Citrus Sinensis ID: 008415

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
Protein Sequence
MGNLISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEIEEQRPRTRRTNQVAGWLEDVQKLETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSSRCRTWG
Secondary Structure (PSIPRED)
ccccEEEcccccHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEEcHHHHHHHHHHHccccccccccEEEccccEEEcccccccccEEEEEEEccccccccccccccccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccHHHHHHHcccccccEEEEEEcccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEccccccEEcccccccccEEEccccccccccccEEEEcccccccEEcccccccccccEEEEEccccccccccccccccccEEEEEccHHHHcccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccEEcHcccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHEEEEEEcccccHcccccccccccEEEEEEccccccccHHHHHHcccEEEEEccccccHccccccHHcccHHHHHHHHcEEEEccccHHHHcccHHHHHHHHcccEEEccccccccccccccccccccHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHEEEccccccccccccHcccHcHHHccEEEcccccccEEEEcccccccccccccccccEEEEEcccccccccccHcccccccEEEEcccHcHHHcccHcccccccccccccccccHcccEEEEcccHcHHHccccccccccccEEEEccccHHHccccccccHHccEEEEcccHHHHHHcccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
mgnlistflpadlfdrtsncvgeqAKYVWGLEKNLRVLETELHKLTRARADLKTKVEieeqrprtrrtnqvAGWLEDVQKLETEYTELERDRAQEMDRLClgglcsknfvsnseipkrqLIDYWIsegfvcdfddgcDFIDDLLQACLLeeegddhvKMHDMIREMSLWIACTVDKEEQNFLVHAGvelteapkfeewegaKRVSLmgngirslseiptcprlVTLLlggnrieeitdgFFQSMSTLRVLSLRINIslrklpsgirglPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWvvteeegnvlceDAEPLMKELlgskhlnvlSWTFRSslgvqnflkypklVSITQSVLvksgvhtsppfnVLHLAYMENLQKFELEscnleemkIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLkvlrigdcydmeeiisvdkLRDISVIIGSEHNFFAQLEYLSIswgtnlksvypnplpfpklkkidvchcpqlkklplnsssakERRVVIEGEKKWWEELQWEDQATQNAFSSRCRTWG
Flexible Loop (DISEMBL)
mgnlistflpadlfdrTSNCVGEQAKYVWGLEKNLRVLETELHKltraradlktkveieeqrprtrrtnqvagwledvqKLETEYTELERDRAQEMDRLCLGGLcsknfvsnseiPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVelteapkfeeweGAKRVSLMGNGirslseiptcPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIslrklpsgirglpQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPqlkklplnsssakerrVVIEGEKKWWEelqwedqatqnafssrcrtwg
Low Complexity Region (SEG)
MGNLISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEIEEQRPRTRRTNQVAGWLEDVQKLETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEgfvcdfddgcdfiddLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSSRCRTWG
Disordered region (IsUnstruct)
***LISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARA********************VAGWLEDVQKLETEYTEL*****QEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLP*********RVVIEGEKKWWEELQWED***************
Disordered Region (DISOPRED)
****ISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEIEEQRPRTRRTNQ*AGWLEDVQKLETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRD***IIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL************EGEKKWWEELQWEDQATQNAFSSRCRTWG
Disordered Region (DISEMBL)
MGNLISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEI**********NQVAGWLEDVQKLETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL*********VVIEGEKKWWEELQWEDQA*************
Disordered Region (DISPRO)
*GNLISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEIEEQRPRTRRTNQVAGWLEDVQKLETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSSRCRT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNLISTFLPADLFDRTSNCVGEQAKYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPRTRRTNQxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSSRCRTWG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	566	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.754	0.480	0.365	5e-69
O64973	889	Disease resistance protei	no	no	0.756	0.481	0.359	3e-59
Q8L3R3	885	Disease resistance protei	no	no	0.768	0.491	0.361	1e-57
Q9FLB4	874	Putative disease resistan	no	no	0.765	0.495	0.336	7e-57
P60838	894	Probable disease resistan	no	no	0.749	0.474	0.367	1e-55
Q9C8T9	898	Putative disease resistan	no	no	0.745	0.469	0.340	1e-53
P60839	884	Probable disease resistan	no	no	0.749	0.479	0.338	5e-52
O82484	892	Putative disease resistan	no	no	0.770	0.488	0.324	1e-51
Q9SI85	893	Probable disease resistan	no	no	0.749	0.474	0.315	3e-51
Q9LVT3	948	Probable disease resistan	no	no	0.770	0.459	0.316	3e-51

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 174/476 (36%), Positives = 265/476 (55%), Gaps = 49/476 (10%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCDF-----DDGCDFIDDLLQACLLEEEGDDHVKMHDMI 163
           F  +  I K  L+DYWI EGF+        + G + I  L+++CLL EE  + VKMHD++
Sbjct: 416 FPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVV 475

Query: 164 REMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRL 223
           REM+LWIA    K+++NF+V AG++    P+ E+W+ A+RVSLM N I S+ + P  P+L
Sbjct: 476 REMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL 535

Query: 224 VTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP----------------SGIRG 267
           +TLLL  N +  I+  FF+ M  L VL L +N  LR LP                + IR 
Sbjct: 536 ITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRI 595

Query: 268 LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCED 327
            P  L  L KL YLNL+YTR +  I    ISG + L+VLRLF  GF             +
Sbjct: 596 WPAGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSGF------------PE 641

Query: 328 AEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLH- 386
              ++ EL   ++L  L+ T   +  ++ FL   +L S T+++ ++   + +P  +V+  
Sbjct: 642 DPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIE---NLNPQSSVISF 698

Query: 387 LAYMENLQKFELESCNLEEMKIDSTEEVKKLF----QSGFRSLNTVSVHYCRKAKDLTWL 442
           +A M++LQ+      ++ E+K+   E V  L      + F +L+ VS+ +C + +DLTWL
Sbjct: 699 VATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWL 758

Query: 443 VFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN 502
           +F  NL VLR+    D++E+I+ +K    ++I       F +L+ L +     LK ++  
Sbjct: 759 IFAPNLTVLRVISASDLKEVINKEKAEQQNLIP------FQELKELRLENVQMLKHIHRG 812

Query: 503 PLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAF 558
           PLPFP L+KI V  C +L+KLPLN +S     +VIE  KKW E L+WED+AT+  F
Sbjct: 813 PLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  230 bits (586), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 178/495 (35%), Positives = 249/495 (50%), Gaps = 67/495 (13%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVC-------DFDDGCDFIDDLLQACLL--EEEGDDHVKM 159
           F  +  I K  L+DYWISEGF+        + + G + I  L++ACLL  EE    +VKM
Sbjct: 418 FPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKM 477

Query: 160 HDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPT 219
           HD++REM+LWI+  + K+++  +V AGV L E PK ++W   +++SLM N I  + +   
Sbjct: 478 HDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHE 537

Query: 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279
           C  L TL L  N + +I+  FF+ M  L VL L  N SL +LP       +E+  L  LR
Sbjct: 538 CAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELP-------EEISELASLR 590

Query: 280 YLNLDYTRFLSIIPHQL-----------------------ISGFSKLEVLRLFGCGFWVV 316
           Y NL YT       HQL                       I G S L  LR  G      
Sbjct: 591 YFNLSYTCI-----HQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGL----- 640

Query: 317 TEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGV 376
              +  +L + +  L+KEL   +HL V++    SSL  +  L   +LV   + V  K   
Sbjct: 641 --RDSRLLLDMS--LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLK 696

Query: 377 HTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSG----FRSLNTVSVHY 432
             S    VL L  M NL+K  ++ C + E+KI+ T       +S     F +L+ V +  
Sbjct: 697 EES--VRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAK 754

Query: 433 CRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISW 492
           C   KDLTWL+F  NL  L +G   ++E+IIS +K  + S  I      F +LE L +  
Sbjct: 755 CHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFE 810

Query: 493 GTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSS--AKERRVVIEGEKKWWEELQWE 550
              LK +Y   L FP LK I V  C +L+KLPL+S S  A E  V+  GE++W E ++WE
Sbjct: 811 LRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWE 870

Query: 551 DQATQNAF--SSRCR 563
           DQATQ  F  SSR R
Sbjct: 871 DQATQLRFLPSSRWR 885

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 176/487 (36%), Positives = 250/487 (51%), Gaps = 52/487 (10%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCD-------FDDGCDFIDDLLQACLLEEEGDDH--VKM 159
           F  + EI K  LI+YWI EGF+ +       F+ G D +  L+++ LL E   D   V M
Sbjct: 417 FPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSM 476

Query: 160 HDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPT 219
           HDM+REM+LWI   + K ++  +V AG+ L E P+ E W   KR+SLM N    +   P 
Sbjct: 477 HDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPE 536

Query: 220 CPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLP--------------SG 264
           C  L+TL L  N ++ +I+  FF+ M +L VL L  N SL +LP              SG
Sbjct: 537 CVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSG 596

Query: 265 --IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
             I  LP  L  L KL +L L+ TR L     + ISG S L  LR         T + G 
Sbjct: 597 TYIERLPHGLHELRKLVHLKLERTRRL-----ESISGISYLSSLRTLRLRDSKTTLDTG- 650

Query: 323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP- 381
                   LMKEL   +HL +++    S L V     YP++    Q + ++   H   P 
Sbjct: 651 --------LMKELQLLEHLELITTDISSGL-VGELFCYPRVGRCIQHIYIRD--HWERPE 699

Query: 382 --FNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439
               VL L  + NL    + +C + E+ I+ T   K L    F +L+ V +  C   KDL
Sbjct: 700 ESVGVLVLPAIHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDL 759

Query: 440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV 499
           TWL+F  NL  LR+  C  +E+IIS +K    + ++  E   F +LE L++   + LKS+
Sbjct: 760 TWLLFAPNLINLRVWGCKHLEDIISKEK---AASVLEKEILPFQKLECLNLYQLSELKSI 816

Query: 500 YPNPLPFPKLKKIDVC-HCPQLKKLPLNSSSA--KERRVVIEGEKKWWEELQWEDQATQN 556
           Y N LPF +L+ +D+  +CP+L+KLPL+S S    E  V+   EKKW E ++WED+ATQ 
Sbjct: 817 YWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQY 876

Query: 557 AFSSRCR 563
            F   CR
Sbjct: 877 RFLPTCR 883

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  222 bits (565), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 252/491 (51%), Gaps = 58/491 (11%)

Query: 104 LCSKNFVSNSEIPKRQLIDYWISEGFVCDFD----DGCDFIDDLLQACLLEE-EGDDHVK 158
           L S  F  + EI K  LI+YW+ +G +         G   I  L +A LL+E E  + VK
Sbjct: 403 LFSALFPEDYEIGKDDLIEYWVGQGIILGSKGINYKGYTIIGTLTRAYLLKESETKEKVK 462

Query: 159 MHDMIREMSLWIA--CTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE 216
           MHD++REM+LWI+  C   K++   +V A  +L + PK E+ +  +R+SL+ N I    E
Sbjct: 463 MHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEACE 522

Query: 217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS------------- 263
              CP+L TLLL  NR+ +I+  F   +  L VL L +N +L +LPS             
Sbjct: 523 SLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELPSFSPLYSLRFLNLS 582

Query: 264 --GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEG 321
             GI  LP  L AL  L YLNL++T  L  I    I     LEVL+L+  G  +      
Sbjct: 583 CTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLYASGIDI------ 634

Query: 322 NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS-- 379
                  + L++++   KHL +L+ T R+S G++ FL   +  S T+ + +    +    
Sbjct: 635 ------TDKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSL 688

Query: 380 --PPFNVLHLAYME----NLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC 433
             P   +    ++E    ++ K E+E  +  E +I      + +    F +L  V +  C
Sbjct: 689 KVPLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDI---SFINLRKVRLDNC 745

Query: 434 RKAKDLTWLVFVQNLKVLRIGDCYDMEEIIS------VDKLRDISVIIGSEHNFFAQLEY 487
              KDLTWLVF  +L  L +    D+E IIS      + K  +++ +I      F +LE+
Sbjct: 746 TGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP-----FRELEF 800

Query: 488 LSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEEL 547
           L++     LKS+Y +PL F KLK+I++  CP+L KLPL+S SA ++ VVI  E++W + L
Sbjct: 801 LTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGL 860

Query: 548 QWEDQATQNAF 558
           QWED AT+  F
Sbjct: 861 QWEDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 179/487 (36%), Positives = 248/487 (50%), Gaps = 63/487 (12%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCD-------FDDGCDFIDDLLQACLLEEEG--DDHVKM 159
           F  +  + K +LIDYWI EGF+ +          G + I  L++ACLL EE    + VKM
Sbjct: 417 FPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKM 476

Query: 160 HDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPT 219
           HD++REM+LWIA  + + ++  +V  GV L E PK + W   +R+SLM N I  LS  P 
Sbjct: 477 HDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPE 536

Query: 220 CPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSG-------------- 264
           C  L TL L  N  +  I+D FF+ +  L VL L  N SLRKLP+               
Sbjct: 537 CLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSW 596

Query: 265 --IRGLPQELKALEKLRYLNLDYT-RFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEG 321
             I+ LP  L+ L+KLRYL LDY  R  SI     IS   KL++L            +  
Sbjct: 597 TYIKRLPVGLQELKKLRYLRLDYMKRLKSISGISNISSLRKLQLL------------QSK 644

Query: 322 NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP 381
             L       ++ L   + LN+   + +SSL V+  L  P+LV   Q +LV  GV     
Sbjct: 645 MSLDMSLVEELQLLEHLEVLNI---SIKSSLVVEKLLNAPRLVKCLQ-ILVLRGVQEESS 700

Query: 382 FNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRS--------LNTVSVHYC 433
             VL L  M+NL K  +  C + E+KI    E K L  S  RS        L+TV +  C
Sbjct: 701 -GVLTLPDMDNLNKVIIRKCGMCEIKI----ERKTLSLSSNRSPKTQFLHNLSTVHISSC 755

Query: 434 RKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG 493
              KDLTWL+F  NL  L + D   +E II+ +K   +S II      F +LE L +   
Sbjct: 756 DGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKAMTMSGIIP-----FQKLESLRLHNL 810

Query: 494 TNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSA--KERRVVIEGEKKWWEELQWED 551
             L+S+Y  PL FP LK I +  CP+L+KLPL+S  A   E  V+   E++W E ++W++
Sbjct: 811 AMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDN 870

Query: 552 QATQNAF 558
           +AT+  F
Sbjct: 871 EATRLRF 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 247/485 (50%), Gaps = 63/485 (12%)

Query: 109 FVSNSEIPKRQLIDYWI-------SEGFVCDFDDGCDFIDDLLQACLLEEE----GDDHV 157
           F  +++I K  LI+YWI       SEG     + G + I  L++A LL EE    G + V
Sbjct: 414 FPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIV 473

Query: 158 KMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEI 217
            +HD++REM+LWIA  + K+ + F+V A V L E  K E W   +R+SLM N I  L   
Sbjct: 474 CLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGR 533

Query: 218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP--------------- 262
             C  L TLLL    +E+I+  FF SM  L VL L  N  L +LP               
Sbjct: 534 LDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLS 593

Query: 263 -SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF-WVVTEEE 320
            +GIR LP+ L+ L+KL +L L+ T  L  +    IS    L+VL+L G  + W +    
Sbjct: 594 STGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAWDLDT-- 649

Query: 321 GNVLCEDAEPLMKELLGSKHLNVLSWTFRS-SLGVQNFLKYPKLVSITQSVLVKSGVHTS 379
                      +KEL   +HL VL+ T    +LG   FL   +L+S  + + + +  + +
Sbjct: 650 -----------VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRN 698

Query: 380 PPFNVLHL-AYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD 438
              + + L   M+ LQ+F +E C+  E+K+             F SL  V++  CR+ ++
Sbjct: 699 RNSSRISLPVTMDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIEVNLSNCRRLRE 750

Query: 439 LTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNF--FAQLEYLSISWGTNL 496
           LT+L+F  NLK L +     +E+II+ +K  D     G +     F +L  L +     L
Sbjct: 751 LTFLMFAPNLKRLHVVSSNQLEDIINKEKAHD-----GEKSGIVPFPKLNELHLYNLREL 805

Query: 497 KSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERR---VVIEGEKKWWEELQWEDQA 553
           K++Y +PLPFP L+KI+V  CP LKKLPL+S S K      ++   E +W   ++WED+A
Sbjct: 806 KNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEA 865

Query: 554 TQNAF 558
           T+  F
Sbjct: 866 TKTRF 870

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  206 bits (523), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 249/493 (50%), Gaps = 69/493 (13%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCDFDD--------GCDFIDDLLQACLLEEEGD----DH 156
           F  +  I K +LIDYWI EGF+ D D+        G + +  L+ A LL E G      +
Sbjct: 417 FPEDDLIEKERLIDYWICEGFI-DGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSY 475

Query: 157 VKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE 216
           VKMHD++REM+LWIA  + K + N +V AG  L E PK ++W+   R+SL+ N I+ +  
Sbjct: 476 VKMHDVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHG 535

Query: 217 IPTCPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275
            P CP+L TL L  NR +  I+  FF+SM  L VL L  N++L        GLP ++  L
Sbjct: 536 SPECPKLTTLFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNL-------SGLPDQISEL 588

Query: 276 EKLRYLNLDYTRFL------------------SIIPHQLISG---FSKLEVLRLFGCGFW 314
             LRYL+L Y+                     S++  + +SG    S L+ +RL     W
Sbjct: 589 VSLRYLDLSYSSIGRLPVGLLKLKKLMHLNLESMLCLESVSGIDHLSNLKTVRLLNLRMW 648

Query: 315 VVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKS 374
           +                ++EL   ++L VL+    SS  ++  L   +LV   Q V VK 
Sbjct: 649 LTISL------------LEELERLENLEVLTIEIISSSALEQLLCSHRLVRCLQKVSVKY 696

Query: 375 GVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR 434
               S    +L L  + +L++  +  C + ++ I   E    L    F +L+ V +  C 
Sbjct: 697 LDEES--VRILTLPSIGDLREVFIGGCGMRDIII---ERNTSLTSPCFPNLSKVLITGCN 751

Query: 435 KAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT 494
             KDLTWL+F  NL  L + +   +EEIIS +K     ++       F +LEYL +    
Sbjct: 752 GLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEKASTADIVP------FRKLEYLHLWDLP 805

Query: 495 NLKSVYPNPLPFPKLKKIDVCH-CPQLKKLPLNSSS---AKERRVVIEGEKKWWEELQWE 550
            LKS+Y NPLPFP L +I+V + C +L KLPL+S S   A E  V+  G+++W E ++WE
Sbjct: 806 ELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWE 865

Query: 551 DQATQNAFSSRCR 563
           D+AT+  F   C+
Sbjct: 866 DKATRLRFLPSCK 878

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 243/481 (50%), Gaps = 45/481 (9%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCD-------FDDGCDFIDDLLQACLLEEEGDD--HVKM 159
           +  +  I K +LIDYWI EGF+          + G + +  L++ACLL EEG +   VKM
Sbjct: 415 YPEDYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKM 474

Query: 160 HDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPT 219
           HD++REM+LW    + K ++  +V AG  L + PK E+W   +R+SLM NGI  +S  P 
Sbjct: 475 HDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPE 534

Query: 220 CPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRINISLRKLP---------------- 262
           CP L TL L  N+ +  I+  FF+ M  L VL L  N  L  LP                
Sbjct: 535 CPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSH 594

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
           + I GLP  L+ L+ L +LNL+  R L       I+G SKL  LR  G           N
Sbjct: 595 TNIEGLPACLQDLKTLIHLNLECMRRLGS-----IAGISKLSSLRTLGL-------RNSN 642

Query: 323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPF 382
           ++ +     +KEL   +HL +L+    S++ ++  +    L++  Q V ++  ++     
Sbjct: 643 IMLDVMS--VKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQD 700

Query: 383 NVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWL 442
             L L  M++L+   + +C + E++I+            F +L+ V +H C   KDLTWL
Sbjct: 701 TKLRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWL 760

Query: 443 VFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSE-HNF--FAQLEYLSISWGTNLKSV 499
           +F  N+  L I     ++E+IS  K   ++     + H    F +L+ L +S    LKS+
Sbjct: 761 LFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSI 820

Query: 500 YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAK--ERRVVIEGEKKWWEELQWEDQATQNA 557
           Y   L FP L  I V  CP+L+KLPL+S +    ++ V+   E +W E ++W+D+AT+  
Sbjct: 821 YWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLH 880

Query: 558 F 558
           F
Sbjct: 881 F 881

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  203 bits (517), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 157/497 (31%), Positives = 251/497 (50%), Gaps = 73/497 (14%)

Query: 109 FVSNSEIPKRQLIDYWI-------SEGFVCDFDDGCDFIDDLLQACLLEE----EGDDHV 157
           +  +++I K  LI++WI       SEG     D G D I  L++A LL E    +G   V
Sbjct: 414 YPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSV 473

Query: 158 KMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEI 217
            MHD++REM+LWIA  +  +++ F+V AGV + E PK + W   +R+SLMGN I  L   
Sbjct: 474 IMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGS 533

Query: 218 PTCPRLVTLLLGG---------NRIEEITDGFFQSMSTLRVLSLRINISLRKLP------ 262
             C  L TLLLG          + I+ I+  FF  M  L VL L  N SL +LP      
Sbjct: 534 YECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNL 593

Query: 263 ----------SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312
                     +GIR L + ++ L+K+ +LNL++T  L  I    IS    L+VL+L+G  
Sbjct: 594 VSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSLHNLKVLKLYGSR 651

Query: 313 F-WVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVL 371
             W +               +KEL   +HL +L+ T       + FL   +L+S ++ + 
Sbjct: 652 LPWDLNT-------------VKELETLEHLEILTTTIDPR--AKQFLSSHRLMSRSRLLQ 696

Query: 372 VKSGVHTSPPFNVLHLAY-MENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSV 430
           +      SP   +  L+   + L++FE+  C++ E+K+             F SL  V++
Sbjct: 697 IFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGI--------CNFLSLVDVTI 748

Query: 431 HYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNF--FAQLEYL 488
           + C   ++LT+L+F   L+ L + D  D+E+II+ +K  +     G +     F +L+YL
Sbjct: 749 YNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACE-----GEDSGIVPFPELKYL 803

Query: 489 SISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERR---VVIEGEKKWWE 545
           ++     LK++Y  PLPF  L+KI +  CP L+KLPL+S S K+     ++   + +W +
Sbjct: 804 NLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLK 863

Query: 546 ELQWEDQATQNAFSSRC 562
            ++W D+AT+  F   C
Sbjct: 864 GVKWADEATKKRFLPSC 880

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 158/499 (31%), Positives = 255/499 (51%), Gaps = 63/499 (12%)

Query: 91  DRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFD------DGCDFIDDLL 144
           + + E+ RLC   L    F  N +I K  L++YWI EG +   D       G + I DL+
Sbjct: 390 NMSDEIIRLCF--LYCALFPENLDIGKEDLVNYWICEGILAKEDREEAEIQGYEIICDLV 447

Query: 145 QACLLEEEGDDH-VKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKR 203
           +  LL E G+ + VKMH M+REM+LWIA       ++F+V  G  + +     +W   +R
Sbjct: 448 RMRLLMESGNGNCVKMHGMVREMALWIA------SEHFVVVGGERIHQMLNVNDWRMIRR 501

Query: 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRINISLRKLP 262
           +S+    I+++S+ P C  L TL+   NR ++ I+  FFQ M+ L VL L  N  L +LP
Sbjct: 502 MSVTSTQIQNISDSPQCSELTTLVFRRNRHLKWISGAFFQWMTGLVVLDLSFNRELAELP 561

Query: 263 ----------------SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
                           + I+GLP  LK L+ L +L+LDYT  L  +   +I+    L+VL
Sbjct: 562 EEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTSNLQEV--DVIASLLNLQVL 619

Query: 307 RLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVS- 365
           RLF            + +  D + LM+++   K L  LS T R S  +Q  L   +L S 
Sbjct: 620 RLF------------HSVSMDLK-LMEDIQLLKSLKELSLTVRGSSVLQRLLSIQRLASS 666

Query: 366 -----ITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQS 420
                +T++ +V  G+        L L  + +L + ++  CN+ E+ ID    +++    
Sbjct: 667 IRRLHLTETTIVDGGI--------LSLNAIFSLCELDILGCNILEITIDWRCTIQREIIP 718

Query: 421 GFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHN 480
            F+++ T+++H C   +DLTWL+    L  L + +C  MEE+IS DK   ++ +  +   
Sbjct: 719 QFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDK--AMAKLGNTSEQ 776

Query: 481 FFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE 540
            F  L  L +     L+S+Y  PLPFP L+ + +  CP+L++LP NS S    +V    E
Sbjct: 777 PFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVETIIE 836

Query: 541 KKWWEELQWEDQATQNAFS 559
           ++  + ++WED+AT+  FS
Sbjct: 837 EQVIKIVEWEDEATKQRFS 855

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
24461865	892	NBS-LRR type disease resistance protein	0.773	0.491	0.472	5e-99
24461866	890	NBS-LRR type disease resistance protein	0.773	0.492	0.450	3e-98
24461864	899	NBS-LRR type disease resistance protein	0.795	0.500	0.443	5e-92
24461861	890	NBS-LRR type disease resistance protein	0.761	0.484	0.452	5e-90
24461863	889	NBS-LRR type disease resistance protein	0.780	0.497	0.439	2e-85
225443158	903	PREDICTED: probable disease resistance p	0.828	0.519	0.406	7e-84
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.756	0.521	0.414	1e-83
359482672	905	PREDICTED: probable disease resistance p	0.810	0.507	0.406	9e-79
255553103	910	Disease resistance protein RPS5, putativ	0.780	0.485	0.395	1e-77
225442867	893	PREDICTED: probable disease resistance p	0.768	0.487	0.399	2e-77

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 221/468 (47%), Positives = 299/468 (63%), Gaps = 30/468 (6%)

Query: 115 IPKRQLIDYWISEGFVCDFD------DGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSL 168
           I K +LID WI E  + + D      +G   +  LL ACLLEE GD  VKMHD+IR+M+L
Sbjct: 424 ISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEGGDGEVKMHDVIRDMAL 483

Query: 169 WIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLL 228
           WIAC +++E++NF V+AGV L EAP    WE A+R+SLM N IR+LSEIPTCP L+TLLL
Sbjct: 484 WIACDIEREKENFFVYAGVGLVEAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLLL 543

Query: 229 GGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL----------------PQEL 272
             N + +I + FFQ M +L+VL+L  +  L KLP GI  L                P EL
Sbjct: 544 NENNLRKIQNYFFQFMPSLKVLNLS-HCELTKLPVGISELVSLQHLDLSESDIEEFPGEL 602

Query: 273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTE-EEGNVLCEDAEPL 331
           KAL  L+ L+L+YTR L  IP QLIS  S+L VLR+FG       E  E ++L    E +
Sbjct: 603 KALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASHNAFDEASENSILFGGGELI 662

Query: 332 MKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYME 391
           ++ELLG KHL V++ T RSS G+Q+FL   KL S TQ++L++     S    V  LA ++
Sbjct: 663 VEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQH-FKDSTSLEVSALADLK 721

Query: 392 NLQKFEL-ESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKV 450
            L + ++  S  LEE+K+D  EEV+   Q  FRSLN V +  C + KDLT+LVF  NLK 
Sbjct: 722 QLNRLQIANSVILEELKMDYAEEVQ---QFAFRSLNMVEICNCIQLKDLTFLVFAPNLKS 778

Query: 451 LRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLK 510
           +++G C+ MEEI S  K  ++  ++ +  N F +L+ L ++   NLKS+Y   LPFP LK
Sbjct: 779 IKVGICHAMEEIASEGKFAEVPEVMAN-LNPFEKLQNLEVAGARNLKSIYWKSLPFPHLK 837

Query: 511 KIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAF 558
            +   HC +LKKLPL+S+SAKER++VI GE+ W E+LQWED+AT+NAF
Sbjct: 838 AMSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAF 885

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 211/468 (45%), Positives = 293/468 (62%), Gaps = 30/468 (6%)

Query: 115 IPKRQLIDYWISEGFVCDFD------DGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSL 168
           I K  LID WI EGF+ + D       G   +  LL ACLLEE GD  VKMHD++R+M+L
Sbjct: 423 ISKEILIDCWIGEGFLTERDRFGEQNQGYHILGILLHACLLEEGGDGEVKMHDVVRDMAL 482

Query: 169 WIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLL 228
           WIAC ++KE+ NFLV+AGV L EAP    WE A+R+SLM N I +LSE+ TCP L+TL L
Sbjct: 483 WIACAIEKEKDNFLVYAGVGLIEAPDVSGWEKARRLSLMHNQITNLSEVATCPHLLTLFL 542

Query: 229 GGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG----------------LPQEL 272
             N ++ I + FF+ M +L+VL+L  + SL  LP GI                  LP EL
Sbjct: 543 NENELQMIHNDFFRFMPSLKVLNLA-DSSLTNLPEGISKLVSLQHLDLSKSSIEELPLEL 601

Query: 273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTE-EEGNVLCEDAEPL 331
           KAL  L+ LNL+YT  L+ IP QLIS  S+L VLR+F           E ++L    E +
Sbjct: 602 KALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGGELI 661

Query: 332 MKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYME 391
           ++ELLG K+L V+S+T RSS G+Q+FL   KL S T+++L++   + S    V  LA ++
Sbjct: 662 VEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRALLLQC-FNDSTSLEVSALADLK 720

Query: 392 NLQKFELESC-NLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKV 450
            L +  +  C  LEE+K+D T EV++     F SL  V +  C K KDLT+LVF  NL+ 
Sbjct: 721 QLNRLWITECKKLEELKMDYTREVQQFV---FHSLKKVEILACSKLKDLTFLVFAPNLES 777

Query: 451 LRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLK 510
           + +  C  MEE++S+ K  ++  ++ +  N FA+L+ L +   TNLKS+Y  PLPFP LK
Sbjct: 778 IELMGCPAMEEMVSMGKFAEVPEVVAN-LNPFAKLQNLKLFGATNLKSIYWKPLPFPHLK 836

Query: 511 KIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAF 558
            +   HC +LKKLPL+S+SA+ER +VI G ++WWE+L+W D+AT+NAF
Sbjct: 837 SMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAF 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 218/492 (44%), Positives = 286/492 (58%), Gaps = 42/492 (8%)

