------------ChHHHHHHH------HHHHHHHhhHHHH
Q 008400          401 KKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAK------ALKVACNLNNAAC  457 (567)
Q Consensus       401 ~~~~~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~--------------~~e~~~~~~------~~~~~~~~nla~~  457 (567)
                      .+...|..+.+.|   ++.+|+..|++|+...+.....              ..+......      .-...+++++|.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4567788888888   9999999999998764432210              000001111      1123346666766


Q ss_pred             -H--HhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          458 -K--LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----DLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       458 -~--~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~-----~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                       +  ...+++++|+.+++++++.  .++.+++++|.+|. .|     ++++|+.+|++|.   |.+..+...+..+..
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence             3  3566777777777777653  36777777777766 44     7777777777776   666666666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.75  E-value=0.00013  Score=70.07  Aligned_cols=86  Identities=15%  Similarity=0.003  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc-----cCHHHHHHHHHHHhccCCCC-HHHHHHHH
Q 008400          416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----KDYKQAEKLCTKVLDLDSRN-VKALYRRA  489 (567)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----~~~~~Ai~~~~~al~~~p~~-~ka~~~~a  489 (567)
                      ..|....++|+++.+.             -+...+|.-+|..|.+.     |+.++|..++++||+++|+. ..+++..|
T Consensus       180 ~~A~a~lerAleLDP~-------------~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA  246 (301)
T 3u64_A          180 HAAVMMLERACDLWPS-------------YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYA  246 (301)
T ss_dssp             HHHHHHHHHHHHHCTT-------------HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-------------cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence            4555555666655543             12345788999999996     99999999999999999975 99999999


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHhCCC
Q 008400          490 QAYIQM-ADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       490 ~a~~~l-~~~~~A~~~~~~al~l~P~  514 (567)
                      ..++.. +++++|...+++|+..+|.
T Consensus       247 ~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          247 DALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999885 9999999999999999877

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.00011  Score=75.88  Aligned_cols=64  Identities=9%  Similarity=-0.057  Sum_probs=55.4

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLD------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      ..++.+++.++...++++.|+..|.+++...      +...+++.++|.+|..+|+|++|+..+++++..
T Consensus        95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            3456788999999999999999999998753      233789999999999999999999999999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.70  E-value=0.00027  Score=61.74  Aligned_cols=117  Identities=13%  Similarity=0.109  Sum_probs=87.4

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC-
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-  478 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~-  478 (567)
                      .+++....++..+.|+.|+-.+..++.+...+... +       -.....++..+|..++..++|.+|...|++||... 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999887655432 2       13455668899999999999999999999997642 


Q ss_pred             --CCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          479 --SRN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       479 --p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                        +.+                      ...-|+.|.||..++++++|+..++..-. .-.+..+.-.|+++
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence              111                      25779999999999999999998775321 11344454445443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.69  E-value=0.00036  Score=69.81  Aligned_cols=112  Identities=13%  Similarity=-0.007  Sum_probs=81.1

Q ss_pred             hhhhHHHh---cCcHHHHHHHHHHHHHhhhccCCC-----------------ChHHHHHHHHH------------HHHHH
Q 008400          404 EQGNTLFK---AGKYARASKRYEKAVKYIEYDTSF-----------------GDEEKKQAKAL------------KVACN  451 (567)
Q Consensus       404 ~~G~~~~~---~g~~~~A~~~y~~al~~~~~~~~~-----------------~~e~~~~~~~~------------~~~~~  451 (567)
                      -+|..++.   ...+.+|+.+|++|+++.|.....                 ...........            ...+|
T Consensus       201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~  280 (372)
T 3ly7_A          201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY  280 (372)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence            34444443   344689999999999987753211                 11111111111            11234


Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      .-+|..++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|.+|+.++|...
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            4567777788999999999999999996 477889999999999999999999999999999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.61  E-value=0.00019  Score=82.57  Aligned_cols=107  Identities=12%  Similarity=-0.027  Sum_probs=82.4

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCC--hHHHHHH-----HHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQA-----KALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--~e~~~~~-----~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      +.|..+...|.|++|+..|+++-..........  -...+..     +-....+|+++|.++.+.|+|++|+..|.+|  
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            348889999999999999999753322100000  0011111     1123568999999999999999999999886  


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                         +++.+|++.|.++..+|+|++|+++|..|.+.+++.
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence               789999999999999999999999999999988553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.59  E-value=0.00023  Score=74.56  Aligned_cols=74  Identities=20%  Similarity=0.070  Sum_probs=63.2

Q ss_pred             HHHHhhHHHHHHhcc-----CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHH
Q 008400          448 VACNLNNAACKLKLK-----DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDV  518 (567)
Q Consensus       448 ~~~~~nla~~~~k~~-----~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~  518 (567)
                      ..+++|+|.+|. .|     ++.+|+.+|.++.   +.++.+++++|.+|..    ..++++|+.+|++|.+.  .+..+
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A  356 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA  356 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence            456889999998 55     9999999999999   8999999999999988    45999999999999975  45557


Q ss_pred             HHHHHHHHH
Q 008400          519 KLEYKTLKE  527 (567)
Q Consensus       519 ~~~l~~~~~  527 (567)
                      ...|..+..
T Consensus       357 ~~~Lg~~y~  365 (452)
T 3e4b_A          357 DFAIAQLFS  365 (452)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.42  E-value=0.00029  Score=69.15  Aligned_cols=99  Identities=12%  Similarity=0.024  Sum_probs=77.9

Q ss_pred             hhhHHHhcC--cHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc-----
Q 008400          405 QGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-----  477 (567)
Q Consensus       405 ~G~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-----  477 (567)
                      .|...+..|  ++++|...|+++....+.             .....+++|   |++++|+|++|...++.+++.     
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~-------------~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPT-------------WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCS-------------HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCC-------------cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            343344445  899999999998765442             001122444   899999999999999988876     


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                           +|+++.++.++..+...+|+  +|.+.+.++.+++|+++.+...
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence                 58899999999999999998  9999999999999999765443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.26  E-value=0.00073  Score=66.26  Aligned_cols=121  Identities=7%  Similarity=-0.033  Sum_probs=86.9

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC-
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-  480 (567)
                      +.-.|..++..|++++|++.+.+++...+..             ....++..++.+++++|+.+.|.+.+++..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE-------------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            3477888899999999999999997654310             12344677889999999999999999999888883 


Q ss_pred             ---CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008400          481 ---NVKALYRRAQA--YIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (567)
Q Consensus       481 ---~~ka~~~~a~a--~~~l~--~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  536 (567)
                         +-..+.+++.+  .+..|  ++.+|...|+.+....|+......++. +..++++..+++
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe  231 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQ  231 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHH
Confidence               23455555555  66556  899999999998888887333334444 555555555444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.22  E-value=0.00078  Score=69.82  Aligned_cols=93  Identities=9%  Similarity=-0.036  Sum_probs=73.1

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+.+.|..+..+|+|++|+..|+++|..........       +......++|+|..|..+|+|++|+.++.+|+
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            45688889999999999999999999999998865432211       24566779999999999999999999999998


Q ss_pred             cc-----CCCCH---HHHHHHHHHHHhc
Q 008400          476 DL-----DSRNV---KALYRRAQAYIQM  495 (567)
Q Consensus       476 ~~-----~p~~~---ka~~~~a~a~~~l  495 (567)
                      ++     -|+++   ..+.+++.++..+
T Consensus       399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          399 DIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            75     45554   4555666666544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.17  E-value=0.0054  Score=62.54  Aligned_cols=113  Identities=12%  Similarity=-0.002  Sum_probs=94.8

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-------CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~  470 (567)
                      ....+...|......++...|+..+.+|+.+.....       .+...+.....+.+..+...++.+++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            345555667777778999999999999999865322       1223455677788888899999999999999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       471 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      +.+++..+|-+..++..+-.+|...|+..+|+..|+++-+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988755

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.15  E-value=0.00062  Score=54.15  Aligned_cols=68  Identities=19%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             HhhhhhhhhHHHhcCc---HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      +..+...|..++..++   ..+|...+++|+...|.+...               ++.+|..+++.|+|.+|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA---------------~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAA---------------LSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456677788875555   799999999999998876533               7889999999999999999999999


Q ss_pred             ccCCCC
Q 008400          476 DLDSRN  481 (567)
Q Consensus       476 ~~~p~~  481 (567)
                      +.+|..
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999984

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.11  E-value=0.0011  Score=68.66  Aligned_cols=80  Identities=11%  Similarity=-0.013  Sum_probs=65.5

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+.+.|..+..+|+|++|+..|+++|..........       +......++|+|..|..+|+|++|+..+++||
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            44677888999999999999999999999999866433221       24456679999999999999999999999998


Q ss_pred             cc-----CCCCH
Q 008400          476 DL-----DSRNV  482 (567)
Q Consensus       476 ~~-----~p~~~  482 (567)
                      ++     -|+++
T Consensus       410 ~i~~~~lG~~Hp  421 (433)
T 3qww_A          410 AIMEVAHGKDHP  421 (433)
T ss_dssp             HHHHHHTCTTCH
T ss_pred             HHHHHHcCCCCh
Confidence            75     45654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.08  E-value=0.00087  Score=64.44  Aligned_cols=66  Identities=11%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 008400          463 DYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQM-----ADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEK  528 (567)
Q Consensus       463 ~~~~Ai~~~~~al~~~p~--~~ka~~~~a~a~~~l-----~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~  528 (567)
                      ....|....++|+++||+  +..||.-+|..|..+     |+.++|...|++|++++|+. .++...+......
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            468899999999999999  677999999999996     99999999999999999974 7777777765433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.73  E-value=0.0083  Score=50.06  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      .+..+++.+|..++++|+|..|+.+|+.+|+.+|+|..|.-.+..+
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3556788999999999999999999999999999998886655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.72  E-value=0.0055  Score=62.92  Aligned_cols=143  Identities=13%  Similarity=0.044  Sum_probs=98.7

Q ss_pred             hHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc------cCCCChHHHHHHHH----HHHHHHhhHHHHHHhc
Q 008400          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY------DTSFGDEEKKQAKA----LKVACNLNNAACKLKL  461 (567)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~------~~~~~~e~~~~~~~----~~~~~~~nla~~~~k~  461 (567)
                      ...-...+..+...|..+++.|+|++|++.|.+|.....-      +....+-+..+.-.    ....-...+..+|.++
T Consensus       141 A~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~  220 (449)
T 1b89_A          141 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDR  220 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHC
Confidence            3445567788899999999999999999999999422000      00000000000000    0000122466789999


Q ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHH
Q 008400          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--MADLDLAEFDIKKALEIDP-----DNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~P-----~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      |+|++|+..++++|.+++.+...+..+|.+|.+  .++..++++.|...+.+.|     .+...+.++..+.....+...
T Consensus       221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            999999999999999999999999999888776  5678889998888887777     666667777666555555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.58  E-value=0.016  Score=48.56  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      +..+++.+|..++|+|+|..|+++|+.+|+.+|+|..|.-.+..+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            556788999999999999999999999999999998886655443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.53  E-value=0.0095  Score=52.02  Aligned_cols=94  Identities=18%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh----------HHHHHHHHHHHHHHhhHHHHHHhccCHHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------e~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (567)
                      .++.+...|+.+|.+++|.+|...|++||...........          .........-..+.+.+|.||.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4667788999999999999999999999987553211100          000000001224567899999999999999


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHH
Q 008400          468 EKLCTKVLDLDSRNVKALYRRAQAY  492 (567)
Q Consensus       468 i~~~~~al~~~p~~~ka~~~~a~a~  492 (567)
                      +...+.+-. ...+++.-.-+|+.|
T Consensus       142 i~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            998766422 234678877777765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.50  E-value=0.026  Score=47.88  Aligned_cols=44  Identities=14%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~  490 (567)
                      +..|++.+|..++|+|+|..|.++|+.+|+.+|+|..|.-.+..
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            45678899999999999999999999999999999877655443

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.50  E-value=0.0048  Score=63.64  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      ....||.|+++|.+.. ||..|+++  .++.+.+|.+.  + |+++|.||+.|++++|.+    .|              
T Consensus       154 ~a~~gD~V~id~~~~~-dG~~~~~~~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~v----tF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN-EEGKKLTSREYEYVISEDEDR--P-FVKDLVGKKKGDVVEIER----EY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEEC-TTSCEEEEEEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEE----EE--------------
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEE----ee--------------
Confidence            3568999999999984 88888876  56677788776  4 999999999999999998    23              


Q ss_pred             CCCCeEEEEEEeecccc
Q 008400          246 PPNATLQIALELVSWKT  262 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (567)
                       ++.+..|.|.+..+..
T Consensus       212 -aGk~a~F~VtV~~Ik~  227 (433)
T 3gty_X          212 -EGKKYTYKLEVEEVYK  227 (433)
T ss_dssp             -TTEEEEEEEEEEEEEE
T ss_pred             -CCCeEEEEEEEEEEEE
Confidence             2457899999987643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.30  E-value=0.063  Score=58.75  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=83.2

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhcc-------CCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~-------~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+......|++++|...|++++..++..       ...+++...........++...+....+.++.+.|...+.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444556788999999999999865310       01111122222222334566666666677777888888888877


Q ss_pred             c-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          477 L-DSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       477 ~-~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      . .+...+.|...|..-...+ +++.|.+.|+++++..|++......+.......++ ..+.++.|.+....
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~  533 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDK  533 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTT
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence            6 4444566666665555554 37778888888888777777666555444333322 22334455544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.99  E-value=0.024  Score=62.00  Aligned_cols=134  Identities=14%  Similarity=0.065  Sum_probs=96.4

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhccCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~  480 (567)
                      +...++...+.++.+.|...|.+|+...+...              ..+|...|....+.+ +++.|...|+++|+..|+
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------------PDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            33444444556888999999999997733221              123555566666654 599999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR  550 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~---n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~  550 (567)
                      ++..+...+......++.+.|+..|++|+...|+   ...+...+.......+.. +.-++.++++.......
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~-~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL-NSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHSTTC
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Confidence            9998888888888999999999999999999884   445555555555544332 23456777777666543

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.67  E-value=0.33  Score=46.98  Aligned_cols=114  Identities=16%  Similarity=0.285  Sum_probs=80.6

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc--cCH-----HHHHHHHHHH
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDY-----KQAEKLCTKV  474 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--~~~-----~~Ai~~~~~a  474 (567)
                      ....|..++..|+|.+|+..|+..|..++-....+.++.++.+++...|...+-.+-+.+  +..     +...+.++-+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            468899999999999999999999999987777777788888887776665554433333  221     3333333333


Q ss_pred             -----hccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       475 -----l~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                           ..+.|.|.---+|.| ...++.++|.-|....++.|++.|..
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  231 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP  231 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence                 233444433333444 35778899999999999999998864

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=95.65  E-value=0.074  Score=51.55  Aligned_cols=117  Identities=15%  Similarity=0.092  Sum_probs=79.1

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH----HHHHHHHHHH-
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----KQAEKLCTKV-  474 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~----~~Ai~~~~~a-  474 (567)
                      ....+.|..++..|+|.+|+..|+..|..++-....+.++.++.+++...|...+-.+-+.+.+=    +...+.++-+ 
T Consensus       115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA  194 (325)
T 3mv2_A          115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA  194 (325)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            33566899999999999999999999999887766667777788777766655444443333211    1112222222 


Q ss_pred             ----hccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          475 ----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       475 ----l~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                          ..+.|.+.---+|.| ...++.++|.-|....++.|++.|..+
T Consensus       195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence                233444433333444 357788999999999999999999754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.55  E-value=0.21  Score=42.70  Aligned_cols=94  Identities=12%  Similarity=0.034  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 008400          416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM  495 (567)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l  495 (567)
                      ++-+..|++|+...|....       ....-.+.++.+.|.- ...++.++|.+.|+.++.+....++.|...|+--...
T Consensus        36 ~rlrd~YerAia~~Pp~k~-------~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq  107 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKY-------GQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ  107 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGG-------TTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCcccc-------ccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            7778899999998876421       1113344455566643 5669999999999999998888899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH
Q 008400          496 ADLDLAEFDIKKALEIDPDNRD  517 (567)
Q Consensus       496 ~~~~~A~~~~~~al~l~P~n~~  517 (567)
                      |+...|++.+.+|+.+.|....
T Consensus       108 gnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A          108 GNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             TCHHHHHHHHHHHHHTTCBCHH
T ss_pred             ccHHHHHHHHHHHhccCCCcHH
Confidence            9999999999999999999843

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.98  E-value=0.17  Score=50.41  Aligned_cols=125  Identities=9%  Similarity=-0.012  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhhhccCCCChHHHHH----------HHHHHHHHHhhHHHHHHhccCH-----------HHHHHHHHHH
Q 008400          416 ARASKRYEKAVKYIEYDTSFGDEEKKQ----------AKALKVACNLNNAACKLKLKDY-----------KQAEKLCTKV  474 (567)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~e~~~~----------~~~~~~~~~~nla~~~~k~~~~-----------~~Ai~~~~~a  474 (567)
                      -.|..+|-++..++....   .+...+          ..+-...++..++.||.-+..+           ..|+. ...+
T Consensus       194 ~~Aydl~Lra~~~l~~~~---~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a  269 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGD---DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVT  269 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHT
T ss_pred             HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHh
Confidence            367788888877765421   222222          2222344667777777632211           12222 1123


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      +..+|.++.++..+|.++...|++++|+..+++|+.++|+ ......++.+....++.+++. ..|.+.|..
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL  339 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNL  339 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhc
Confidence            4677999999999999999999999999999999999975 566677787777666665544 355555543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.82  E-value=0.24  Score=50.12  Aligned_cols=98  Identities=15%  Similarity=0.031  Sum_probs=79.6

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC---CC
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD---SR  480 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~---p~  480 (567)
                      ..|..++..|+|.+|++.+.+.++.+.....         ......+|......|..++++.++...+.+|....   +.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6788999999999999999999998765332         36778889999999999999999999999986542   12


Q ss_pred             C--H--HHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 008400          481 N--V--KALYRRAQAYI-QMADLDLAEFDIKKALE  510 (567)
Q Consensus       481 ~--~--ka~~~~a~a~~-~l~~~~~A~~~~~~al~  510 (567)
                      +  .  +...--|..|+ ..++|..|..+|-.+++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            2  2  33445588899 89999999999988874

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.18  Score=55.32  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (567)
                      ++.-.|.-.+..++|+-|+..+++|...-|.....|+++|.||..+++|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44455666778899999999999999999999999999999999999999999888776

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.44  E-value=0.46  Score=41.31  Aligned_cols=95  Identities=16%  Similarity=0.119  Sum_probs=67.8

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc--cC----
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--LD----  478 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~--~~----  478 (567)
                      .+-.+|-.|+|.+|+-+..       ....             .+..+.-+.||.++++|..|+......|+  .+    
T Consensus        39 ~~I~LyyngEY~R~Lf~L~-------~lNT-------------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~   98 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLH-------KLNT-------------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD   98 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-------TCCB-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC
T ss_pred             hhhhhhhcchHhHHHHHHH-------hcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            4556667777766654433       2221             22355679999999999999999999983  22    


Q ss_pred             -----------CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          479 -----------SRNVKALY-RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       479 -----------p~~~ka~~-~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                                 |.+-..++ .+|..+..+|+-++|+..+......+|--..+.
T Consensus        99 ~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           99 VDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                       33334433 569999999999999999999998887655544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.85  E-value=0.86  Score=47.69  Aligned_cols=119  Identities=13%  Similarity=0.027  Sum_probs=80.9

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------C--hHHHHHH----------------HHHHHHHHhhHHH
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------G--DEEKKQA----------------KALKVACNLNNAA  456 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~--~e~~~~~----------------~~~~~~~~~nla~  456 (567)
                      +...+..+...|+.+.|...|.+|+.. |.+...       .  ++....+                ......++.+.+.
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            445566667789999999999999998 654311       0  0000000                0112345666777


Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEY  522 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l  522 (567)
                      ...+.+..+.|...+.+| ...+.....|...|..-...+ +.+.|+..|+.+++..|++......+
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y  360 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF  360 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            777788999999999999 433335566666666666555 69999999999999999987654433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.67  E-value=0.2  Score=51.59  Aligned_cols=100  Identities=12%  Similarity=-0.011  Sum_probs=78.7

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc---
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---  477 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~---  477 (567)
                      .+...|.-+++.|++..|++.|.++........            .++.++++...+++..++|..|..+++++..+   
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            466899999999999999999999887765432            24566888888999999999999999998554   


Q ss_pred             CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          478 DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       478 ~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      .++.   .+.....|..++..++|.+|...|..++.-.
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            2222   2344556788889999999999998877653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.61  E-value=0.46  Score=44.89  Aligned_cols=69  Identities=12%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ..++.+..++|+..+...++.+|.|.+.-..+.+.++-.|+|+.|.+.++.+.+++|+.......++.+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999987666555544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.83  E-value=1.1  Score=46.63  Aligned_cols=83  Identities=12%  Similarity=0.010  Sum_probs=71.7

Q ss_pred             HHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ....++.++|....-...+..|..+|.+|+.+.|++..+|..+|..+...++.-+|.-+|-+++-...-...++..+..+
T Consensus       150 ~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            34457788899888889999999999999999999999999999999999999999999999998876677676666655


Q ss_pred             HHH
Q 008400          526 KEK  528 (567)
Q Consensus       526 ~~~  528 (567)
                      ..+
T Consensus       230 f~~  232 (497)
T 1ya0_A          230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=90.81  E-value=2.3  Score=42.83  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=89.2

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh-------------------ccCCCChHH---------HHH---HHHH
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE-------------------YDTSFGDEE---------KKQ---AKAL  446 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~-------------------~~~~~~~e~---------~~~---~~~~  446 (567)
                      .-....+.|..+.+.|++++-.........++.                   ......+..         +..   ...+
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888999999998887777654333322                   111111111         100   1123


Q ss_pred             HHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHH
Q 008400          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS----R--NVKALYRRAQAYIQMADLDLAEFDIKKALEID---PDNRD  517 (567)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p----~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---P~n~~  517 (567)
                      +..+-.++|..|+..|+|.+|+..+.+.++.-.    .  -...+....+.|..++++.++...|.+|....   +-++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence            444566899999999999999999998876321    1  15677888999999999999999999998764   24555


Q ss_pred             HHHHHHHHHHHHHH
Q 008400          518 VKLEYKTLKEKMKE  531 (567)
Q Consensus       518 ~~~~l~~~~~~~~~  531 (567)
                      +...+..+.-....
T Consensus       178 i~a~i~~~~Gi~~l  191 (394)
T 3txn_A          178 VQGALDLQSGILHA  191 (394)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHH
Confidence            66666655444333

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.50  E-value=1  Score=42.47  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=50.4

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHH
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k  483 (567)
                      ...+++.|..++|+......++..|.+...               ...+...++-.|+|++|.+.++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~---------------R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            356889999999999999999988765532               334455555679999999999999999998743

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.95  E-value=1.8  Score=45.27  Aligned_cols=126  Identities=9%  Similarity=-0.061  Sum_probs=88.6

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc-CHHHHHHHHHHHhccCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~  480 (567)
                      +...+....+.++.+.|...|.+| . .+. .  .           ..+|...|...+..+ +.+.|...++.+++.-|+
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~--~-----------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-G-NEG-V--G-----------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-C--C-----------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-C--C-----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence            344444444567799999999999 3 221 1  1           123444565555556 699999999999998899


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMK  548 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  548 (567)
                      .+..+...+.....+|+.+.|+..|+++    +....+...+.......+. .+.-++++.+++..+.
T Consensus       353 ~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~-~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          353 STLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS-MELFRELVDQKMDAIK  415 (493)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhc
Confidence            8888777788888999999999999998    3456666666666555543 2334567777777665

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=89.90  E-value=0.54  Score=35.96  Aligned_cols=40  Identities=23%  Similarity=0.171  Sum_probs=34.6

Q ss_pred             ChHH-HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh
Q 008400          391 NTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (567)
Q Consensus       391 ~~~e-~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~  430 (567)
                      +..+ .+..|..+..+|...=+.|+|.+|+.+|..|++++.
T Consensus         2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A            2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4445 677889999999999999999999999999998754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.56  E-value=3.9  Score=42.02  Aligned_cols=105  Identities=13%  Similarity=0.053  Sum_probs=77.7

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc-
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-  476 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~-  476 (567)
                      +|.-....+..++..|+|.+|.........-.-....         +..++.+++.....|+..++|.+|...++++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~---------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME---------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3444567788999999999999998887643221111         244666777888899999999999999998742 


Q ss_pred             --cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          477 --LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       477 --~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                        -.+.+    ...+...|..+...++|.+|-.+|..++..
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              22333    244556788999999999999999988764

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=87.14  E-value=1.3  Score=36.25  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             cCCChH-HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          388 WDMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       388 ~~~~~~-e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      ..|+.. ..+..|..+..+|...=..++|.+|+.+|..|++++-.
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            345555 67788999999999999999999999999999997653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.89  E-value=0.77  Score=50.39  Aligned_cols=60  Identities=20%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      .-+..++..+..+|+|+-|+..-++|+...|....               +|..||.||.++++|+.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~---------------tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE---------------SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH---------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            35667788888999999999999999999886553               3899999999999999999888776

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.68  E-value=1.2  Score=33.98  Aligned_cols=41  Identities=24%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             CCh-HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh
Q 008400          390 MNT-EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (567)
Q Consensus       390 ~~~-~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~  430 (567)
                      |++ ...+..|..+..+|...=+.|+|++|+.+|..|++++.
T Consensus         9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A            9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            444 35568899999999999999999999999999998754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=83.57  E-value=3.3  Score=43.11  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=70.6

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      -..+...|.....+..+..|...|.+|+.+.|.....               |+-+|.++...+++-.|+-+|-++|...
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~---------------~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP---------------YNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCch---------------HHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            3466788988888899999999999999999987754               8899999999999999999999999988


Q ss_pred             CCCHHHHHHHHHHHHh
Q 008400          479 SRNVKALYRRAQAYIQ  494 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~  494 (567)
                      ...+.|.-++...+..
T Consensus       217 ~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          217 FPFPAASTNLQKALSK  232 (497)
T ss_dssp             BCCHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHH
Confidence            7788888888777764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=82.82  E-value=6.2  Score=41.21  Aligned_cols=99  Identities=5%  Similarity=-0.042  Sum_probs=73.6