Query: 98  RLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDF------DDGCDFIDDLLQACLLEE 151
           R CL   C   F  +  I K  LID WI EGF+         D G   + +++ ACLLEE
Sbjct: 411 RSCLLYCCL--FPEDYRIYKENLIDCWIGEGFLKVTGKYELQDRGHTILGNIVHACLLEE 468

Query: 152 EGDDHVKMHDMIREMSLWIACTVDKEE------QNFLVHAGVELTEAPKFEEWEGAKRVS 205
           EGDD VKMHD+IR+M+LWIAC  +K E      +N+LV+ G  LTEAP   EWE AKR+S
Sbjct: 469 EGDDVVKMHDVIRDMTLWIACDTEKTEDTEKKKENYLVYEGAGLTEAPNVREWENAKRLS 528

Query: 206 LMGNGIRSLSEIPTCPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           LM   IR+LSE+PTC  L+TL L  N  +E IT  FF+SM  L+VL+L     +   P G
Sbjct: 529 LMETQIRNLSEVPTCLHLLTLFLVFNEELEMITGDFFKSMPCLKVLNLSGARRMSSFPLG 588

Query: 265 ----------------IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                           I+ LP+EL ALE L+ LNLD T +L  IP QLIS FS L VLR+
Sbjct: 589 VSVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRM 648

Query: 309 FGCGFWVVTEEEGNV-LCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSIT 367
           FG G W    +  +  L    + L++ L G KHL VLS T  +S  +Q  L   KL S T
Sbjct: 649 FGVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCT 708

Query: 368 QSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLN 426
           Q++ + S    S P +V  LA +E+L +  +  C  LEE+K+     V       F+SL 
Sbjct: 709 QALYLHS-FKRSEPLDVSALAGLEHLNRLWIHECEELEELKMARQPFV-------FQSLE 760

Query: 427 TVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLE 486
            + ++ C + K+LT+L+F  NLK + +  C+ MEEIIS  K  D   ++     F AQL 
Sbjct: 761 KIQIYGCHRLKNLTFLLFAPNLKSIEVSSCFAMEEIISEVKFADFPEVMPIIKPF-AQLY 819

Query: 487 YLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEE 546
            L +   T LKS+Y  PLPFP L+ + V  C +L+KLPL+S+SAKER++VI G  KWWE+
Sbjct: 820 SLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQ 879

Query: 547 LQWEDQATQNAF 558
           LQWEDQ TQNAF
Sbjct: 880 LQWEDQDTQNAF 891

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 283/475 (59%), Gaps = 44/475 (9%)

Query: 115 IPKRQLIDYWISEGFV------CDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSL 168
           I K  L+D WI EG +         + G   +  L+ +CLLEE  +D VKMHD+IR+M+L
Sbjct: 425 ISKENLVDCWIGEGLLNGSVTLGSHEQGYHVVGILVHSCLLEEVDEDEVKMHDVIRDMAL 484

Query: 169 WIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLL 228
           W+AC  +KE++N+LV+AG  L EAP   EWE  +R+SLM N I +LSE+PTCP L+TL L
Sbjct: 485 WLACDAEKEKENYLVYAGAGLREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFL 544

Query: 229 GGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL----------------PQE 271
             + I   I   F QSM  L+VL+L   + L  LP GI  L                P+E
Sbjct: 545 NSDDILWRINSDFLQSMLRLKVLNLSRYMGLLVLPLGISKLVSLEYLDLSTSLISEIPEE 604

Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN-----VLCE 326
           LKAL  L+ LNL+YT  L  IP QLIS FS+L VLR+FG  ++      GN     VL  
Sbjct: 605 LKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYF----SYGNYPIESVLFG 660

Query: 327 DAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLH 386
             E L++ELLG KHL VLS T  SS  +Q+FL    L S T+++L++     S   +V  
Sbjct: 661 GGELLVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQD-FQGSTSVDVSG 719

Query: 387 LAYMENLQKFELESC-NLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFV 445
           LA ++ L++  +  C  L E+KID   EV++    GF SL +  V+YC K KDLT LV +
Sbjct: 720 LADLKRLKRLRISDCYELVELKIDYAGEVQRY---GFHSLQSFEVNYCSKLKDLTLLVLI 776

Query: 446 QNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLP 505
            NLK + + DC  MEEIISV +            N FA+L+YL I    NLKS+Y  PLP
Sbjct: 777 PNLKSIEVTDCEAMEEIISVGEF-------AGNPNAFAKLQYLGIGNLPNLKSIYWKPLP 829

Query: 506 FPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSS 560
           FP L+++ V  C +LKKLPL+S+SAKE ++VI G   WW  LQWED+ATQNAF S
Sbjct: 830 FPCLEELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLS 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 208/473 (43%), Positives = 280/473 (59%), Gaps = 31/473 (6%)

Query: 115 IPKRQLIDYWISEGFVCDF------DDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSL 168
           I K  LID WI EGF+ +       + G   +  L+ ACLLEE  DD VKMHD++R M+L
Sbjct: 415 ILKWDLIDCWIGEGFLEESARFVAENQGYCIVGTLVDACLLEEIEDDKVKMHDVVRYMAL 474

Query: 169 WIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLL 228
           WI C +++E++NFLV AG  L +AP  +EWE  +R+SLM N I+ LSE+PTCP L TL L
Sbjct: 475 WIVCEIEEEKRNFLVRAGAGLEQAPAVKEWENVRRLSLMQNDIKILSEVPTCPDLHTLFL 534

Query: 229 GG-NRIEEITDGFFQSMSTLRVLSLRI--NISLRKLPSG----------------IRGLP 269
              N ++ ITDGFF+ M +L+VL +    ++ + KLP G                I  LP
Sbjct: 535 ASNNNLQRITDGFFKFMPSLKVLKMSHCGDLKVLKLPLGMSMLGSLELLDISQTSIGELP 594

Query: 270 QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAE 329
           +ELK L  L+ LNL +  +LS IP QLIS  S+L VLR+F  G       E +VL    E
Sbjct: 595 EELKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATGCSHSEASEDSVLFGGGE 654

Query: 330 PLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAY 389
            L++ELLG K+L VL  T RSS  +Q F    KL S  +S+L+     T    +    A 
Sbjct: 655 VLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAFAD 714

Query: 390 MENLQKFELES-CNLEEMKIDSTEEVKKLFQSG-FRSLNTVSVHYCRKAKDLTWLVFVQN 447
           + +L +  ++S   +EE+KID TE V+K  +   F SL+ V++  C K KDLT+LVF  N
Sbjct: 715 LNHLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAPN 774

Query: 448 LKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFP 507
           LK L++ +C  MEEIISV K  ++  ++G   + F  L+ L +     LKS+Y  PLPF 
Sbjct: 775 LKSLQLLNCRAMEEIISVGKFAEVPEVMG-HISPFENLQRLHLFDLPRLKSIYWKPLPFT 833

Query: 508 KLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSS 560
            LK++ V  C QLKKLPL+S+SAK    VI GE + W  LQWED ATQ AF S
Sbjct: 834 HLKEMRVHGCNQLKKLPLDSNSAK---FVIRGEAEGWNRLQWEDDATQIAFRS 883

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 302/526 (57%), Gaps = 57/526 (10%)

Query: 81  LETEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDD----- 135
           L+  Y  L  D A    R C   L    +  +++I K  LID WI EGF+ +FDD     
Sbjct: 394 LKFSYDNLPSDTA----RSCF--LYCSLYPEDNDIFKEDLIDCWICEGFLDEFDDRDGAR 447

Query: 136 --GCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAP 193
             G D I  L++ACLLEE  +  VKMHD+IR+M+LWIAC   + +  FLV AG  LTE P
Sbjct: 448 NQGFDIIGSLIRACLLEESREYFVKMHDVIRDMALWIACECGRVKDKFLVQAGAGLTELP 507

Query: 194 KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSL- 252
           +  +W+G +R+SLM N I  L+++PTCP L+TL L  N +E ITDGFFQ M  L+VL+L 
Sbjct: 508 EIGKWKGVERMSLMSNHIEKLTQVPTCPNLLTLFLNNNSLEVITDGFFQLMPRLQVLNLS 567

Query: 253 --RIN---------ISLRKLP---SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS 298
             R++         +SLR L    + I  LP E K L  L+YLNLDYT+ L IIP  ++S
Sbjct: 568 WSRVSELPTEIFRLVSLRYLDLSWTCISHLPNEFKNLVNLKYLNLDYTQQLGIIPRHVVS 627

Query: 299 GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL 358
             S+L+VL++F CGF+ V E+  NVL +  E L+ EL    +L  L+ T RS+  +Q  L
Sbjct: 628 SMSRLQVLKMFHCGFYGVGED--NVLSDGNEALVNELECLNNLCDLNITIRSASALQRCL 685

Query: 359 KYPKLVSITQSVLVK--SGVHTSPPFNVLHLAYMENLQKFEL----ESCNLEEMKIDSTE 412
              K+   TQ + ++  +G+      N L ++++EN+++ +     +   L ++ I+ T+
Sbjct: 686 CSEKIEGCTQDLFLQFFNGL------NSLDISFLENMKRLDTLHISDCATLADLNINGTD 739

Query: 413 EVKKLFQS-------------GFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDM 459
           E +++  S              F SL +V +  C   KDLTWLVF  NL  L I  C ++
Sbjct: 740 EGQEILTSDNYLDNSKITSLKNFHSLRSVRIERCLMLKDLTWLVFAPNLVNLWIVFCRNI 799

Query: 460 EEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQ 519
           E++I   K   +    G   + FA+LE L +     LKS+Y N L FP LK++ V  CP+
Sbjct: 800 EQVIDSGKW--VEAAEGRNMSPFAKLEDLILIDLPKLKSIYRNTLAFPCLKEVRVHCCPK 857

Query: 520 LKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAFSSRCRTW 565
           LKKLPLNS+SAK R +VI GEK W  EL+WED+A  NAF    R+W
Sbjct: 858 LKKLPLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHNAFLPCFRSW 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 272/470 (57%), Gaps = 42/470 (8%)

Query: 115 IPKRQLIDYWISEGFVCDFDD-------GCDFIDDLLQACLLEEEGDDHVKMHDMIREMS 167
           I K  LIDYWI EGF+  + D       G + ID L QACLLE+EG D VKMH +IR+M+
Sbjct: 358 INKSYLIDYWIGEGFLGAYSDAYEARTEGHNIIDILTQACLLEDEGRD-VKMHQVIRDMA 416

Query: 168 LWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLL 227
           LW+     KE   +LV AG +L +AP+  +WE  +RVSLM N I++LS+ P C  LVTL 
Sbjct: 417 LWMDSR--KENPVYLVEAGTQLADAPEVGKWEVVRRVSLMANNIQNLSKAPRCNDLVTLF 474

Query: 228 LGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI----------------RGLPQE 271
           L  N ++ I+D FFQ M +L+VL L  N  + + PSGI                R LP +
Sbjct: 475 LKKNNLKMISDTFFQFMLSLKVLDLSENREITEFPSGILKLVSLQYLNLSRTGIRQLPVQ 534

Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPL 331
           LK L KL+ LNL++T  L  IP Q+IS FS L VLR+F C        +G V       L
Sbjct: 535 LKNLVKLKCLNLEHTYELRTIPMQVISNFSSLTVLRMFHCASSDSVVGDG-VQTGGPGSL 593

Query: 332 MKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYME 391
            ++L   +HLN+L+ T RS   +Q F  + K ++ TQ++ ++   H +   ++  L  M 
Sbjct: 594 ARDLQCLEHLNLLTITIRSQYSLQTFASFNKFLTATQALSLQK-FHHARSLDISLLEGMN 652

Query: 392 NLQKFELESC-NLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKV 450
           +L   EL  C NL+++ I+++   +   ++ F SL  VS+  C K +DL WL    N+K 
Sbjct: 653 SLDDLELIDCSNLKDLSINNSSITR---ETSFNSLRRVSIVNCTKLEDLAWLTLAPNIKF 709

Query: 451 LRIGDCYDMEEIISVDK--LRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPK 508
           L I  C  MEEII  +K   R++ V        F +LE+L +     LK +YP+ LPFP 
Sbjct: 710 LTISRCSKMEEIIRQEKSGQRNLKV--------FEELEFLRLVSLPKLKVIYPDALPFPS 761

Query: 509 LKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAF 558
           LK+I V  CP L+KLPLNS+SAKE R+VI+G + WW  L+WED+A Q+ F
Sbjct: 762 LKEIFVDDCPNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTF 811

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 203/500 (40%), Positives = 276/500 (55%), Gaps = 41/500 (8%)

Query: 95  EMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEGFVCDFDD-------GCDFIDDLLQAC 147
           E+ R C   L    +  + ++PK  LI+ WI EGF+ +FDD       G + I  L+ AC
Sbjct: 402 EVSRSCF--LYCSLYPEDYQMPKLSLINRWICEGFLDEFDDMEGAKNQGYNIIGTLIHAC 459

Query: 148 LLEEEGDDH-VKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSL 206
           LLEE   D+ VK+HD+IR+M+LWI C   KE+  FLV AG  LTEAP+  EW G KR+SL
Sbjct: 460 LLEEGDVDYKVKLHDVIRDMALWIGCETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISL 519

Query: 207 MGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG-- 264
           M N I  L+  P CP L TL L  N ++ I+D FFQ M +LRVL L  N S+ +LP G  
Sbjct: 520 MDNQIEELTGSPKCPNLSTLFLADNSLKMISDTFFQFMPSLRVLDLSKN-SITELPRGIS 578

Query: 265 --------------IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                         I+ LP ELK L+KL+ L L     LS IP QLIS  S L+V+ +F 
Sbjct: 579 NLVSLQYLNLSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFN 638

Query: 311 CGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSV 370
            G    T  +  +L +D E L++EL   K+L+ L  + +S+   +  L   KL  I  S 
Sbjct: 639 SGISERTVLKDGILSDDNEALVQELESLKYLHGLGVSVKSASAFKRLLSSYKL-RICISG 697

Query: 371 LVKSGVHTSPPFNVLHLAYMENLQKFELESC-NLEEMKIDSTEEVKKLFQS--------- 420
           L     + S   N+  L+  + L    +  C +LE+++ID   E K+  +S         
Sbjct: 698 LCLKNFNGSSSLNLTSLSNAKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSS 757

Query: 421 --GFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSE 478
              F SL  + +  C + KDLTWLVFV NLKVL I DC  M+E+I   K  + S   G  
Sbjct: 758 HNSFHSLVWLGIERCSRLKDLTWLVFVPNLKVLTIIDCDQMQEVIGTGKCGE-SAENGEN 816

Query: 479 HNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIE 538
            + F +L+ L +     LKS++   LPF  L  I V +CP LKKLPL+++SAK  R+VI 
Sbjct: 817 LSPFVKLQVLELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIA 876

Query: 539 GEKKWWEELQWEDQATQNAF 558
           G  KWW E++WED+ATQN F
Sbjct: 877 GHNKWWNEVEWEDEATQNVF 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553103|ref|XP_002517594.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543226|gb|EEF44758.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 190/481 (39%), Positives = 272/481 (56%), Gaps = 39/481 (8%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCDFDDGCDFIDD-------LLQACLLEEEGDDHVKMHD 161
           F  N +I K  LI YW+ E F  ++D+G    D        L++ACLLE+EGD +VKMHD
Sbjct: 418 FPRNFKIFKSDLIAYWMCEEFWDEYDNGSSANDKGHHIMGVLVRACLLEDEGD-YVKMHD 476

Query: 162 MIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCP 221
           +IR+M L IAC   + ++  LV AG  L EAP+  +WE  KR+SLM N IR L+E+PTCP
Sbjct: 477 VIRDMGLRIACNCARTKETNLVQAGALLIEAPEARKWEHIKRMSLMENSIRVLTEVPTCP 536

Query: 222 RLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG------------- 267
            L TL L  N  +  I   FF+SM  L VL L     +++LPSGI               
Sbjct: 537 ELFTLFLCHNPNLVMIRGDFFRSMKALTVLDLS-KTGIQELPSGISDMVSLQYLNISYTV 595

Query: 268 ---LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVL 324
              LP  L  LEKL+YLNL++   L +IP QL+   S+L+ LR+ GCG     + + N+L
Sbjct: 596 INQLPAGLMRLEKLKYLNLEHNENLYMIPKQLVRSLSRLQALRMLGCGPVHYPQAKDNLL 655

Query: 325 CEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNV 384
            +     +KEL   ++LN LS T R +  +Q+F    KL S  +++ +++   +S   N+
Sbjct: 656 SDGV--CVKELQCLENLNRLSITVRCASALQSFFSTHKLRSCVEAISLEN-FSSSVSLNI 712

Query: 385 LHLAYMENL----QKFELES--CNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD 438
             LA M++L        + S     E   + +      L    F +L  V V  C + +D
Sbjct: 713 SWLANMQHLLTCPNSLNINSNMARTERQAVGNLHNSTILRTRCFNNLQEVRVRKCFQLRD 772

Query: 439 LTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS 498
           LTWL+ V NL VL +  C ++EEIISV++L      +G   N FA+L+ L +     +K 
Sbjct: 773 LTWLILVPNLTVLEVTMCRNLEEIISVEQLG----FVGKILNPFARLQVLELHDLPQMKR 828

Query: 499 VYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQATQNAF 558
           +YP+ LPFP LKKI+V +CP LKK+PL S+SAK R+VVIE +  WW  ++WE++ T+ AF
Sbjct: 829 IYPSILPFPFLKKIEVFNCPMLKKVPLGSNSAKGRKVVIEADDHWWNGVEWENRETKAAF 888

Query: 559 S 559
           S
Sbjct: 889 S 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 194/486 (39%), Positives = 268/486 (55%), Gaps = 51/486 (10%)

Query: 109 FVSNSEIPKRQLIDYWISEGFVCDFDD-------GCDFIDDLLQACLLEEEGDDHV-KMH 160
           F  + +IPK  +I  W  EG + +FDD       G + I  L+ ACLLEE   D+V K+H
Sbjct: 414 FPEDYQIPKIAMIKRWFCEGLLDEFDDMKGAENQGYNIIGTLIHACLLEEGDVDYVVKLH 473

Query: 161 DMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTC 220
           D+IR+M+LWIAC   KE+  FLV A   LTEAP+   W G KR+SL+GN I  L+  P C
Sbjct: 474 DVIRDMALWIACETGKEQDKFLVQASSGLTEAPEVARWMGPKRISLIGNQIEKLTGSPNC 533

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG---------------- 264
           P L TL L  N ++ ITD FFQ M  LRVL L  N ++ +LP G                
Sbjct: 534 PNLSTLFLQDNSLKMITDSFFQFMPNLRVLDLSRN-AMTELPQGISNLVSLQYLNLSQTN 592

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVL 324
           I+ LP ELK L KL++L L   R LS IP QLIS  S L+V+ +F CG           +
Sbjct: 593 IKELPIELKNLGKLKFLLLHRMR-LSSIPEQLISSLSMLQVIDMFNCG-----------I 640

Query: 325 CEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNV 384
           C+  E L++EL   K+L+ L  T  S+   +  L   KL S    V +++  + S   N+
Sbjct: 641 CDGDEALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISGVCLEN-FNGSSSLNL 699

Query: 385 LHLAYMENLQKFELESC-NLEEMKIDSTEEVKKLFQ-----------SGFRSLNTVSVHY 432
             L  ++ L+   + +C + E+++ID   E K+  +           S F +L+ + V  
Sbjct: 700 TSLCNVKRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLSWLRVKR 759

Query: 433 CRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISW 492
           C + KDLTWLVF  NLKVL I  C  M+EII   K  + S   G   + F +L+ L++  
Sbjct: 760 CSRLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGE-STENGENLSPFVKLQVLTLED 818

Query: 493 GTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQWEDQ 552
              LKS++   LPF  L  I V  CP LKKLPL+++SAKE R+VI G+ +W+ EL WE++
Sbjct: 819 LPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQTEWFNELDWENE 878

Query: 553 ATQNAF 558
           AT NAF
Sbjct: 879 ATHNAF 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.772	0.488	0.353	3.2e-69
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.780	0.497	0.352	4.3e-69
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.784	0.501	0.344	3.4e-67
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.879	0.560	0.341	1.8e-64
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.761	0.479	0.334	9.2e-64
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.772	0.494	0.342	2.6e-63
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.756	0.479	0.318	5.5e-61
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.782	0.506	0.336	6.9e-61
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.727	0.484	0.327	5.7e-60
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.667	0.390	0.349	2e-57

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 3.2e-69, Sum P(2) = 3.2e-69
 Identities = 170/481 (35%), Positives = 247/481 (51%)

Query:   105 CSKNFVSNSEIPKRQLIDYWI-------SEXXXXXXXXXXXXXXXLLQACLLEEEG--DD 155
             CS  F  +  + K +LIDYWI       +E               L++ACLL EE    +
Sbjct:   414 CSL-FPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKE 472

Query:   156 HVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS 215
              VKMHD++REM+LWIA  + + ++  +V  GV L E PK + W   +R+SLM N I  LS
Sbjct:   473 QVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILS 532

Query:   216 EIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274
               P C  L TL L  N  +  I+D FF+ +  L VL L  N SLRKLP+       ++  
Sbjct:   533 GSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPN-------QISK 585

Query:   275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC-------GFWVVTEEEGNVLCED 327
             L  LRYL+L +T ++  +P  L     KL  LRL          G   ++      L + 
Sbjct:   586 LVSLRYLDLSWT-YIKRLPVGL-QELKKLRYLRLDYMKRLKSISGISNISSLRKLQLLQS 643

Query:   328 AEPL----MKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFN 383
                L    ++EL   +HL VL+ + +SSL V+  L  P+LV   Q +LV  GV       
Sbjct:   644 KMSLDMSLVEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQ-ILVLRGVQEESS-G 701

Query:   384 VLHLAYMENLQKFELESCNLEEMKID----STEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439
             VL L  M+NL K  +  C + E+KI+    S    +        +L+TV +  C   KDL
Sbjct:   702 VLTLPDMDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDL 761

Query:   440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV 499
             TWL+F  NL  L + D   +E II+ +K   +S II      F +LE L +     L+S+
Sbjct:   762 TWLLFAPNLTSLEVLDSELVEGIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSI 816

Query:   500 YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSA-KERRVVIE-GEKKWWEELQWEDQATQNA 557
             Y  PL FP LK I +  CP+L+KLPL+S  A ++  +VI+  E++W E ++W+++AT+  
Sbjct:   817 YWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLR 876

Query:   558 F 558
             F
Sbjct:   877 F 877

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 4.3e-69, Sum P(2) = 4.3e-69
 Identities = 173/491 (35%), Positives = 245/491 (49%)

Query:   105 CSKNFVSNSEIPKRQLIDYWISEXXXXXXXXXXXXXX-------XLLQACLL--EEEGDD 155
             CS  F  +  I K  L+DYWISE                      L++ACLL  EE    
Sbjct:   415 CSL-FPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKS 473

Query:   156 HVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS 215
             +VKMHD++REM+LWI+  + K+++  +V AGV L E PK ++W   +++SLM N I  + 
Sbjct:   474 NVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIF 533

Query:   216 EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL 275
             +   C  L TL L  N + +I+  FF+ M  L VL L  N SL +LP       +E+  L
Sbjct:   534 DSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELP-------EEISEL 586

Query:   276 EKLRYLNLDYTRF---------LSIIPHQLISGFSKL-EVLRLFGCGFWVVTE---EEGN 322
               LRY NL YT           L  + H  +   S L  +L +     W +      +  
Sbjct:   587 ASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGI--SNLWNLRTLGLRDSR 644

Query:   323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPF 382
             +L + +  L+KEL   +HL V++    SSL  +  L   +LV   + V  K     S   
Sbjct:   645 LLLDMS--LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEES--V 700

Query:   383 NVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSG----FRSLNTVSVHYCRKAKD 438
              VL L  M NL+K  ++ C + E+KI+ T       +S     F +L+ V +  C   KD
Sbjct:   701 RVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKD 760

Query:   439 LTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS 498
             LTWL+F  NL  L +G   ++E+IIS +K  + S  I      F +LE L +     LK 
Sbjct:   761 LTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKR 816

Query:   499 VYPNPLPFPKLKKIDVCHCPQLKKLPLNSSS--AKERRVVIEGEKKWWEELQWEDQATQN 556
             +Y   L FP LK I V  C +L+KLPL+S S  A E  V+  GE++W E ++WEDQATQ 
Sbjct:   817 IYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQL 876

Query:   557 AF--SSRCRTW 565
              F  SSR R W
Sbjct:   877 RFLPSSRWR-W 886

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 3.4e-67, Sum P(2) = 3.4e-67
 Identities = 167/485 (34%), Positives = 242/485 (49%)

Query:   105 CSKNFVSNSEIPKRQLIDYWISEXXXXXXXXXXXXXX-------XLLQACLLEEEGDDH- 156
             CS  F  + EI K  LI+YWI E                      L+++ LL E   D  
Sbjct:   414 CSL-FPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKD 472

Query:   157 -VKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS 215
              V MHDM+REM+LWI   + K ++  +V AG+ L E P+ E W   KR+SLM N    + 
Sbjct:   473 VVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKIL 532

Query:   216 EIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274
               P C  L+TL L  N ++ +I+  FF+ M +L VL L  N SL +LP       +E+  
Sbjct:   533 GSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELP-------EEISE 585

Query:   275 LEKLRYLNLDYTRFLSIIPHQLIS----GFSKLE-VLRLFGCGFWVVTEEEGNVLCEDAE 329
             L  L+YL+L  T ++  +PH L         KLE   RL              +   D++
Sbjct:   586 LVSLQYLDLSGT-YIERLPHGLHELRKLVHLKLERTRRLESISGISYLSSLRTLRLRDSK 644

Query:   330 P-----LMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP--- 381
                   LMKEL   +HL +++    S L V     YP++    Q + ++   H   P   
Sbjct:   645 TTLDTGLMKELQLLEHLELITTDISSGL-VGELFCYPRVGRCIQHIYIRD--HWERPEES 701

Query:   382 FNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW 441
               VL L  + NL    + +C + E+ I+ T   K L    F +L+ V +  C   KDLTW
Sbjct:   702 VGVLVLPAIHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTW 761

Query:   442 LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYP 501
             L+F  NL  LR+  C  +E+IIS +K   +   +  E   F +LE L++   + LKS+Y 
Sbjct:   762 LLFAPNLINLRVWGCKHLEDIISKEKAASV---LEKEILPFQKLECLNLYQLSELKSIYW 818

Query:   502 NPLPFPKLKKIDVCH-CPQLKKLPLNSSSA-KERRVVIE-GEKKWWEELQWEDQATQNAF 558
             N LPF +L+ +D+ + CP+L+KLPL+S S  K    VI+  EKKW E ++WED+ATQ  F
Sbjct:   819 NALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQYRF 878

Query:   559 SSRCR 563
                CR
Sbjct:   879 LPTCR 883

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 192/562 (34%), Positives = 298/562 (53%)

Query:    25 AKYVWGLEKNLRVL-ETELHKLTRARADLKTKVEIEEQRPRTRRTNQVAGWLEDVQK-LE 82
             AK   GL   L V+ ET  +K  R   + ++ +++      T    + +G  +++   L+
Sbjct:   343 AKKCRGLPLALNVIGETMAYK--RTVQEWRSAIDV-----LTSSAAEFSGMEDEILPILK 395

Query:    83 TEYTELERDRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEXXXXXXXXXXXXXXX 142
               Y  L+ ++     +LC    C+  F  +  I K  L+DYWI E               
Sbjct:   396 YSYDNLKSEQL----KLCFQ-YCAL-FPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGY 449

Query:   143 -----LLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEE 197
                  L+++CLL EE  + VKMHD++REM+LWIA    K+++NF+V AG++    P+ E+
Sbjct:   450 EIIGILVRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEK 509

Query:   198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
             W+ A+RVSLM N I S+ + P  P+L+TLLL  N +  I+  FF+ M  L VL L +N  
Sbjct:   510 WKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRD 569

Query:   258 LRKLPSGI----------------RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFS 301
             LR LP+ I                R  P  L  L KL YLNL+YTR +  I    ISG +
Sbjct:   570 LRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG--ISGLT 627

Query:   302 KLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYP 361
              L+VLRLF  GF     E+  VL E       +LL  ++L  L+ T   +  ++ FL   
Sbjct:   628 SLKVLRLFVSGF----PEDPCVLNE------LQLL--ENLQTLTITLGLASILEQFLSNQ 675

Query:   362 KLVSITQSVLVKSGVHTSPPFNVLH-LAYMENLQKFELESCNLEEMKIDSTEEVKKLF-- 418
             +L S T+++ +++    +P  +V+  +A M++LQ+      ++ E+K+   E V  L   
Sbjct:   676 RLASCTRALRIEN---LNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIP 732

Query:   419 --QSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIG 476
                + F +L+ VS+ +C + +DLTWL+F  NL VLR+    D++E+I+ +K    ++I  
Sbjct:   733 TTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQNLIP- 791

Query:   477 SEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVV 536
                  F +L+ L +     LK ++  PLPFP L+KI V  C +L+KLPLN +S     +V
Sbjct:   792 -----FQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLV 846

Query:   537 IEGEKKWWEELQWEDQATQNAF 558
             IE  KKW E L+WED+AT+  F
Sbjct:   847 IEAHKKWIEILEWEDEATKARF 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 9.2e-64, Sum P(2) = 9.2e-64
 Identities = 166/496 (33%), Positives = 248/496 (50%)

Query:    98 RLCLGGLCSKNFVSNSEIPKRQLIDYWI-------SEXXXXXXXXXXXXXXXLLQACLLE 150
             ++CL  L    F  +++I K  LI+YWI       SE               L++A LL 
Sbjct:   405 KMCL--LYCALFPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLM 462

Query:   151 EE----GDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSL 206
             EE    G + V +HD++REM+LWIA  + K+ + F+V A V L E  K E W   +R+SL
Sbjct:   463 EEVELDGANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSL 522

Query:   207 MGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI- 265
             M N I  L     C  L TLLL    +E+I+  FF SM  L VL L  N  L +LP+GI 
Sbjct:   523 MKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPNGIS 582

Query:   266 ---------------RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                            R LP+ L+ L+KL +L L+ T  L  +    IS    L+VL+L G
Sbjct:   583 ELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSG 640

Query:   311 CGF-WVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS-SLGVQNFLKYPKLVSITQ 368
               + W            D + + KEL   +HL VL+ T    +LG   FL   +L+S  +
Sbjct:   641 SSYAW------------DLDTV-KELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIR 687

Query:   369 SVLVKSGVHTSPPFNVLHLAY-MENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNT 427
              + + +  + +   + + L   M+ LQ+F +E C+  E+K+             F SL  
Sbjct:   688 FLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIE 739

Query:   428 VSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNF--FAQL 485
             V++  CR+ ++LT+L+F  NLK L +     +E+II+ +K  D     G +     F +L
Sbjct:   740 VNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKAHD-----GEKSGIVPFPKL 794

Query:   486 EYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERR---VVIEGEKK 542
               L +     LK++Y +PLPFP L+KI+V  CP LKKLPL+S S K      ++   E +
Sbjct:   795 NELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREME 854

Query:   543 WWEELQWEDQATQNAF 558
             W   ++WED+AT+  F
Sbjct:   855 WITRVEWEDEATKTRF 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
 Identities = 167/487 (34%), Positives = 245/487 (50%)

Query:   105 CSKNFVSNSEIPKRQLIDYWI-------SEXXXXXXXXXXXXXXXLLQACLLEEEGD--- 154
             CS  F  +  I K +LIDYWI        E               L+ A LL E G    
Sbjct:   414 CSL-FPEDDLIEKERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLLVEGGKFNN 472

Query:   155 -DHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRS 213
               +VKMHD++REM+LWIA  + K + N +V AG  L E PK ++W+   R+SL+ N I+ 
Sbjct:   473 KSYVKMHDVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKE 532

Query:   214 LSEIPTCPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272
             +   P CP+L TL L  NR +  I+  FF+SM  L VL L  N++L        GLP ++
Sbjct:   533 IHGSPECPKLTTLFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLS-------GLPDQI 585

Query:   273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG--C-----GFWVVTEEEG---- 321
               L  LRYL+L Y+  +  +P  L+    KL  L L    C     G   ++  +     
Sbjct:   586 SELVSLRYLDLSYSS-IGRLPVGLLK-LKKLMHLNLESMLCLESVSGIDHLSNLKTVRLL 643

Query:   322 NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP 381
             N+       L++EL   ++L VL+    SS  ++  L   +LV   Q V VK     S  
Sbjct:   644 NLRMWLTISLLEELERLENLEVLTIEIISSSALEQLLCSHRLVRCLQKVSVKYLDEES-- 701

Query:   382 FNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW 441
               +L L  + +L++  +  C + ++ I   E    L    F +L+ V +  C   KDLTW
Sbjct:   702 VRILTLPSIGDLREVFIGGCGMRDIII---ERNTSLTSPCFPNLSKVLITGCNGLKDLTW 758

Query:   442 LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT-NLKSVY 500
             L+F  NL  L + +   +EEIIS +K     ++       F +LEYL + W    LKS+Y
Sbjct:   759 LLFAPNLTHLNVWNSRQIEEIISQEKASTADIVP------FRKLEYLHL-WDLPELKSIY 811

Query:   501 PNPLPFPKLKKIDVCH-CPQLKKLPLNSSS---AKERRVVIEGEKKWWEELQWEDQATQN 556
              NPLPFP L +I+V + C +L KLPL+S S   A E  V+  G+++W E ++WED+AT+ 
Sbjct:   812 WNPLPFPCLNQINVQNKCRKLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWEDKATRL 871

Query:   557 AFSSRCR 563
              F   C+
Sbjct:   872 RFLPSCK 878

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 5.5e-61, Sum P(2) = 5.5e-61
 Identities = 152/477 (31%), Positives = 236/477 (49%)

Query:   115 IPKRQLIDYWISEXXXXXXXXXXXXXX-------XLLQACLLEEEGDD--HVKMHDMIRE 165
             I K +LIDYWI E                      L++ACLL EEG +   VKMHD++RE
Sbjct:   421 IKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVRE 480

Query:   166 MSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVT 225
             M+LW    + K ++  +V AG  L + PK E+W   +R+SLM NGI  +S  P CP L T
Sbjct:   481 MALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTT 540

Query:   226 LLLGGNR-IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLD 284
             L L  N+ +  I+  FF+ M  L VL L  N  L        GLP+++  L  LRYL+L 
Sbjct:   541 LFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLD-------GLPEQISELVALRYLDLS 593

Query:   285 YTRF---------LSIIPH-------QL--ISGFSKLEVLRLFGCGFWVVTEEEGNVLCE 326
             +T           L  + H       +L  I+G SKL  LR  G           N++ +
Sbjct:   594 HTNIEGLPACLQDLKTLIHLNLECMRRLGSIAGISKLSSLRTLGL-------RNSNIMLD 646

Query:   327 DAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLH 386
                  +KEL   +HL +L+    S++ ++  +    L++  Q V ++  ++       L 
Sbjct:   647 VMS--VKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLR 704

Query:   387 LAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQ 446
             L  M++L+   + +C + E++I+            F +L+ V +H C   KDLTWL+F  
Sbjct:   705 LPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAP 764

Query:   447 NLKVLRIGDCYDMEEIISVDKLRDISVIIGSE-HNF--FAQLEYLSISWGTNLKSVYPNP 503
             N+  L I     ++E+IS  K   ++     + H    F +L+ L +S    LKS+Y   
Sbjct:   765 NITYLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWIS 824

Query:   504 LPFPKLKKIDVCHCPQLKKLPLNSSSAKE-RRVVIE-GEKKWWEELQWEDQATQNAF 558
             L FP L  I V  CP+L+KLPL+S +    ++ V++  E +W E ++W+D+AT+  F
Sbjct:   825 LSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHF 881

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 167/497 (33%), Positives = 255/497 (51%)

Query:    95 EMDRLCLGGLCSKNFVSNSEIPKRQLIDYWISEXXXXXXXXXXXXXXXLL----QACLLE 150
             E  + C   L S  F  + EI K  LI+YW+ +               ++    +A LL+
Sbjct:   396 EKTKSCF--LFSALFPEDYEIGKDDLIEYWVGQGIILGSKGINYKGYTIIGTLTRAYLLK 453

Query:   151 E-EGDDHVKMHDMIREMSLWIA--CTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLM 207
             E E  + VKMHD++REM+LWI+  C   K++   +V A  +L + PK E+ +  +R+SL+
Sbjct:   454 ESETKEKVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLI 513

Query:   208 GNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS---- 263
              N I    E   CP+L TLLL  NR+ +I+  F   +  L VL L +N +L +LPS    
Sbjct:   514 YNQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELPSFSPL 573

Query:   264 -----------GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312
                        GI  LP  L AL  L YLNL++T  L  I    I     LEVL+L+  G
Sbjct:   574 YSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLYASG 631

Query:   313 FWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSV-L 371
                +T++           L++++   KHL +L+ T R+S G++ FL   +  S T+ + L
Sbjct:   632 I-DITDK-----------LVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTL 679

Query:   372 VKSGVHTS---PPFNVLHLAYME----NLQKFELESCNLEEMKIDSTEEVKKLFQSGFRS 424
              +   + S   P   +    ++E    ++ K E+E  +  E +I     V++     F +
Sbjct:   680 DEQSYYQSLKVPLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPR-VRR--DISFIN 736

Query:   425 LNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIIS---VDKLRDISVIIGSEHNF 481
             L  V +  C   KDLTWLVF  +L  L +    D+E IIS     +L+    + G     
Sbjct:   737 LRKVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP-- 794

Query:   482 FAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEK 541
             F +LE+L++     LKS+Y +PL F KLK+I++  CP+L KLPL+S SA ++ VVI  E+
Sbjct:   795 FRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEE 854

Query:   542 KWWEELQWEDQATQNAF 558
             +W + LQWED AT+  F
Sbjct:   855 EWLQGLQWEDVATKERF 871

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 5.7e-60, Sum P(2) = 5.7e-60
 Identities = 150/458 (32%), Positives = 227/458 (49%)

Query:    91 DRAQEMDRLCLGGLCSKNFVSNSEIPKRQLIDYWI-------SEXXXXXXXXXXXXXXXL 143
             D   E  +LC    CS  F  + E+ K +LI+YW+       +E               L
Sbjct:   399 DLKDEKVKLCFL-YCSL-FPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSL 456

Query:   144 LQACLLEE-EGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAK 202
             ++A LL + E    VKMHD+IREM+LWIA    K+++   V  GV+L   PK   WE  +
Sbjct:   457 VRAHLLMDGELTTKVKMHDVIREMALWIASNFGKQKETLCVKPGVQLCHIPKDINWESLR 516

Query:   203 RVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
             R+SLM N I ++S     P L TLLL  N++  I+  FF+ M  L VL L  N SL  LP
Sbjct:   517 RMSLMCNQIANISSSSNSPNLSTLLLQNNKLVHISCDFFRFMPALVVLDLSRNSSLSSLP 576

Query:   263 ----------------SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
                             +GI+ LP   K L+KL +LNL++T  L  I   + +    L+VL
Sbjct:   577 EAISKLGSLQYINLSTTGIKWLPVSFKELKKLIHLNLEFTDELESIVG-IATSLPNLQVL 635

Query:   307 RLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSI 366
             +LF            + +C D   LM+ELL  +HL VL+ T + +L +++     +LVS 
Sbjct:   636 KLFS-----------SRVCIDGS-LMEELLLLEHLKVLTATIKDALILESIQGVDRLVSS 683

Query:   367 TQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKID----STEEVKKLFQSGF 422
              Q++ +++    S P  +L+   +  LQ  E+    + E+KID       E+K     GF
Sbjct:   684 IQALCLRN---MSAPVIILNTVALGGLQHLEIVGSKISEIKIDWERKGRGELKCTSSPGF 740

Query:   423 RSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFF 482
             + L+ V +      +DLTWL+F QNL+ L +     +EEII+ +K   I+ +  +    F
Sbjct:   741 KHLSVVEIFNLEGPRDLTWLLFAQNLRRLSVTLSLTIEEIINKEKGMSITNVHPNIVVPF 800

Query:   483 AQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQL 520
              +LE+L +     LK +  NP   P L++ DV  C +L
Sbjct:   801 GKLEFLEVRGLDELKRICWNPPALPNLRQFDVRSCLKL 838

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 150/429 (34%), Positives = 223/429 (51%)

Query:   156 HVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS 215
             HV MHD++REM+LWIA    K+++N++V A V L E PK ++W   +R+SLM N I  ++
Sbjct:   472 HVVMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEIT 531

Query:   216 EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL------- 268
                 C  L TL L  N+++ ++  F + M  L VL L  N    +LP  I GL       
Sbjct:   532 CESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLD 591

Query:   269 ---------PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE 319
                      P  LK L+KL +LNL +T  L  I     SG S+L  LR      W+ +  
Sbjct:   592 LSWTRIEQLPVGLKELKKLIFLNLCFTERLCSI-----SGISRLLSLR------WL-SLR 639

Query:   320 EGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS 379
             E NV   DA  ++KEL   ++L  L  T  + L +    +  KL+S    VL   G    
Sbjct:   640 ESNVH-GDAS-VLKELQQLENLQDLRITESAEL-ISLDQRLAKLIS----VLRIEGF-LQ 691

Query:   380 PPFNVLHLAYMENLQKFELESCNLEEMKI---DSTEEVKKLFQSG----FRSLNTVSVHY 432
              PF++  LA MENL    +E+    E+ I   +S  E   L  +     F +L  + +  
Sbjct:   692 KPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMK 751

Query:   433 CRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISW 492
             C   KDLTW++F  NL  L I D  ++ EII+ +K  +++ II      F +LE L +  
Sbjct:   752 CHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITP----FQKLERLFLYG 807

Query:   493 GTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSA---KERRVVIEGEKKWWEELQW 549
                L+S+Y +PLPFP L  I V +CP+L+KLPLN++S    +E  + ++  ++   EL+W
Sbjct:   808 LPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQE-NELEW 866

Query:   550 EDQATQNAF 558
             ED+ T+N F
Sbjct:   867 EDEDTKNRF 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	566
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281
            L +L L  NR+  I DG F+ +  L+VL L  N +L  +       P+    L  LR L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSIS------PEAFSGLPSLRSL 53

Query: 282 NLDYTRF 288
           +L     
Sbjct: 54  DLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	566
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.54
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.33
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.97
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.65
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG4341	483	consensus F-box protein containing LRR [General fu	98.6
KOG4341	483	consensus F-box protein containing LRR [General fu	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.38
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.24
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.19
PLN03150	623	hypothetical protein; Provisional	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.0
PLN03150	623	hypothetical protein; Provisional	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.71
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.2
smart00370	26	LRR Leucine-rich repeats, outliers.	92.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.55
smart00370	26	LRR Leucine-rich repeats, outliers.	89.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.56
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.84
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.88

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-55  Score=479.55  Aligned_cols=525  Identities=32%  Similarity=0.463  Sum_probs=401.2

Q ss_pred             CCCceeecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHH--HhccccccCcchhhHH
Q 008415            1 MGNLISTFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIE--EQRPRTRRTNQVAGWL   75 (566)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la--~~~g~l~~~~~~~~W~   75 (566)
                      ||.+..+.+.|-..++||++|.+.|+.... ...        +++.++|++|+++|   |+|  ++||.|+.|+++++|+
T Consensus       306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~--------~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~  376 (889)
T KOG4658|consen  306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSH--------PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR  376 (889)
T ss_pred             ccCCccccccccCccccHHHHHHhhccccc-ccc--------ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence            788889999998889999999999975421 111        12678888889888   888  6689999999999999


Q ss_pred             HHHHHHHHh--------------hHHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCccccc---
Q 008415           76 EDVQKLETE--------------YTELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDD---  135 (566)
Q Consensus        76 ~~~~~l~~~--------------~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~---  135 (566)
                      ++.+.+.+.              +.+++|++||+++|.|| +||    |+|||   |++++||.+||||||+.+...   
T Consensus       377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF-Lyc----alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~  451 (889)
T KOG4658|consen  377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF-LYC----ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET  451 (889)
T ss_pred             HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH-Hhh----ccCCcccccchHHHHHHHHhccCcCccccccc
Confidence            999887653              23577899999999999 999    99999   999999999999999988442   


Q ss_pred             ----HhHHHHHHHHcccccccC----CcceecchhHHHHHHHHhcccCcccceEEEecCCccccCCCccccccccEEEee
Q 008415          136 ----GCDFIDDLLQACLLEEEG----DDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLM  207 (566)
Q Consensus       136 ----~~~~~~~L~~r~ll~~~~----~~~~~mHdli~dl~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~  207 (566)
                          |++|+.+|++++|++.++    ..+|+|||+|||||.|+|++.+..+++.++..+.+....|+...+..+|++++.
T Consensus       452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~  531 (889)
T KOG4658|consen  452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM  531 (889)
T ss_pred             hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence                999999999999999973    478999999999999999988887778777777677778889999999999999


Q ss_pred             cCCcccccCCCCCCCccEEEecCCc--ccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccC
Q 008415          208 GNGIRSLSEIPTCPRLVTLLLGGNR--IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDY  285 (566)
Q Consensus       208 ~~~~~~l~~~~~~~~Lr~L~l~~~~--l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~  285 (566)
                      ++.+..++....++.|++|.+.++.  +..++..+|..|+.||+|||++|..+.+||+       +|++|.|||||++++
T Consensus       532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-------~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-------SIGELVHLRYLDLSD  604 (889)
T ss_pred             ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-------HHhhhhhhhcccccC
Confidence            9999999988999999999999995  7889988899999999999999867765555       569999999999999


Q ss_pred             cccCCccchhhhcCCCCCcEEEecCCCCccc----------ccccc--cccccCccchHhhhcCCCCCceEEEEEcCccc
Q 008415          286 TRFLSIIPHQLISGFSKLEVLRLFGCGFWVV----------TEEEG--NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG  353 (566)
Q Consensus       286 ~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~  353 (566)
                      + .++.+|.+ +++|+.|.+|++..+.....          ++.+.  ......+...+.++.+|++|+.++++..+...
T Consensus       605 t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~  682 (889)
T KOG4658|consen  605 T-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL  682 (889)
T ss_pred             C-CccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence            8 88899988 89999999998887664331          00000  00112234455566666666666665433322


Q ss_pred             hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCcc-CCCcccEEecc
Q 008415          354 VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQS-GFRSLNTVSVH  431 (566)
Q Consensus       354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~-~l~~L~~L~L~  431 (566)
                      ++.+.....+.+..+.+.+.+ +  .......++..+.+|+.|.|.+|. .+. ...+..   ..... .|+++.++.+.
T Consensus       683 ~e~l~~~~~L~~~~~~l~~~~-~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~---~~~~~~~f~~l~~~~~~  755 (889)
T KOG4658|consen  683 LEDLLGMTRLRSLLQSLSIEG-C--SKRTLISSLGSLGNLEELSILDCGISEI-VIEWEE---SLIVLLCFPNLSKVSIL  755 (889)
T ss_pred             HhhhhhhHHHHHHhHhhhhcc-c--ccceeecccccccCcceEEEEcCCCchh-hccccc---ccchhhhHHHHHHHHhh
Confidence            233332222222333333322 1  123334567888999999999999 442 222221   01112 27789999999


Q ss_pred             cCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCcccccccee-eccccccccccCCCCCCCCCcc
Q 008415          432 YCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYL-SISWGTNLKSVYPNPLPFPKLK  510 (566)
Q Consensus       432 ~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L-~L~~~~~L~~l~~~~~~~p~L~  510 (566)
                      +|...+++.|....|+|+.|.+..|..++.+++.......   .......|+++..+ .+.+.+.+.++......++.|+
T Consensus       756 ~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~---l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~  832 (889)
T KOG4658|consen  756 NCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE---LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLE  832 (889)
T ss_pred             ccccccccchhhccCcccEEEEecccccccCCCHHHHhhh---cccEEecccccccceeeecCCCCceeEecccCccchh
Confidence            9999999999889999999999999999987753322110   11124567777888 5888888888877778889999


Q ss_pred             EEeecCCCCCCCCCCCCcccc---CCcEEEechhhhhhcccccchhhhhhc
Q 008415          511 KIDVCHCPQLKKLPLNSSSAK---ERRVVIEGEKKWWEELQWEDQATQNAF  558 (566)
Q Consensus       511 ~L~i~~C~~L~~lP~~~~~~l---~~L~i~~~~~~~~~~l~~~~~~~~~~~  558 (566)
                      .+.+..||++..+|.......   ....+..-+.+|.+.+.|++++++..|
T Consensus       833 ~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  833 ELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             heehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence            999999999999998765541   133444445668899999999999888

>PLN03210 Resistant to P

Probab=100.00  E-value=6.7e-39  Score=367.43  Aligned_cols=466  Identities=16%  Similarity=0.167  Sum_probs=278.8

Q ss_pred             ecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHH
Q 008415            7 TFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKL   81 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l   81 (566)
                      ..+...-.+++|++|+++||....+.+          ++.+++++|+++|   |+|+  +|+.|+ +++.++|+.+++++
T Consensus       346 ~~v~~l~~~ea~~LF~~~Af~~~~~~~----------~~~~l~~~iv~~c~GLPLAl~vlgs~L~-~k~~~~W~~~l~~L  414 (1153)
T PLN03210        346 YEVCLPSNELALEMFCRSAFKKNSPPD----------GFMELASEVALRAGNLPLGLNVLGSYLR-GRDKEDWMDMLPRL  414 (1153)
T ss_pred             EEecCCCHHHHHHHHHHHhcCCCCCcH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            333332347899999999986543332          3456677777777   8884  456554 56889999999998


Q ss_pred             HH-------hhHHHhhhchHH-HHHHHhcccccCccccCCC-CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc
Q 008415           82 ET-------EYTELERDRAQE-MDRLCLGGLCSKNFVSNSE-IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE  152 (566)
Q Consensus        82 ~~-------~~~~~~~~~L~~-~lK~Cf~lyc~~~~~~Fp~-i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~  152 (566)
                      +.       .+.+++|++|++ ..|.|| +||    |+||. .+.+ .+..|.|.+.+...    ..++.|+++||++..
T Consensus       415 ~~~~~~~I~~~L~~SYd~L~~~~~k~~F-l~i----a~ff~~~~~~-~v~~~l~~~~~~~~----~~l~~L~~ksLi~~~  484 (1153)
T PLN03210        415 RNGLDGKIEKTLRVSYDGLNNKKDKAIF-RHI----ACLFNGEKVN-DIKLLLANSDLDVN----IGLKNLVDKSLIHVR  484 (1153)
T ss_pred             HhCccHHHHHHHHHhhhccCccchhhhh-hee----hhhcCCCCHH-HHHHHHHhcCCCch----hChHHHHhcCCEEEc
Confidence            86       345788999986 599999 999    99999 5554 46777877655433    339999999999986


Q ss_pred             CCcceecchhHHHHHHHHhcccC--cccceEEEecCCccccCCCccccccccEEEeecCCccccc----CCCCCCCccEE
Q 008415          153 GDDHVKMHDMIREMSLWIACTVD--KEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS----EIPTCPRLVTL  226 (566)
Q Consensus       153 ~~~~~~mHdli~dl~~~i~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~----~~~~~~~Lr~L  226 (566)
                       ...++|||++||||++++++++  +.++.+++...+....+....+..+++.+++....+.++.    .+..+++|+.|
T Consensus       485 -~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L  563 (1153)
T PLN03210        485 -EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL  563 (1153)
T ss_pred             -CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence             4679999999999999998775  2345566654322222222233345666665544443321    23455555555


Q ss_pred             EecCCcc-------cccchHHHhcC-ccCCEEecCCCCCCccccccc---------------cccCcchhccccCcEecc
Q 008415          227 LLGGNRI-------EEITDGFFQSM-STLRVLSLRINISLRKLPSGI---------------RGLPQELKALEKLRYLNL  283 (566)
Q Consensus       227 ~l~~~~l-------~~lp~~~~~~l-~~Lr~L~L~~~~~i~~lp~~i---------------~~LP~~i~~L~~L~~L~L  283 (566)
                      .+..+..       ..+|.. +..+ .+||+|++.++ .++.+|..+               ..+|.++..+++|++|++
T Consensus       564 ~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L  641 (1153)
T PLN03210        564 KFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL  641 (1153)
T ss_pred             EEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEEC
Confidence            5543311       123444 2222 34555555555 555555433               345555678888888888


Q ss_pred             cCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcc
Q 008415          284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKL  363 (566)
Q Consensus       284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~  363 (566)
                      ++|..++.+|.  ++.+++|++|++.+|....              ..+..++++++|+.|+++.+.  .+..++... .
T Consensus       642 s~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~--------------~lp~si~~L~~L~~L~L~~c~--~L~~Lp~~i-~  702 (1153)
T PLN03210        642 RGSKNLKEIPD--LSMATNLETLKLSDCSSLV--------------ELPSSIQYLNKLEDLDMSRCE--NLEILPTGI-N  702 (1153)
T ss_pred             CCCCCcCcCCc--cccCCcccEEEecCCCCcc--------------ccchhhhccCCCCEEeCCCCC--CcCccCCcC-C
Confidence            88767788886  7888888888888876654              355566777777777776442  222222222 2


Q ss_pred             cccceEEEEecccCCCCCee------------------eeccccc-------------------------------cCcc
Q 008415          364 VSITQSVLVKSGVHTSPPFN------------------VLHLAYM-------------------------------ENLQ  394 (566)
Q Consensus       364 ~~~L~~L~l~~~~~~~~~~~------------------~~~l~~~-------------------------------~~L~  394 (566)
                      +++|+.|.+++ |.....+.                  ++....+                               ++|+
T Consensus       703 l~sL~~L~Lsg-c~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        703 LKSLYRLNLSG-CSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CCCCCEEeCCC-CCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence            34555555555 43211110                  0000011                               2333


Q ss_pred             eEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCccccccccc------
Q 008415          395 KFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDK------  467 (566)
Q Consensus       395 ~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~------  467 (566)
                      .|++++|. +..+|         .....+++|+.|+|++|+.++.+|....+++|+.|++++|..+..++....      
T Consensus       782 ~L~Ls~n~~l~~lP---------~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~  852 (1153)
T PLN03210        782 RLFLSDIPSLVELP---------SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN  852 (1153)
T ss_pred             heeCCCCCCccccC---------hhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence            33333333 22221         112345667777777766666666544566777777777666554432100      


Q ss_pred             -ccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 008415          468 -LRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL  525 (566)
Q Consensus       468 -~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~  525 (566)
                       ..+.-..+|..+..+++|+.|++.+|++|+.++.....+++|+.+++.+|++|+.++.
T Consensus       853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence             0000011344455667777777777777777766666667777777777777765543

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=7.6e-23  Score=203.63  Aligned_cols=277  Identities=19%  Similarity=0.230  Sum_probs=200.6

Q ss_pred             cccccEEEeecCCccc--cc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          198 WEGAKRVSLMGNGIRS--LS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~--l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      +..+|.+.+..|+++.  +| ++.++..|.+|+++.|++.+.|.. +..-+++-+|+||+| +|+.+|.++      +.+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~l------fin  148 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSL------FIN  148 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchH------HHh
Confidence            3455555555555543  33 457788899999999999999988 788899999999999 999999887      889


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV  354 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~  354 (566)
                      |+.|-+|||++| ++..+|+. +.+|.+|++|.+++|+...              ..+..+.+++.|+.|.++... ..+
T Consensus       149 LtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h--------------fQLrQLPsmtsL~vLhms~Tq-RTl  211 (1255)
T KOG0444|consen  149 LTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH--------------FQLRQLPSMTSLSVLHMSNTQ-RTL  211 (1255)
T ss_pred             hHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH--------------HHHhcCccchhhhhhhccccc-chh
Confidence            999999999999 89999999 9999999999999998865              677888888899999888532 345


Q ss_pred             hccccCCcccccceEEEEecccCCCCCeeee--ccccccCcceEEEeccccceeeecccccccccCccCCCcccEEeccc
Q 008415          355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVL--HLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHY  432 (566)
Q Consensus       355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~  432 (566)
                      .+++.++..+.+|..++++.     +.+...  .+-.+++|+.|++++|.++.+..         ......+|++|+++.
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~-----N~Lp~vPecly~l~~LrrLNLS~N~iteL~~---------~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSE-----NNLPIVPECLYKLRNLRRLNLSGNKITELNM---------TEGEWENLETLNLSR  277 (1255)
T ss_pred             hcCCCchhhhhhhhhccccc-----cCCCcchHHHhhhhhhheeccCcCceeeeec---------cHHHHhhhhhhcccc
Confidence            66677777778888888885     333222  36678899999999999555432         223557888898888


Q ss_pred             CcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccE
Q 008415          433 CRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKK  511 (566)
Q Consensus       433 c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~  511 (566)
                       +.++.+|. +..++.|+.|.+.++.. ..-+           +|+.++.+.+|+.+...+ .+|+-.|.+...++.|+.
T Consensus       278 -NQLt~LP~avcKL~kL~kLy~n~NkL-~FeG-----------iPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  278 -NQLTVLPDAVCKLTKLTKLYANNNKL-TFEG-----------IPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQK  343 (1255)
T ss_pred             -chhccchHHHhhhHHHHHHHhccCcc-cccC-----------CccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHH
Confidence             57777776 78888888888866532 2111           344555555666655554 345555555555555555


Q ss_pred             EeecCCCCCCCCCCCCc
Q 008415          512 IDVCHCPQLKKLPLNSS  528 (566)
Q Consensus       512 L~i~~C~~L~~lP~~~~  528 (566)
                      |.+ +|+.|..||+++.
T Consensus       344 L~L-~~NrLiTLPeaIH  359 (1255)
T KOG0444|consen  344 LKL-DHNRLITLPEAIH  359 (1255)
T ss_pred             hcc-cccceeechhhhh
Confidence            555 3355555555543

>PLN03210 Resistant to P

Probab=99.83  E-value=7.5e-20  Score=210.67  Aligned_cols=297  Identities=20%  Similarity=0.297  Sum_probs=163.4

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc-------------
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-------------  265 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i-------------  265 (566)
                      .++|.|.+.++.++.+|....+.+|+.|++.++.+..+|.. ++.+++|++|+|+++..++.+|..-             
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC  667 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence            35677777777776676655667777777777777777666 5667777777777663455555310             


Q ss_pred             ---cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccccc-ccc-----cccccCccchHhhhc
Q 008415          266 ---RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTE-EEG-----NVLCEDAEPLMKELL  336 (566)
Q Consensus       266 ---~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~-~~~-----~~~~~~~~~~~~~l~  336 (566)
                         ..+|.++++|++|++|++++|..++.+|.. + ++++|++|++.+|....... ...     .+........+. ..
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~-~~  744 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS-NL  744 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc-cc
Confidence               234444556666666666665555566653 3 55666666666554322100 000     000000000000 01


Q ss_pred             CCCCCceEEEEEcCccch----hcccc-CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecc
Q 008415          337 GSKHLNVLSWTFRSSLGV----QNFLK-YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDS  410 (566)
Q Consensus       337 ~L~~L~~L~i~~~~~~~~----~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~  410 (566)
                      .+++|+.|.+.......+    ..+.. ......+|+.|.+++ +.....+. ..+..+++|+.|++.+|. ++.+|.. 
T Consensus       745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~-n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~-  821 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD-IPSLVELP-SSIQNLHKLEHLEIENCINLETLPTG-  821 (1153)
T ss_pred             cccccccccccccchhhccccccccchhhhhccccchheeCCC-CCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCC-
Confidence            223333333321100000    00000 001124566666665 43222111 135677788888888877 6665422 


Q ss_pred             cccccccCccCCCcccEEecccCcC--------------------CCCCch-hhccCCcceEeEecccCccccccccccc
Q 008415          411 TEEVKKLFQSGFRSLNTVSVHYCRK--------------------AKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLR  469 (566)
Q Consensus       411 ~~~~~~~~~~~l~~L~~L~L~~c~~--------------------l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~  469 (566)
                               ..+++|++|++++|..                    ++.+|. ++.+++|+.|++.+|+.++.++      
T Consensus       822 ---------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~------  886 (1153)
T PLN03210        822 ---------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS------  886 (1153)
T ss_pred             ---------CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC------
Confidence                     1244455555554443                    344443 6778899999999999888755      


Q ss_pred             ccccccCCCCccccccceeeccccccccccCCCC-------------CCCCCccEEeecCCCCCCCCC
Q 008415          470 DISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-------------LPFPKLKKIDVCHCPQLKKLP  524 (566)
Q Consensus       470 ~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-------------~~~p~L~~L~i~~C~~L~~lP  524 (566)
                             .....+++|+.|.+.+|++|+.++...             ..+|....+.+.+|.+|..-+
T Consensus       887 -------~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a  947 (1153)
T PLN03210        887 -------LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA  947 (1153)
T ss_pred             -------cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence                   356788999999999999998765321             235566777888998887644

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=1.6e-19  Score=207.48  Aligned_cols=307  Identities=17%  Similarity=0.121  Sum_probs=154.8