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC-CCC
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRN  481 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~-p~~  481 (567)
                      ...-..+.+.|++++|.+.|.+..+.--   ..           ....|+.+-.+|.+.|++++|...+++..+.. ..+
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~---~P-----------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGI---QP-----------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTC---CC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC-----------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            3444567788999999999988765311   00           12236677778889999999999999987653 235


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCC
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDN  515 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~P~n  515 (567)
                      ...|..+-.+|...|++++|.+.|++..+.  .|+.
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence            678888889999999999999999987664  4554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=82.51  E-value=9.4  Score=38.30  Aligned_cols=80  Identities=13%  Similarity=-0.032  Sum_probs=60.4

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCC----------C------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSR----------N------------VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~----------~------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (567)
                      ..|......++...|+..+.+||.+...          .            ..++..++.+++.+|++.+|+..+.+++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444444568899999999999887421          1            14566788899999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHH
Q 008400          511 IDPDNRDVKLEYKTLKEKMKEY  532 (567)
Q Consensus       511 l~P~n~~~~~~l~~~~~~~~~~  532 (567)
                      .+|-+..++..+-.+..+..+.
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~  221 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQ  221 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCH
Confidence            9999988777776665444333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=81.02  E-value=5.4  Score=35.09  Aligned_cols=26  Identities=12%  Similarity=0.044  Sum_probs=16.1

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHH
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAV  426 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al  426 (567)
                      .++..|.....+|+++-|.++|.++-
T Consensus        36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           36 TWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            45666666666666666666666543

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=81.00  E-value=4.6  Score=31.42  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.3

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      .+..|..+..+|..+=+.|+|++|+.+|..|++++-.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999999999998653

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.09  E-value=1.7  Score=33.23  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhh
Q 008400          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (567)
Q Consensus       390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~  430 (567)
                      |+....+..|..+..+|...=..|+|++|+.+|..|++++-
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~   44 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM   44 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            33334567788889999998899999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	567
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	8e-36
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-19
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-18
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-33
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-32
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-15
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	5e-32
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-19
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-17
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	8e-31
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	4e-22
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	9e-20
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-29
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	3e-14
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	5e-14
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	3e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	7e-16
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-12
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-29
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	5e-29
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-18
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	1e-14
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	9e-27
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	7e-21
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	6e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-25
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	6e-12
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	6e-23
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	4e-11
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-10
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-22
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-11
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	9e-19
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	1e-17
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	8e-05
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.001
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	6e-17
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	3e-06
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	9e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-04

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  127 bits (321), Expect = 8e-36
 Identities = 62/111 (55%), Positives = 78/111 (70%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIK
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           GWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.4 bits (203), Expect = 1e-19
 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS--RDRGDQFSFNLGRGNVI 66

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  +
Sbjct: 67  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 79.0 bits (194), Expect = 2e-18
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G     +             G+   
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TM KGE     ++  YG+G+      G+   +P  ATL   +EL  W 
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDA-----GSPPKIPGGATLIFEVELFEWS 117

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  122 bits (306), Expect = 4e-33
 Identities = 66/166 (39%), Positives = 105/166 (63%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
           KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K ++
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
           +  +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A+ D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 505 IKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR 550
            +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K   +
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ 166

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  117 bits (294), Expect = 4e-32
 Identities = 58/108 (53%), Positives = 74/108 (68%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL +
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D+ V+K + + G G E P  G  V V   GKL +G  F      +  + F F   + QV
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS--HDRNEPFVFSIGKGQV 59

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           I   D  V TMKK E+  L   PEYA+G+  S      +P N+T+ +EVEL+ F+
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP---KIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 69.8 bits (170), Expect = 3e-15
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D V V+Y  +L +G        + +   F++  G    
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G         +P NATL   +EL+ +K
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGS-----LPKIPSNATLFFEVELLDFK 111

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 5e-32
 Identities = 63/109 (57%), Positives = 74/109 (67%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            ++G+ K + +EG G + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            WDI I TMK GE    T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 1e-19
 Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDS--SLDRKDKFSFDLGKGEVI 67

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E
Sbjct: 68  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG     +   +         G    
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
               A+ TMK GE   +  KP+Y +G       G+   +PPNATL   +EL  +K
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSA-----GSPPKIPPNATLVFEVELFEFK 118

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  113 bits (285), Expect = 8e-31
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 31  EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG 90
           E  + + G+ ++  + GEG+  P  G  V++H  G    G  FD      T  +      
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGEDHD- 59

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
            +  G D  ++ M++ E  +  + P   +GE+G P   I PNA L ++V L S+
Sbjct: 60  -IPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 89.3 bits (221), Expect = 4e-22
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 265 EITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           ++ +D  +I++  + G+G+  PNEGA V++ L G+        +     +      + ++
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGG-----RVFDCRDVAFTVGEGED 57

Query: 325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK
Sbjct: 58  HDIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 82.8 bits (204), Expect = 9e-20
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKDGHFC 205
           +D+ +DGGII++  + GE + NP +   V ++ E R    +   +         +D    
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIP 61

Query: 206 PTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
             + KA++ M++ E+ +L + P+YGFGE GK     +  + PNA L   + L S++
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFE 113

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (276), Expect = 1e-29
 Identities = 56/110 (50%), Positives = 70/110 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL 
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G        +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-----GLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (161), Expect = 5e-14
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           SE+ +   V    +  GDG   P  G +V +   G L++G  F      +    F+    
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS--VDRGSPFQCNIG 57

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 7e-16
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
           V  + +  GDG   P  G    V   G L+DG  F         + F+F   +++VI G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGW 59

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG     +       +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G       G+ G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGAT-----GHPGIIPPHATLVFDVELLKLE 107

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-29
 Identities = 66/170 (38%), Positives = 109/170 (64%)

Query: 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
           SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE ++A+AL
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
           ++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +LA  D +
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSRAQGGRA 556
           K L++ P+N+  K +    +++++    +E K Y NMF ++       +A
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 170

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 5e-29
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 8/113 (7%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQG 90
              K ++K+G+  + P+ GD V   YTGTL DGT FD++          + P  F +G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLS 142
            VI+GWD  + TM KGE A   I PE AYG+ G P   IPPNA L F+VEL+ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE-----QLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF     +  +     +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-----------MVVGKADGVEFTVKDG 202
              K +LK+G+K   PK  D V   Y   L+DG                A  + F V  G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
                  +A+ TM KGEK  L ++P++ +G+KG+     +  +PPNA L   +ELV 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELVD 114

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 9e-27
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E  + G+ +++   GEG+  P  G  VEV   G   D                     ++
Sbjct: 4   EEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF---EIGEGENLDL 60

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVKD 148
             G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 7e-21
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 7/120 (5%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++I   G+G+ +PNEGA+V+V L G  +D     ++   E  +          
Sbjct: 5   EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENL-----D 59

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           +  GL+RA+  M+K E +++ + P YAFG     +E   +PPN+ + YE+ L SFEK KE
Sbjct: 60  LPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 6e-16
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-MVVGKADGVEFTVKDGHFCPTLA 209
           +DGGII++I   GE +  P +   V V  E   +D      +        ++      L 
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE 65

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   E
Sbjct: 66  RAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 117

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (252), Expect = 3e-25
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           + GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI G
Sbjct: 106 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPG 162

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W  G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL  
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 63.3 bits (153), Expect = 4e-12
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF 320
           K     T    ++ ++++ G G E P +   V V   G L DG  F       E      
Sbjct: 98  KEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEP----L 152

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
               + VI G    +  +KK     L I PE A+G A        +PPNST+ ++VEL+ 
Sbjct: 153 SFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLD 208

Query: 381 FE 382
            +
Sbjct: 209 VK 210

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 56.8 bits (136), Expect = 8e-10
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
           E PKD D V+VNY+  L DG     +   G   + +     P   + +K +KKG K+ L 
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 179

Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 180 IPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 210

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 96.6 bits (239), Expect = 4e-24
 Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQ 442
           +K  +D   EEK+++A   KE+GN  FK  +   A  +Y++A+ +  +   + D+    +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
            K ++++CNLN A C  K KDY +A    +KVL +D  NVKALY+   A +    L+ A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
            ++ KA  ++P+N D++  Y+    K+KE  K
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 97.6 bits (242), Expect = 5e-24
 Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
             GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F      VI G
Sbjct: 97  PSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPG 153

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W   ++ M  G      +P  LAYG       I PN TL F + L+S 
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 62.9 bits (152), Expect = 6e-12
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     +  K++  G+G  +P +   V V+  G+L DGTVF     S E+          
Sbjct: 94  VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVF----DSTEKTGKPATFQVS 148

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           QVI G   A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 149 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 3e-09
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLA 209
             G+  K++  G   +  K  D V V Y  RL DG V    +  G   T +     P   
Sbjct: 97  PSGLQYKVINSGNGVKPGKS-DTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWT 155

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +A++ M  G    + V     +G +        G + PN TL   + L+S K
Sbjct: 156 EALQLMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 202

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 92.2 bits (228), Expect = 6e-23
 Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL       G G      G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 98  I------GIKTMKKGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
                  GI  M  G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE----EQVIDG 330
                G G     +G ++K   +GKL++G VF    +  +   F     E          
Sbjct: 13  CDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGIL 71

Query: 331 LDRAVITMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELV 379
               +  M       L I PE A+G   A  +    ++PP S + +++E +
Sbjct: 72  GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHF------- 204
           G+       G           +  +Y  +LE+G V       G   T + G         
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 205 -CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
                +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 90.7 bits (224), Expect = 5e-22
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 19/143 (13%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F      VIKGW 
Sbjct: 35  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVIKGWT 92

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------------- 138

Query: 158 KILKEGEKWENPKDLDEVLVNYE 180
              K+G K    +++DE+L   E
Sbjct: 139 ---KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 60.6 bits (146), Expect = 2e-11
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     ++ + +  G G   P      +V   G+L+DGTVF     S  E+         
Sbjct: 30  VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVF----DSSRERGKPTTFRPN 85

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
           +VI G   A+  M++ +   L I  + A+G         ++PP S + ++VEL+S    K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI---K 139

Query: 386 ESWDMNTEEKIEAAGKKKEQ 405
           +     T E+++   +K E+
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHF--CPTLA 209
             G++ + +  G     P   D+  V+Y  RL DG V   +                   
Sbjct: 33  PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWT 92

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDD 269
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S K   +    
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 147

Query: 270 KKVIKKILKEGD 281
           ++V + + K  +
Sbjct: 148 EEVDEILRKAEE 159

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 9e-19
 Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEE 439
           F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E    +  D +
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499
             + + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +  + + D
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128

Query: 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
            A  D+KKA EI P+++ ++ E   +K+K+K    KE   Y
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 77.9 bits (191), Expect = 1e-17
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE--SGSPPTIPPNATLQFDVEL 140
             M+ G+     IP E AYG         IP +A  + D E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 287 NEGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAV 335
           ++G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           + M+  +   + I  E A+G   ++  +  +P ++    + E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYG-NRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 173 DEVLVNYEARLEDGMVV-----------------GKADGVEFTVKDGHFCPTLAKAVKTM 215
            ++ V+Y  +LE G V                   + + +EF V +G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEG-AVPPNATLQIALELVSWK-----TVSEITDD 269
           + G++  + +  +  +G + +             A  +    +V        T++E+TD+
Sbjct: 66  EVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITEVTDN 125

Query: 270 KKVI 273
           +  +
Sbjct: 126 EVTL 129

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 73.9 bits (181), Expect = 6e-17
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
             NGD   + +TG + D  +  S+  ++       G  + IKG++ G+  MK  +     
Sbjct: 2   LANGDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +     Y           +  + F+V L +
Sbjct: 59  LTFPSDYHVKE-----LQSKPVTFEVVLKA 83

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
            G +  +   G + D         S +             I G +  +I MK N+   L 
Sbjct: 4   NGDIAIIDFTGIV-DNKKL--ASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +     +   E          +  V +EV L + +
Sbjct: 59  LTFPSDYHVKE--------LQSKPVTFEVVLKAIK 85

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 169 PKDLDEVLVNYEARLEDGMVVGK-ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227
             + D  ++++   +++  +    A   E T+    F       +  MK  +K  LA+  
Sbjct: 2   LANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
              +  K             +  +   + L + K
Sbjct: 62  PSDYHVKE----------LQSKPVTFEVVLKAIK 85

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG 436
           F++   ++          A          ++ G    A   Y +A++    + +   +  
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 437 D---EEKKQAKALKVA------------CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481
           +   E+   A+A                   N A  K +  + ++A +L  K L++    
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530
             A    A    Q   L  A    K+A+ I P   D         ++M+
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 5e-10
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +  A  + +  D++ AE+ C ++   +  N   L   +  + Q   LD +      A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 512 DPDNRDV 518
           +P   + 
Sbjct: 63  NPLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L     L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVL-----LLLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495
             ++    T  +  +    +A       Y + 
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 15/132 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G+   A   +EKAV            +     A      +N      + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTL----------DPNFLDAY-----INLGNVLKEARIFD 220

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A     + L L   +       A  Y +   +DLA    ++A+E+ P   D        
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 526 KEKMKEYNKKEA 537
            ++     + E 
Sbjct: 281 LKEKGSVAEAED 292