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      .+.++|+|++++|.+........+++|++|++++|.+. .+|.. ++++++|++|+|++| .+.      ..+|..++++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~------~~~p~~~~~l  187 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLV------GKIPNSLTNL  187 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-ccc------ccCChhhhhC
Confidence            34566666666666554323345667777777777665 45555 677777777777777 554      2334445777


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ  355 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~  355 (566)
                      ++|++|++++|.....+|.. ++++++|++|++.+|....              ..+..++++++|+.|+++.+....  
T Consensus       188 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--------------~~p~~l~~l~~L~~L~L~~n~l~~--  250 (968)
T PLN00113        188 TSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG--------------EIPYEIGGLTSLNHLDLVYNNLTG--  250 (968)
T ss_pred             cCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC--------------cCChhHhcCCCCCEEECcCceecc--
Confidence            77777777777333345665 6777777777777666543              344556666666666665443211  


Q ss_pred             ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCc
Q 008415          356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR  434 (566)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  434 (566)
                      ..+.....+++|+.|.+++ +.- .......+..+++|+.|++++|. ...++.       +  ...+++|+.|+++++.
T Consensus       251 ~~p~~l~~l~~L~~L~L~~-n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-------~--~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        251 PIPSSLGNLKNLQYLFLYQ-NKL-SGPIPPSIFSLQKLISLDLSDNSLSGEIPE-------L--VIQLQNLEILHLFSNN  319 (968)
T ss_pred             ccChhHhCCCCCCEEECcC-Cee-eccCchhHhhccCcCEEECcCCeeccCCCh-------h--HcCCCCCcEEECCCCc
Confidence            1112222334555665554 210 00111124445555666665555 222110       0  1234445555554443


Q ss_pred             CCCCCch-hhccCCcceEeEecccCccccccccc-ccc----------cccccCCCCccccccceeeccccccccccCCC
Q 008415          435 KAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDK-LRD----------ISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN  502 (566)
Q Consensus       435 ~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~-~~~----------~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~  502 (566)
                      ....+|. +..+++|+.|++++|.....++..-. ...          ....+|..+..+++|+.|.+.++.-...++..
T Consensus       320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~  399 (968)
T PLN00113        320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS  399 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence            3222222 44444555555544432221111000 000          00001223444566666666665433344444


Q ss_pred             CCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEech
Q 008415          503 PLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE  540 (566)
Q Consensus       503 ~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~  540 (566)
                      ...+++|+.|++.+|.--..+|..+..+ +.|..++..
T Consensus       400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls  436 (968)
T PLN00113        400 LGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDIS  436 (968)
T ss_pred             HhCCCCCCEEECcCCEeeeECChhHhcC-CCCCEEECc
Confidence            5567888888888875434566655444 455554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=8.2e-19  Score=201.58  Aligned_cols=305  Identities=17%  Similarity=0.167  Sum_probs=206.5

Q ss_pred             cccccccEEEeecCCccc-cc-CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          196 EEWEGAKRVSLMGNGIRS-LS-EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       196 ~~~~~lr~Lsl~~~~~~~-l~-~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      ....++++|++.+|.+.. +| .+..+++|++|++++|.+. .+|.. ++++++|++|+|++| .+.      ..+|..+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~------~~~p~~l  208 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLV------GQIPREL  208 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCc------CcCChHH
Confidence            345789999999998763 44 3678999999999999875 56766 899999999999999 765      3455667


Q ss_pred             hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCcc
Q 008415          273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSL  352 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~  352 (566)
                      +++++|++|++++|.....+|.. ++++++|++|++.+|....              ..+..++++++|+.|+++.+...
T Consensus       209 ~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--------------~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG--------------PIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc--------------ccChhHhCCCCCCEEECcCCeee
Confidence            99999999999999433467877 8999999999999887754              45667888888888888755322


Q ss_pred             chhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecc
Q 008415          353 GVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVH  431 (566)
Q Consensus       353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~  431 (566)
                      .  ..+.....+.+|+.|++++ +.- .......+..+++|+.|++.+|. ...++         .....+++|+.|+++
T Consensus       274 ~--~~p~~l~~l~~L~~L~Ls~-n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------~~~~~l~~L~~L~L~  340 (968)
T PLN00113        274 G--PIPPSIFSLQKLISLDLSD-NSL-SGEIPELVIQLQNLEILHLFSNNFTGKIP---------VALTSLPRLQVLQLW  340 (968)
T ss_pred             c--cCchhHhhccCcCEEECcC-Cee-ccCCChhHcCCCCCcEEECCCCccCCcCC---------hhHhcCCCCCEEECc
Confidence            1  1222233346788888876 421 11111235667888888888877 33322         112357788888888


Q ss_pred             cCcCCCCCch-hhccCCcceEeEecccCcccccccccccc------------cccccCCCCccccccceeeccccccccc
Q 008415          432 YCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRD------------ISVIIGSEHNFFAQLEYLSISWGTNLKS  498 (566)
Q Consensus       432 ~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------------~~~~l~~~~~~f~~L~~L~L~~~~~L~~  498 (566)
                      +|.....+|. ++.+++|+.|++++|.....++. .+...            ....+|..+..+++|+.|++.++.--..
T Consensus       341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            7755545554 77778888888877654332221 11000            0012344567789999999999864445


Q ss_pred             cCCCCCCCCCccEEeecCCCCCCC-CCCCCccccCCcEEEec
Q 008415          499 VYPNPLPFPKLKKIDVCHCPQLKK-LPLNSSSAKERRVVIEG  539 (566)
Q Consensus       499 l~~~~~~~p~L~~L~i~~C~~L~~-lP~~~~~~l~~L~i~~~  539 (566)
                      ++.....+++|+.|++.++. +.. +|...... +.|+.++.
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L  459 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNN-LQGRINSRKWDM-PSLQMLSL  459 (968)
T ss_pred             CChhHhcCCCCCEEECcCCc-ccCccChhhccC-CCCcEEEC
Confidence            66666779999999999975 554 55444333 44444433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=3.6e-19  Score=176.56  Aligned_cols=322  Identities=19%  Similarity=0.214  Sum_probs=185.5

Q ss_pred             cCCccccCCCcccc-ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415          185 AGVELTEAPKFEEW-EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL  261 (566)
Q Consensus       185 ~~~~~~~~~~~~~~-~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l  261 (566)
                      ..+.+..+|..... .++.+|++.+|.|..+.  +..-++.||+|+++.|.+.++|...|..-.++++|+|++| .|+.+
T Consensus       110 ~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l  188 (873)
T KOG4194|consen  110 NKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTL  188 (873)
T ss_pred             ccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-ccccc
Confidence            33445556654443 45777888777776654  3456777888888888777777655666677888888888 88776


Q ss_pred             cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415          262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL  341 (566)
Q Consensus       262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  341 (566)
                      -..-      +..|.+|-+|.|+.| .++.+|..++.+|++|+.|++..|.+...              .--.+..|++|
T Consensus       189 ~~~~------F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv--------------e~ltFqgL~Sl  247 (873)
T KOG4194|consen  189 ETGH------FDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV--------------EGLTFQGLPSL  247 (873)
T ss_pred             cccc------ccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee--------------hhhhhcCchhh
Confidence            6543      678888999999998 78999987688899999999988877541              12223444555


Q ss_pred             ceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccC
Q 008415          342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSG  421 (566)
Q Consensus       342 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~  421 (566)
                      +.|.+..++...++.-.  .-.+..++.|++..  +....+....+-+++.|+.|+++.|.++.+.++     +|.   .
T Consensus       248 ~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~--N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-----~Ws---f  315 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGA--FYGLEKMEHLNLET--NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-----SWS---F  315 (873)
T ss_pred             hhhhhhhcCcccccCcc--eeeecccceeeccc--chhhhhhcccccccchhhhhccchhhhheeecc-----hhh---h
Confidence            55555444333322210  11124556666653  222222223355566677777766665544433     231   3


Q ss_pred             CCcccEEecccCcCCCCCch--hhccCCcceEeEecccCcccccccccccc------------ccccc---CCCCccccc
Q 008415          422 FRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCYDMEEIISVDKLRD------------ISVII---GSEHNFFAQ  484 (566)
Q Consensus       422 l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------------~~~~l---~~~~~~f~~  484 (566)
                      .++|+.|+|+. +.++.++.  +..|..|++|.++++. +..+-..-|.+-            ..|.+   ...+.++|+
T Consensus       316 tqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  316 TQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             cccceeEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            45666666655 34554433  4444444444444432 111110000000            00001   013556888


Q ss_pred             cceeeccccccccccCCC-CCCCCCccEEeecCCCCCCC-CCCCCccc-cCCcEE------Eechhhhh
Q 008415          485 LEYLSISWGTNLKSVYPN-PLPFPKLKKIDVCHCPQLKK-LPLNSSSA-KERRVV------IEGEKKWW  544 (566)
Q Consensus       485 L~~L~L~~~~~L~~l~~~-~~~~p~L~~L~i~~C~~L~~-lP~~~~~~-l~~L~i------~~~~~~~~  544 (566)
                      |+.|.+.+ .+++.++.. ..-+++|++|++.+- .+.+ =|..+.+. +++|.+      =+|.-.|.
T Consensus       394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl  460 (873)
T KOG4194|consen  394 LRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMNSSSFLCDCQLKWL  460 (873)
T ss_pred             hhheeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhhcccceEEeccHHHH
Confidence            88888887 568887754 344788888888874 4555 34445444 444433      26665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=4e-20  Score=184.43  Aligned_cols=295  Identities=17%  Similarity=0.220  Sum_probs=220.7

Q ss_pred             EEEecCCccccCCC-ccccccccEEEeecCCccccc-CCCCCCCccEEEecCCccc--ccchHHHhcCccCCEEecCCCC
Q 008415          181 FLVHAGVELTEAPK-FEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINI  256 (566)
Q Consensus       181 ~~~~~~~~~~~~~~-~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~  256 (566)
                      .+......+..+|. ...+.++.||++..|++..+. +...++.||++++..|++.  .+|.. +-++..|.+||||+| 
T Consensus        36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-  113 (1255)
T KOG0444|consen   36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-  113 (1255)
T ss_pred             EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-
Confidence            44555556666663 445678999999999887664 5688999999999999765  68998 777999999999999 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhc
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELL  336 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (566)
                      .+++.|.       .+.+-+++-.|+|++| +|..||..++-+|+-|-.|++++|....               .+..+.
T Consensus       114 qL~EvP~-------~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~---------------LPPQ~R  170 (1255)
T KOG0444|consen  114 QLREVPT-------NLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM---------------LPPQIR  170 (1255)
T ss_pred             hhhhcch-------hhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh---------------cCHHHH
Confidence            8876554       4588899999999999 8999999988999999999999988754               788889


Q ss_pred             CCCCCceEEEEEcCccc--hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccc
Q 008415          337 GSKHLNVLSWTFRSSLG--VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEV  414 (566)
Q Consensus       337 ~L~~L~~L~i~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~  414 (566)
                      .|.+|++|.++.+....  +..+++    +.+|+.|++++ .+........++..+.+|..++++.|.+..+|..     
T Consensus       171 RL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~-TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec-----  240 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSN-TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC-----  240 (1255)
T ss_pred             HHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhccc-ccchhhcCCCchhhhhhhhhccccccCCCcchHH-----
Confidence            99999999998654332  223322    25677777776 3321111223567778888888888775544322     


Q ss_pred             cccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415          415 KKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       415 ~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                          ...+++|+.|+|++ +.++.+.. .+.-.+|+.|+++.+.. ..             +|..+..+++|+.|.+.+-
T Consensus       241 ----ly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQL-t~-------------LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  241 ----LYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQL-TV-------------LPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             ----HhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchh-cc-------------chHHHhhhHHHHHHHhccC
Confidence                13568888888888 46666644 56667888888887643 22             4557788999999999863


Q ss_pred             c-cccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc
Q 008415          494 T-NLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSA  530 (566)
Q Consensus       494 ~-~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~  530 (566)
                      . +.+.+|.+.+.+.+|+.+...+ ++|+-+|+++.+.
T Consensus       302 kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC  338 (1255)
T KOG0444|consen  302 KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRC  338 (1255)
T ss_pred             cccccCCccchhhhhhhHHHHhhc-cccccCchhhhhh
Confidence            2 3567899999999999998887 6788888887664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.69  E-value=1.7e-18  Score=171.83  Aligned_cols=295  Identities=20%  Similarity=0.253  Sum_probs=201.7

Q ss_pred             ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          199 EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .++.+|.+.+|.|..+.  .+..+.+|.+|.++.|.++.+|...|+++++|+.|+|..| .|+..--      ..+..|.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~------ltFqgL~  245 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEG------LTFQGLP  245 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehh------hhhcCch
Confidence            46778888888877654  4566778888888888888888877788888888888888 7654321      1257788


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN  356 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~  356 (566)
                      +|+.|.+..| .+..+-++++..|.++++|++..|....              -.-+.+-+|+.|+.|+++.+....+. 
T Consensus       246 Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------------vn~g~lfgLt~L~~L~lS~NaI~rih-  309 (873)
T KOG4194|consen  246 SLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQA--------------VNEGWLFGLTSLEQLDLSYNAIQRIH-  309 (873)
T ss_pred             hhhhhhhhhc-CcccccCcceeeecccceeecccchhhh--------------hhcccccccchhhhhccchhhhheee-
Confidence            8888888888 7888888878888888888888877654              23445778888899998865432221 


Q ss_pred             cccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcC-
Q 008415          357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK-  435 (566)
Q Consensus       357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-  435 (566)
                       .........|+.|+++.  +....++..++..+..|+.|+++.|.+..+....        ...+.+|++|+|+.... 
T Consensus       310 -~d~WsftqkL~~LdLs~--N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a--------f~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  310 -IDSWSFTQKLKELDLSS--NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA--------FVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             -cchhhhcccceeEeccc--cccccCChhHHHHHHHhhhhcccccchHHHHhhH--------HHHhhhhhhhcCcCCeEE
Confidence             11223447888999986  5555666667888889999999998855443221        13568999999876321 


Q ss_pred             --CCCC-chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccE
Q 008415          436 --AKDL-TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKK  511 (566)
Q Consensus       436 --l~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~  511 (566)
                        +++- -.+..+++|+.|.+.++ .++.|..            ..+.+|+.|++|+|.+-+ +.++-... ..+ .|++
T Consensus       379 ~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k------------rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~  443 (873)
T KOG4194|consen  379 WCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK------------RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKE  443 (873)
T ss_pred             EEEecchhhhccchhhhheeecCc-eeeecch------------hhhccCcccceecCCCCc-ceeecccccccc-hhhh
Confidence              1221 12555999999999886 5666654            357789999999998854 55554332 334 7888


Q ss_pred             Eeec------CCCCCCCCCCCCccc-cCCcEEEec-hhhh
Q 008415          512 IDVC------HCPQLKKLPLNSSSA-KERRVVIEG-EKKW  543 (566)
Q Consensus       512 L~i~------~C~~L~~lP~~~~~~-l~~L~i~~~-~~~~  543 (566)
                      |.+.      +| .|+=++..+-.. ++.-.+..| .++|
T Consensus       444 Lv~nSssflCDC-ql~Wl~qWl~~~~lq~sv~a~CayPe~  482 (873)
T KOG4194|consen  444 LVMNSSSFLCDC-QLKWLAQWLYRRKLQSSVIAKCAYPEP  482 (873)
T ss_pred             hhhcccceEEec-cHHHHHHHHHhcccccceeeeccCCcc
Confidence            8764      45 456566665444 455555444 3444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=9.4e-18  Score=159.68  Aligned_cols=308  Identities=20%  Similarity=0.228  Sum_probs=187.1

Q ss_pred             CccccCC-CccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc
Q 008415          187 VELTEAP-KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI  265 (566)
Q Consensus       187 ~~~~~~~-~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i  265 (566)
                      ..+..+| ....++++..+.++.|++..+|++..|..|..|.+..|+++.+|....+++.+|.+|||+.| .+++.|+. 
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-  270 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-  270 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-
Confidence            3444454 45667888889999999999999999999999999999999999997779999999999999 99776654 


Q ss_pred             cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc--------c----------ccccccccc-
Q 008415          266 RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV--------T----------EEEGNVLCE-  326 (566)
Q Consensus       266 ~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~--------~----------~~~~~~~~~-  326 (566)
                            ++.|++|.+||+++| .++.+|.+ +|+| +|+.|-+.|++....        .          ....+...+ 
T Consensus       271 ------~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se  341 (565)
T KOG0472|consen  271 ------ICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE  341 (565)
T ss_pred             ------HHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence                  699999999999999 89999998 9999 999999999987532        0          000000000 


Q ss_pred             --------CccchHhhhcCCCCCceEEEEEcCccchhc-cccCCcccccceEEEEecccCCCCCe-eee-ccccccCcce
Q 008415          327 --------DAEPLMKELLGSKHLNVLSWTFRSSLGVQN-FLKYPKLVSITQSVLVKSGVHTSPPF-NVL-HLAYMENLQK  395 (566)
Q Consensus       327 --------~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~l~~~~~L~~  395 (566)
                              .......+...+.+.+.|+++....+..+. ++... ...-....+++.     +.. .++ .+..+..+.+
T Consensus       342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~Vnfsk-----NqL~elPk~L~~lkelvT  415 (565)
T KOG0472|consen  342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSK-----NQLCELPKRLVELKELVT  415 (565)
T ss_pred             ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEeccc-----chHhhhhhhhHHHHHHHH
Confidence                    011112222333344444444322111110 00000 001112222222     000 000 1111222222


Q ss_pred             EEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCccccccccc------
Q 008415          396 FELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDK------  467 (566)
Q Consensus       396 L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~------  467 (566)
                      .-+..++ +.+++         .....+++|+.|++++ +.+.++|. ++++..|+.|+|+.+. ...++..-.      
T Consensus       416 ~l~lsnn~isfv~---------~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lE  484 (565)
T KOG0472|consen  416 DLVLSNNKISFVP---------LELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLE  484 (565)
T ss_pred             HHHhhcCccccch---------HHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHH
Confidence            1111112 33221         1124677888888877 45666665 7777788888887663 222221000      


Q ss_pred             -cccc---ccccC-CCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 008415          468 -LRDI---SVIIG-SEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL  525 (566)
Q Consensus       468 -~~~~---~~~l~-~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~  525 (566)
                       +-..   -..++ ..++.+.+|..|++.+ ..++.+|...+.|.+|++|.+.+-| ++ .|.
T Consensus       485 tllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr  544 (565)
T KOG0472|consen  485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR-QPR  544 (565)
T ss_pred             HHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-CCH
Confidence             0000   00122 2377888999999987 5688999999999999999999853 44 553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=3.8e-17  Score=155.58  Aligned_cols=206  Identities=22%  Similarity=0.306  Sum_probs=137.6

Q ss_pred             CCccccCC-CccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccc
Q 008415          186 GVELTEAP-KFEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS  263 (566)
Q Consensus       186 ~~~~~~~~-~~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~  263 (566)
                      ++.+...| .+....+..++..+.|.+..+| +......|+.|+.+.|.+.++|++ ++.+..|..|+..+| .+.++|.
T Consensus        77 ~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N-~i~slp~  154 (565)
T KOG0472|consen   77 DNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNN-QISSLPE  154 (565)
T ss_pred             cchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccc-ccccCch
Confidence            33344443 3445566677777777777766 456777888888888888888877 777778888888877 7888887


Q ss_pred             cc----------------cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccc-----c
Q 008415          264 GI----------------RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEG-----N  322 (566)
Q Consensus       264 ~i----------------~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~-----~  322 (566)
                      ++                ..+|...-+++.|++||...| -++.+|++ ++.|.+|+.|++..+.+...-+...     .
T Consensus       155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E  232 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIRFLPEFPGCSLLKE  232 (565)
T ss_pred             HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence            76                566666666788888888887 78888887 8888888888888777654210000     0


Q ss_pred             c-cc-cCccchHh-hhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeee--eccccccCcceEE
Q 008415          323 V-LC-EDAEPLMK-ELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNV--LHLAYMENLQKFE  397 (566)
Q Consensus       323 ~-~~-~~~~~~~~-~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~l~~~~~L~~L~  397 (566)
                      + ++ ......+. .+++|++|..|++..+   .+..++....++++|+.|++++     +++..  .+++++ +|+.|-
T Consensus       233 lh~g~N~i~~lpae~~~~L~~l~vLDLRdN---klke~Pde~clLrsL~rLDlSN-----N~is~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  233 LHVGENQIEMLPAEHLKHLNSLLVLDLRDN---KLKEVPDEICLLRSLERLDLSN-----NDISSLPYSLGNL-HLKFLA  303 (565)
T ss_pred             HHhcccHHHhhHHHHhcccccceeeecccc---ccccCchHHHHhhhhhhhcccC-----CccccCCcccccc-eeeehh
Confidence            0 00 00112223 3457888888888855   3444555556668888999987     33322  257777 899999


Q ss_pred             Eeccccc
Q 008415          398 LESCNLE  404 (566)
Q Consensus       398 l~~~~l~  404 (566)
                      +.|+++.
T Consensus       304 leGNPlr  310 (565)
T KOG0472|consen  304 LEGNPLR  310 (565)
T ss_pred             hcCCchH
Confidence            9988843

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.54  E-value=2.7e-16  Score=164.40  Aligned_cols=69  Identities=23%  Similarity=0.328  Sum_probs=58.9

Q ss_pred             ccccccccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI  265 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i  265 (566)
                      +....+++.+.++.|.+..+|. ..++.+|+.|.+.+|.+..+|.+ +..+++|.+|++++| .+...|..+
T Consensus        64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N-~f~~~Pl~i  133 (1081)
T KOG0618|consen   64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFN-HFGPIPLVI  133 (1081)
T ss_pred             hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh-HHhhhcccccccchh-ccCCCchhH
Confidence            4445678888888888888873 47889999999999999999998 899999999999999 888888766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.53  E-value=9e-14  Score=149.74  Aligned_cols=253  Identities=19%  Similarity=0.105  Sum_probs=161.7

Q ss_pred             ceEEEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          179 QNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      ...+......+..+|..- ...++.|++..|+++.+|..  +++|++|++++|.++.+|..    .++|+.|++++| .+
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L  274 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PL  274 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-ch
Confidence            345666666777777522 35789999999999988754  58999999999999888853    468999999999 88


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.+|..          ..+|+.|++++| .++.+|..    +++|++|++++|.+..            .+..      .
T Consensus       275 ~~Lp~l----------p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~------------Lp~l------p  321 (788)
T PRK15387        275 THLPAL----------PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS------------LPAL------P  321 (788)
T ss_pred             hhhhhc----------hhhcCEEECcCC-cccccccc----ccccceeECCCCcccc------------CCCC------c
Confidence            877642          246778899998 78888863    4689999998887654            1111      1


Q ss_pred             CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415          339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF  418 (566)
Q Consensus       339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~  418 (566)
                      .+|+.|.+..+....++.      ...+|+.|++++ .. ...  ++.+  .++|+.|++++|.+..+|.          
T Consensus       322 ~~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~-N~-Ls~--LP~l--p~~L~~L~Ls~N~L~~LP~----------  379 (788)
T PRK15387        322 SELCKLWAYNNQLTSLPT------LPSGLQELSVSD-NQ-LAS--LPTL--PSELYKLWAYNNRLTSLPA----------  379 (788)
T ss_pred             ccccccccccCccccccc------cccccceEecCC-Cc-cCC--CCCC--CcccceehhhccccccCcc----------
Confidence            235555555443333322      224677777775 21 111  1111  2467777777766443321          


Q ss_pred             ccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc
Q 008415          419 QSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS  498 (566)
Q Consensus       419 ~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~  498 (566)
                        .+++|+.|+++++ .+..+|..  .++|+.|+++++. +..++.                .+.+|+.|++.+ .+++.
T Consensus       380 --l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----------------l~~~L~~L~Ls~-NqLt~  436 (788)
T PRK15387        380 --LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYR-NQLTR  436 (788)
T ss_pred             --cccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc----------------chhhhhhhhhcc-Ccccc
Confidence              2346777777764 45555543  3567777777764 333321                234566777766 34666


Q ss_pred             cCCCCCCCCCccEEeecCC
Q 008415          499 VYPNPLPFPKLKKIDVCHC  517 (566)
Q Consensus       499 l~~~~~~~p~L~~L~i~~C  517 (566)
                      +|.....+++|+.|++.++
T Consensus       437 LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             cChHHhhccCCCeEECCCC
Confidence            6666666777777777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.48  E-value=5.7e-14  Score=154.47  Aligned_cols=312  Identities=23%  Similarity=0.271  Sum_probs=200.4

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCC--cccccC--CCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNG--IRSLSE--IPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRIN  255 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~--~~~l~~--~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~  255 (566)
                      .++..+.....++......++++|-+..|.  +..++.  +..++.||+|++++| ++.++|.+ ++.+-+||||+|+++
T Consensus       527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT  605 (889)
T ss_pred             EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence            344445555555555555689999999886  555554  688999999999988 67899998 999999999999999


Q ss_pred             CCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc---------cccccccccc
Q 008415          256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV---------TEEEGNVLCE  326 (566)
Q Consensus       256 ~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~---------~~~~~~~~~~  326 (566)
                       .+..||.       ++++|+.|.||++..+..+..+|.. +..|++||+|.+........         ++.+..+..+
T Consensus       606 -~I~~LP~-------~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  606 -GISHLPS-------GLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             -Cccccch-------HHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence             8876655       4699999999999999777777663 67799999999987652211         1122222221


Q ss_pred             C-ccchHhhhcCCCCCceEEEEEc-CccchhccccCCcccccceEEEEecccCCCCCee-e---eccc-cccCcceEEEe
Q 008415          327 D-AEPLMKELLGSKHLNVLSWTFR-SSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFN-V---LHLA-YMENLQKFELE  399 (566)
Q Consensus       327 ~-~~~~~~~l~~L~~L~~L~i~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~l~-~~~~L~~L~l~  399 (566)
                      . .......+..+..|+.+..... ..............+.+|+.|.+.. |...+... .   .... .++++..+.+.
T Consensus       677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~e~~~~~~~~~~~~~~f~~l~~~~~~  755 (889)
T KOG4658|consen  677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD-CGISEIVIEWEESLIVLLCFPNLSKVSIL  755 (889)
T ss_pred             cchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc-CCCchhhcccccccchhhhHHHHHHHHhh
Confidence            1 1122344445555543332221 1134455556666778999999998 76422111 0   0111 14566666666


Q ss_pred             ccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCC
Q 008415          400 SCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGS  477 (566)
Q Consensus       400 ~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~  477 (566)
                      +|. ...+        .|.  ...++|+.|.+..|+.++++.+ ...+..++.+.+..+ .......          + .
T Consensus       756 ~~~~~r~l--------~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~----------~-~  813 (889)
T KOG4658|consen  756 NCHMLRDL--------TWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRM----------L-C  813 (889)
T ss_pred             cccccccc--------chh--hccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-cccccee----------e-e
Confidence            766 4432        222  3569999999999999988644 555555655333322 2221100          0 1


Q ss_pred             CCccccccceeeccccccccccCCCC----CCCCCccEEeecCC-CCCCCCCCC
Q 008415          478 EHNFFAQLEYLSISWGTNLKSVYPNP----LPFPKLKKIDVCHC-PQLKKLPLN  526 (566)
Q Consensus       478 ~~~~f~~L~~L~L~~~~~L~~l~~~~----~~~p~L~~L~i~~C-~~L~~lP~~  526 (566)
                      +.+.||++..+.+.... |+.|..+.    ..+|.+.++.+.+| +.+..+|.+
T Consensus       814 ~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  814 SLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             cCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence            34455555555555432 55444443    56899999999997 889999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.44  E-value=7e-13  Score=142.94  Aligned_cols=254  Identities=19%  Similarity=0.150  Sum_probs=178.9

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      .-..|++..+.+..+|... .++|+.|.+.+|+++.+|..    +++|++|++++| .++.+|..          ..+|+
T Consensus       202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l----------p~sL~  265 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL----------PPGLL  265 (788)
T ss_pred             CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc----------ccccc
Confidence            4556788888888887632 35899999999999988863    688999999999 99887742          25788


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| .++.+|..    ..+|+.|++.+|.+..               .+.   .+++|+.|+++.+....++.+  
T Consensus       266 ~L~Ls~N-~L~~Lp~l----p~~L~~L~Ls~N~Lt~---------------LP~---~p~~L~~LdLS~N~L~~Lp~l--  320 (788)
T PRK15387        266 ELSIFSN-PLTHLPAL----PSGLCKLWIFGNQLTS---------------LPV---LPPGLQELSVSDNQLASLPAL--  320 (788)
T ss_pred             eeeccCC-chhhhhhc----hhhcCEEECcCCcccc---------------ccc---cccccceeECCCCccccCCCC--
Confidence            9999999 78888873    3678899999887754               111   236789999987654444332  


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                          ...|+.|.+.+ +. ...  ++.+  ..+|+.|++++|.+..+|.            .+++|+.|++++ +.+..+
T Consensus       321 ----p~~L~~L~Ls~-N~-L~~--LP~l--p~~Lq~LdLS~N~Ls~LP~------------lp~~L~~L~Ls~-N~L~~L  377 (788)
T PRK15387        321 ----PSELCKLWAYN-NQ-LTS--LPTL--PSGLQELSVSDNQLASLPT------------LPSELYKLWAYN-NRLTSL  377 (788)
T ss_pred             ----ccccccccccc-Cc-ccc--cccc--ccccceEecCCCccCCCCC------------CCcccceehhhc-cccccC
Confidence                24577777776 32 111  1221  2489999999988665431            246788999887 467777


Q ss_pred             chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCC
Q 008415          440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQ  519 (566)
Q Consensus       440 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~  519 (566)
                      |.+  .++|+.|+++++. +..++.                .+++|+.|+++++ .++.+|.   .+.+|+.|++.+ ++
T Consensus       378 P~l--~~~L~~LdLs~N~-Lt~LP~----------------l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~-Nq  433 (788)
T PRK15387        378 PAL--PSGLKELIVSGNR-LTSLPV----------------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQ  433 (788)
T ss_pred             ccc--ccccceEEecCCc-ccCCCC----------------cccCCCEEEccCC-cCCCCCc---chhhhhhhhhcc-Cc
Confidence            754  3689999998874 333321                2468999999986 4777773   346789999988 57


Q ss_pred             CCCCCCCCccccCCcEEEechhh
Q 008415          520 LKKLPLNSSSAKERRVVIEGEKK  542 (566)
Q Consensus       520 L~~lP~~~~~~l~~L~i~~~~~~  542 (566)
                      |+.+|..+..+ ..|..++...+
T Consensus       434 Lt~LP~sl~~L-~~L~~LdLs~N  455 (788)
T PRK15387        434 LTRLPESLIHL-SSETTVNLEGN  455 (788)
T ss_pred             ccccChHHhhc-cCCCeEECCCC
Confidence            99999876655 56655555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=3.4e-14  Score=120.36  Aligned_cols=156  Identities=24%  Similarity=0.318  Sum_probs=104.1

Q ss_pred             ccCCCccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccccccc
Q 008415          190 TEAPKFEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL  268 (566)
Q Consensus       190 ~~~~~~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L  268 (566)
                      .+++..-.++.++++.++.|.+..+| .+..+.+|++|.+++|+++++|.+ ++.+++||.|++.-| .+..+|.     
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lpr-----   96 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPR-----   96 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCcc-----
Confidence            34455556677888888888877664 567788888888888888888887 788888888888877 6655444     


Q ss_pred             CcchhccccCcEecccCcccCC--ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEE
Q 008415          269 PQELKALEKLRYLNLDYTRFLS--IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSW  346 (566)
Q Consensus       269 P~~i~~L~~L~~L~L~~~~~l~--~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i  346 (566)
                        ++|.++-|+.||+.+| ++.  .+|.. +-.|+.|+.|+++.+....               .+.++++|++|+.|.+
T Consensus        97 --gfgs~p~levldltyn-nl~e~~lpgn-ff~m~tlralyl~dndfe~---------------lp~dvg~lt~lqil~l  157 (264)
T KOG0617|consen   97 --GFGSFPALEVLDLTYN-NLNENSLPGN-FFYMTTLRALYLGDNDFEI---------------LPPDVGKLTNLQILSL  157 (264)
T ss_pred             --ccCCCchhhhhhcccc-ccccccCCcc-hhHHHHHHHHHhcCCCccc---------------CChhhhhhcceeEEee
Confidence              4577777777777776 443  36666 6666677777776665543               5666667777776666


Q ss_pred             EEcCccchhccccCCcccccceEEEEec
Q 008415          347 TFRSSLGVQNFLKYPKLVSITQSVLVKS  374 (566)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~  374 (566)
                      ..++..   .++...+.+..|+.|++.+
T Consensus       158 rdndll---~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  158 RDNDLL---SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             ccCchh---hCcHHHHHHHHHHHHhccc
Confidence            644322   2333334445666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.34  E-value=3.7e-12  Score=138.17  Aligned_cols=93  Identities=19%  Similarity=0.413  Sum_probs=40.3

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      ..+.+.++++..+|... .++|+.|++++|.+..+|..+   ..+|++|++++| .++.+|..+   |      .+|+.|
T Consensus       181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l---~------~~L~~L  246 (754)
T PRK15370        181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATL---P------DTIQEM  246 (754)
T ss_pred             eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhh---h------ccccEE
Confidence            34444444444444311 234555555555554454432   134555555555 444444321   1      234445


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCC
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCG  312 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~  312 (566)
                      ++++| .+..+|.. +.  .+|+.|++++|.
T Consensus       247 ~Ls~N-~L~~LP~~-l~--s~L~~L~Ls~N~  273 (754)
T PRK15370        247 ELSIN-RITELPER-LP--SALQSLDLFHNK  273 (754)
T ss_pred             ECcCC-ccCcCChh-Hh--CCCCEEECcCCc
Confidence            55554 44444443 22  244555554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.33  E-value=5.8e-12  Score=136.69  Aligned_cols=242  Identities=17%  Similarity=0.174  Sum_probs=156.6

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL  261 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l  261 (566)
                      +...+.++..+|..- ...++.|.+.+|.+..+|... +++|++|++++|.+..+|..+   ..+|+.|+|++| .+..+
T Consensus       183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~L  256 (754)
T PRK15370        183 LRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITEL  256 (754)
T ss_pred             EEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcC
Confidence            444555666666421 357999999999999887543 469999999999999999763   357999999999 99888


Q ss_pred             cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415          262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL  341 (566)
Q Consensus       262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  341 (566)
                      |..+       .  .+|++|++++| +++.+|.. +.  .+|++|++++|.+..               .+..+.  ++|
T Consensus       257 P~~l-------~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~---------------LP~~lp--~sL  306 (754)
T PRK15370        257 PERL-------P--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRT---------------LPAHLP--SGI  306 (754)
T ss_pred             ChhH-------h--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCcccc---------------Ccccch--hhH
Confidence            7543       2  47999999998 89999986 54  589999999987654               111111  346


Q ss_pred             ceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccC
Q 008415          342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSG  421 (566)
Q Consensus       342 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~  421 (566)
                      +.|+++.+....++.     ....+|+.|.+.+ +. ...+. ..+  .++|+.|++++|.+..+|.           ..
T Consensus       307 ~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~-N~-Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~-----------~l  365 (754)
T PRK15370        307 THLNVQSNSLTALPE-----TLPPGLKTLEAGE-NA-LTSLP-ASL--PPELQVLDVSKNQITVLPE-----------TL  365 (754)
T ss_pred             HHHHhcCCccccCCc-----cccccceeccccC-Cc-cccCC-hhh--cCcccEEECCCCCCCcCCh-----------hh
Confidence            666666543332221     1125677777776 32 11111 012  2578888888887544331           12


Q ss_pred             CCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415          422 FRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       422 l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                      .++|+.|+|++| .+..+|. +.  ++|+.|++++|. +..++..         ++.....+|++..|.+.+-
T Consensus       366 p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~s---------l~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        366 PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN-LVRLPES---------LPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC-cccCchh---------HHHHhhcCCCccEEEeeCC
Confidence            357888888886 4556654 32  367888887764 3333320         1112234566777777653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.33  E-value=1e-13  Score=145.43  Aligned_cols=106  Identities=21%  Similarity=0.254  Sum_probs=91.0

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      .++++|....|.+..+.......+|++++++.+.+..+| ++++.+.+|..|+..+| .+..+|..       +...++|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~r-------i~~~~~L  289 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLR-------ISRITSL  289 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHH-------HhhhhhH
Confidence            577888888887776655567789999999999999999 66999999999999999 88776654       5888999


Q ss_pred             cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++|.+.+| .++.+|+. .+++++|++|++..+.+..
T Consensus       290 ~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  290 VSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             HHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccc
Confidence            99999999 89999986 7889999999999887765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.32  E-value=2.7e-14  Score=120.92  Aligned_cols=164  Identities=20%  Similarity=0.272  Sum_probs=117.9

Q ss_pred             cccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC
Q 008415          211 IRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS  290 (566)
Q Consensus       211 ~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~  290 (566)
                      +.+++....+.+...|.++.|++..+|+. +..+++|++|++++| .|+++|.+       |..|++|++|+++-| ++.
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~-------issl~klr~lnvgmn-rl~   92 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTS-------ISSLPKLRILNVGMN-RLN   92 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChh-------hhhchhhhheecchh-hhh
Confidence            34566677788899999999999999999 899999999999999 99776655       599999999999999 899


Q ss_pred             ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEE
Q 008415          291 IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSV  370 (566)
Q Consensus       291 ~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L  370 (566)
                      .+|.+ +|.++-|+.|++..+...+.             ..+..+-.++.|+.|.+..+   .++-++.....+++|+.|
T Consensus        93 ~lprg-fgs~p~levldltynnl~e~-------------~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen   93 ILPRG-FGSFPALEVLDLTYNNLNEN-------------SLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQIL  155 (264)
T ss_pred             cCccc-cCCCchhhhhhccccccccc-------------cCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEE
Confidence            99998 99999999999999887652             45555666677777777643   334444444444555555


Q ss_pred             EEecccCCCCCeeee-ccccccCcceEEEeccccce
Q 008415          371 LVKSGVHTSPPFNVL-HLAYMENLQKFELESCNLEE  405 (566)
Q Consensus       371 ~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~  405 (566)
                      .+.. .   .-+.++ .++.+..|+.|+|.|+.+..
T Consensus       156 ~lrd-n---dll~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  156 SLRD-N---DLLSLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             eecc-C---chhhCcHHHHHHHHHHHHhcccceeee
Confidence            5544 1   111122 24445555555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.21  E-value=1.5e-12  Score=124.40  Aligned_cols=127  Identities=26%  Similarity=0.312  Sum_probs=102.7

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCC-CC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRI-NI  256 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~-~~  256 (566)
                      ..+.+.+.++.++|..- ......|.+..|.|+.+|  .+..+++||.|+++.|.|+.+.+..|.+++.|-.|-+.+ | 
T Consensus        49 ~~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N-  126 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN-  126 (498)
T ss_pred             ceEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC-
Confidence            44556667777776422 256777889999999988  468899999999999999988777799998888777766 6 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      +|+++|...      ++.|..|+.|.+.-| .+..++.+++..|++|..|.+..+.+..
T Consensus       127 kI~~l~k~~------F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~  178 (498)
T KOG4237|consen  127 KITDLPKGA------FGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS  178 (498)
T ss_pred             chhhhhhhH------hhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence            999999877      888999999999888 7888888878889999988888876643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=8e-11  Score=104.45  Aligned_cols=134  Identities=23%  Similarity=0.301  Sum_probs=53.1

Q ss_pred             CCccccccccEEEeecCCcccccCCC-CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcc
Q 008415          193 PKFEEWEGAKRVSLMGNGIRSLSEIP-TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE  271 (566)
Q Consensus       193 ~~~~~~~~lr~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~  271 (566)
                      +...+..+.|.|++.++.+..+.... .+.+|++|++++|.+..++.  +..++.|+.|++++| .|+++++.+      
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l------   83 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGL------   83 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHH------
T ss_pred             cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccch------
Confidence            33444457888999999998887765 57899999999999888864  778999999999999 888775433      


Q ss_pred             hhccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          272 LKALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       272 i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      ...+++|++|++++| +|..+.. ..+..+++|++|++.+|++...           ......-+..+++|+.|+-.
T Consensus        84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----------~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-----------KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-----------TTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-----------hhHHHHHHHHcChhheeCCE
Confidence            246889999999998 7776543 1267889999999998887541           23344456677778777655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.97  E-value=1.1e-10  Score=116.83  Aligned_cols=90  Identities=24%  Similarity=0.323  Sum_probs=43.2

Q ss_pred             CCCccEEEecCCccc-----ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC-ccc
Q 008415          220 CPRLVTLLLGGNRIE-----EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS-IIP  293 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~-----~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~-~lP  293 (566)
                      +.+|+.|.+.++.+.     .++.. +...+.|+.|+++++ .+...|..+..++..+.++++|++|++++| .+. ..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~   98 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGC   98 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHH
Confidence            344555666555442     23322 444555666666655 444333333333444555556666666665 333 222


Q ss_pred             hhhhcCCCC---CcEEEecCCCC
Q 008415          294 HQLISGFSK---LEVLRLFGCGF  313 (566)
Q Consensus       294 ~~~i~~L~~---L~~L~l~~~~~  313 (566)
                      .. +..+.+   |++|++++|..
T Consensus        99 ~~-~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          99 GV-LESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             HH-HHHHhccCcccEEEeeCCcc
Confidence            22 333333   66666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.96  E-value=1.1e-10  Score=114.97  Aligned_cols=115  Identities=22%  Similarity=0.280  Sum_probs=82.4

Q ss_pred             eecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHH--HhccccccCcchhhHHHHHHH
Q 008415            6 STFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIE--EQRPRTRRTNQVAGWLEDVQK   80 (566)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la--~~~g~l~~~~~~~~W~~~~~~   80 (566)
                      .+.+..--.+++|++|.+.++... ..        ..+.+.+.+++|+++|   |+|  ++|+.++.+.+.++|+++++.
T Consensus       151 ~~~l~~L~~~ea~~L~~~~~~~~~-~~--------~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~  221 (287)
T PF00931_consen  151 VIELEPLSEEEALELFKKRAGRKE-SE--------SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEE  221 (287)
T ss_dssp             EEECSS--HHHHHHHHHHHHTSHS-------------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHH
T ss_pred             cccccccccccccccccccccccc-cc--------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444555445789999998886533 00        1123355666677776   877  456777666689999999888


Q ss_pred             HHHhh-------------HHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccc
Q 008415           81 LETEY-------------TELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFD  134 (566)
Q Consensus        81 l~~~~-------------~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~  134 (566)
                      +....             ...+|+.||+++|+|| +||    |+||+   |+++.|+++|+|+|||...+
T Consensus       222 l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f-~~L----~~f~~~~~i~~~~li~lW~~e~~i~~~~  286 (287)
T PF00931_consen  222 LENSLRESRDYDRSVFSALELSYDSLPDELRRCF-LYL----SIFPEGVPIPRERLIRLWVAEGFISSKH  286 (287)
T ss_dssp             HHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHH-HHG----GGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred             ccccccccccccccccccceechhcCCccHHHHH-hhC----cCCCCCceECHHHHHHHHHHCCCCcccC
Confidence            76633             3467788999999999 999    99998   99999999999999998754

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.88  E-value=2.4e-10  Score=109.62  Aligned_cols=123  Identities=23%  Similarity=0.354  Sum_probs=103.5

Q ss_pred             EEecCCccccCCC--ccccccccEEEeecCCccccc--CCCCCCCccEEEecC-CcccccchHHHhcCccCCEEecCCCC
Q 008415          182 LVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGG-NRIEEITDGFFQSMSTLRVLSLRINI  256 (566)
Q Consensus       182 ~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~-~~l~~lp~~~~~~l~~Lr~L~L~~~~  256 (566)
                      +....+.++.+|.  ++.+.++|+|+++.|.|..+.  .+..++.|-+|.+.+ |+|+++|...|+++..|+-|.+.-| 
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-  150 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-  150 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-
Confidence            3444556666664  556789999999999999875  568888888887777 7999999999999999999999999 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCC
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG  312 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~  312 (566)
                      .+..++...      +..|++|..|.+.+| .++.++.+.+..+..++++.+..+.
T Consensus       151 ~i~Cir~~a------l~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  151 HINCIRQDA------LRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhcchhHHH------HHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence            888777654      889999999999999 8999999779999999999887665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=3.4e-09  Score=94.11  Aligned_cols=125  Identities=27%  Similarity=0.332  Sum_probs=60.3

Q ss_pred             EEecCCccccCCCcc-ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415          182 LVHAGVELTEAPKFE-EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK  260 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~-~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~  260 (566)
                      +...+..+..+.... .+.+++.|++++|.+..++.+..+++|++|++++|.+.++++.+...+++|+.|++++| .|..
T Consensus        24 L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~  102 (175)
T PF14580_consen   24 LNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISD  102 (175)
T ss_dssp             ------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----S
T ss_pred             ccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCC
Confidence            444555555555554 35789999999999999999999999999999999999997764467999999999999 8887


Q ss_pred             ccccccccCcchhccccCcEecccCcccCCccch---hhhcCCCCCcEEEecCCCC
Q 008415          261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~~~~~  313 (566)
                      +-+-     ..+..+++|++|++.+| .+..-+.   -+|..+++|+.||-.....
T Consensus       103 l~~l-----~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen  103 LNEL-----EPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             CCCC-----GGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             hHHh-----HHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEccH
Confidence            6431     34678999999999999 5666553   4578899999999865443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.86  E-value=1.2e-09  Score=109.21  Aligned_cols=182  Identities=20%  Similarity=0.134  Sum_probs=106.8

Q ss_pred             ccccEEEeecCCccc-----cc-CCCCCCCccEEEecCCcccc-------cchHHHhcCccCCEEecCCCCCCccccccc
Q 008415          199 EGAKRVSLMGNGIRS-----LS-EIPTCPRLVTLLLGGNRIEE-------ITDGFFQSMSTLRVLSLRINISLRKLPSGI  265 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~-----l~-~~~~~~~Lr~L~l~~~~l~~-------lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i  265 (566)
                      ..++.+.+.++.+..     ++ .....++++.|.++++.+..       ++. .+..+++|++|++++| .+....   
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-~~~~~~---   97 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDN-ALGPDG---   97 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCC-CCChhH---
Confidence            458888888877633     22 23566779999998876542       223 3677889999999999 775321   


Q ss_pred             cccCcchhccc---cCcEecccCcccCCc-----cchhhhcCC-CCCcEEEecCCCCcccccccccccccCccchHhhhc
Q 008415          266 RGLPQELKALE---KLRYLNLDYTRFLSI-----IPHQLISGF-SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELL  336 (566)
Q Consensus       266 ~~LP~~i~~L~---~L~~L~L~~~~~l~~-----lP~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (566)
                         +..+..+.   +|++|++++| .+..     +... +..+ ++|++|++.+|.+...          ........+.
T Consensus        98 ---~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~  162 (319)
T cd00116          98 ---CGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA----------SCEALAKALR  162 (319)
T ss_pred             ---HHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch----------HHHHHHHHHH
Confidence               22234444   4999999998 5652     3333 5667 8999999999987631          0112344566


Q ss_pred             CCCCCceEEEEEcCccc--hhccccCCcccccceEEEEecccCCCCCeee----eccccccCcceEEEeccc
Q 008415          337 GSKHLNVLSWTFRSSLG--VQNFLKYPKLVSITQSVLVKSGVHTSPPFNV----LHLAYMENLQKFELESCN  402 (566)
Q Consensus       337 ~L~~L~~L~i~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~  402 (566)
                      .+++|+.|++..+....  ...+........+|+.|++++ +. ......    ..+..+++|+.|++++|.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-NG-LTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-Cc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            77788888887654321  111111111124566666655 32 111100    123344556666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4.8e-09  Score=102.15  Aligned_cols=68  Identities=22%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             cccccCcceEEEeccccceeee-cccccccccCccCCCcccEEecccCcC--CCCCchhhccCCcceEeEeccc
Q 008415          387 LAYMENLQKFELESCNLEEMKI-DSTEEVKKLFQSGFRSLNTVSVHYCRK--AKDLTWLVFVQNLKVLRIGDCY  457 (566)
Q Consensus       387 l~~~~~L~~L~l~~~~l~~l~~-~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~l~~l~~l~~L~~L~L~~~~  457 (566)
                      ...++.|..|+++.|.+..+.. +..   .......|++|++|.+...+-  +..+..+..+++|+.|.+..++
T Consensus       267 ~~~l~~L~~Lnls~tgi~si~~~d~~---s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTGIASIAEPDVE---SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             cccccchhhhhccccCcchhcCCCcc---chhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            4556677777776666332211 000   001124567777777766432  3333335556666766665443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.65  E-value=1.9e-08  Score=73.26  Aligned_cols=58  Identities=33%  Similarity=0.547  Sum_probs=28.1

Q ss_pred             CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCc
Q 008415          222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYT  286 (566)
Q Consensus       222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~  286 (566)
                      +|++|++++|++..+|...|.++++|++|++++| .++.+|+..      +..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~------f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDA------FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTT------TTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHH------HcCCCCCCEEeCcCC
Confidence            4455555555555555444455555555555555 444444322      444444555544444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2.4e-08  Score=72.67  Aligned_cols=61  Identities=28%  Similarity=0.400  Sum_probs=55.5

Q ss_pred             ccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          245 STLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       245 ~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      ++|++|++++| .++.+|...      +..+++|++|++++| .++.+|.+++..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~------f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDS------FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTT------TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHH------HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            47999999999 999998765      899999999999999 89999988799999999999998863

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.60  E-value=1.3e-09  Score=105.42  Aligned_cols=292  Identities=21%  Similarity=0.204  Sum_probs=160.1

Q ss_pred             ccccEEEeecCCcccccC----CCCCCCccEEEecCCc-ccc-cchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          199 EGAKRVSLMGNGIRSLSE----IPTCPRLVTLLLGGNR-IEE-ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~----~~~~~~Lr~L~l~~~~-l~~-lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      ..+|.+++.+..-.....    ...++++..|.+.++. +++ .-.++-..+++|++|+|..|..++...     |-.-.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~-----Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS-----LKYLA  212 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH-----HHHHH
Confidence            356667776654332221    2667888888887773 332 112223567888888888875665421     11113


Q ss_pred             hccccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          273 KALEKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      ..+++|++|+++.|..++.  +-.- ..++.+++.+...||....            .......=+....+-++++..+.
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~~~~~kGC~e~~------------le~l~~~~~~~~~i~~lnl~~c~  279 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQAL-QRGCKELEKLSLKGCLELE------------LEALLKAAAYCLEILKLNLQHCN  279 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHH-hccchhhhhhhhccccccc------------HHHHHHHhccChHhhccchhhhc
Confidence            4567888888888865554  1111 3456667777777765543            11111111111222233322222


Q ss_pred             ccchhccccCCcccccceEEEEecccCCCCCeeeecc-ccccCcceEEEeccc-cceeeecccccccccCccCCCcccEE
Q 008415          351 SLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHL-AYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTV  428 (566)
Q Consensus       351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L  428 (566)
                      ..+.+.+...-.....|+.|..++ |.+..+..+..+ .+.++|+.|.+.+|. +........       ..+.+.|+.+
T Consensus       280 ~lTD~~~~~i~~~c~~lq~l~~s~-~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le~l  351 (483)
T KOG4341|consen  280 QLTDEDLWLIACGCHALQVLCYSS-CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLERL  351 (483)
T ss_pred             cccchHHHHHhhhhhHhhhhcccC-CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhhhh
Confidence            111122211222234567777777 665444444443 355788888888887 554332211       1245778888


Q ss_pred             ecccCcCCCCC--ch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCC-CCC
Q 008415          429 SVHYCRKAKDL--TW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYP-NPL  504 (566)
Q Consensus       429 ~L~~c~~l~~l--~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~-~~~  504 (566)
                      .+.+|....+-  .. -...|.|+.|.++.|+.+++.....        +.....+...|+.|.|++||.+++-.. ...
T Consensus       352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~--------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH--------LSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh--------hhhccccccccceeeecCCCCchHHHHHHHh
Confidence            88887555443  12 3347888888888887766432100        112334566788888888887654221 223


Q ss_pred             CCCCccEEeecCCCCCCCCC
Q 008415          505 PFPKLKKIDVCHCPQLKKLP  524 (566)
Q Consensus       505 ~~p~L~~L~i~~C~~L~~lP  524 (566)
                      ..++|+.+++.+|....+=|
T Consensus       424 ~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  424 ICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             hCcccceeeeechhhhhhhh
Confidence            46788888888887776544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.59  E-value=1.5e-09  Score=104.99  Aligned_cols=286  Identities=19%  Similarity=0.195  Sum_probs=172.4

Q ss_pred             CCccEEEecCCcc---cccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchh-h
Q 008415          221 PRLVTLLLGGNRI---EEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ-L  296 (566)
Q Consensus       221 ~~Lr~L~l~~~~l---~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~-~  296 (566)
                      ..||.|.+.|+.-   ..+ ..+-.+++++..|++.+|..++.     ..+-.--..+.+|++|++..|..++...-. .
T Consensus       138 g~lk~LSlrG~r~v~~ssl-rt~~~~CpnIehL~l~gc~~iTd-----~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSL-RTFASNCPNIEHLALYGCKKITD-----SSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             cccccccccccccCCcchh-hHHhhhCCchhhhhhhcceeccH-----HHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            4688888888832   122 22356788899999998855543     111112356788999999998777764321 2


Q ss_pred             hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEeccc
Q 008415          297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGV  376 (566)
Q Consensus       297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  376 (566)
                      ...+++|++|+++.|....            ....-.-.....+++.+...++.....+.+........-+..+++.. |
T Consensus       212 a~gC~kL~~lNlSwc~qi~------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~-c  278 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQIS------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH-C  278 (483)
T ss_pred             HHhhhhHHHhhhccCchhh------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh-h
Confidence            4568899999999887654            11122223444556666555554444444433322223344555555 6


Q ss_pred             CCCCCeeeecc-ccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC--chh-hccCCcceE
Q 008415          377 HTSPPFNVLHL-AYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL--TWL-VFVQNLKVL  451 (566)
Q Consensus       377 ~~~~~~~~~~l-~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l-~~l~~L~~L  451 (566)
                      ....+.+.-.+ .....|+.|..++|. +...++..+       ....++|+.|.+++|..+.+.  ..+ .+.+.|+.+
T Consensus       279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l  351 (483)
T KOG4341|consen  279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL-------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL  351 (483)
T ss_pred             ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH-------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence            44444332222 245678889888887 544332211       134588999999999887764  223 347888999


Q ss_pred             eEecccCcccccccccccccccccCCCCccccccceeecccccccccc-----CCCCCCCCCccEEeecCCCCCCCCCCC
Q 008415          452 RIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-----YPNPLPFPKLKKIDVCHCPQLKKLPLN  526 (566)
Q Consensus       452 ~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-----~~~~~~~p~L~~L~i~~C~~L~~lP~~  526 (566)
                      ++.+|.....--           +..-..++|.|+.|.|+.|...+.-     .....++..|+.+.+.+||.++.--..
T Consensus       352 ~~e~~~~~~d~t-----------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  352 DLEECGLITDGT-----------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             cccccceehhhh-----------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            888887654320           1123457889999999988766543     222345778899999999887652221


Q ss_pred             Cc---cccCCcEEEechhhh
Q 008415          527 SS---SAKERRVVIEGEKKW  543 (566)
Q Consensus       527 ~~---~~l~~L~i~~~~~~~  543 (566)
                      ..   +.++.+..++|..-.
T Consensus       421 ~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  421 HLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             HHhhCcccceeeeechhhhh
Confidence            11   125666667776443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.53  E-value=1e-08  Score=95.08  Aligned_cols=130  Identities=21%  Similarity=0.250  Sum_probs=101.2

Q ss_pred             ccccccccEEEeecCCcccccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      ...|+.++.+++++|.++.+.++ .-.|.+|.|+++.|.+..+..  +..+.+|..|||++| .+.++-..       -.
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gw-------h~  349 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGW-------HL  349 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhh-------Hh
Confidence            34577888899999988888765 446889999999998877654  678889999999998 77665432       25


Q ss_pred             ccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       274 ~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      +|-|.++|.+++| .+..+..  +++|.+|..|++++|++..             ......+++|+-|+.+.+.++.
T Consensus       350 KLGNIKtL~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~-------------ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  350 KLGNIKTLKLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEE-------------LDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhcCEeeeehhhh-hHhhhhh--hHhhhhheeccccccchhh-------------HHHhcccccccHHHHHhhcCCC
Confidence            6778889999998 7888877  8899999999999888754             2456678888888887777543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.2e-09  Score=99.35  Aligned_cols=159  Identities=18%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             CcEecccCcccCCccc-hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415          278 LRYLNLDYTRFLSIIP-HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN  356 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~  356 (566)
                      |++|||+.. .++.=. .++++.+.+|+.|.+.|.....              .....++.=.+|+.|+++.+++-.-.+
T Consensus       187 lq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD--------------~I~~~iAkN~~L~~lnlsm~sG~t~n~  251 (419)
T KOG2120|consen  187 LQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDD--------------PIVNTIAKNSNLVRLNLSMCSGFTENA  251 (419)
T ss_pred             hHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCc--------------HHHHHHhccccceeeccccccccchhH
Confidence            555555554 333210 1224555566666666555533              344455555556666665443222111


Q ss_pred             cccCCcccccceEEEEecccCCCCCeeeeccc-cccCcceEEEeccc--cceeeecccccccccCccCCCcccEEecccC
Q 008415          357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLA-YMENLQKFELESCN--LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC  433 (566)
Q Consensus       357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~--l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c  433 (566)
                      +.-....++.|..|.++| |..........+. --++|..|+++||.  +..-.++..       ....++|..|+|++|
T Consensus       252 ~~ll~~scs~L~~LNlsW-c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-------~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSW-CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-------VRRCPNLVHLDLSDS  323 (419)
T ss_pred             HHHHHHhhhhHhhcCchH-hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-------HHhCCceeeeccccc
Confidence            111112234555555555 5322221101111 11466666666665  221010000       023466666666666


Q ss_pred             cCCCC--CchhhccCCcceEeEecccCc
Q 008415          434 RKAKD--LTWLVFVQNLKVLRIGDCYDM  459 (566)
Q Consensus       434 ~~l~~--l~~l~~l~~L~~L~L~~~~~l  459 (566)
                      ..+++  +..+.+++.|++|.++.|+.+
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCC
Confidence            65554  122455666666666666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.6e-08  Score=97.18  Aligned_cols=185  Identities=19%  Similarity=0.159  Sum_probs=97.9

Q ss_pred             CCCCCccEEEecCCcccccch-HHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-h
Q 008415          218 PTCPRLVTLLLGGNRIEEITD-GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-Q  295 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~-~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~  295 (566)
                      .++..||...+.++.+...+. +....|+++|.|||++| -+...-.    +-+-+.+|++|+.|+++.| .+...-. .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~----v~~i~eqLp~Le~LNls~N-rl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFP----VLKIAEQLPSLENLNLSSN-RLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHH----HHHHHHhcccchhcccccc-cccCCcccc
Confidence            556677777777776554442 23566777777777776 4433211    1112356667777777766 3433211 1


Q ss_pred             hhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecc
Q 008415          296 LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSG  375 (566)
Q Consensus       296 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (566)
                      .-..+++|+.|.+++|+..+.             ....-+...++|+.|.+..+.                         
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k-------------~V~~~~~~fPsl~~L~L~~N~-------------------------  233 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWK-------------DVQWILLTFPSLEVLYLEANE-------------------------  233 (505)
T ss_pred             chhhhhhhheEEeccCCCCHH-------------HHHHHHHhCCcHHHhhhhccc-------------------------
Confidence            123456666666666666541             122223334444444444221                         


Q ss_pred             cCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC--ch------hhccC
Q 008415          376 VHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL--TW------LVFVQ  446 (566)
Q Consensus       376 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~------l~~l~  446 (566)
                         .......+...+..|+.|+|+++. +.+-        .....+.|+.|+.|+++.| .+.++  |.      ...+|
T Consensus       234 ---~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  234 ---IILIKATSTKILQTLQELDLSNNNLIDFD--------QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             ---ccceecchhhhhhHHhhccccCCcccccc--------cccccccccchhhhhcccc-CcchhcCCCccchhhhcccc
Confidence               000011123345677888888877 4431        1233357788888888775 33332  22      24578