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 9e-12
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA         YE A+K+                       
Sbjct: 3   ADGALKRAEELKTQANDYFKAKD-------YENAIKFYSQAIELNPSNAI--------YY 47

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
            N +   L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++
Sbjct: 48  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107

Query: 512 DPDNRDVKLEYKTLKEKMKEYNKKEA 537
            P ++D K++Y+   + +K+   + A
Sbjct: 108 KPHDKDAKMKYQECNKIVKQKAFERA 133

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 7e-10
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 15/141 (10%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+                          N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALC 47

Query: 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 518 VKLEYKTLKEKMKEYNKKEAK 538
              +      ++ +  +  + 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSI 128

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A K+KE GN  +K   +  A K Y+KA +    + +            + A         
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT--------YITNQAAVYFEKGDYN 55

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              +  ++A ++  +  +   +  KA  R   +Y +      A     K+L       DV
Sbjct: 56  KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DV 114

Query: 519 KLEYKTLKEKMKE 531
             + +  ++ +KE
Sbjct: 115 LKKCQQAEKILKE 127

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E   + KE+GN     G    A + Y +A+K   ++                    N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSA 45

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
              K  DY++A +   K +DL     K   R+A A   +   + A+   ++ L+ + +N 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 105

Query: 517 DVKLEYKTLKEK 528
            +K   + ++ +
Sbjct: 106 QLKEGLQNMEAR 117

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 14/149 (9%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           +++  A            AG+Y  A+    +A   +E   +   EE          C+  
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 454 NAACKLKLKDYKQAEKLCTKVLDL-----------DSRNVKALYRRAQAYIQMADLDLAE 502
            A     L+ + +A     K L                 + A+Y RA A   +     A 
Sbjct: 61  LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
            + KK +E+  + +      + + E   +
Sbjct: 121 PEFKKVVEMIEERKGETPGKERMMEVAID 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466
           N L       +  K+++                 K  +     C +          D ++
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTR----YNDDIRK 54

Query: 467 AEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
              L  ++L   S+      ++  A    ++ + + A   ++  L+ +P N   K   + 
Sbjct: 55  GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114

Query: 525 LKEKMK 530
           + + MK
Sbjct: 115 IDKAMK 120

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 18/181 (9%)

Query: 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS 419
           + E+  VP   T+  EV L   E+   S  +  +E+ +      E+G      G  A A 
Sbjct: 1   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLL---YERGVLYDSLGLRALAR 57

Query: 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479
             + +A+                                 +  ++  A +    VL+LD 
Sbjct: 58  NDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 102

Query: 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
               A   R  A        LA+ D+    + DP++    L     ++K+ E   KE   
Sbjct: 103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162

Query: 540 Y 540
            
Sbjct: 163 Q 163

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%)

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
                      +    ++ +   T    L     +  +   + Y+ + DLD A    K A
Sbjct: 176 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235

Query: 509 LEIDPDN 515
           +  +  N
Sbjct: 236 VANNVHN 242

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 17/130 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G    K    +   K    +  YI                    C ++            
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQH-----------------CLVHLGDIARYRNQTS 169

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           QAE        L   N +   + A       D     F   +++ +           +  
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229

Query: 526 KEKMKEYNKK 535
             K  E   +
Sbjct: 230 LSKALESRDE 239

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 12/157 (7%), Positives = 31/157 (19%), Gaps = 33/157 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-----------------KQAKALKV 448
                           Y+K    +  D  +  ++K                 +     + 
Sbjct: 27  AEVWTSRQALQDL---YQKM---LVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80

Query: 449 ACNLNNAACKLK------LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
             N +     L          Y Q  +    V ++D        +      +        
Sbjct: 81  NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140

Query: 503 FDIKKALEIDPD----NRDVKLEYKTLKEKMKEYNKK 535
                +          +      Y+    + + Y + 
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRH 177

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 12/169 (7%), Positives = 34/169 (20%), Gaps = 18/169 (10%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---- 436
             +E    D               +   L +      +  +       +  +        
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219

Query: 437 -----------DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485
                             +A  +     +      L+   ++ K   ++   +   +  +
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279

Query: 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
               +A   +               +DP           L+ K    N 
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY---LDDLRSKFLLENS 325

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 12/83 (14%), Positives = 27/83 (32%)

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
                 A        ++A     + L+L    +++ Y    + I +     A     +AL
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267

Query: 510 EIDPDNRDVKLEYKTLKEKMKEY 532
            +   +R  + E   + E +   
Sbjct: 268 NMQRKSRGPRGEGGAMSENIWST 290

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 18/154 (11%)

Query: 380 SFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE 439
           +++K  +  + N            E+G    + G    A   +E AV+           +
Sbjct: 3   TYDKGYQFEEENPLRDHPQP---FEEGLRRLQEGDLPNAVLLFEAAVQQ----------D 49

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499
            K  +A            + + +    A     + L+L   N  AL   A ++   +   
Sbjct: 50  PKHMEAW-----QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104

Query: 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533
            A   ++  L   P    +    +          
Sbjct: 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 138

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 9/60 (15%), Positives = 22/60 (36%)

Query: 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           R+    +      +Q  DL  A    + A++ DP + +      T + + ++     +  
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G        +  A   +                +   ++        N       LK+ 
Sbjct: 11  EGVLAADKKDWKGALDAFSAV-------------QDPHSRIC-----FNIGCMYTILKNM 52

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            +AEK  T+ ++ D     A ++R   Y Q    DLA  D+K+AL     N+ +  +YK 
Sbjct: 53  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--DYKI 110

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMK 548
           L  + K +  +       M+AK +
Sbjct: 111 LGLQFKLFACEVLYNIAFMYAKKE 134

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 462 KDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
            D +   K+ T +     SR  + LY       ++ +  +A+  +    E + +N+ V  
Sbjct: 52  NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111

Query: 521 EYKTLKEKMK 530
               +++K++
Sbjct: 112 LKSMVEDKIQ 121

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 15/116 (12%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q       G+  +A +   +A+K             K A         +         D+
Sbjct: 2   QWKNALSEGQLQQALELLIEAIK----------ASPKDASLR-----SSFIELLCIDGDF 46

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
           ++A++   + + L    +    +                    A  +  +    K 
Sbjct: 47  ERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	567
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.94
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.91
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.89
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.88
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.85
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.85
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.84
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.8
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.78
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.77
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.76
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.68
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.52
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.51
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.38
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.28
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.23
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.21
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.17
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.15
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.11
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.09
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.05
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.05
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.03
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.99
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.7
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.55
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.55
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.49
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.41
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.36
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.18
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.12
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.12
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.09
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.09
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.97
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.71
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.07
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.97
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.77
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.57
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.11
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.14

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=3.1e-26  Score=206.74  Aligned_cols=167  Identities=40%  Similarity=0.670  Sum_probs=159.8

Q ss_pred             ccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCH
Q 008400          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (567)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~  464 (567)
                      ++.|.|+.+|++..|..++++|+.+|+.|+|.+|+..|++|+.+++.......+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            36899999999999999999999999999999999999999999998888777888888899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008400          465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (567)
Q Consensus       465 ~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  544 (567)
                      .+|+.+|+++|.++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|..+...+..+...+.+.++++++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhcc
Q 008400          545 AKMKSRA  551 (567)
Q Consensus       545 ~~~~~~~  551 (567)
                      +++...+
T Consensus       161 ~~~~~~d  167 (168)
T d1kt1a1         161 KKFAEQD  167 (168)
T ss_dssp             HHHHTTC
T ss_pred             hhhhhcC
Confidence            9987654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-26  Score=206.17  Aligned_cols=167  Identities=39%  Similarity=0.696  Sum_probs=160.1

Q ss_pred             ccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHH
Q 008400          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (567)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (567)
                      +|+|+.++++..|..++++|+.+|+.|+|.+|+..|++||.+++........+......+...+|+|+|.||+++++|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            58999999999999999999999999999999999999999999888887888888999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       467 Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      |+.+|+++|.++|+++++|+++|.||..+|+|++|+.+|++|++++|+|..+...+..+..++.+..+++++.|++||.+
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccc
Q 008400          547 MKSRAQG  553 (567)
Q Consensus       547 ~~~~~~~  553 (567)
                      +...++.
T Consensus       161 ~~~~~~~  167 (170)
T d1p5qa1         161 LAEEENK  167 (170)
T ss_dssp             HHHHHHH
T ss_pred             Hhcchhh
Confidence            9876543

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=4e-26  Score=191.33  Aligned_cols=110  Identities=56%  Similarity=1.009  Sum_probs=105.6

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      .++||+|+++++|+|...|..||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            56899999999999977899999999999999999999999988789999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |++|||+.+.++.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999988999999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=188.38  Aligned_cols=111  Identities=57%  Similarity=0.936  Sum_probs=106.0

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      .++||+|+++++|+|...|..||.|.|||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip   88 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK   88 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEEC
Confidence            45999999999999977799999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      |++|||..+.++.||++++|+|+|+|++|+.
T Consensus        89 ~~laYG~~g~~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          89 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHhCCCcCCCCCCCcCCcEEEEEEEEEEeC
Confidence            9999999998889999999999999999864

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-25  Score=184.39  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=102.2

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCc
Q 008400           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (567)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~  117 (567)
                      |++|+++++|+|...|+.||.|.+||++++.||++|+++++++.|+.|.+|.+++++||++||.+|++|++++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999965689999999999999999999999988789999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |||..+.++.||++++|+|+|+|++++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999999888899999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.3e-25  Score=184.81  Aligned_cols=111  Identities=50%  Similarity=0.864  Sum_probs=105.9

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ++.++|++++++++|+|...|+.||.|.|||++++.||++|++++....|+.|.+|.+++++||++||.+|++|++++|.
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~   81 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEE
Confidence            45789999999999999666899999999999999999999999988899999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEE
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~  143 (567)
                      |||++|||..+.++.||++++|+|+|+|++|
T Consensus        82 iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             echHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999998889999999999999987

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=4.5e-26  Score=189.17  Aligned_cols=110  Identities=53%  Similarity=0.911  Sum_probs=86.1

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEec
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip  114 (567)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++|++.++|+.|.+|.+++|+||+++|.+|++||+++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            46899999999999977799999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |++|||..+.++.||++++|+|+|+|++|+
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            999999999888999999999999999984

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=3.1e-24  Score=198.14  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.7

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||++||.+|++|++++|+
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999887899999887  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEee
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~  145 (567)
                      |||++|||..+.++.|||+++|+|+|+|++|..
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            999999999999889999999999999999864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.5e-24  Score=197.21  Aligned_cols=108  Identities=49%  Similarity=0.916  Sum_probs=103.0

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ..+++|++|+++++|+| +.|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||++||.+|++|++++|+
T Consensus       103 ~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         103 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            45899999999999999 89999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEe
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  144 (567)
                      |||++|||+.+.+ .|||+++|+|+|+|++|+
T Consensus       180 iP~~laYG~~g~~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVP-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCC-CCCcCCcEEEEEEEEEEC
Confidence            9999999999976 599999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.90  E-value=5.1e-23  Score=182.32  Aligned_cols=149  Identities=34%  Similarity=0.507  Sum_probs=136.8

Q ss_pred             ccccCCChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCCh-HHHHHHHHHHHHHHhhHHHHHHhccC
Q 008400          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKKQAKALKVACNLNNAACKLKLKD  463 (567)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-e~~~~~~~~~~~~~~nla~~~~k~~~  463 (567)
                      ++.|+|+.++++..|..+++.|+.+|+.|+|.+|+..|.+|+.+++....... ........+...+|+|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            56899999999999999999999999999999999999999999877655433 44566677888999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008400          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (567)
Q Consensus       464 ~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  533 (567)
                      |.+|+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|..+...+..+..++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999988776543

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=174.96  Aligned_cols=106  Identities=47%  Similarity=0.853  Sum_probs=98.7

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCC-------CCCcEEEEccCCcchHHHHHHhcccccccEEE
Q 008400           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (567)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~-------~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~  110 (567)
                      .+.++|+++|+|...|+.||.|.|||++++.||++||+++.       ..+|+.|.+|.+++++||++||.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            47899999999966799999999999999999999999864       34799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCC-CCCCCCCcEEEEEEEEEE
Q 008400          111 FTIPPELAYGESGSP-PTIPPNATLQFDVELLSW  143 (567)
Q Consensus       111 i~ip~~~ayg~~~~~-~~ip~~~~l~~~vel~~~  143 (567)
                      |+|||++|||+.+.+ ..||++++|+|+|+|++|
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            999999999999875 579999999999999987

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=1.5e-23  Score=178.27  Aligned_cols=111  Identities=41%  Similarity=0.712  Sum_probs=102.9

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcc------ccc
Q 008400           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (567)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~------m~~  105 (567)
                      ..++|||++|+++++|+| +.|+.||.|.|||++++.||++|++|+..+.|+.|.+|.+.+++||++++.+      |++
T Consensus         3 ~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccC
Confidence            456899999999999999 8899999999999999999999999988789999999999999999998865      999


Q ss_pred             ccEEEEEecCCcccCCCCC-----CCCCCCCCcEEEEEEEEEE
Q 008400          106 GENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELLSW  143 (567)
Q Consensus       106 Ge~~~i~ip~~~ayg~~~~-----~~~ip~~~~l~~~vel~~~  143 (567)
                      |++++|+|||++|||+++.     ++.||++++|+|+|||+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999875     2459999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=3.2e-23  Score=183.00  Aligned_cols=114  Identities=41%  Similarity=0.662  Sum_probs=103.3

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~  112 (567)
                      ..+|+||+|+++++|+|...|..||.|.|||++++.||++|++++....|+.  ++.+.+|+||+++|.+|++|++++|+
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~~--~~~~~~i~G~~e~l~~M~~Ge~~~v~  107 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTT--FRPNEVIKGWTEALQLMREGDRWRLF  107 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEE--ECGGGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCccc--cCccccchhHHHHhcCccccceeEEE
Confidence            4589999999999999966789999999999999999999999987667755  45569999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEEeeccc
Q 008400          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKD  148 (567)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~  148 (567)
                      |||++|||..+.++.||++++|+|+|+|++|.+...
T Consensus       108 iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         108 IPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             ECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             eCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCC
Confidence            999999999998888999999999999999975443

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=7.9e-23  Score=171.06  Aligned_cols=110  Identities=39%  Similarity=0.632  Sum_probs=102.7

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      .|+++.++|+++|+|..+|..|++|+|||++++.||++|+++..  ++.|++|.+|.+.+|+||+.+|.+|++||++.+.
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~--~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~   85 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD--RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT   85 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc--cceeeeeeccCcceeeeeeeeeeeecCCceEEEE
Confidence            58999999999999988899999999999999999999998753  5789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      +||+++||+.++.   ..|||+++|+|+|+|++|.
T Consensus        86 ipp~laYG~~g~~---~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          86 IRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             ECHHHhCCcCCCC---CccCcCCcEEEEEEEEEEe
Confidence            9999999998864   3699999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-22  Score=169.11  Aligned_cols=113  Identities=42%  Similarity=0.630  Sum_probs=104.2

Q ss_pred             eee--cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCc
Q 008400          265 EIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNE  342 (567)
Q Consensus       265 d~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE  342 (567)
                      |++  .|+++.++|+++|.|...|..+++|+|||++++.||++|+++.  +++.|++|.+|.+.+|+||+.+|.+|++||
T Consensus         4 d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~--~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge   81 (120)
T d1q1ca1           4 DISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSL--DRKDKFSFDLGKGEVIKAWDIAIATMKVGE   81 (120)
T ss_dssp             ECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEST--TSSSCEEEETTTTSSCHHHHHHHTTCCTTC
T ss_pred             eccCCCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEecc--ccccceeeecCCCceeeeeeeeeccccCCc
Confidence            444  4899999999999998889999999999999999999999875  367899999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          343 VALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       343 ~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      ++.|.|||+++||+.++.   ..|||+++|+|+|+|+++.
T Consensus        82 ~~~~~ip~~laYG~~g~~---~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          82 VCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             EEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEEECHHHhCCCcCCC---CCCCcCCcEEEEEEEEEEe
Confidence            999999999999998864   3699999999999999986

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.6e-21  Score=162.94  Aligned_cols=109  Identities=41%  Similarity=0.650  Sum_probs=99.0

Q ss_pred             ceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCC-----CCcccEEEEcCccchhhHHHHHHhccCCCcEEE
Q 008400          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (567)
Q Consensus       271 ~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~-----~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~  345 (567)
                      ++.|+|+++|+|...|..|+.|+|||++++.||++||++...     ....|++|.+|.+.+|+||+.+|..|++||++.
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            578999999999888999999999999999999999877431     346799999999999999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      |+|+|+++||+.+...  ..|||+++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEE
Confidence            9999999999987653  469999999999999976

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.8e-22  Score=167.12  Aligned_cols=110  Identities=38%  Similarity=0.598  Sum_probs=84.5

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      .|+++.++|+++|.|...|..|++|+|||++++.||++|+++.  +.+.|++|.+|.+.+|+||+.+|.+|++||++.++
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~--~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSH--DRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC--------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEE--ecceeeeeecCCCcEEeeeeeeehhccCCcEEEEE
Confidence            3789999999999998889999999999999999999998765  46789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      |||++|||+.+..   ..|||+++|+|+|+|++++
T Consensus        80 ip~~layG~~g~~---~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSL---PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCT---TTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCC---CcCCcCCeEEEEEEEEEEC
Confidence            9999999998864   3799999999999999874

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=3e-21  Score=161.54  Aligned_cols=107  Identities=31%  Similarity=0.682  Sum_probs=95.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCC---cchHHHHHHhcccccccEE
Q 008400           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---NVIKGWDIGIKTMKKGENA  109 (567)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~---~~i~gl~~~l~~m~~Ge~~  109 (567)
                      .+.++||+|+++++|+|...|..||.|.|||++++ +|++|+++     +..|.++.+   .+|+||++||.+|++||++
T Consensus         4 ~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~   77 (115)
T d1kt1a3           4 LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQC   77 (115)
T ss_dssp             TTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             cccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhcee
Confidence            35789999999999999778999999999999996 88888764     466777653   5899999999999999999


Q ss_pred             EEEecCCcccCCCCCCC-CCCCCCcEEEEEEEEEEee
Q 008400          110 VFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTS  145 (567)
Q Consensus       110 ~i~ip~~~ayg~~~~~~-~ip~~~~l~~~vel~~~~~  145 (567)
                      +|+|||++|||..+.++ .||++++|+|+|+|++|+.
T Consensus        78 ~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          78 ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999776 6999999999999999974

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.3e-21  Score=159.54  Aligned_cols=108  Identities=31%  Similarity=0.502  Sum_probs=100.7

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i  348 (567)
                      |+++.++++++|+|...|+.+++|+|||++++.||++|+++.  +...++.|.++.+.+++||+.+|..|++||++.+.+
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~--~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSV--DRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEST--TTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccc--cCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            789999999999998789999999999999999999998875  367899999999999999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCccEEEEEEEEEe
Q 008400          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (567)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (567)
                      ||+++||+.+...   .|||+++|+|+|+|+++
T Consensus        83 P~~laYG~~g~~~---~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          83 PGPYAYGPRGFPG---LIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTT---TBCTTCCEEEEEEEEEE
T ss_pred             chHHeecCcCCCC---ccCcCCeEEEEEEEEEe
Confidence            9999999998653   59999999999999876

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-21  Score=158.85  Aligned_cols=107  Identities=32%  Similarity=0.604  Sum_probs=98.5

Q ss_pred             ceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEEcC
Q 008400          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (567)
Q Consensus       271 ~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~  350 (567)
                      ++.++++++|+|...|..+++|+|||++++.||++|+++.  +++.|++|.+|.+.+++||+.+|..|++||++.|.|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~--~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSR--DRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeee--ccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECH
Confidence            5789999999998789999999999999999999999875  35789999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      +++||+.+..   ..|||+++|+|+|+|++++
T Consensus        79 ~laYG~~g~~---~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCC---CCCCcCCeEEEEEEEEEEC
Confidence            9999998864   3699999999999999863

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.84  E-value=9.7e-21  Score=158.38  Aligned_cols=110  Identities=35%  Similarity=0.657  Sum_probs=97.5

Q ss_pred             eeeecCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCcc---chhhHHHHHHhccCC
Q 008400          264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKK  340 (567)
Q Consensus       264 ~d~~~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~---~vi~gle~~l~~M~~  340 (567)
                      +|++.|+++.|+|+++|+|...|..+++|+|||++++ +|++|+++       ++.|.++.+   .+|+||+.+|.+|++
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-------~~~~~~~~~~~~~vi~G~~~~l~~M~~   73 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQR   73 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-------ccCceeeeccccccCchhHhhhccchh
Confidence            6788999999999999999889999999999999997 67777643       356777654   689999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeee
Q 008400          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (567)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (567)
                      ||++.|+|||+++||+.+..+  ..|||+++|.|+|+|+++.+
T Consensus        74 Ge~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          74 EEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TCEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEEC
T ss_pred             hceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999988653  46999999999999999975

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2e-20  Score=168.29  Aligned_cols=150  Identities=34%  Similarity=0.585  Sum_probs=133.5

Q ss_pred             ChHHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCC-CChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHH
Q 008400          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (567)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~  469 (567)
                      +.+..+..+..++..|+.+|+.|+|.+|+..|++||.+.+.... .........+.....+++|+|.||.++++|++|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            45677888999999999999999999999999999998764332 22234445677888899999999999999999999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008400          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (567)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~  540 (567)
                      +|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|..+...+..+..+++..++++++.|
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~y  169 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999988888776543

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-20  Score=154.88  Aligned_cols=107  Identities=32%  Similarity=0.645  Sum_probs=92.6

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccC---CcchHHHHHHhcccccccEEEE
Q 008400           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQ---GNVIKGWDIGIKTMKKGENAVF  111 (567)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~---~~~i~gl~~~l~~m~~Ge~~~i  111 (567)
                      .++||+|+++++|+|...|..||.|.|||++++.+|. |+++     +..+..+.   .++++||+++|.+|++|++++|
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            4699999999999997789999999999999986664 5443     34555554   3689999999999999999999


Q ss_pred             EecCCcccCCCCCCC-CCCCCCcEEEEEEEEEEeecc
Q 008400          112 TIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVK  147 (567)
Q Consensus       112 ~ip~~~ayg~~~~~~-~ip~~~~l~~~vel~~~~~~~  147 (567)
                      +|||++|||..+.+. .||++++++|+|+|++|.+.+
T Consensus        80 ~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          80 YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999998764 799999999999999998654

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-19  Score=148.92  Aligned_cols=108  Identities=38%  Similarity=0.707  Sum_probs=93.7

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCcc---chhhHHHHHHhccCCCcEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVA  344 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~---~vi~gle~~l~~M~~GE~~  344 (567)
                      .|+++.|+|+++|.|..+|..|+.|+|||++++.+++. +++       +..|..+..   .+|+||+.+|..|++||++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~-~~~-------~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~   77 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF-DQR-------ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   77 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEE-EEE-------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcE-eec-------cccceeeecceeeeCcHHHHhhhcchhhCeE
Confidence            68999999999999988999999999999999987754 432       245556543   6899999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCccEEEEEEEEEeeecc
Q 008400          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK  385 (567)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~  385 (567)
                      .+++||++|||+.+...  ..|||+++|+|+|+|+++.+.+
T Consensus        78 ~i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          78 IVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCC
T ss_pred             EEEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999988653  4799999999999999998754

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.78  E-value=4.2e-19  Score=156.29  Aligned_cols=112  Identities=24%  Similarity=0.399  Sum_probs=98.5

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      -+.++..+++++|.|...|..|++|+|||++++.||++|+++..  ...|  |.++.+.+|+||+.+|..|++||++.|+
T Consensus        32 ~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~--~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~~v~  107 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKP--TTFRPNEVIKGWTEALQLMREGDRWRLF  107 (160)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSC--EEECGGGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeecc--ccCc--cccCccccchhHHHHhcCccccceeEEE
Confidence            46789999999999977899999999999999999999987642  3444  6678889999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEeeeccc
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE  386 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~  386 (567)
                      |||+++||..+..   ..|||+++|+|+|+|+++.+...
T Consensus       108 iPp~laYG~~g~~---~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         108 IPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             ECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             eCHHHCcCCCCCC---CCcCcCCcEEEEEEEEEEecCCC
Confidence            9999999998754   36999999999999999975443

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.78  E-value=6.6e-19  Score=162.04  Aligned_cols=107  Identities=26%  Similarity=0.451  Sum_probs=97.2

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEEE
Q 008400          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (567)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i  348 (567)
                      +.++..+++++|.| .+|..+++|+|||.+++.||++|+++..  +..|++|.+|  .+|+||+.+|..|++|+++.+.|
T Consensus        97 ~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~--~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~i  171 (204)
T d1fd9a_          97 PSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEK--TGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYV  171 (204)
T ss_dssp             TTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHH--HCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             cCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEeccccc--CCCCceecCC--ccchhHHHHhcCCCCCCEEEEEE
Confidence            56799999999999 5799999999999999999999998764  5778888765  59999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCccEEEEEEEEEeee
Q 008400          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (567)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (567)
                      ||+++||+.++.   +.|||+++|+|+|+|+++.+
T Consensus       172 P~~laYG~~g~~---~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         172 PSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             CGGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             ChHHCcCCCCCC---CCcCcCCcEEEEEEEEEEEc
Confidence            999999998865   36999999999999999875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.4e-19  Score=148.46  Aligned_cols=115  Identities=23%  Similarity=0.259  Sum_probs=107.9

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..++++|+.+|+.|+|++|+..|+++|...|.+..               +|+++|.||+++++|.+|+.+|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---------------~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------------LYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---------------hhhcccccccccccccccchhhhhHHHh
Confidence            4677899999999999999999999999998876543               4999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      +|+++.+|+++|.++..+|+|++|+.+|+++++++|++..+...+.+++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999888764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-18  Score=151.46  Aligned_cols=124  Identities=25%  Similarity=0.404  Sum_probs=114.6

Q ss_pred             HHHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHH
Q 008400          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (567)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~  472 (567)
                      +..++.|..++.+||.+|+.|+|++|+..|++|+.+.|.+.               .+|+|+|.||+++|++++|+.+|+
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh---------------hhhhhhHHHHHhccccchHHHHHH
Confidence            45678999999999999999999999999999999987654               349999999999999999999999