Q ss_pred             CcceEeEecccC
Q 008415          447 NLKVLRIGDCYD  458 (566)
Q Consensus       447 ~L~~L~L~~~~~  458 (566)
                      +|++|.+..++-
T Consensus       302 kL~~L~i~~N~I  313 (505)
T KOG3207|consen  302 KLEYLNISENNI  313 (505)
T ss_pred             cceeeecccCcc
Confidence            888888877654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.47  E-value=4.8e-09  Score=105.36  Aligned_cols=171  Identities=21%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             cccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          200 GAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      .....+++.|.+.++|. ...|..|..+.+..|.+..+|.. ++++..|.||||+.| .+..+|..+       +.|+ |
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~l-------C~lp-L  145 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGL-------CDLP-L  145 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhh-------hcCc-c
Confidence            44556677777777763 35566788888888888888877 788888888888888 887766554       4443 6


Q ss_pred             cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc
Q 008415          279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL  358 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~  358 (566)
                      +.|-+++| +++.+|.+ |+.+..|..|+.+.|.+..               .+..++.|..|+.|.+..+....+   +
T Consensus       146 kvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s---------------lpsql~~l~slr~l~vrRn~l~~l---p  205 (722)
T KOG0532|consen  146 KVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS---------------LPSQLGYLTSLRDLNVRRNHLEDL---P  205 (722)
T ss_pred             eeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh---------------chHHhhhHHHHHHHHHhhhhhhhC---C
Confidence            66666666 66666666 6666666666666665543               555666666666666654322222   2


Q ss_pred             cCCcccccceEEEEecccCCCCCeeee-ccccccCcceEEEeccccce
Q 008415          359 KYPKLVSITQSVLVKSGVHTSPPFNVL-HLAYMENLQKFELESCNLEE  405 (566)
Q Consensus       359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~  405 (566)
                      ..... -.|..|+++  |+.  -..++ .+..|+.|+.|-+.+|.+..
T Consensus       206 ~El~~-LpLi~lDfS--cNk--is~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  206 EELCS-LPLIRLDFS--CNK--ISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHhC-Cceeeeecc--cCc--eeecchhhhhhhhheeeeeccCCCCC
Confidence            11110 134445555  321  11122 35667777777777766554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.44  E-value=1.8e-07  Score=96.55  Aligned_cols=101  Identities=29%  Similarity=0.367  Sum_probs=45.6

Q ss_pred             cccEEEeecCCcccccCCCCCC--CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCP--RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      .++.+.+.++.+..++......  +|+.|+++++++..+|.. ++.++.|+.|++++| .+..+|..       .+.+.+
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~-------~~~~~~  187 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKL-------LSNLSN  187 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhh-------hhhhhh
Confidence            3444444444444444333222  455555555544444332 444555555555554 44443332       134444


Q ss_pred             CcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415          278 LRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC  311 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~  311 (566)
                      |+.|+++++ .+..+|.. ++.+..|++|.+.++
T Consensus       188 L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         188 LNNLDLSGN-KISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             hhheeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence            555555554 44444443 334444555544444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.38  E-value=3.5e-07  Score=94.35  Aligned_cols=101  Identities=31%  Similarity=0.400  Sum_probs=65.8

Q ss_pred             EEeecCCc-ccccCCCCCCCccEEEecCCcccccchHHHhcCc-cCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          204 VSLMGNGI-RSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMS-TLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       204 Lsl~~~~~-~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~-~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      +....+.+ .........+.+..|++.++.+.+++.. .+.+. +|+.|+++++ .+..+|.       .++.+++|+.|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~-------~~~~l~~L~~L  168 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPS-------PLRNLPNLKNL  168 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhh-------hhhcccccccc
Confidence            44444444 3333344556677777777777777765 55553 7777777777 7765543       25777777777


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++++| .+..+|.. .+.+++|+.|+++++.+..
T Consensus       169 ~l~~N-~l~~l~~~-~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         169 DLSFN-DLSDLPKL-LSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             ccCCc-hhhhhhhh-hhhhhhhhheeccCCcccc
Confidence            77777 67777774 4577777777777776653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.24  E-value=2.2e-07  Score=86.37  Aligned_cols=106  Identities=26%  Similarity=0.365  Sum_probs=92.2

Q ss_pred             cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      ..++|+|.++.|.+..+.....+++|..|++++|.+.++.. +-.++-+.+.|.|++| .|+.+.        ++++|.+
T Consensus       306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N-~iE~LS--------GL~KLYS  375 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN-KIETLS--------GLRKLYS  375 (490)
T ss_pred             ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh-hHhhhh--------hhHhhhh
Confidence            46899999999999999999999999999999997776643 2456889999999999 888765        3789999


Q ss_pred             CcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcc
Q 008415          278 LRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      |.+||+++| +|..+..  + ||+|+.|+++.+.+|++..
T Consensus       376 LvnLDl~~N-~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  376 LVNLDLSSN-QIEELDEVNH-IGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             heecccccc-chhhHHHhcc-cccccHHHHHhhcCCCccc
Confidence            999999999 8888764  4 9999999999999998764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=5e-08  Score=90.59  Aligned_cols=184  Identities=20%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             CCccEEEecCCccc--ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchh-hh
Q 008415          221 PRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ-LI  297 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~-~i  297 (566)
                      ..|+.|++++..++  .+. .+++.+.+|+-|.+.|. .+..      .+-..|.+=.+|+.|+|+.|..+++.... ++
T Consensus       185 sRlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~-~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGL-RLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhHHhhcchhheeHHHHH-HHHHHHHhhhhcccccc-ccCc------HHHHHHhccccceeeccccccccchhHHHHHH
Confidence            34677777776554  222 33666777777777777 5542      11223455567777777777666654432 24


Q ss_pred             cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415          298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH  377 (566)
Q Consensus       298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  377 (566)
                      .+++.|+.|+++.|.....             ..-..+.+.                         ...+..|.+++ |.
T Consensus       257 ~scs~L~~LNlsWc~l~~~-------------~Vtv~V~hi-------------------------se~l~~LNlsG-~r  297 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTE-------------KVTVAVAHI-------------------------SETLTQLNLSG-YR  297 (419)
T ss_pred             HhhhhHhhcCchHhhccch-------------hhhHHHhhh-------------------------chhhhhhhhhh-hH
Confidence            6677777777777765431             011111111                         12344444444 32


Q ss_pred             CC-CCeeeec-cccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCC--CchhhccCCcceEe
Q 008415          378 TS-PPFNVLH-LAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD--LTWLVFVQNLKVLR  452 (566)
Q Consensus       378 ~~-~~~~~~~-l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~  452 (566)
                      .. ....+.. ...+|+|.+|+++.|. ++.-.        ......|+.|++|.++.|..+..  +-.+...|+|.+|+
T Consensus       298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~--------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC--------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hhhhhhHHHHHHHhCCceeeeccccccccCchH--------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence            10 0011111 2456889999998887 55311        12223678999999999976543  23367789999999


Q ss_pred             EecccCc
Q 008415          453 IGDCYDM  459 (566)
Q Consensus       453 L~~~~~l  459 (566)
                      +.+|-.-
T Consensus       370 v~g~vsd  376 (419)
T KOG2120|consen  370 VFGCVSD  376 (419)
T ss_pred             eccccCc
Confidence            9888544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.19  E-value=4.7e-07  Score=91.36  Aligned_cols=113  Identities=24%  Similarity=0.342  Sum_probs=80.8

Q ss_pred             cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccc------------
Q 008415          198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI------------  265 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i------------  265 (566)
                      ...+..++++.|++..+|.-...--|++|.+++|+++.+|+. ++....|..||.+.| .+..+|+.+            
T Consensus       120 L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             hhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence            345566666666666666544445567777777777777766 666667777777777 666666655            


Q ss_pred             ----cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          266 ----RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       266 ----~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                          ..+|..++.| .|..||++.| ++..||-. |.+|+.||+|.+.+|....
T Consensus       198 Rn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  198 RNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCC
Confidence                4566666754 4888999988 89999988 8999999999999888765

>PLN03150 hypothetical protein; Provisional

Probab=98.13  E-value=6.3e-06  Score=89.46  Aligned_cols=84  Identities=24%  Similarity=0.391  Sum_probs=67.2

Q ss_pred             CccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC-ccchhhhcC
Q 008415          222 RLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS-IIPHQLISG  299 (566)
Q Consensus       222 ~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~-~lP~~~i~~  299 (566)
                      .++.|+|+++.+. .+|.. ++.+++|++|+|++| .+.      ..+|..++++++|++|+|++| .+. .+|.. +++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~------g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~  488 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIR------GNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQ  488 (623)
T ss_pred             EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-ccc------CcCChHHhCCCCCCEEECCCC-CCCCCCchH-Hhc
Confidence            4778888888776 56666 888999999999998 775      344555789999999999998 555 67877 899


Q ss_pred             CCCCcEEEecCCCCcc
Q 008415          300 FSKLEVLRLFGCGFWV  315 (566)
Q Consensus       300 L~~L~~L~l~~~~~~~  315 (566)
                      |++|++|++++|....
T Consensus       489 L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        489 LTSLRILNLNGNSLSG  504 (623)
T ss_pred             CCCCCEEECcCCcccc
Confidence            9999999999887754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=5.1e-06  Score=55.38  Aligned_cols=20  Identities=35%  Similarity=0.331  Sum_probs=8.5

Q ss_pred             hccccCcEecccCcccCCccc
Q 008415          273 KALEKLRYLNLDYTRFLSIIP  293 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP  293 (566)
                      ++|++|++|++++| .++.+|
T Consensus        21 ~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen   21 SNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TTCTTSSEEEETSS-CCSBEG
T ss_pred             hCCCCCCEEEecCC-CCCCCc
Confidence            44444444444444 344333

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.02  E-value=6.6e-07  Score=92.61  Aligned_cols=102  Identities=30%  Similarity=0.357  Sum_probs=60.7

Q ss_pred             cccEEEeecCCccc-ccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          200 GAKRVSLMGNGIRS-LSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      .+..+++..|.+.. ......+.+|..|++.+|.+..+... +..+++|++|++++| .|+.+..        +..+..|
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~--------l~~l~~L  142 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG--------LSTLTLL  142 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc--------hhhccch
Confidence            34444455555544 22245566666666666666655543 455666666666666 6665543        4555666


Q ss_pred             cEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +.|++.+| .++.++.  +..+++|+.+++.++.+.
T Consensus       143 ~~L~l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  143 KELNLSGN-LISDISG--LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             hhheeccC-cchhccC--CccchhhhcccCCcchhh
Confidence            66666666 5666665  556666666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=1.5e-06  Score=81.05  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=29.5

Q ss_pred             ccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC---CchhhccCCcceEeEecccCcccc
Q 008415          390 MENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD---LTWLVFVQNLKVLRIGDCYDMEEI  462 (566)
Q Consensus       390 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~---l~~l~~l~~L~~L~L~~~~~l~~i  462 (566)
                      +|++..+.+..|+++....+       -+...++.+--|.|.. +++.+   +..+..+|.|..|.+.+.+..+.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~e-------k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSE-------KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cccchheeeecCcccchhhc-------ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            45566666655553322111       1112344444444433 22332   233555666666666665554433

>PLN03150 hypothetical protein; Provisional

Probab=97.99  E-value=1.6e-05  Score=86.36  Aligned_cols=106  Identities=25%  Similarity=0.401  Sum_probs=84.9

Q ss_pred             cccEEEeecCCccc-cc-CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          200 GAKRVSLMGNGIRS-LS-EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~-l~-~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .++.|.+.++.+.. +| .+..+++|+.|++++|.+. .+|.. ++.+++|++|+|++| .+.      ..+|..+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~ls------g~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFN------GSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCC------CCCchHHhcCC
Confidence            47788888888764 33 4578999999999999887 67777 899999999999999 886      34566679999


Q ss_pred             cCcEecccCcccCCccchhhhcC-CCCCcEEEecCCCCc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISG-FSKLEVLRLFGCGFW  314 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~-L~~L~~L~l~~~~~~  314 (566)
                      +|++|+|++|..-..+|.. ++. +.++..+++.+|...
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCCEEECcCCcccccCChH-HhhccccCceEEecCCccc
Confidence            9999999999444478987 665 457788888877543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=9.7e-06  Score=54.06  Aligned_cols=41  Identities=22%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccc
Q 008415          221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS  263 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~  263 (566)
                      ++|++|++++|++.++|.. +++|++|++|++++| .++++|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCcC
Confidence            5799999999999999987 899999999999999 8887653

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.97  E-value=1.7e-06  Score=93.67  Aligned_cols=59  Identities=27%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      .+++||+.||+++| +++.+..  |++|++||+|.+.+-.+..             ...+.+|-+|++|+.|+|+
T Consensus       170 ~sFpNL~sLDIS~T-nI~nl~G--IS~LknLq~L~mrnLe~e~-------------~~~l~~LF~L~~L~vLDIS  228 (699)
T KOG3665|consen  170 ASFPNLRSLDISGT-NISNLSG--ISRLKNLQVLSMRNLEFES-------------YQDLIDLFNLKKLRVLDIS  228 (699)
T ss_pred             hccCccceeecCCC-CccCcHH--HhccccHHHHhccCCCCCc-------------hhhHHHHhcccCCCeeecc
Confidence            34455555555555 5555522  5555555555555443321             1344455555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.89  E-value=4.5e-06  Score=79.67  Aligned_cols=94  Identities=14%  Similarity=0.084  Sum_probs=54.8

Q ss_pred             ccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC------ch-hhccCCcceEeEeccc
Q 008415          386 HLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL------TW-LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       386 ~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~-l~~l~~L~~L~L~~~~  457 (566)
                      .+..+++|+.|++..|. ...-... .    --..+.+++|+.|++.+|. +++=      .. -...|+|+.|.+.+|.
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~-L----akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVA-L----AKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHH-H----HHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence            46677888888888877 2210000 0    0112456788889888884 3331      11 2337888888888875


Q ss_pred             CcccccccccccccccccCCCCccccccceeeccccc
Q 008415          458 DMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT  494 (566)
Q Consensus       458 ~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~  494 (566)
                      .-..-..         .+......-|.|+.|.|+++.
T Consensus       282 It~da~~---------~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  282 ITRDAAL---------ALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hHHHHHH---------HHHHHHhcchhhHHhcCCccc
Confidence            4332110         011234457888888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=2.7e-06  Score=88.11  Aligned_cols=108  Identities=23%  Similarity=0.362  Sum_probs=93.1

Q ss_pred             ccccccccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      ...+.++..+++..|.++.+.. ...+++|++|++++|.|.++..  +..+..|+.|++++| .|..++.        +.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~--------~~  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG--------LE  159 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC--------Cc
Confidence            4456789999999999999988 8899999999999999998876  788899999999999 9988664        45


Q ss_pred             ccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcc
Q 008415          274 ALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       274 ~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      .+++|+.+++++| .+..+.. . ...+.+|+.+++.++.+..
T Consensus       160 ~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  160 SLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            6899999999999 7888877 2 3789999999999887754

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=3.9e-05  Score=76.77  Aligned_cols=68  Identities=21%  Similarity=0.341  Sum_probs=41.6

Q ss_pred             ccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCchhh
Q 008415          365 SITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLV  443 (566)
Q Consensus       365 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~  443 (566)
                      .++..|+++. |. ...+  +.+  .++|++|.+.+|. +..+|.           ...++|++|.+++|..+..+|   
T Consensus        52 ~~l~~L~Is~-c~-L~sL--P~L--P~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         52 RASGRLYIKD-CD-IESL--PVL--PNELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             cCCCEEEeCC-CC-Cccc--CCC--CCCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCcccccccc---
Confidence            6777888887 52 2222  111  2368888888877 655431           123578888888887666554   


Q ss_pred             ccCCcceEeEe
Q 008415          444 FVQNLKVLRIG  454 (566)
Q Consensus       444 ~l~~L~~L~L~  454 (566)
                        ++|+.|.|.
T Consensus       112 --~sLe~L~L~  120 (426)
T PRK15386        112 --ESVRSLEIK  120 (426)
T ss_pred             --cccceEEeC
Confidence              457777765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.72  E-value=2.7e-06  Score=88.33  Aligned_cols=101  Identities=26%  Similarity=0.399  Sum_probs=63.6

Q ss_pred             CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCC
Q 008415          221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGF  300 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L  300 (566)
                      ..|.+.++++|.+..+..+ +.-++.|+.|||++| .+++..        .+..|++|++|||++| .++.+|.-....+
T Consensus       164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~--------~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc  232 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD--------NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC  232 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH--------HHHhcccccccccccc-hhccccccchhhh
Confidence            3455666666666555554 666777777777777 666533        2566777777777777 6777776112233


Q ss_pred             CCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          301 SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      . |+.|.+++|...                .+.++.+|.+|+.|+++.+
T Consensus       233 ~-L~~L~lrnN~l~----------------tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALT----------------TLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             h-heeeeecccHHH----------------hhhhHHhhhhhhccchhHh
Confidence            3 777777776553                3455666666666666644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.71  E-value=6e-06  Score=78.82  Aligned_cols=258  Identities=17%  Similarity=0.148  Sum_probs=130.6

Q ss_pred             CCCCCCccEEEecCCcccc----cchHHHhcCccCCEEecCCC--C-CCccccccccccCcchhccccCcEecccCcccC
Q 008415          217 IPTCPRLVTLLLGGNRIEE----ITDGFFQSMSTLRVLSLRIN--I-SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFL  289 (566)
Q Consensus       217 ~~~~~~Lr~L~l~~~~l~~----lp~~~~~~l~~Lr~L~L~~~--~-~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l  289 (566)
                      ...+..+..++|+||.+..    .-...+.+.+.||.-+|+.-  . ....+|+.+..|-..+-..++|++|||++| .+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-cc
Confidence            3455566666666664421    11222555667777777643  0 122334333333333444567888888877 33


Q ss_pred             Cc--cc--hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC-CCCCceEEEEEcCccchhccccCCccc
Q 008415          290 SI--IP--HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG-SKHLNVLSWTFRSSLGVQNFLKYPKLV  364 (566)
Q Consensus       290 ~~--lP--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~i~~~~~~~~~~~~~~~~~~  364 (566)
                      ..  ++  .+.|.+++.|++|++.+|++...              .-..++. |..|   ..           .......
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~--------------ag~~l~~al~~l---~~-----------~kk~~~~  156 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPE--------------AGGRLGRALFEL---AV-----------NKKAASK  156 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChh--------------HHHHHHHHHHHH---HH-----------HhccCCC
Confidence            21  22  12367788888888888877541              1111110 0000   00           0001111


Q ss_pred             ccceEEEEecccCCCCCee---e-eccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC--
Q 008415          365 SITQSVLVKSGVHTSPPFN---V-LHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD--  438 (566)
Q Consensus       365 ~~L~~L~l~~~~~~~~~~~---~-~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--  438 (566)
                      ..|+.+..++  ++.....   + ..++.++.|+.+.+..+.+..-.....    .......++|+.|+|.+...-..  
T Consensus       157 ~~Lrv~i~~r--Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al----~eal~~~~~LevLdl~DNtft~egs  230 (382)
T KOG1909|consen  157 PKLRVFICGR--NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL----AEALEHCPHLEVLDLRDNTFTLEGS  230 (382)
T ss_pred             cceEEEEeec--cccccccHHHHHHHHHhccccceEEEecccccCchhHHH----HHHHHhCCcceeeecccchhhhHHH
Confidence            3444444443  1111111   1 135666788888888777321111000    01224678999999988432222  


Q ss_pred             --C-chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc-----cCCCCCCCCCcc
Q 008415          439 --L-TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS-----VYPNPLPFPKLK  510 (566)
Q Consensus       439 --l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~-----l~~~~~~~p~L~  510 (566)
                        + ..+..+|+|++|++.+|-. +.-+...+..       .-...+|+|+.|.+.++. .+.     +.......|.|+
T Consensus       231 ~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~-------al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  231 VALAKALSSWPHLRELNLGDCLL-ENEGAIAFVD-------ALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             HHHHHHhcccchheeeccccccc-ccccHHHHHH-------HHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhH
Confidence              1 1256678899999998843 2221111100       112358999999988764 221     111223478999


Q ss_pred             EEeecCCC
Q 008415          511 KIDVCHCP  518 (566)
Q Consensus       511 ~L~i~~C~  518 (566)
                      .|.+.+|.
T Consensus       302 kLnLngN~  309 (382)
T KOG1909|consen  302 KLNLNGNR  309 (382)
T ss_pred             HhcCCccc
Confidence            99998874

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=7.8e-05  Score=74.69  Aligned_cols=64  Identities=16%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCCCCCccccccc
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI  265 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i  265 (566)
                      .+.++++|+++++.++.+|.+  .++|++|.+.+| .+..+|.. +  ..+|++|++++|..+..+|+++
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPESV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccccc
Confidence            446778888888888777732  246888888876 56667765 2  3578888888875666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.56  E-value=1.5e-06  Score=90.25  Aligned_cols=104  Identities=24%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             cccccEEEeecCCcccccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          198 WEGAKRVSLMGNGIRSLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      |.++..+++.+|.+..+... .-++.|+.|+|+.|++.+..  ++..+++|++|||++| .+..+|.--      ...+.
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~------~~gc~  233 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLS------MVGCK  233 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccc------hhhhh
Confidence            45555566666655544322 33456666666666655543  2566666666666666 665555311      12222


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                       |+.|.+++| .++.+-.  |.+|.+|+.|+++.|-+.
T Consensus       234 -L~~L~lrnN-~l~tL~g--ie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  234 -LQLLNLRNN-ALTTLRG--IENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             -heeeeeccc-HHHhhhh--HHhhhhhhccchhHhhhh
Confidence             666666666 5555554  566666666666555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.48  E-value=0.00014  Score=64.45  Aligned_cols=107  Identities=28%  Similarity=0.350  Sum_probs=69.1

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ....+++.+|++..++.+..+++|.+|.+.+|.|..+.+.+-..+++|..|.|.+| .|.++-+-     ..+..++.|+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl-----~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDL-----DPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhc-----chhccCCccc
Confidence            45567777777777777778888888888888777777664445667888888877 66654321     1134556677


Q ss_pred             EecccCcccCCccch---hhhcCCCCCcEEEecCCCC
Q 008415          280 YLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~~~~~  313 (566)
                      +|.+-+| .++.-+.   -++.++++|++|++.+...
T Consensus       117 ~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  117 YLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeeecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence            7777666 4444332   2356667777777665443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00021  Score=63.41  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-hhhc
Q 008415          220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLIS  298 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~  298 (566)
                      ..+...++|.+|++..++.  |..++.|..|.|++| +|+.+.+.+      -..+++|..|.+.+| +|.++.+ .-+.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L------~~~~p~l~~L~LtnN-si~~l~dl~pLa  110 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDL------DTFLPNLKTLILTNN-SIQELGDLDPLA  110 (233)
T ss_pred             ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccch------hhhccccceEEecCc-chhhhhhcchhc
Confidence            4567789999998887765  788999999999999 999887765      456678999999998 7777654 1167


Q ss_pred             CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          299 GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       299 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      .+++|++|.+-+|.+...           ......-+..+++|+.|+....
T Consensus       111 ~~p~L~~Ltll~Npv~~k-----------~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHK-----------KNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCccceeeecCCchhcc-----------cCceeEEEEecCcceEeehhhh
Confidence            788999999998877542           2233344667788888887743

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.29  E-value=4.5e-05  Score=63.18  Aligned_cols=87  Identities=28%  Similarity=0.379  Sum_probs=68.8

Q ss_pred             ccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      ..+..+++++|.++.+|.  ..+++.+.+|.+.+|.+.++|.. +..++.||.|+++.| .+...|..       |..|.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~v-------i~~L~  123 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRV-------IAPLI  123 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHH-------HHHHH
Confidence            356678888888887764  25677888888888888888888 888899999999888 88666654       46688


Q ss_pred             cCcEecccCcccCCccchh
Q 008415          277 KLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~  295 (566)
                      +|-+|+..++ .+..||-+
T Consensus       124 ~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  124 KLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             hHHHhcCCCC-ccccCcHH
Confidence            8888888888 67777765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.11  E-value=9e-05  Score=78.59  Aligned_cols=117  Identities=24%  Similarity=0.241  Sum_probs=63.7

Q ss_pred             CCCCccEEEecCC-cccccc-hHHHhcCccCCEEecCCC-CCCccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415          219 TCPRLVTLLLGGN-RIEEIT-DGFFQSMSTLRVLSLRIN-ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       219 ~~~~Lr~L~l~~~-~l~~lp-~~~~~~l~~Lr~L~L~~~-~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~  295 (566)
                      .+++|+.|.+.++ .+.... ..+...+++|+.|+++++ ..+...+.   ..+.....+.+|+.|++++|..++..--.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL---LLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh---HhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            3677777777776 333311 223566778888888762 12222121   01112345577888888887445543322


Q ss_pred             hhc-CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          296 LIS-GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       296 ~i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      .+. .+++|++|.+.+|....            +.....-....++|+.|+++.+.
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt------------~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLT------------DEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHhhCCCcceEccCCCCccc------------hhHHHHHHHhcCcccEEeeecCc
Confidence            233 36788888877676321            12233334456667777777554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.09  E-value=6.9e-05  Score=62.10  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             ccEEEeecCCccccc----CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          201 AKRVSLMGNGIRSLS----EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       201 lr~Lsl~~~~~~~l~----~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      ...+.++++.+-.++    ....-.+|...++++|.+.++|..+..+++-+..|+|++| .|..+|..       +..++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-------~Aam~  100 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-------LAAMP  100 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-------HhhhH
Confidence            344555555544333    2356678899999999999999997778889999999999 88776654       58889


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      .|+.|+++.| .+...|.- |..|.+|-.|+..++....
T Consensus       101 aLr~lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  101 ALRSLNLRFN-PLNAEPRV-IAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             HhhhcccccC-ccccchHH-HHHHHhHHHhcCCCCcccc
Confidence            9999999999 78888885 7779999999888776644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.00046  Score=64.83  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             cccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCc
Q 008415          275 LEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~  314 (566)
                      .++++.|||.+| .|..-.+  .++.+|+.|++|+++.|...
T Consensus        70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            356666666666 5554332  12455666666666655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.99  E-value=0.00066  Score=73.93  Aligned_cols=132  Identities=16%  Similarity=0.217  Sum_probs=85.6

Q ss_pred             ccccEEEeecCCcc--ccc--CCCCCCCccEEEecCCccc--ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          199 EGAKRVSLMGNGIR--SLS--EIPTCPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~--~l~--~~~~~~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      .++++|++.+...-  ..+  ....+|.||+|.+.+-.+.  ++. ....++++|+.||+|++ +++.+        .+|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~T-nI~nl--------~GI  191 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGT-NISNL--------SGI  191 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCC-CccCc--------HHH
Confidence            57888888764321  111  2367899999999886442  222 23677899999999999 88876        237


Q ss_pred             hccccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          273 KALEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      ++|+||+.|.+++= .+..-+.  + +-.|++|++||++........    .+    ...-++--..|++||.|++++..
T Consensus       192 S~LknLq~L~mrnL-e~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~----~i----i~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNL-EFESYQDLID-LFNLKKLRVLDISRDKNNDDT----KI----IEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             hccccHHHHhccCC-CCCchhhHHH-HhcccCCCeeeccccccccch----HH----HHHHHHhcccCccccEEecCCcc
Confidence            99999999988776 4443221  3 778999999999876654410    00    00112222357888888888543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.00061  Score=63.09  Aligned_cols=108  Identities=24%  Similarity=0.347  Sum_probs=72.3

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCC--ccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGN--RIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~--~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      .+..+..+++.+..+..+..+..+++|+.|.++.|  .+. .++.- ..++++|++|+|++| .|.. ++++    ....
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~-lstl----~pl~  113 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD-LSTL----RPLK  113 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc-cccc----chhh
Confidence            34567777777777777888888899999999888  333 33332 455689999999998 7664 2222    1246


Q ss_pred             ccccCcEecccCcccCCccc---hhhhcCCCCCcEEEecCCC
Q 008415          274 ALEKLRYLNLDYTRFLSIIP---HQLISGFSKLEVLRLFGCG  312 (566)
Q Consensus       274 ~L~~L~~L~L~~~~~l~~lP---~~~i~~L~~L~~L~l~~~~  312 (566)
                      .+.||..|++.+| ..+.+-   ..++.-+++|..|+-....
T Consensus       114 ~l~nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  114 ELENLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhcchhhhhcccC-CccccccHHHHHHHHhhhhccccccccC
Confidence            7778888888888 444443   2335567777777765543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.00014  Score=67.45  Aligned_cols=80  Identities=23%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-hhhcCC
Q 008415          222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLISGF  300 (566)
Q Consensus       222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L  300 (566)
                      +.+.|.+.||.+..+.  +..+|+.|.+|.|+-| .|+.|.+        +..+++|+.|.|+.| .|..+.. ..+.+|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~p--------l~rCtrLkElYLRkN-~I~sldEL~YLknl   87 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLAP--------LQRCTRLKELYLRKN-CIESLDELEYLKNL   87 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccchh--------HHHHHHHHHHHHHhc-ccccHHHHHHHhcC
Confidence            4445555555554443  2455666666666666 5555433        455566666666666 4555443 114556


Q ss_pred             CCCcEEEecCCCC
Q 008415          301 SKLEVLRLFGCGF  313 (566)
Q Consensus       301 ~~L~~L~l~~~~~  313 (566)
                      ++|++|.+..|..
T Consensus        88 psLr~LWL~ENPC  100 (388)
T KOG2123|consen   88 PSLRTLWLDENPC  100 (388)
T ss_pred             chhhhHhhccCCc
Confidence            6666666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.00016  Score=67.22  Aligned_cols=103  Identities=27%  Similarity=0.322  Sum_probs=82.4

Q ss_pred             cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      +.+++.|.+.++++.++....+++.|++|.|+-|+++.+..  +..|++|+-|.|..| .|.++.+-     .-+.+|++
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL-----~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDEL-----EYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHH-----HHHhcCch
Confidence            35788889999999988878999999999999999988865  789999999999999 88776542     23578899


Q ss_pred             CcEecccCcccCCccch----hhhcCCCCCcEEEe
Q 008415          278 LRYLNLDYTRFLSIIPH----QLISGFSKLEVLRL  308 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~----~~i~~L~~L~~L~l  308 (566)
                      |+.|-|..|.....-+.    .++.-|++|+.|+=
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            99999988765554443    34566888888864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.52  E-value=0.0004  Score=73.63  Aligned_cols=119  Identities=22%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             HhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccC-cccCCccc---hhhhcCCCCCcEEEecCCCCccc
Q 008415          241 FQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDY-TRFLSIIP---HQLISGFSKLEVLRLFGCGFWVV  316 (566)
Q Consensus       241 ~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~-~~~l~~lP---~~~i~~L~~L~~L~l~~~~~~~~  316 (566)
                      ...++.|+.|.+.++..+....     +-......++|+.|++++ |......+   ......+++|+.|++..+.... 
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-  257 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDS-----LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-  257 (482)
T ss_pred             HhhCchhhHhhhcccccCChhh-----HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-
Confidence            3446777777777664444311     111235667777777776 22222222   1113445777777777766321 