Q ss_pred             HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008400          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (567)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  531 (567)
                      ++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+....++
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888655544

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2e-18  Score=159.42  Aligned_cols=106  Identities=31%  Similarity=0.541  Sum_probs=97.0

Q ss_pred             cCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccEEEEcCccchhhHHHHHHhccCCCcEEEEE
Q 008400          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (567)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~y~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (567)
                      -+.++..+++++|.| ..|..|++|+|||++++.||++|+++..  ++.|+.|.+|  .+|+||+.+|..|++|+++.+.
T Consensus       105 ~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~--~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             ccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeeccc--CCCcceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            367899999999999 6899999999999999999999998763  6789999986  5999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEEEee
Q 008400          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (567)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (567)
                      |||+++||+.+..    .|||+++|+|+|+|+++.
T Consensus       180 iP~~laYG~~g~~----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVP----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCC----CCCcCCcEEEEEEEEEEC
Confidence            9999999999863    499999999999999863

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=6.4e-19  Score=149.24  Aligned_cols=110  Identities=19%  Similarity=0.342  Sum_probs=98.4

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCcchHHHHHhh------ccCCc
Q 008400          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE  219 (567)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge  219 (567)
                      +.+.++..+++.+|+| ..|+.||.|++||++++.+|++|+++    .+..+.+|.+.++++|++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            4567899999999999 78999999999999999999999987    7889999999999999999865      99999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008400          220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (567)
Q Consensus       220 ~~~i~ip~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (567)
                      +++++|||++|||+.|.........|||+++|+|+|+|+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999999886433344569999999999999853

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.9e-17  Score=150.90  Aligned_cols=103  Identities=32%  Similarity=0.457  Sum_probs=96.8

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      |+.+++.|+.+|+.|+|++|+..|++||.+.|.+.               .+|+|+|.||+++|+|++|+.+|++|+.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~---------------~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            67799999999999999999999999999987654               459999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      |+++.+|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999999999988643

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.67  E-value=5.6e-18  Score=147.33  Aligned_cols=124  Identities=25%  Similarity=0.444  Sum_probs=90.5

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCccc
Q 008400           53 PENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (567)
Q Consensus        53 ~~~gd~V~v~Y~~~~~~g~~~~~t~~-------------~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ay  119 (567)
                      +++||.|.+||++++.||++|++|++             .+.|+.|.+|.++++|||++||.||++|++++|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            67899999999999999999999953             34799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEEEEeeccc-----c-ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008400          120 GESGSPPTIPPNATLQFDVELLSWTSVKD-----I-CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (567)
Q Consensus       120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~-----~-~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (567)
                      |+++..        +++.+....+.....     . ....+....+.+.        .++.|+++|||++++.++.++-
T Consensus        82 G~~d~~--------~v~~vp~~~f~~~~~~~~~~~~~~~~~~~~~V~~v--------~~~~v~vD~NHPlAG~~L~f~v  144 (151)
T d1ix5a_          82 GNRNEM--------LIQKIPRDAFKEADFEPEEGMVILAEGIPATITEV--------TDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             CSCCST--------TBCCEETHHHHTSTTCCCTTEEEESSSCEEEEEEE--------ETTEEEEECCCSSTTCCEEEEC
T ss_pred             cccccC--------ccceehhhhccccccccccceEEecCCCceEEEEE--------cCCEEEEECCCcCCCCeEEEEE
Confidence            998732        122222111110000     0 0001111222222        3478999999999999887654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.4e-16  Score=130.46  Aligned_cols=118  Identities=26%  Similarity=0.332  Sum_probs=102.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      +.|.++++.|+.+|..|+|++|+.+|++||++.|.+.               .+++|+|.||.++++|++|+.+|++++.
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---------------HHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            4688899999999999999999999999999877543               3599999999999999999999999999


Q ss_pred             cCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          477 LDSRNV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       477 ~~p~~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ++|.+.       ++|+++|.++..+++|++|+.+|++++..+|. .++...+..+.+.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            998774       57888999999999999999999999999875 466666666655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=120.93  Aligned_cols=113  Identities=16%  Similarity=0.210  Sum_probs=99.1

Q ss_pred             hhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc---cCHHHHHHHHHHHhccCC
Q 008400          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~~~~~al~~~p  479 (567)
                      -+..|.++..++|.+|.+.|++|+...|.+..               +++|+|.|+++.   +++.+|+..+++++..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~---------------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            35678899999999999999999998876543               489999999874   456689999999999988


Q ss_pred             CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          480 RN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       480 ~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ++  ..+||++|.+|..+|+|++|+.+|+++++++|+|..+...+..+..+++
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            66  4599999999999999999999999999999999999888888876654

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.51  E-value=8.2e-15  Score=114.08  Aligned_cols=85  Identities=22%  Similarity=0.430  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      ++..||.|.|+|+++. ||++|+++..  ..+.|.+|.++++|||+++|.||++|+++.|.|+++.+|+..+.     +|
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----aG   72 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QS   72 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----CC
Confidence            3678999999999996 9999998754  57999999999999999999999999999999999999998774     78


Q ss_pred             CcEEEEEEEEEEe
Q 008400          132 ATLQFDVELLSWT  144 (567)
Q Consensus       132 ~~l~~~vel~~~~  144 (567)
                      +++.|+|+|++++
T Consensus        73 k~~~f~V~v~~Vk   85 (85)
T d1hxva_          73 KPVTFEVVLKAIK   85 (85)
T ss_dssp             CCCEEEEEECCBC
T ss_pred             CcEEEEEEEEEeC
Confidence            9999999998763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.4e-13  Score=129.29  Aligned_cols=118  Identities=19%  Similarity=0.078  Sum_probs=106.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+..+|..+++.|+|++|+..|++|+.+.|.+.               .+|+++|.||.++|++++|+.+|+++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---------------HHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            4578889999999999999999999999999987654               3489999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      ++|+++.+++++|.+|..+|++++|+..|+++++++|++......+..+....
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999977665555544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.45  E-value=6.2e-14  Score=123.34  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=97.6

Q ss_pred             HHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHH
Q 008400          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (567)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a  474 (567)
                      ....+..++.+|+.+|..|+|++|+..|++|+.+.+.......   .........+|+|+|.||.++|+|++|+.+|+++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            3455667778899999999999999999999999887543211   1122334567999999999999999999999999


Q ss_pred             hccCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          475 LDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       475 l~~~p~-----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      |.+.|.           ..++|+++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            986432           256899999999999999999999999999976553

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.3e-13  Score=120.61  Aligned_cols=101  Identities=23%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..++++|..++..|+|+.|++.|.++.   +.+               ..+++|+|.||+++|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~---------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPH---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            346678899999999999999999998632   111               13488999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ++|+++.+|+++|.+|..+|+|++|+.+|++|+...+.|
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999999999999987765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=3.2e-13  Score=117.07  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=97.7

Q ss_pred             hhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhc----------cCHHHHHHHHHHHh
Q 008400          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVL  475 (567)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~----------~~~~~Ai~~~~~al  475 (567)
                      +..+-+.+.|++|+..|++|+...|.+...               ++|+|.+++.+          +.+++|+..|++|+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~---------------~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHH---------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            445667788999999999999998876644               88999999854          55689999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  534 (567)
                      +++|+++.+|+++|.+|..+|+           |++|+++|++|++++|+|..++..|..+.+..+...+
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764           7999999999999999999999888888666544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.36  E-value=8e-13  Score=109.08  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             hhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCC
Q 008400          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (567)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p  479 (567)
                      ....+.|..+++.|+|.+|+..|++++...|.+.               .+|+++|.|+.+++++++|+.+++++++++|
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   81 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDP   81 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccc---------------hhhhhhhhhhhhhhhHHHhhccccccccccc
Confidence            3346789999999999999999999999877543               4489999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008400          480 RNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (567)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (567)
                      ++..+++.+|.+|..+|++++|++.|+++|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999886

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.28  E-value=5.1e-13  Score=115.54  Aligned_cols=68  Identities=22%  Similarity=0.441  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~  231 (567)
                      ...|+.|++||++++.+|++|++|                 +|+.|++|.++++|||+++|.+|+.|+++++.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            457899999999999999999876                 589999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 008400          232 GEKGK  236 (567)
Q Consensus       232 g~~~~  236 (567)
                      |..+.
T Consensus        82 G~~d~   86 (151)
T d1ix5a_          82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             ccccc
Confidence            97543

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.26  E-value=9.3e-12  Score=96.43  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCC
Q 008400          169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVP  246 (567)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~ip  246 (567)
                      +..||.|+++|++.+ +|+.++++  +...+.+|.+.++|||+++|.+|++|+++.+.|++..+|+..+          .
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~----------l   70 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE----------L   70 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG----------G
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccccccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCccc----------C
Confidence            567999999999997 99998876  7889999999999999999999999999999999888998654          3


Q ss_pred             CCCeEEEEEEeecc
Q 008400          247 PNATLQIALELVSW  260 (567)
Q Consensus       247 ~~~~l~~~v~l~~~  260 (567)
                      ++.++.|+|+|.++
T Consensus        71 aGk~~~f~V~v~~V   84 (85)
T d1hxva_          71 QSKPVTFEVVLKAI   84 (85)
T ss_dssp             GSCCCEEEEEECCB
T ss_pred             CCCcEEEEEEEEEe
Confidence            68899999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.2e-11  Score=110.57  Aligned_cols=100  Identities=15%  Similarity=0.097  Sum_probs=90.7

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+.+.|+.++..|+|++|+..|++|+++.+...               .+|+|+|.||.++|+|++|+.+|++|+...+.
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~---------------~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh---------------hhHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            478999999999999999999999999877644               34999999999999999999999999987654


Q ss_pred             C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008400          481 N----------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       481 ~----------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n  515 (567)
                      +                ..+++++|.++..++++++|+..|.+|+++.|+.
T Consensus       103 n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            3                4789999999999999999999999999999885

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-11  Score=120.40  Aligned_cols=132  Identities=15%  Similarity=0.053  Sum_probs=87.9

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------C-hHHHHH------HHHHHHHHHhhHHH
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------G-DEEKKQ------AKALKVACNLNNAA  456 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~-~e~~~~------~~~~~~~~~~nla~  456 (567)
                      +.+..+...|..+.+.+.+++|+..|++||++.|.+...             . ++....      ...-...++.++|.
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            345556666777777888888888888888877654321             0 111111      11112445777777


Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      ++.++|++++|+.+++++++++|++..+|+++|.++..++++++|+.+|+++++++|+|..+...+..+...
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777776666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.8e-12  Score=121.92  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=92.5

Q ss_pred             hhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCC
Q 008400          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (567)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~  480 (567)
                      .+...|..++..|++++|+..|++++...+...               .+++++|.||.++|++++|+.+|+++++++|+
T Consensus       174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  238 (323)
T d1fcha_         174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQPG  238 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHHHHHHHhhhhcccccccccccccc---------------cchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence            456788999999999999999999998876533               34889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      ++.+|+++|.+|..+|++++|+..|++|++++|++..+...
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence            99999999999999999999999999999999998765443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-11  Score=96.32  Aligned_cols=89  Identities=19%  Similarity=0.119  Sum_probs=74.9

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      +..+.+.|..+++.|+|.+|+..|++|+++.+......        .....++.|+|.||.++|++++|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999987654321        1234678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhc
Q 008400          479 SRNVKALYRRAQAYIQM  495 (567)
Q Consensus       479 p~~~ka~~~~a~a~~~l  495 (567)
                      |+++.|+++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999988765544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.5e-11  Score=119.56  Aligned_cols=129  Identities=18%  Similarity=0.101  Sum_probs=95.2

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCC-------------ChHHHHHHH------HHHHHHHhhHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL  459 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~------~~~~~~~~nla~~~~  459 (567)
                      +..+...|..+++.|++++|+..|++|++..|.....             ..+.....+      .....++.+++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            4456677888888888888888888888876543211             000000000      112346778888888


Q ss_pred             hccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      ++|++++|+..++++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++..+...++.+..
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888877777766644

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=3.2e-10  Score=101.30  Aligned_cols=120  Identities=15%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccC-------CCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHH
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai  468 (567)
                      +...+.+...|+.++..|++++|+..|.+|+.+.+...       .....+...+......++.+++.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            45667889999999999999999999999999876432       12234566677888899999999999999999999


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCC
Q 008400          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA-------LEIDPDN  515 (567)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a-------l~l~P~n  515 (567)
                      .+|++++.++|.+..+|.+++.+|..+|++.+|+..|+++       +-++|..
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            9999999999999999999999999999999999999998       4567763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.7e-11  Score=119.08  Aligned_cols=80  Identities=13%  Similarity=0.060  Sum_probs=73.6

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD------LDLAEFDIKKALEIDPDNRDVKLE  521 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~------~~~A~~~~~~al~l~P~n~~~~~~  521 (567)
                      ..+|+|+|.++.++++|++|+.+|+++|+++|.+..||+++|.++..++.      +++|+..+.++++++|+|..+...
T Consensus       146 ~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~  225 (315)
T d2h6fa1         146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  225 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHH
Confidence            45699999999999999999999999999999999999999999998877      689999999999999999888888


Q ss_pred             HHHHHH
Q 008400          522 YKTLKE  527 (567)
Q Consensus       522 l~~~~~  527 (567)
                      ++.+..
T Consensus       226 l~~ll~  231 (315)
T d2h6fa1         226 LKGILQ  231 (315)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            877643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=8.5e-11  Score=111.12  Aligned_cols=122  Identities=11%  Similarity=-0.026  Sum_probs=99.1

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      ..+++.|+..+++++....    ..       ......+++++|.||.++|+|++|+.+|+++|+++|+++.+|+++|.+
T Consensus        12 ~~~~e~al~~~~e~l~~~~----~~-------~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~   80 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRA----LT-------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY   80 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSC----CC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhh----cC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchH
Confidence            4567788888888765322    11       123566789999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008400          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (567)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  545 (567)
                      |..+|++++|+.+|+++++++|++..+...++.+...+++..++ ...|.+.+.
T Consensus        81 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A-~~~~~~al~  133 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA-QDDLLAFYQ  133 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH-HHHHHHHHh
Confidence            99999999999999999999999998888888877666555433 345555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.15  E-value=2.6e-10  Score=93.58  Aligned_cols=86  Identities=15%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      ++++|.++.+.|++.+|+..+++++..+|+++.+|+.+|.++..++++++|+.+|++|++++|++..+...++.+...++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHH
Q 008400          531 EYNKKE  536 (567)
Q Consensus       531 ~~~~~e  536 (567)
                      +..++.
T Consensus        99 ~~~~A~  104 (112)
T d1hxia_          99 NANAAL  104 (112)
T ss_dssp             HHHHHH
T ss_pred             CHHHHH
Confidence            776553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-10  Score=114.72  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=98.6

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +.+.|+.+|+.|+|++|++.|+++++..|.+.               .+++++|.||.++|+|++|+..++++++++|++
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   66 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNT---------------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL   66 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            45789999999999999999999998876533               348899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      +.+++++|.+|..+|++++|+..+..+++.+|.+...........
T Consensus        67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  111 (388)
T d1w3ba_          67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL  111 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999976655554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=92.02  Aligned_cols=79  Identities=25%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  523 (567)
                      ++++|..++++|+|.+|+..+++|+++.|.+       ..+|+++|.+|..+|++++|+..|++||+++|++..+...+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            6799999999999999999999999886543       678999999999999999999999999999999999888887


Q ss_pred             HHHHHH
Q 008400          524 TLKEKM  529 (567)
Q Consensus       524 ~~~~~~  529 (567)
                      .+++.+
T Consensus        88 ~~~~~l   93 (95)
T d1tjca_          88 YFEYIM   93 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776654

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=9e-11  Score=94.60  Aligned_cols=88  Identities=26%  Similarity=0.501  Sum_probs=77.0

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008400           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (567)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (567)
                      ..++.||.|.|+|+++. ||+.+++...  ..+.|.+|.+.+++||+++|.||++|+++.|.+..+..|....+     +
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l-----a   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K   84 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT-----T
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh-----C
Confidence            46778999999999875 9998876533  56899999999999999999999999999999999999976554     7


Q ss_pred             CCcEEEEEEEEEEeec
Q 008400          131 NATLQFDVELLSWTSV  146 (567)
Q Consensus       131 ~~~l~~~vel~~~~~~  146 (567)
                      |..+.|.|+|.+++..
T Consensus        85 GK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          85 GKAAKFAINLKKVEER  100 (106)
T ss_dssp             TCCEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEeccc
Confidence            8999999999999763

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7e-10  Score=91.65  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +.+.|..+++.|+|++|+..|+++|.++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+...++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999988888888877


Q ss_pred             HHHHHHHHHHHHhhHhh
Q 008400          531 EYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       531 ~~~~~e~~~~~~~f~~~  547 (567)
                      ..+++. ..|.+.....
T Consensus        86 ~~~~A~-~~~~~a~~~~  101 (117)
T d1elwa_          86 RFEEAK-RTYEEGLKHE  101 (117)
T ss_dssp             CHHHHH-HHHHHHHTTC
T ss_pred             CHHHHH-HHHHHHHHhC
Confidence            766543 4566665443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.5e-10  Score=111.62  Aligned_cols=100  Identities=17%  Similarity=0.077  Sum_probs=93.0

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      ..++|..+++.|+|++|+..|+++++..|.+.               .+|.++|.||..+|++++|+.++.++++++|++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM---------------EAWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            46789999999999999999999999877643               348999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      ..+++++|.+|..+|++++|+..|++++.++|.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccccccccccccccchhhHHHhccchH
Confidence            99999999999999999999999999999998853

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=4.7e-10  Score=101.62  Aligned_cols=94  Identities=15%  Similarity=0.183  Sum_probs=83.9

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +.+.|.++++.|+|++|+..|++||.++|+++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            55889999999999999999999999999999999999999999999999999999999999999988888888888877


Q ss_pred             HHHHHHHHHHHHhhH
Q 008400          531 EYNKKEAKFYGNMFA  545 (567)
Q Consensus       531 ~~~~~e~~~~~~~f~  545 (567)
                      +..++. ..|++...
T Consensus        87 ~~~~A~-~~~~~al~  100 (201)
T d2c2la1          87 SYDEAI-ANLQRAYS  100 (201)
T ss_dssp             CHHHHH-HHHHHHHH
T ss_pred             CHHHHH-HHHHHHHH
Confidence            766544 45555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.6e-10  Score=96.76  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +...|.+|++.|+|++|+..|+++++++|+++.+|+++|.+|+.+|++++|+.+|++|++++|++..+...++.+...++
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            55789999999999999999999999999999999999999999999999999999999999999988888888877766


Q ss_pred             HHHHHHHHHHHHhhH
Q 008400          531 EYNKKEAKFYGNMFA  545 (567)
Q Consensus       531 ~~~~~e~~~~~~~f~  545 (567)
                      +..++. ..|.+...
T Consensus        93 ~~~eA~-~~~~~a~~  106 (159)
T d1a17a_          93 KFRAAL-RDYETVVK  106 (159)
T ss_dssp             CHHHHH-HHHHHHHH
T ss_pred             CHHHHH-HHHHHHHH
Confidence            665443 23444443

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.99  E-value=1.1e-10  Score=95.38  Aligned_cols=87  Identities=23%  Similarity=0.487  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEccCCcchHHHHHHhcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008400           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (567)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~~g~~~~~t~~~~~p~~~~lG~~~~i~gl~~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (567)
                      .++.||.|.|+|+++. ||+.++....  ..+.|.+|.+.++|||+++|.||++|+++.|.++.+..|.....     +|
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----aG   94 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----KG   94 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----SS
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----CC
Confidence            5789999999999985 8998876643  57999999999999999999999999999999999999977664     78


Q ss_pred             CcEEEEEEEEEEeec
Q 008400          132 ATLQFDVELLSWTSV  146 (567)
Q Consensus       132 ~~l~~~vel~~~~~~  146 (567)
                      .++.|.|+|.+++..
T Consensus        95 k~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          95 KAAKFAIKVNKVEAR  109 (113)
T ss_dssp             CEEEECCCEEEEEEE
T ss_pred             CeEEEEEEEEEEEec
Confidence            999999999998763

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.9e-10  Score=93.76  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=71.3

Q ss_pred             HhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +-++|.++++.++|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|++|++++|++......+..+...+.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999998765555555444333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=8.9e-09  Score=90.75  Aligned_cols=92  Identities=15%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      ...+..+.++|..+++.|+|.+|+..|++||++.|...               .+|+++|.||.++++|++|+.++++++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---------------~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT---------------KALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh---------------hHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            34566778899999999999999999999999877543               349999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008400          476 DLDSRNVKALYRRAQAYIQMADLDLAE  502 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~  502 (567)
                      +++|+|..++..++.++..+..+.++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=3.4e-08  Score=94.97  Aligned_cols=108  Identities=12%  Similarity=-0.021  Sum_probs=81.2

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+...|+.+...++|++|+..|.+|+.+.......         .....+|.|+|.||.+++++++|+.+++++++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            346678888888889999999999999999886543321         22455688888888888888888888888877


Q ss_pred             cCCCC------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCC
Q 008400          477 LDSRN------VKALYRRAQAYIQ-MADLDLAEFDIKKALEIDP  513 (567)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P  513 (567)
                      +.+.+      ..++.++|.+|.. ++++++|+..|++|+++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            65443      5677777777754 6888888888888877643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.70  E-value=3.1e-08  Score=87.07  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..+..+.++|.++++.++|.+|+..|++++.+.|.+.               .+++++|.||..+|+|++|+.+|.+++.
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~---------------~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455677899999999999999999999999877543               4599999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHH
Q 008400          477 LDSRNVKALYRRAQAYIQMADLDL  500 (567)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~  500 (567)
                      ++|+|..++..++.+...++++.+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999888777766544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.6e-08  Score=105.35  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=80.0

Q ss_pred             hhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC
Q 008400          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (567)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~  481 (567)
                      +.+.|..+.+.+++..|+..|.+++...                 ...++.++|.++..+++|++|+.+|.+|++++|++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYI-----------------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             --------------------CCHHHHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            4444555555555555555555555432                 23468899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      ..+|+++|.++...|++.+|+.+|.+|+.++|....++..|..+..+.
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998888887765543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.6e-08  Score=87.82  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=79.4

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+.+.|.++++.|+|.+|+..|++||.+.|.+.               .+++++|.||..+|+|++|+.+|++++++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~---------------~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccch---------------hhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            345567899999999999999999999999977543               35999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHH
Q 008400          478 DSRNVKALYRRAQAYIQMADLDLAE  502 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~  502 (567)
                      +|+|..+...++.++..+.++.+..
T Consensus       126 ~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         126 YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887776554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.59  E-value=4e-08  Score=84.96  Aligned_cols=84  Identities=11%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhcc
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~  477 (567)
                      .+..+.++|..+++.|+|.+|+..|.+||.+.|.+.               .+|+++|.||..+|+|++|+.+|.+++++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~---------------ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---------------KALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhh---------------hhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677899999999999999999999999877543               45999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcC
Q 008400          478 DSRNVKALYRRAQAYIQMA  496 (567)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~  496 (567)
                      +|+|..+...++.+...+.
T Consensus       131 ~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999988888776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.55  E-value=1.6e-07  Score=80.29  Aligned_cols=74  Identities=12%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             HHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008400          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----------ADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (567)
Q Consensus       457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l----------~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  526 (567)
                      -+.+++.|++|+..+++|++++|+++.+++++|.++..+          +.+++|+..|++|++++|++..+...++.+.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456788899999999999999999999999999999865          4568999999999999999999988888876


Q ss_pred             HHHH
Q 008400          527 EKMK  530 (567)
Q Consensus       527 ~~~~  530 (567)
                      ..+.
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=2.1e-07  Score=89.25  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh-ccCHHHHHHHHHHH
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKV  474 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~a  474 (567)
                      ...+..+.+.|+.+.+.|++++|+..|++++.+.+.....         .....++.++|.+|.. +++|++|+..+.+|
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            3457788999999999999999999999999998765432         2344568889988865 69999999999999


Q ss_pred             hccCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008400          475 LDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (567)
Q Consensus       475 l~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~  516 (567)
                      +.+.+.      ...++.++|.+|..+|+|++|+..|++++.+.|.+.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            887432      256789999999999999999999999999988874

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=3.8e-07  Score=74.02  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=70.0

Q ss_pred             HHhhHHHHHHhc---cCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          450 CNLNNAACKLKL---KDYKQAEKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       450 ~~~nla~~~~k~---~~~~~Ai~~~~~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      ..+|.|-|..+.   .+..+++..+..+++.+|.+ ..++|.+|.+|+++|+|++|+.+++++|+++|+|..+..+...+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            357788887765   45679999999999999876 48999999999999999999999999999999999888887777


Q ss_pred             HHHHH
Q 008400          526 KEKMK  530 (567)
Q Consensus       526 ~~~~~  530 (567)
                      ..++.
T Consensus       117 e~~~~  121 (124)
T d2pqrb1         117 EDKIQ  121 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.6e-07  Score=77.62  Aligned_cols=84  Identities=15%  Similarity=0.079  Sum_probs=68.4

Q ss_pred             HhhhhhhhhHHHhc---CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHh
Q 008400          399 AGKKKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (567)
Q Consensus       399 a~~~~~~G~~~~~~---g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al  475 (567)
                      +..+.+.|..+++.   +++++|+..|++++...+.             .....+++|+|.||.++|+|++|+.+++++|
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-------------~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-------------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45677888888874   4567799999999875432             2234568999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhc
Q 008400          476 DLDSRNVKALYRRAQAYIQM  495 (567)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l  495 (567)
                      +++|+|..|+..++.+..++
T Consensus       100 ~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         100 QTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHH
Confidence            99999999998888776543

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=3.2e-07  Score=73.24  Aligned_cols=84  Identities=15%  Similarity=0.263  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      ....||.|+++|++.. +|+.+...  +...+.+|.+.+++||+++|.||+.|+++.+.+.--..|...          -
T Consensus        14 ~a~~GD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~----------~   82 (106)
T d1l1pa_          14 AVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE----------N   82 (106)
T ss_dssp             SCCTTEEEEEEEECCS-SSSCCSTTEEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCT----------T
T ss_pred             cccCCCEEEEEEEEEE-CCEECCCCcccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCch----------h
Confidence            4567999999999876 78877643  778999999999999999999999999999999522245322          2