Q ss_pred             ccccccccccCccchHhhhcC-CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCC
Q 008415          317 TEEEGNVLCEDAEPLMKELLG-SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT  378 (566)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  378 (566)
                                  ...+..+.. .++|+.|.+..+.......+.......+.|+.|++.+ |..
T Consensus       258 ------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~  307 (482)
T KOG1947|consen  258 ------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG-CHG  307 (482)
T ss_pred             ------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec-Ccc
Confidence                        134444433 4566666644332212222222222234566666665 543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.0039  Score=57.89  Aligned_cols=88  Identities=23%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCC---ccch
Q 008415          218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS---IIPH  294 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~---~lP~  294 (566)
                      ..+..|..|++.+..++.+..  +..|++|++|.++.| ...--    ..++-...++++|++|++++| +++   .+++
T Consensus        40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn-~~~~~----~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p  111 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDN-YRRVS----GGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP  111 (260)
T ss_pred             ccccchhhhhhhccceeeccc--CCCcchhhhhcccCC-ccccc----ccceehhhhCCceeEEeecCC-ccccccccch
Confidence            445566666666665554433  556788888888877 22100    223333466688888888888 554   3444


Q ss_pred             hhhcCCCCCcEEEecCCCCcc
Q 008415          295 QLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       295 ~~i~~L~~L~~L~l~~~~~~~  315 (566)
                        +..+.+|..|++++|....
T Consensus       112 --l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 --LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             --hhhhcchhhhhcccCCccc
Confidence              5667777788888776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0054  Score=33.92  Aligned_cols=17  Identities=41%  Similarity=0.620  Sum_probs=9.0

Q ss_pred             CcEecccCcccCCccchh
Q 008415          278 LRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~~  295 (566)
                      |++||+++| .++.+|.+
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            455555555 45555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.40  E-value=0.035  Score=51.86  Aligned_cols=96  Identities=26%  Similarity=0.277  Sum_probs=54.6

Q ss_pred             CCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCC--C-CCccccccccccCcchhccccCcEecccCcccCC
Q 008415          219 TCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRIN--I-SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS  290 (566)
Q Consensus       219 ~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~--~-~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~  290 (566)
                      .+..+..++++||.+..     +... +.+-++||+-+++.-  . .-..+|+++.-|-..+-++++|+..+|++|..-.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            35566666677664432     2222 455566777766643  0 1123444333333445567788888888873333


Q ss_pred             ccch---hhhcCCCCCcEEEecCCCCcc
Q 008415          291 IIPH---QLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       291 ~lP~---~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ..|+   +.|++-+.|.+|.+.+|+.-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            3443   336777888888888887643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.31  E-value=0.026  Score=28.94  Aligned_cols=9  Identities=56%  Similarity=0.667  Sum_probs=3.5

Q ss_pred             CCEEecCCC
Q 008415          247 LRVLSLRIN  255 (566)
Q Consensus       247 Lr~L~L~~~  255 (566)
                      ||.|++++|
T Consensus         3 L~~L~l~~n   11 (17)
T PF13504_consen    3 LRTLDLSNN   11 (17)
T ss_dssp             -SEEEETSS
T ss_pred             cCEEECCCC
Confidence            444444444

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.19  E-value=0.019  Score=31.71  Aligned_cols=18  Identities=39%  Similarity=0.541  Sum_probs=11.7

Q ss_pred             cCCEEecCCCCCCcccccc
Q 008415          246 TLRVLSLRINISLRKLPSG  264 (566)
Q Consensus       246 ~Lr~L~L~~~~~i~~lp~~  264 (566)
                      +|++||+++| .++.+|++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4677777777 66666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.11  E-value=0.028  Score=28.81  Aligned_cols=17  Identities=35%  Similarity=0.546  Sum_probs=10.5

Q ss_pred             ccCcEecccCcccCCccc
Q 008415          276 EKLRYLNLDYTRFLSIIP  293 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP  293 (566)
                      ++|+.|++++| .++++|
T Consensus         1 ~~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCC-CCCCCc
Confidence            46888888888 588776

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.65  E-value=0.19  Score=42.32  Aligned_cols=81  Identities=16%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415          218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI  297 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i  297 (566)
                      ..+.+|+.+.+.. .+..++...|..+.+|+.+.+.++  +..++...      +.++.+|+.+.+..  .+..++..++
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~------F~~~~~l~~i~~~~--~~~~i~~~~F   77 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNA------FSNCKSLESITFPN--NLKSIGDNAF   77 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTT------TTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceee------eecccccccccccc--cccccccccc
Confidence            3444555555543 244444444555555555555432  33333322      44444555555543  2444444434


Q ss_pred             cCCCCCcEEEec
Q 008415          298 SGFSKLEVLRLF  309 (566)
Q Consensus       298 ~~L~~L~~L~l~  309 (566)
                      ..+++|+.+.+.
T Consensus        78 ~~~~~l~~i~~~   89 (129)
T PF13306_consen   78 SNCTNLKNIDIP   89 (129)
T ss_dssp             TT-TTECEEEET
T ss_pred             cccccccccccC
Confidence            445555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.19  E-value=0.26  Score=41.42  Aligned_cols=99  Identities=13%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          199 EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .+++.+.+.. .+..+.  .+..+.+|+.+.+.++ +..++...|.+++.|+.+.+..  .+..++...      +..+.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~------F~~~~   81 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNA------FSNCT   81 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTT------TTT-T
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccc------ccccc
Confidence            4666666653 455554  3567778999998775 7778877788888899998864  455555443      66788


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecC
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG  310 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~  310 (566)
                      +|+.+++..+  +..++...+.+. +|+.+.+..
T Consensus        82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            8998888654  677877667777 888888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.016  Score=51.69  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=15.6

Q ss_pred             CCcccEEecccCcCCCC--CchhhccCCcceEeEecc
Q 008415          422 FRSLNTVSVHYCRKAKD--LTWLVFVQNLKVLRIGDC  456 (566)
Q Consensus       422 l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~  456 (566)
                      .++|+.|+|++|+.+++  +-++..+++|+.|.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence            34444444444444443  233444444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.20  E-value=0.12  Score=29.77  Aligned_cols=20  Identities=40%  Similarity=0.504  Sum_probs=12.6

Q ss_pred             cccCcEecccCcccCCccchh
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~  295 (566)
                      |++|++|++++| .++.+|.+
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHH
Confidence            345666666666 66666665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.20  E-value=0.12  Score=29.77  Aligned_cols=20  Identities=40%  Similarity=0.504  Sum_probs=12.6

Q ss_pred             cccCcEecccCcccCCccchh
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~  295 (566)
                      |++|++|++++| .++.+|.+
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHH
Confidence            345666666666 66666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.65  E-value=0.21  Score=46.93  Aligned_cols=111  Identities=21%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             cccccEEEeecCCcccc------cCCCCCCCccEEEecCCcc----cccchH------HHhcCccCCEEecCCCCCCc-c
Q 008415          198 WEGAKRVSLMGNGIRSL------SEIPTCPRLVTLLLGGNRI----EEITDG------FFQSMSTLRVLSLRINISLR-K  260 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l------~~~~~~~~Lr~L~l~~~~l----~~lp~~------~~~~l~~Lr~L~L~~~~~i~-~  260 (566)
                      +..+..+.+++|.+.+-      ..+..-.+||+..++.-..    .++++.      .+-+|++|+..+||.| -+. .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence            46778888888877531      1235567788887776411    123322      2567889999999988 554 3


Q ss_pred             ccccccccCcchhccccCcEecccCcccCCccchhhhc-------------CCCCCcEEEecCCCC
Q 008415          261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS-------------GFSKLEVLRLFGCGF  313 (566)
Q Consensus       261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~-------------~L~~L~~L~l~~~~~  313 (566)
                      .|+   .|-.-|.+-++|.+|.+++| .+.-+..+-|+             .-+.|++.....|+.
T Consensus       108 ~~e---~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         108 FPE---ELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cch---HHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            332   22233566688999999998 77665543343             345566666655554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.55  E-value=0.015  Score=53.08  Aligned_cols=86  Identities=20%  Similarity=0.186  Sum_probs=53.7

Q ss_pred             CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415          217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL  296 (566)
Q Consensus       217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~  296 (566)
                      +..+....+|+++.+.+..+... |+.+..|..|+++.+ .+..+|.       +++++..++++++..| +.+..|.+ 
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~-------d~~q~~e~~~~~~~~n-~~~~~p~s-  106 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPK-------DAKQQRETVNAASHKN-NHSQQPKS-  106 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChh-------hHHHHHHHHHHHhhcc-chhhCCcc-
Confidence            34555666666666655555555 566666666777766 6644443       3466666666666666 66666766 


Q ss_pred             hcCCCCCcEEEecCCCC
Q 008415          297 ISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       297 i~~L~~L~~L~l~~~~~  313 (566)
                      .+++++++.++..++..
T Consensus       107 ~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccccCCcchhhhccCcc
Confidence            66677777766666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.56  E-value=0.27  Score=28.26  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=15.5

Q ss_pred             CccCCEEecCCCCCCccccccc
Q 008415          244 MSTLRVLSLRINISLRKLPSGI  265 (566)
Q Consensus       244 l~~Lr~L~L~~~~~i~~lp~~i  265 (566)
                      +++|++|+|++| .++.+|..+
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHH
Confidence            457888888888 887777643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.56  E-value=0.27  Score=28.26  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=15.5

Q ss_pred             CccCCEEecCCCCCCccccccc
Q 008415          244 MSTLRVLSLRINISLRKLPSGI  265 (566)
Q Consensus       244 l~~Lr~L~L~~~~~i~~lp~~i  265 (566)
                      +++|++|+|++| .++.+|..+
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHH
Confidence            457888888888 887777643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.43  E-value=0.081  Score=47.42  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=25.1

Q ss_pred             ccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          390 MENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       390 ~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                      .++|+.|+|++|. +++-..        .....|++|+.|.|.+.+....+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL--------~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGL--------ACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             ccchheeeccCCCeechhHH--------HHHHHhhhhHHHHhcCchhhhch
Confidence            3577777777777 543221        12245677777777776655554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.84  E-value=0.05  Score=49.68  Aligned_cols=84  Identities=17%  Similarity=0.153  Sum_probs=67.9

Q ss_pred             ccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          195 FEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      +..+++++.|+++.|....+. .++.+..|..|+++.+.+..+|.+ ++....++.+++..| +.+.+|       .+.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p-------~s~~  108 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQP-------KSQK  108 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCC-------cccc
Confidence            345578888888888765543 346667888899999999999998 899999999999988 776555       4569


Q ss_pred             ccccCcEecccCcc
Q 008415          274 ALEKLRYLNLDYTR  287 (566)
Q Consensus       274 ~L~~L~~L~L~~~~  287 (566)
                      ++++++++++.++.
T Consensus       109 k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTE  122 (326)
T ss_pred             ccCCcchhhhccCc
Confidence            99999999999984

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.88  E-value=1  Score=25.82  Aligned_cols=17  Identities=24%  Similarity=0.768  Sum_probs=13.0

Q ss_pred             CCCccEEeecCCCCCCC
Q 008415          506 FPKLKKIDVCHCPQLKK  522 (566)
Q Consensus       506 ~p~L~~L~i~~C~~L~~  522 (566)
                      +|+|++|++.+|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            36788888888887763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	566
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		8e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		9e-04

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 223 LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLN 282
           L  L LGGN+++ + +G F  +++L  L+L  N  L+ LP+G+         L +L+ L 
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGV------FDKLTQLKELA 106
Query: 283 LDYTRFLSIIPHQLISGFSKLEVLRLF 309
           L+ T  L  +P  +    ++L+ LRL+
Sbjct: 107 LN-TNQLQSLPDGVFDKLTQLKDLRLY 132

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260
            + ++L GN +  +S +     L  L+L GN+++ + +G F  ++ L+ L L  N  L+ 
Sbjct: 65  VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQS 123
Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           LP G+         L  L YLNL + +  S +P  +    + L  L L
Sbjct: 124 LPDGV------FDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	566
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-04

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             +   +    I+ +  +P  P   TL L    +  I    F ++  +  + + I+++L+
Sbjct: 12  QEEDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 260 KLPSGI-RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312
           +L S     L +       + ++ +  TR L+ I    +     L+ L +F  G
Sbjct: 70  QLESHSFYNLSK-------VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 25/124 (20%)

Query: 212 RSLSEIPT-----CPRLVTLLLGGNRIEEITDG-FFQSMSTLRVLSLRINISLRKLPSGI 265
           R+L+ I        P L  L +    ++   D     S     +L +  N  +  +P   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 266 -RGLPQELKALE-----------------KLRYLNLDYTRFLSIIPHQLISG-FSKLEVL 306
            +GL  E   L+                 KL  + L+  ++L++I      G +S   +L
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 307 RLFG 310
            +  
Sbjct: 211 DVSQ 214

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 18/102 (17%)

Query: 214 LSEIPT------CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-R 266
           ++ IP       C   +TL L  N    +    F   + L  + L  N  L  +      
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG 201

Query: 267 GLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           G+            L++  T  ++ +P     G   L+ L  
Sbjct: 202 GVY------SGPSLLDVSQTS-VTALPS---KGLEHLKELIA 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 200 GAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
            ++R+ L GN I  +       C  L  L L  N +  I    F  ++ L  L L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           LR +             L +L  L+LD    L  +   L  G + L+ L L
Sbjct: 93  LRSVDPAT------FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYL 136

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 214 LSEIPT-----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
           L  +         RL TL L    ++E+  G F+ ++ L+ L L+ N +L+ LP      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDT--- 148

Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
               + L  L +L L   R +S +P +   G   L+ L L  
Sbjct: 149 ---FRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L  N +++L +        L  L L GNRI  + +  F+ + +L  L L  N  +  + 
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVH 193

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                     + L +L  L L     LS +P + ++    L+ LRL  
Sbjct: 194 PHA------FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L   G++ L          L  L L  N ++ + D  F+ +  L  L L  N  +  +P
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVP 169

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                     + L  L  L L   R ++ +         +L  L LF 
Sbjct: 170 ERA------FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 199 EGAKRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
           E     S    G++++   IP       + L GNRI  +    F++   L +L L  N  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-V 67

Query: 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
           L ++ +           L  L  L+L     L  +      G  +L  L L  C
Sbjct: 68  LARIDAAA------FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 61/365 (16%), Positives = 115/365 (31%), Gaps = 48/365 (13%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K + L  N +R L      + P L  L L    I+ I DG +QS+S L  L L  N  ++
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 89

Query: 260 KLPSG-----------------IRGLPQE-LKALEKLRYLNLDYTRFLSIIPHQLISGFS 301
            L  G                 +  L    +  L+ L+ LN+ +    S    +  S  +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 302 KLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ------ 355
            LE L L       +   +  VL +     +   L    +N +       + +       
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 356 NFLKYP-------KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKI 408
           NF            L  +    LV               + +E L    +E   L  +  
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 409 DSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDME-EIISVDK 467
              +++  LF     ++++ S+      + +    +    + L + +C   +   + +  
Sbjct: 270 -YLDDIIDLFN-CLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 468 LR--DISVIIGSEHNFFA---QLEYLSISWGTNLKSVYPNPLPF---PKLKKIDVCHCPQ 519
           L+    +   G           LE+L +S    L               LK +D+     
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLS-RNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 384

Query: 520 LKKLP 524
           +  + 
Sbjct: 385 VITMS 389

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 6e-12
 Identities = 57/326 (17%), Positives = 109/326 (33%), Gaps = 43/326 (13%)

Query: 202 KRVSLMGNGIRSL---SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
           K +++  N I+S            L  L L  N+I+ I     + +  + +L+L +++SL
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTE 318
                 +  +        +L  L L        +    I G + LEV RL    F     
Sbjct: 187 NP----MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF----- 237

Query: 319 EEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT 378
                  E  +    E L +  +      +           +  L +++   LV   +  
Sbjct: 238 -RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 379 SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD 438
              F     +Y    Q  EL +C   +      + +K+L  +  +  N  S         
Sbjct: 297 VKDF-----SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--------- 342

Query: 439 LTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS 498
               V + +L+ L +              L        S+      L+YL +S+   + +
Sbjct: 343 ---EVDLPSLEFLDLSRN----------GLSFKGCCSQSDFG-TTSLKYLDLSF-NGVIT 387

Query: 499 VYPNPLPFPKLKKIDVCHCPQLKKLP 524
           +  N L   +L+ +D  H   LK++ 
Sbjct: 388 MSSNFLGLEQLEHLDFQHS-NLKQMS 412

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITD-GFFQSMSTLRVLSLRINISLR 259
           K + L  NG+ ++ S      +L  L    + ++++++   F S+  L  L +      R
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTR 434

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE 319
              +GI         L  L  L +    F       + +    L  L L  C    ++  
Sbjct: 435 VAFNGI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 204 VSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
              M      +   +P       L L  N +  +    F S   L+VL L     ++ + 
Sbjct: 12  YQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIE 68

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
            G        ++L  L  L L     +  +     SG S L+ L       
Sbjct: 69  DGA------YQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEI--TDGFFQSMSTLRVLSLRINISLR 259
           KR++   N   +       P L  L L  N +             ++L+ L L  N  + 
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVI 386

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            + S   GL Q       L +L+  ++    +    +      L  L +
Sbjct: 387 TMSSNFLGLEQ-------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 202 KRVSLMGNGIRSLSEIPT---CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
           + +    + ++ +SE         L+ L +         +G F  +S+L VL +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--- 455

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                    LP     L  L +L+L   + L  +     +  S L+VL +
Sbjct: 456 -SFQENF--LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNM 501

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 205 SLMGNGIRSL---SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            + GN  +             L  L L   ++E+++   F S+S+L+VL++  N  L+ +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSV 509

Query: 262 PSGIRGLPQELKALEKLRYLNLD 284
           P GI         L  L+ + L 
Sbjct: 510 PDGI------FDRLTSLQKIWLH 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 81/531 (15%), Positives = 157/531 (29%), Gaps = 138/531 (25%)

Query: 30  GLEKNLRVLETELHKLTRARADLKTKVEIEEQRPRTRRTNQVAGWLEDVQKLETEYTELE 89
            L  N + L + +    R  + +       EQR R    NQV     +V +L+  Y +L 
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTR--MYIEQRDRLYNDNQVFAKY-NVSRLQ-PYLKL- 140

Query: 90  RDRAQEMDR---LCLGGL--CSK----NFVSNSEIPKRQLID--YWISEGFVCDFDDGCD 138
           R    E+     + + G+    K      V  S   + ++    +W++       +    
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--- 197

Query: 139 FIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEE- 197
            + ++LQ  L + + +   +                 K   + +      L ++  +E  
Sbjct: 198 -VLEMLQKLLYQIDPNWTSRSDHSSNI----------KLRIHSIQAELRRLLKSKPYENC 246

Query: 198 -------WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNR-----IEEITDGFFQSMS 245
                     AK  +      + L  + T  + VT  L         ++  +        
Sbjct: 247 LLVLLNVQN-AKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-E 302

Query: 246 TLRVLSLRINISLRKLPSGI-RGLPQELKAL-EKLR--------YLNLDYTRFLSII--- 292
              +L   ++   + LP  +    P+ L  + E +R        + +++  +  +II   
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 293 -----PHQLISGFSKLEVLR---------LFGCGFW--VVTEEEGNVLCEDAEPLMKELL 336
                P +    F +L V           L     W  V+  +   V+ +    L K  L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVMVVVNK----LHKYSL 416

Query: 337 GSKHLNVLSWTFRSSL-GVQNFLKYP---------KLVSITQSVLVKSGVHTSPP----- 381
             K           S+  +   LK            +V               PP     
Sbjct: 417 VEKQPK----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 382 -FNVL--HLAYMENLQKFELES---CNLE--EMKIDSTEEVKKLFQSGFRSLNTVSV--- 430
            ++ +  HL  +E+ ++  L      +    E KI           S    LNT+     
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS---ILNTLQQLKF 529

Query: 431 ----------HYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDI 471
                      Y R    +  L F+  +           EE +   K  D+
Sbjct: 530 YKPYICDNDPKYERLVNAI--LDFLPKI-----------EENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 84/473 (17%), Positives = 151/473 (31%), Gaps = 129/473 (27%)

Query: 127 EGFVCDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACTVDKEEQNFLVHAG 186
           + FV +FD  C  + D+ ++ L +EE D  +   D +          + K+E+  +V   
Sbjct: 27  DAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKF 82

Query: 187 VELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMST 246
           VE      + ++       LM      +      P ++T +    R     D   Q  + 
Sbjct: 83  VEEVLRINY-KF-------LM----SPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAK 128

Query: 247 LRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS-----GFS 301
             V  L+  + LR             +AL +LR             P + +      G  
Sbjct: 129 YNVSRLQPYLKLR-------------QALLELR-------------PAKNVLIDGVLGSG 162

Query: 302 K----LEVLR------LFGCG-FWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS 350
           K    L+V              FW+      N  C   E +++ L    +    +WT RS
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL---KN--CNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 351 SLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFN----VL-HLAYMENLQKFELESCNLEE 405
                +       +   Q+ L    +  S P+     VL ++   +    F L SC    
Sbjct: 218 D----HSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SC---- 266

Query: 406 MKIDSTEEVKKLFQSGFRSLNTV--SVHYCRKAKDLTWLVFVQN------LKVLRIGDCY 457
            KI        L  + F+ +     +      + D   +    +      LK L      
Sbjct: 267 -KI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQ 316

Query: 458 DM-EEIISVDKLRDISVIIGSEHNFFAQLEY--------LSISWGTNLKSVYPNPLP--- 505
           D+  E+++ +  R +S+I  S  +  A  +         L+    ++L  + P       
Sbjct: 317 DLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 506 -----FPKLKKIDVCHCPQ--LKKLPLNSSSAKERRVVIEGEK-----KWWEE 546
                FP        H P   L  +  +   +    VV +  K     K  +E
Sbjct: 376 DRLSVFPP----SA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 94/284 (33%)

Query: 325 CEDAEPLMKELLGSKHLN-------------VLSWTFRS--SLGVQNFLK------YPKL 363
           C+D + + K +L  + ++              L WT  S     VQ F++      Y  L
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 364 VSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFR 423
           +S  ++   +  + T          Y+E   +   ++    +  +   +   KL +    
Sbjct: 95  MSPIKTEQRQPSMMTR--------MYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALL 145

Query: 424 SLNT---VSVHY---CRKAKDLTWLVF--VQNLKV----------LRIGDCYDMEEIISV 465
            L     V +       K    TW+      + KV          L + +C   E ++  
Sbjct: 146 ELRPAKNVLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-- 199

Query: 466 DKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL 525
           + L+ +   I  + N+ ++ +                                    + L
Sbjct: 200 EMLQKLLYQI--DPNWTSRSD--------------------------------HSSNIKL 225

Query: 526 NSSSAKERRVVIEGEKKWWEELQ-----WEDQATQNAFSSRCRT 564
              S +     +   K +   L        +    NAF+  C+ 
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKI 268

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 69/328 (21%), Positives = 121/328 (36%), Gaps = 49/328 (14%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + + L    + SL+     T   L  L L  N+I +I D  F  +  L+VL+L  N  L 
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLG 327

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL----FGCGFWV 315
           +L S           L K+ Y++L     ++II  Q      KL+ L L         ++
Sbjct: 328 ELYSSN------FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380

Query: 316 VTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSG 375
            +  +  +       L K  L +  ++ LS     +L +  FL   ++  +   +L ++ 
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIH-LSENRLENLDILYFLL--RVPHLQILILNQNR 437

Query: 376 VHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK 435
             +             +L++  L    L+      TE    +F+ G   L  + +++   
Sbjct: 438 FSSCSGDQTPSE--NPSLEQLFLGENMLQL--AWETELCWDVFE-GLSHLQVLYLNHNY- 491

Query: 436 AKDLTWL---VFV--QNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSI 490
              L  L   VF     L+ L +             +L  +     S ++  A LE L I
Sbjct: 492 ---LNSLPPGVFSHLTALRGLSLNSN----------RLTVL-----SHNDLPANLEILDI 533

Query: 491 SWGTNLKSVYPNPLPFPKLKKIDVCHCP 518
           S    L +   NP  F  L  +D+ H  
Sbjct: 534 S-RNQLLAP--NPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 7e-12
 Identities = 59/326 (18%), Positives = 108/326 (33%), Gaps = 40/326 (12%)

Query: 209 NGIRSLSEIPTC-PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG 267
               +L+++P        LLL  N I  +T   F  +  L++L L    +   +      
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-- 68

Query: 268 LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCED 327
                + L  LR L+L  ++ +  +      G   L  LRL+ CG          VL + 
Sbjct: 69  ----FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGL------SDAVLKDG 117

Query: 328 AEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP--FNVL 385
               +K L     L++     RS     +F K   L SI       + +          L
Sbjct: 118 YFRNLKAL---TRLDLSKNQIRSLYLHPSFGKLNSLKSID---FSSNQIFLVCEHELEPL 171

Query: 386 HLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFV 445
                + L  F L + +L         +    F++    L  + V       D+T   F 
Sbjct: 172 Q---GKTLSFFSLAANSLYSRVSVDWGKCMNPFRN--MVLEILDVSGNGWTVDITGN-FS 225

Query: 446 QNLKVLRIGDCYDMEEIISVDK-LRDISVIIGSEHNFFA-----QLEYLSISWGTNLKSV 499
             +   +         I+       +I      + N FA      + +L +S G  + S+
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDP---DQNTFAGLARSSVRHLDLSHG-FVFSL 281

Query: 500 YPNPLP-FPKLKKIDVCHCPQLKKLP 524
                     LK +++ +  ++ K+ 
Sbjct: 282 NSRVFETLKDLKVLNLAYN-KINKIA 306

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 55/350 (15%), Positives = 113/350 (32%), Gaps = 38/350 (10%)

Query: 205 SLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L    I+++      +   L TL+L GN I+ +  G F  +S+L+ L      +L  L 
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLE 116

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
                    +  L+ L+ LN+ +    S    +  S  + LE L L       +   +  
Sbjct: 117 ------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ------NFLKYP-------KLVSITQS 369
           VL +     +   L    +N +       + +       NF            L  +   
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 370 VLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVS 429
            LV               + +E L    +E   L  +     +++  LF +   ++++ S
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY-YLDDIIDLF-NCLTNVSSFS 288

Query: 430 VHYCRKAKDLTWLVFVQNLKVLRIGDC-------YDMEEIISVDKLRDISVIIGSEHNFF 482
           +      + +    +    + L + +C         ++ +  +    +      SE +  
Sbjct: 289 LVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-L 346

Query: 483 AQLEYLSISWGTNLKSVYPNPLPF---PKLKKIDVCHCPQLKKLPLNSSS 529
             LE+L +S    L               LK +D+     +  +  N   
Sbjct: 347 PSLEFLDLS-RNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 204 VSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
              M      +   +P       L L  N +  +    F S   L+VL L     ++ + 
Sbjct: 12  YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIE 68

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
                     ++L  L  L L      S+      SG S L+ L       
Sbjct: 69  ------DGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRI--EEITDGFFQSMSTLRVLSLRINISLR 259
           KR++   N   +       P L  L L  N +  +          ++L+ L L  N    
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---- 383

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
               G+  +      LE+L +L+  ++    +    +      L  L +
Sbjct: 384 ----GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 202 KRVSLMGNGIRSLSEIPT---CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
           + +    + ++ +SE         L+ L +         +G F  +S+L VL +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--- 455

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                    LP     L  L +L+L   +   + P    +  S L+VL +
Sbjct: 456 -SFQENF--LPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279
              L  L L   ++E+++   F S+S+L+VL++  N +   L           K L  L+
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD------TFPYKCLNSLQ 521

Query: 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            L+      ++    +L    S L  L L
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 205 SLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L    +  L  +   +   L  L +  N    +    ++ +++L+VL   +N  +    
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSK 534

Query: 263 SGIRGLPQELKALEK-LRYLNLDY 285
                  QEL+     L +LNL  
Sbjct: 535 ------KQELQHFPSSLAFLNLTQ 552

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 206 LMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITD-GFFQSMSTLRVLSLRINISLRKLPS 263
           L  NG+ ++S       +L  L    + ++++++   F S+  L  L +      R   +
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 143

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE 319
           GI         L  L  L +    F       + +    L  L L  C    ++  
Sbjct: 144 GI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 206 LMGNGIRSLSEIPT---CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
              + ++ +SE         L+ L +         +G F  +S+L VL +  N       
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
             I         L  L +L+L   + L  +     +  S L+VL +  
Sbjct: 168 PDI------FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 21/129 (16%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-ISLR 259
             +     G+ S+ + IP       L L  N+++ +  G F  ++ L  LSL  N +S +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 260 KLPSG-----------------IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSK 302
              S                  +  +      LE+L +L+  ++    +    +      
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 303 LEVLRLFGC 311
           L  L +   
Sbjct: 128 LIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279
              L  L L   ++E+++   F S+S+L+VL++  N +   L +         K L  L+
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP------YKCLNSLQ 226

Query: 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
            L+      ++    +L    S L  L L  
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L    +  LS     +   L  L +  N    +    ++ +++L+VL   +N  +    
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSK 239

Query: 263 SGI-RGLPQELKAL 275
               +  P  L  L
Sbjct: 240 KQELQHFPSSLAFL 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 53/351 (15%), Positives = 111/351 (31%), Gaps = 45/351 (12%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K + L  N I  +    +  C  L  L+L  +RI  I    F S+ +L  L L  N  L 
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS 87

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE 319
            L S           L  L+YLNL    + ++    L    + L+ LR+           
Sbjct: 88  SLSSSW------FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-------- 133

Query: 320 EGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS 379
                 E        L     L  +      +   Q+      +  +T   L  S     
Sbjct: 134 --ETFSEIRRIDFAGLTSLNELE-IKALSLRNYQSQSLKSIRDIHHLT---LHLSESAFL 187

Query: 380 PPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC------ 433
                  L+ +  L+  +      +   +   E    + +  FR        +       
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 434 RKAKDLTWLVF----VQNLKVLRIGDCYDMEEIISVDKLR---------DISVIIGSEHN 480
           R   +L+ + F    +  L      +   + E+  V+ +           +   + + ++
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 481 FFAQLEYLSISWGTNLKSVYPNPL-PFPKLKKIDVCHCPQLKKLPLNSSSA 530
              +++ +++   + +  V  +       L+ +D+     + +  L +S+ 
Sbjct: 308 LLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSAC 356