Q ss_pred             CCCCeEEEEEEeecccc
Q 008400          246 PPNATLQIALELVSWKT  262 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (567)
                      .++.++.|.|++.++..
T Consensus        83 laGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          83 LKGKAAKFAINLKKVEE   99 (106)
T ss_dssp             TTTCCEEEEEEEEEEEC
T ss_pred             hCCCEEEEEEEEEEecc
Confidence            47889999999998643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=4.5e-07  Score=88.56  Aligned_cols=118  Identities=13%  Similarity=0.042  Sum_probs=99.6

Q ss_pred             HHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhcc--CHHHHHHHHHHHh
Q 008400          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVL  475 (567)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~~~~Ai~~~~~al  475 (567)
                      ....+...+..+...+++.+|+..|+++++..|.+..               ++++++.++..++  ++.+|+..|++++
T Consensus        72 ~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~al  136 (334)
T d1dcea1          72 VLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWARELELCARFL  136 (334)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH---------------HHHHhhHHHHHhccccHHHHHHHHHHHH
Confidence            3455566677788888999999999999988775443               3778888877776  4899999999999


Q ss_pred             ccCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008400          476 DLDSRNVKAL-YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (567)
Q Consensus       476 ~~~p~~~ka~-~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  530 (567)
                      +++|.+..++ +++|.++...+++++|+.+++++++++|+|..+...++.+...++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999998886 577899999999999999999999999999999888888766654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=2.9e-07  Score=90.00  Aligned_cols=102  Identities=7%  Similarity=-0.122  Sum_probs=83.8

Q ss_pred             HHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 008400          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (567)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~  488 (567)
                      +...+.+.+|+..|.+++...+.....               +.+++.++..++++.+|+..+.+++..+|.+..+++.+
T Consensus       218 ~~~l~~~~~a~~~~~~~l~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  282 (334)
T d1dcea1         218 AFFTDPNDQSAWFYHRWLLGRAEPLFR---------------CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL  282 (334)
T ss_dssp             HHHHCSSCSHHHHHHHHHHSCCCCSSS---------------CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHhCcchhhH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHH
Confidence            344455556666666666555544433               67899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008400          489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (567)
Q Consensus       489 a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  525 (567)
                      |.+|..+|++++|+++|++|++++|.+......++..
T Consensus       283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            9999999999999999999999999987766655443

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.23  E-value=3.8e-07  Score=73.83  Aligned_cols=83  Identities=11%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008400          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (567)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ip~~~~~g~~~~~~~~~~~~i  245 (567)
                      .+..||.|+++|++.. +|+.+...  ..+.+.+|.+.++++|+++|.||+.|+++.+.++--..|....          
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~----------   91 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----------   91 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----------
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCCccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc----------
Confidence            4678999999999987 67777654  7788999999999999999999999999999885222454322          


Q ss_pred             CCCCeEEEEEEeeccc
Q 008400          246 PPNATLQIALELVSWK  261 (567)
Q Consensus       246 p~~~~l~~~v~l~~~~  261 (567)
                      -++.++.|.|.+..+.
T Consensus        92 laGk~~~f~v~v~~Ik  107 (113)
T d1t11a3          92 LKGKAAKFAIKVNKVE  107 (113)
T ss_dssp             TSSCEEEECCCEEEEE
T ss_pred             cCCCeEEEEEEEEEEE
Confidence            3678999999998764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.18  E-value=3.9e-07  Score=85.94  Aligned_cols=92  Identities=12%  Similarity=0.012  Sum_probs=78.7

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka  484 (567)
                      ++..+++.|++++|+..|+++++..|.+...               +.+++.+++..|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~a---------------r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            3567888999999999999999998876543               8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008400          485 LYRRAQAYIQMADLDLAEFDIKKALEI  511 (567)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (567)
                      +..++.++...+..+++...+.+...+
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhcc
Confidence            999999988888877776665554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.9e-06  Score=81.83  Aligned_cols=105  Identities=19%  Similarity=0.094  Sum_probs=86.4

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc--
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--  476 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~--  476 (567)
                      +..+...|..+...++++.|...|.+++...+.....           ....+.++|.++..+|++++|+..+++++.  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-----------LQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3455677888889999999999999988765543321           234477899999999999999999999984  


Q ss_pred             ----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008400          477 ----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (567)
Q Consensus       477 ----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  514 (567)
                          ..|....+++.+|.+|..+|++++|+..|++|+++.+.
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence                34566789999999999999999999999999998543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.12  E-value=2.9e-06  Score=73.01  Aligned_cols=96  Identities=13%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHhccCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----
Q 008400          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRN------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----  515 (567)
Q Consensus       453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n-----  515 (567)
                      ..|..++..|+|++|+..|++||++.|++            ..+|.++|.+|..+|+|++|+.++++++++.|.+     
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            44888889999999999999999988764            3689999999999999999999999999875431     


Q ss_pred             --H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008400          516 --R----DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKS  549 (567)
Q Consensus       516 --~----~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~  549 (567)
                        .    .+...++.+...+++.++ ....|.+...-...
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~ee-A~~~~~~Al~l~~~  132 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAE-AMPEFKKVVEMIEE  132 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHhhHH
Confidence              1    123334455555554443 33456665554433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1e-05  Score=77.71  Aligned_cols=106  Identities=9%  Similarity=0.005  Sum_probs=89.3

Q ss_pred             HHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhc
Q 008400          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (567)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~  476 (567)
                      ..++...-+|..++..|++++|+..|++|+...+.+..          .....++.++|.+|..+|++++|+..+.+++.
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34555666799999999999999999999998765331          23456788999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008400          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (567)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (567)
                      +.+..      ..++++++.++...+++..|...+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            75432      5678899999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.09  E-value=6.8e-06  Score=77.13  Aligned_cols=72  Identities=11%  Similarity=0.112  Sum_probs=66.1

Q ss_pred             HHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      .-.++.|++++|+..++++++.+|++..++..+|.+|+..|++++|+..|+++++++|++..+...+..+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999888777766643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.3e-06  Score=90.35  Aligned_cols=83  Identities=11%  Similarity=-0.064  Sum_probs=55.0

Q ss_pred             HHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008400          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (567)
Q Consensus       450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  529 (567)
                      .+.|+|.++.+.+++..|+..+.+++..++  ..+++++|.++..+++|++|+.+|++|++++|++......++.+....
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             ---------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            478999999999999999999999998776  479999999999999999999999999999999999999999887666


Q ss_pred             HHHHH
Q 008400          530 KEYNK  534 (567)
Q Consensus       530 ~~~~~  534 (567)
                      ++..+
T Consensus       200 ~~~~~  204 (497)
T d1ya0a1         200 GDHLT  204 (497)
T ss_dssp             TCHHH
T ss_pred             CCHHH
Confidence            55543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=4e-05  Score=67.22  Aligned_cols=98  Identities=11%  Similarity=-0.017  Sum_probs=81.4

Q ss_pred             HHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCC----------------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 008400          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----------------------VKALYRRAQAYIQMADLDLAEFDI  505 (567)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~  505 (567)
                      ...+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3447789999999999999999999999987643                      268899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008400          506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (567)
Q Consensus       506 ~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  546 (567)
                      +++++++|.+..++..+..+....++..+.. ..|.++-+.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl-~~y~~~~~~  130 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDAL-GAYRRVKTT  130 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence            9999999999999999888877776655433 355555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=5.9e-05  Score=72.18  Aligned_cols=131  Identities=9%  Similarity=0.012  Sum_probs=88.7

Q ss_pred             hhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHH-hccCHHHHHHHHHHHhccCCCCH
Q 008400          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL-KLKDYKQAEKLCTKVLDLDSRNV  482 (567)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~-k~~~~~~Ai~~~~~al~~~p~~~  482 (567)
                      ..++...+.++++.|...|.+|+...+....               .+.+.|.... ..++.+.|...+++++...|.++
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKAREDARTRHH---------------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH
Confidence            3344444555666666666666655443331               2455555433 35789999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMKSR  550 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~----~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~  550 (567)
                      ..+...+..+...|+++.|+..|++|++..|.++    .+...+.......+... .-.+.++++...+...
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~-~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA-SILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCccc
Confidence            9999999999999999999999999999877553    35555555544443333 2345667666665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=5.6e-05  Score=72.36  Aligned_cols=128  Identities=12%  Similarity=0.066  Sum_probs=88.0

Q ss_pred             hhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHH
Q 008400          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (567)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka  484 (567)
                      .+......|+++.|...|.+++...+.+.              ..++...+.+..+.++++.|+..+.+++...|.+...
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~  170 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Confidence            34444456777777777777776544322              1235667777778888888888888888888888888


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 008400          485 LYRRAQAYI-QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (567)
Q Consensus       485 ~~~~a~a~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  547 (567)
                      +...|.... ..++.+.|...|+++++..|.+..+...+.......++.. +.+..|.+.....
T Consensus       171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~-~aR~~fe~ai~~~  233 (308)
T d2onda1         171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN-NTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhC
Confidence            887777643 4578888888888888888888777777766655554333 3455666665544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=8.1e-05  Score=59.97  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             hhhhhhHHHhc---CcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccC
Q 008400          402 KKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (567)
Q Consensus       402 ~~~~G~~~~~~---g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~  478 (567)
                      .++-|-.+.+.   .+.++|+..++.+++..+.              ....+++++|.+|+++|+|++|+.+|+++|+++
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~--------------~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--------------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch--------------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34445555544   3456788888777764332              134568999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 008400          479 SRNVKALYRRAQAY  492 (567)
Q Consensus       479 p~~~ka~~~~a~a~  492 (567)
                      |+|..|...+-.+.
T Consensus       104 P~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         104 RNNKQVGALKSMVE  117 (124)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            99998876655543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=0.0011  Score=61.08  Aligned_cols=98  Identities=19%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             HhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHh----ccCHHHHHHHHHHH
Q 008400          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKV  474 (567)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k----~~~~~~Ai~~~~~a  474 (567)
                      +..+...|..++++++|.+|++.|++|.+...                 ..+++++|.+|..    .+++..|..++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-----------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-----------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            34678899999999999999999999986522                 2347899999998    77999999999998


Q ss_pred             hccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC
Q 008400          475 LDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDN  515 (567)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n  515 (567)
                      ...  .++.+.+++|..+..    ..+++.|...++++.+..+..
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            764  578999999988875    468899999999998875443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.07  E-value=0.0016  Score=53.45  Aligned_cols=60  Identities=13%  Similarity=0.025  Sum_probs=37.0

Q ss_pred             HhhHHHHHHh----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 008400          451 NLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEID  512 (567)
Q Consensus       451 ~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~  512 (567)
                      ++++|.+|..    ..++.+|+.+++++.+.  .++.+.+++|.+|..    ..++.+|+.+|++|.++.
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            5566666654    34566666666666553  456666666666665    356666666666666553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.00097  Score=61.52  Aligned_cols=74  Identities=16%  Similarity=0.101  Sum_probs=60.8

Q ss_pred             HHHHhhHHHHHHh----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 008400          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVK  519 (567)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~n~~~~  519 (567)
                      ..+++++|.+|..    .+++..|+.++.++.+.  .++.|++++|.+|..    ..++++|..+|++|..+....  +.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~--A~  253 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG--AC  253 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH--HH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH--HH
Confidence            4457899999987    67999999999999886  579999999999986    458999999999999886443  55


Q ss_pred             HHHHHH
Q 008400          520 LEYKTL  525 (567)
Q Consensus       520 ~~l~~~  525 (567)
                      ..|..+
T Consensus       254 ~~l~~l  259 (265)
T d1ouva_         254 DILKQL  259 (265)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.77  E-value=0.0035  Score=51.22  Aligned_cols=93  Identities=17%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             cCcHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhhHHHHHHhccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008400          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (567)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~a~a  491 (567)
                      ..++++|++.|++|.+.-.  ..               ++++++.  ....++++|+..++++.+.  .++.+++++|..
T Consensus         6 ~kd~~~A~~~~~kaa~~g~--~~---------------a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~   64 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE--MF---------------GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TT---------------HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCC--hh---------------hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHh
Confidence            3588999999999987532  11               1445543  4467899999999999874  689999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008400          492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (567)
Q Consensus       492 ~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  527 (567)
                      |..    ..++++|+.+|+++.+.  .+..+...|..+..
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHH
Confidence            987    57899999999999986  45566666666543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=0.77  Score=34.02  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             HHHHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      ..+..|..+..+|..+-..|+|.+|+.+|..|++++..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999999998654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.11  E-value=0.68  Score=32.83  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             HHHHhhhhhhhhHHHhcCcHHHHHHHHHHHHHhhhc
Q 008400          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (567)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (567)
                      +..|-.+-.++..+.+.|+|++||+++.+|..++..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            566777888899999999999999999999987653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.14  E-value=3.3  Score=38.38  Aligned_cols=46  Identities=15%  Similarity=0.084  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008400          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (567)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  528 (567)
                      .-+--.-..|...|.+++.+..|+.++.+++.+..+...+..+..+
T Consensus       100 d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         100 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            3344455667777888888888888887777777776666655443