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           +R+ +    +            ++  + +  +++  +   F Q + +L  L L  N    
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN---- 344

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-IPHQLISGFSKLEVLRL 308
            +            A   L+ L L      S+    +++     L  L +
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 40/146 (27%)

Query: 202 KRVSLMGNGIRSLSEIP----TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
           + + L  N +RS+ +      T   L +L +  N    + D   Q    +R L+L     
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSST-G 421

Query: 258 LRKLPSG--------------IRGLPQELKALE-------------------KLRYLNLD 284
           +R + +               +      L  L+                    L  + + 
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481

Query: 285 YTRFLSIIPHQLISGFSKLEVLRLFG 310
             + L  +P  +    + L+ + L  
Sbjct: 482 RNQ-LKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 30/54 (55%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN 255
           + + +  N +++L +    P L+ + +  N+++ + DG F  +++L+ + L  N
Sbjct: 454 QELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           +L    I+ +  +     L  L + GN   EI  G F  +S+L+ L +  +  +  +   
Sbjct: 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN 260

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                     L  L  LNL +   LS +PH L +    L  L L  
Sbjct: 261 A------FDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
              + ++LM N I+ +          L  L LG N I +I  G F  +++L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN- 133

Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
            L  +PSG        + L KLR L L     +  IP    +    L  L L   
Sbjct: 134 WLTVIPSGA------FEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 206 LMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           L  N IR +          L TL L  N +  I  G F+ +S LR L LR N  +  +PS
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPS 164

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                      +  L  L+L   + L  I      G   L+ L L  C
Sbjct: 165 YA------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 24/107 (22%), Positives = 31/107 (28%), Gaps = 17/107 (15%)

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-RGLP---------- 269
            +L  L L  N IE I    F  + +L  L L     L  +  G   GL           
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 270 -----QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                  L  L  L  L +        I      G S L+ L +   
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS 252

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
            L  N +   + +   P LV + L  N +E+I    F  M  L  L +  N         
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--------R 283

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           +  L    + +  L+ L+L +   L +   +    F +LE L L
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K V+   + +R L    + +  ++  L L   +IEEI    F    T++ L +  N ++R
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR 106

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            LP  +       + +  L  L L+    LS +P  +     KL  L +
Sbjct: 107 YLPPHV------FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM 148

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 45/325 (13%), Positives = 92/325 (28%), Gaps = 86/325 (26%)

Query: 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           + +    +    E  T      +    + + ++      S   + +L+L     + ++ +
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDT 86

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNV 323
                         ++ L + +   +  +P  +      L VL L           E N 
Sbjct: 87  YA------FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL-----------ERND 128

Query: 324 LCEDAEPLMKELLGS-KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPF 382
           L      L + +  +   L  LS            +    L  I                
Sbjct: 129 LSS----LPRGIFHNTPKLTTLS------------MSNNNLERIEDDT------------ 160

Query: 383 NVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWL 442
                    +LQ  +L S  L  + +           S   SL   +V Y      L+ L
Sbjct: 161 ----FQATTSLQNLQLSSNRLTHVDL-----------SLIPSLFHANVSYNL----LSTL 201

Query: 443 VFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN 502
                ++ L                   I+V+         +L  L +    NL      
Sbjct: 202 AIPIAVEELDASHN-------------SINVV---RGPVNVELTILKLQ-HNNLTDT-AW 243

Query: 503 PLPFPKLKKIDVCHCPQLKKLPLNS 527
            L +P L ++D+ +  +L+K+  + 
Sbjct: 244 LLNYPGLVEVDLSYN-ELEKIMYHP 267

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           +++ +  N IR L        P L  L+L  N +  +  G F +   L  LS+  N +L 
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLE 154

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           ++           +A   L+ L L   R L+ +    +S    L    +
Sbjct: 155 RIEDDT------FQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 17/119 (14%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             + L  N + SL        P+L TL +  N +E I D  FQ+ ++L+ L L  N  L 
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLT 178

Query: 260 KLPSGI-RGLP---------QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +   +   L            L     +  L+  +   ++++   +     +L +L+L
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV---NVELTILKL 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 16/107 (14%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
              ++  N    LS +     +  L    N I  +          L +L L+ N +L   
Sbjct: 189 FHANVSYN---LLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHN-NLTDT 241

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                     L     L  ++L Y   L  I +       +LE L +
Sbjct: 242 AW--------LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYI 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 7e-12
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
            L  N +   + +   P LV + L  N +E+I    F  M  L  L +  N         
Sbjct: 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--------R 289

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           +  L    + +  L+ L+L +   L +   +    F +LE L L
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K V+   + +R L    + +  ++  L L   +IEEI    F    T++ L +  N ++R
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR 112

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            LP  +       + +  L  L L+    LS +P  +     KL  L +
Sbjct: 113 YLPPHV------FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 45/325 (13%), Positives = 92/325 (28%), Gaps = 86/325 (26%)

Query: 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           + +    +    E  T      +    + + ++      S   + +L+L     + ++ +
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDT 92

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNV 323
                         ++ L + +   +  +P  +      L VL L           E N 
Sbjct: 93  YA------FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL-----------ERND 134

Query: 324 LCEDAEPLMKELLGS-KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPF 382
           L      L + +  +   L  LS            +    L  I                
Sbjct: 135 LSS----LPRGIFHNTPKLTTLS------------MSNNNLERIEDDT------------ 166

Query: 383 NVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWL 442
                    +LQ  +L S  L  + +           S   SL   +V Y      L+ L
Sbjct: 167 ----FQATTSLQNLQLSSNRLTHVDL-----------SLIPSLFHANVSYNL----LSTL 207

Query: 443 VFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN 502
                ++ L                   I+V+         +L  L +    NL      
Sbjct: 208 AIPIAVEELDASHNS-------------INVV---RGPVNVELTILKLQ-HNNLTDT-AW 249

Query: 503 PLPFPKLKKIDVCHCPQLKKLPLNS 527
            L +P L ++D+ +  +L+K+  + 
Sbjct: 250 LLNYPGLVEVDLSYN-ELEKIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           +++ +  N IR L        P L  L+L  N +  +  G F +   L  LS+  N +L 
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLE 160

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           ++           +A   L+ L L   R L+ +    +S    L    +
Sbjct: 161 RIEDDT------FQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 16/107 (14%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
              ++  N    LS +     +  L    N I  +          L +L L+ N +L   
Sbjct: 195 FHANVSYN---LLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHN-NLTDT 247

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                     L     L  ++L Y   L  I +       +LE L +
Sbjct: 248 AW--------LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYI 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 17/119 (14%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             + L  N + SL        P+L TL +  N +E I D  FQ+ ++L+ L L  N  L 
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLT 184

Query: 260 KLPSGI-RGLP---------QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +   +   L            L     +  L+  +   ++++   +     +L +L+L
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV---NVELTILKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 23/225 (10%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-ISLR 259
           K + L  N +  +    P   RL  L L  N I  +      ++  L +     +  SLR
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR 363

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE 319
            L                +    +D       I +QL  G    E  + +     +    
Sbjct: 364 ALFR-------------NVARPAVDDADQHCKIDYQLEHGLCCKESDKPY-LDRLLQYIA 409

Query: 320 EGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS 379
             +V+ +      +        +V S +   +      L+  + +    + L       +
Sbjct: 410 LTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLT 469

Query: 380 P-------PFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKL 417
                       LH     NL+++ L    L     +  +    L
Sbjct: 470 NEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHL 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 7e-12
 Identities = 53/347 (15%), Positives = 105/347 (30%), Gaps = 85/347 (24%)

Query: 205 SLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
           +L  N +R L  +      +L +L +G N I ++     Q +  L+VL+L+ N  L +L 
Sbjct: 31  NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLS 89

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
                          L  L+L       I  +        L  L L   G          
Sbjct: 90  DKT------FAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLG--- 139

Query: 323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPF 382
                        +  ++L  L             L   K+ ++    L    +  +   
Sbjct: 140 -----------TQVQLENLQELL------------LSNNKIQALKSEEL---DIFANSSL 173

Query: 383 NVLHLAY-------------MENLQKFELESCNLEEMKIDSTEEVKKLFQS-GFRSLNTV 428
             L L+              +  L    L +  L           +KL       S+  +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL------GPSLTEKLCLELANTSIRNL 227

Query: 429 SVHYCRKAKDLTWL---VFVQ----NLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNF 481
           S+   +    L+      F+     NL +L +                 ++V+      +
Sbjct: 228 SLSNSQ----LSTTSNTTFLGLKWTNLTMLDLSYNN-------------LNVVGNDSFAW 270

Query: 482 FAQLEYLSISWGTNLKSVYPNPL-PFPKLKKIDVCHCPQLKKLPLNS 527
             QLEY  +    N++ ++ + L     ++ +++      + + L S
Sbjct: 271 LPQLEYFFLE-YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 48/331 (14%), Positives = 104/331 (31%), Gaps = 63/331 (19%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             + L  N +  +        P+L    L  N I+ +       +  +R L+L+ + + +
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 260 KLPSG-IRGL-PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVT 317
            +    +  +     + L+ L +LN++      I  + + +G   L+ L L      + T
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRT 369

Query: 318 EEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH 377
                 +     PL         LN L+    S +    F     L  +    L  + + 
Sbjct: 370 LTNETFVSLAHSPL-------HILN-LTKNKISKIESDAFSWLGHLEVLD---LGLNEIG 418

Query: 378 TSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAK 437
                       +EN+ +  L      +           L ++ F  +            
Sbjct: 419 QELTGQE--WRGLENIFEIYLSYNKYLQ-----------LTRNSFALV------------ 453

Query: 438 DLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK 497
                    +L+ L +              L+++             L  L +S   N+ 
Sbjct: 454 --------PSLQRLMLRRV----------ALKNVDSSPSPFQP-LRNLTILDLS-NNNIA 493

Query: 498 SVYPNPLP-FPKLKKIDVCHCPQLKKLPLNS 527
           ++  + L    KL+ +D+ H   L +L  ++
Sbjct: 494 NINDDMLEGLEKLEILDLQHN-NLARLWKHA 523

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 202 KRVSLMGNGIRSLSEIPT----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
           +R+ L    ++++   P+       L  L L  N I  I D   + +  L +L L+ N +
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-N 515

Query: 258 LRKLPSG--IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L +L       G    LK L  L  LNL+   F  I   ++     +L+++ L
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 53/313 (16%), Positives = 101/313 (32%), Gaps = 72/313 (23%)

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280
             L  L L  N+I +I    F  +  L VL L +N   ++L        QE + LE +  
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT------GQEWRGLENIFE 434

Query: 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH 340
           + L Y ++L +  +   +    L+ L L       V                      ++
Sbjct: 435 IYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPS------------PFQPLRN 481

Query: 341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELES 400
           L +L             L    + +I   +L                  +E L+  +L+ 
Sbjct: 482 LTILD------------LSNNNIANINDDMLEG----------------LEKLEILDLQH 513

Query: 401 CNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVF--VQNLKVLRIGDCYD 458
            NL  +   +       F  G   L+ +++       ++   VF  +  LK++ +G    
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLNN- 571

Query: 459 MEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLP--FPKLKKIDV-- 514
                       ++ +  S  N    L+ L++     + SV        F  L ++D+  
Sbjct: 572 ------------LNTLPASVFNNQVSLKSLNLQ-KNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 515 ----CHCPQLKKL 523
               C C  +   
Sbjct: 619 NPFDCTCESIAWF 631

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            R+    N    +  +     L  L L  N  +EI    F+ +  L+++ L +N +L  L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTL 575

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           P               L+ LNL      S+        F  L  L +
Sbjct: 576 P------ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 208 GNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265
            NG   +          L  + LG N +  +    F +  +L+ L+L+ N  +  +   +
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKV 603

Query: 266 RGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296
            G      A   L  L++ +  F        
Sbjct: 604 FG-----PAFRNLTELDMRFNPFDCTCESIA 629

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + + L  N I++L++    + P L  L L  N +  +  G F ++  LR L LR N  L+
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK 93

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +P G+         L  L  L++   + + I+   +      L+ L +
Sbjct: 94  LIPLGV------FTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEV 135

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + + L  N ++ +          L  L +  N+I  + D  FQ +  L+ L +  N  L 
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLV 141

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +             L  L  L L+    L+ IP + +S    L VLRL
Sbjct: 142 YISHRA------FSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRL 183

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 201 AKRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
            + V        ++   IP       L LG NRI+ +    F S   L  L L  N  + 
Sbjct: 13  DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVS 69

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +  G          L  LR L L   R L +IP  + +G S L  L +
Sbjct: 70  AVEPGA------FNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDI 111

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + + L  N + ++          L TL L  NR++ I  G F  +S L  L +  N  + 
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIV 117

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
            L   +       + L  L+ L +     L  I H+  SG + LE L L  C
Sbjct: 118 ILLDYM------FQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             +S+    + ++    +     L  L L  N I  I       +  L+ + L     L 
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLA 285

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
            +           + L  LR LN+   + L+ +   +      LE L L  
Sbjct: 286 VVEPYA------FRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSEI--PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
            ++ +  N I  L +        L +L +G N +  I+   F  +++L  L+L    +L 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLT 165

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +P+        L  L  L  L L +   ++ I         +L+VL +
Sbjct: 166 SIPTEA------LSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 20/124 (16%)

Query: 206 LMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           L    + S+    +     L+ L L    I  I D  F+ +  L+VL +     L  +  
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 264 G----------------IRGLPQE-LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
                            +  +P   ++ L  LR+LNL Y   +S I   ++    +L+ +
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEI 277

Query: 307 RLFG 310
           +L G
Sbjct: 278 QLVG 281

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 209 NGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRG 267
             + +++        L +L +    +  +     + +  LR L+L  N  +  +   +  
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSM-- 267

Query: 268 LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
               L  L +L+ + L   + L+++      G + L VL +
Sbjct: 268 ----LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNV 303

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 58/344 (16%), Positives = 111/344 (32%), Gaps = 53/344 (15%)

Query: 204 VSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
              M   +  +  +IP       + L  N ++ +    F + S L+ L L     +  + 
Sbjct: 16  YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIE 72

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
                  +    L  L  L L      S  P    SG + LE L             E  
Sbjct: 73  ------DKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKL---ASLESF 122

Query: 323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNF-----------LKYPKLVSITQSVL 371
            + +     +  L   K LN ++  F  S  +  +           L Y  + +IT + L
Sbjct: 123 PIGQ-----LITL---KKLN-VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 372 VKSGVHTSPPFNVLHLAY--MENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVS 429
            +           L ++   ++ +Q    +   L E+ +        + ++  ++L  + 
Sbjct: 174 -QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 430 VHYCRKAKDLTWLVFVQNLKVLRI------GDCYDMEEIISVDKLRDISVIIGSEHNFFA 483
           VH       L    F     +         G C    +   +    D S  I   H   A
Sbjct: 233 VH------RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC-LA 285

Query: 484 QLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNS 527
            +  +S++ G ++K +  +     K + + +  C QLK+ P   
Sbjct: 286 NVSAMSLA-GVSIKYL-EDVPKHFKWQSLSIIRC-QLKQFPTLD 326

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 9/108 (8%)

Query: 208 GNGIRSLSE-IPTCPRLVTLLLGGNRIEEITD-GFFQSMSTLRVLSLRINISLRKLPSGI 265
            NG   +S        L  L    + ++ +T+   F S+  L  L +    + +    GI
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGI 443

Query: 266 RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
                    L  L  L +    F       + +  + L  L L  C  
Sbjct: 444 ------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 202 KRVSLMGNGIRSLSEIPT---CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
           + +    + ++ ++E        +L+ L +     +   DG F  +++L  L +  N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
               S +            L +L+L   + L  I   +     +L++L +
Sbjct: 462 DNTLSNV------FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNM 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMST--LRVLSLRINISLR 259
           K ++L  N      +    P L  L L  N +       +  + T  LR L L  N    
Sbjct: 331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---- 386

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
               G   +      LE+L++L+  ++    +          KL  L +
Sbjct: 387 ----GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 53/331 (16%), Positives = 108/331 (32%), Gaps = 55/331 (16%)

Query: 202 KRVSLMGNGIRSLSEIPT---CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS- 257
           K++++  N I S            LV + L  N I+ IT    Q +     ++L +++S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 258 --LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315
             +  +           + + KL  L L      S I    +   + L V RL    F  
Sbjct: 191 NPIDFIQDQA------FQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF-- 241

Query: 316 VTEEEGNVLCEDAEPLMKEL--LGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVK 373
              ++   L      +M+ L  +       L++T   S  +  F     +     S +  
Sbjct: 242 ---KDERNLEIFEPSIMEGLCDVTIDEFR-LTYTNDFSDDIVKFHCLANV-----SAMSL 292

Query: 374 SGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC 433
           +GV      +   +      Q   +  C L++                   L ++++   
Sbjct: 293 AGVSIKYLED---VPKHFKWQSLSIIRCQLKQ-----------FPTLDLPFLKSLTLTMN 338

Query: 434 RKAKDLTWLVFVQNLKVLRIGDCY------DMEEIISVDKLRDIS------VIIGSEHNF 481
           + +      V + +L  L +               +  + LR +       +I+ +    
Sbjct: 339 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 482 FAQLEYLSISWGTNLKSVYPNPLPFPKLKKI 512
             +L++L     + LK V      F  L+K+
Sbjct: 398 LEELQHLDFQ-HSTLKRV-TEFSAFLSLEKL 426

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 49/330 (14%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L GN I+S S         L  L+    ++  +       + TL+ L++  N  +    
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCK 144

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGFWVVTEE 319
                LP     L  L +++L Y    +I  +    L         L +       +   
Sbjct: 145 -----LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI--- 196

Query: 320 EGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS 379
                    +    + +    L  L   F SS  ++  L+   L  +    L+       
Sbjct: 197 ---------QDQAFQGIKLHELT-LRGNFNSSNIMKTCLQ--NLAGLHVHRLILGEFKDE 244

Query: 380 PPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL 439
               +   + ME L    ++   L     +   +    F     +++ +S+      K L
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLT--YTNDFSDDIVKFH-CLANVSAMSLAGV-SIKYL 300

Query: 440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV 499
             +      + L I  C          +L+               L+ L+++   N  S+
Sbjct: 301 EDVPKHFKWQSLSIIRC----------QLKQFP------TLDLPFLKSLTLT--MNKGSI 342

Query: 500 YPNPLPFPKLKKIDVCHCPQLKKLPLNSSS 529
               +  P L  +D+     L      S S
Sbjct: 343 SFKKVALPSLSYLDLSRN-ALSFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR 279
              L  L L   ++E+I+ G F ++  L++L++  N +L  L S           L  L 
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSH------YNQLYSLS 524

Query: 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            L+  + R +      L      L    L
Sbjct: 525 TLDCSFNR-IETSKGILQHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L    +  +S     T  RL  L +  N +  +    +  + +L  L    N  +    
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSK 537

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSI 291
             +          + L + NL       I
Sbjct: 538 GIL------QHFPKSLAFFNLTNNSVACI 560

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           +L    +R +  +    +L  L L GN +  I  G FQ +  L+ L +  +  ++ +   
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERN 249

Query: 265 -IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
               L         L  +NL +   L+++PH L +    LE + L  
Sbjct: 250 AFDNLQ-------SLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + + L  N IR++          L TL L  NR+  I +G F  +S L+ L LR N  + 
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIE 149

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
            +PS           +  LR L+L   + LS I      G S L  L L  C
Sbjct: 150 SIPSYA------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
              + ++L  N I+ +          L  L L  N I  I  G F  ++ L  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122

Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
            L  +P+G          L KL+ L L     +  IP    +    L  L L   
Sbjct: 123 RLTTIPNGA------FVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 17/107 (15%)

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-RGLPQ--------- 270
            +L  L L  N IE I    F  + +LR L L     L  +  G   GL           
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 271 ------ELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                  L  L KL  L+L     LS I      G   L+ L +   
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 195 FEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSL 252
           F+     +++ ++ + I+ +          LV + L  N +  +    F  +  L  + L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 253 RIN 255
             N
Sbjct: 287 HHN 289

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
             + N +R L    T  +L  L L  N+IEEI + F      +  L    N  L+ +P+ 
Sbjct: 579 DCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNI 637

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS----GFSKLEVLRL 308
                   K++  +  ++  Y +  S   +   S           + L
Sbjct: 638 F-----NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 202 KRVSLMGNGIRSLSE-------IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRI 254
             V    N I S                  T+ L  N I++     F + S +  + L  
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 255 NISLRKLPSGI-RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           N  +  +P    +      K    L  ++L + +  S+      +    L  + +
Sbjct: 707 N-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 25/123 (20%)

Query: 202 KRVSLMGNGIRSLSE---------IPTCPRLVTLLLGGNRIEEITDGF-FQSMSTLRVLS 251
             + L  N + S+ E               L T+ L  N++  ++D F   ++  L  + 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 252 LRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLS------IIPHQLISGFSKLEV 305
           +  N             P +     +L+   + + R           P   I+    L  
Sbjct: 760 VSYN--------CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQ 810

Query: 306 LRL 308
           L++
Sbjct: 811 LQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 11/122 (9%), Positives = 28/122 (22%), Gaps = 26/122 (21%)

Query: 213 SLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL---- 268
             +                +  E  +  + ++  L  + L    ++ +LP  +  L    
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 269 ----------------------PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
                                   +     K++   + Y           +    KL +L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 307 RL 308
             
Sbjct: 579 DC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 35/242 (14%), Positives = 61/242 (25%), Gaps = 43/242 (17%)

Query: 202 KRVSLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             +SL G G +      I     L  L  G +        F     T  +   R +    
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 260 KLPSGIRGLPQ----------------ELKALEKLRYLNLDYTRF------LSIIPHQLI 297
                     Q                E+K ++K   ++L  T+       ++ I    I
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-I 444

Query: 298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDA-----EPLMKELLGSKHLNVLSWTFRSSL 352
              +KL+++      F                    E         K L  +      ++
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 353 GV--QNFLKYPKLVS-------ITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNL 403
                     P+L S          +  +K+                  +Q F +   NL
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD----EDTGPKIQIFYMGYNNL 560

Query: 404 EE 405
           EE
Sbjct: 561 EE 562

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
             + +    I ++ +    P L  L L GN+I ++     + ++ L  L L  N S+  +
Sbjct: 174 SYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAV 231

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +G       L     LR L+L+  + L  +P  L +    ++V+ L
Sbjct: 232 DNGS------LANTPHLRELHLNNNK-LVKVPGGL-ADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 15/112 (13%)

Query: 206 LMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           L GN I  +    +     L  L L  N I  + +G   +   LR L L  N  L K+P 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG 257

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSI-----IPHQLISGFSKLEVLRLFG 310
           G+            ++ + L      +I      P    +  +    + LF 
Sbjct: 258 GLADHKY-------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
                + L  N I  + +        L TL+L  N+I +I+ G F  +  L  L L  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 110

Query: 257 SLRKLPSG--------------IRGLPQE-LKALEKLRYLNLDYTRFLSI-IPHQLISGF 300
            L++LP                I  + +     L ++  + L      S  I +    G 
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 301 SKLEVLRLFGC 311
            KL  +R+   
Sbjct: 171 KKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 202 KRVSLMGNGIRSLSEIPT-----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
             V L  N ++S S I         +L  + +    I  I  G   S   L  L L  N 
Sbjct: 148 IVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGN- 202

Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
            + K+ +        LK L  L  L L +   +S + +  ++    L  L L  
Sbjct: 203 KITKVDAAS------LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNN 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 16/92 (17%)

Query: 205 SLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITD------GFFQSMSTLRVLSLRIN-I 256
            L  N +  +   +     +  + L  N I  I        G+    ++   +SL  N +
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 257 SLRKLPSGI-RGLPQELKALEKLRYLNLDYTR 287
              ++     R +            + L   +
Sbjct: 306 QYWEIQPSTFRCVY-------VRAAVQLGNYK 330

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            L E    E     + + L  N    + E+   P + TL    N I  ++    Q     
Sbjct: 69  VLYETLDLESLSTLRTLDLNNN---YVQELLVGPSIETLHAANNNISRVSCSRGQG---K 122

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
           + + L  N  +  L         +     +++YL+L      ++   +L +    LE L 
Sbjct: 123 KNIYLANN-KITMLRDL------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 308 L 308
           L
Sbjct: 176 L 176

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 22/150 (14%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           +L  N I  +       +L TL L  N++  +    FQS + +  +SLR N  L  +   
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKA 232

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL-----------RLFGCGF 313
           +R           L + +L    F         S   +++ +               C  
Sbjct: 233 LRFSQ-------NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 314 WVVTEEEGNVLCEDAEPLMKEL--LGSKHL 341
             +         +   P    L  LG  H 
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            +  + ++        +   +  L L GN + +I+       + L +L+L  N  L +  
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETL 74

Query: 263 SGIRGLP------------QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
             +  L             QEL     +  L+      +S +     S     + + L
Sbjct: 75  D-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN-ISRVS---CSRGQGKKNIYL 127

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 213 SLSEIPT-CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE 271
           ++ EI     R     +  + +++      QS   ++ L L  N  L ++         +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQIS------AAD 53

Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L    KL  LNL        +    +   S L  L L
Sbjct: 54  LAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 205 SLMGNGIRSLSE---IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            L  N I +++      +   L  L L  N I ++        + L+ L L  N  L  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFM 206

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
               +           + +++L   + L +I  + +     LE   L G
Sbjct: 207 GPEFQSAA-------GVTWISLRNNK-LVLIE-KALRFSQNLEHFDLRG 246

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPT-CPRLVTLLLGGNRIEEITDGFFQSMST 246
           ELT+            + L  N ++SL  +    P L  L +  NR+  +  G  + +  
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 247 LRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
           L+ L L+ N  L+ LP G+      L    KL  L+L     L+ +P  L++G   L+ L
Sbjct: 126 LQELYLKGN-ELKTLPPGL------LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTL 177

Query: 307 RL 308
            L
Sbjct: 178 LL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 20/123 (16%)

Query: 204 VSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
           V+     + +L  ++P       L L  N +   +       + L  L+L     L KL 
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ 71

Query: 263 S---------------GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
                            ++ LP   + L  L  L++ + R L+ +P   + G  +L+ L 
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELY 130

Query: 308 LFG 310
           L G
Sbjct: 131 LKG 133

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 42/243 (17%), Positives = 66/243 (27%), Gaps = 43/243 (17%)

Query: 200 GAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
             K + L  N I  +S   +  C  L  L+L  N I  I +  F S+ +L  L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-Y 111

Query: 258 LRKLPSGI-RGLP--QEL----------------KALEKLRYLNLDYTRFLSIIPHQLIS 298
           L  L S   + L     L                  L KL+ L +      + I  +  +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 299 GFSKLEVLRLFGCGFWVVTEE-------------EGNVLCEDAEPLMKELLGSKHL---- 341
           G + LE L +          +                      E  +      + L    
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESC 401
             L     S L         K  +     +    +          L  +  L + E    
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL----LNQISGLLELEFSRN 287

Query: 402 NLE 404
            L+
Sbjct: 288 QLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 212 RSLSEIPT--CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLP 269
            SL+ IP+     + +L L  NRI  I++   Q    L+ L L  N  +  +        
Sbjct: 41  GSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDS---- 95

Query: 270 QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
               +L  L +L+L Y   LS +        S L  L L G
Sbjct: 96  --FSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLG 133

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 27/132 (20%)

Query: 205 SLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN----ISL 258
            +  + ++S     + +   +  L+L   +   + + F    S++  L LR         
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 259 RKLPSG--------------------IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS 298
            +L +G                    +  + + L  +  L  L     + L  +P  +  
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFD 298

Query: 299 GFSKLEVLRLFG 310
             + L+ + L  
Sbjct: 299 RLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 10/126 (7%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPT-----CPRLVTLLLGGNRIEEITDGFFQ 242
            L E   F      + + +      + ++I          L  L +  + ++       +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNM--DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 243 SMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSK 302
           S+  +  L L +      L      +   ++ LE LR  +LD     S +     +   K
Sbjct: 196 SIQNVSHLILHMK-QHILLLEIFVDVTSSVECLE-LRDTDLDTFH-FSELSTGETNSLIK 252

Query: 303 LEVLRL 308
               R 
Sbjct: 253 KFTFRN 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 204 VSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
                + +  + S++P     + L     ++  I  G F     L  + +  N  L  + 
Sbjct: 14  FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG 312
           + +         L KL  + ++    L  I  +       L+ L +   G
Sbjct: 72  ADV------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 205 SLMGNGIRSLSEIPT-----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
            +      +L  I        P L  LL+    I+ + D          +L ++ NI++ 
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 260 KLPSG-IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +      GL        +   L L+    +  I +   +G    E+   
Sbjct: 143 TIERNSFVGLSF------ESVILWLNKNG-IQEIHNSAFNGTQLDELNLS 185

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 205 SLMGNGIRSLSEIPT------CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
            +  N   ++  I            V L L  N I+EI +  F       +     N +L
Sbjct: 134 DIQDN--INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN-NL 190

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +LP+ +               L++  TR  S+  +    G   L+ LR 
Sbjct: 191 EELPNDV------FHGASGPVILDISRTRIHSLPSY----GLENLKKLRA 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 13/82 (15%)

Query: 206 LMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
              N +  L           V L +   RI  +     +++  LR  S     +L+KLP+
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLPT 241

Query: 264 GIRGLPQELKALEKLRYLNLDY 285
                   L+ L  L   +L Y
Sbjct: 242 --------LEKLVALMEASLTY 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            L E    E     + + L  N    + E+   P + TL    N I  ++    Q     
Sbjct: 69  VLYETLDLESLSTLRTLDLNNN---YVQELLVGPSIETLHAANNNISRVSCSRGQG---K 122

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
           + + L  N  +  L         +     +++YL+L      ++   +L +    LE L 
Sbjct: 123 KNIYLANN-KITMLRDL------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 308 L 308
           L
Sbjct: 176 L 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           +L  N I  +       +L TL L  N++  +    FQS + +  +SLR N  L  +   
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKA 232

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           +R           L + +L    F         S   +++ +  
Sbjct: 233 LRFSQN-------LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 20/121 (16%)

Query: 202 KRVSLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K   +  + ++    S   +   +  L L GN + +I+       + L +L+L  N  L 
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLY 71

Query: 260 KLPSGIRGLP------------QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
           +    +  L             QEL     +  L+      +S +     S     + + 
Sbjct: 72  ETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN-ISRVS---CSRGQGKKNIY 126

Query: 308 L 308
           L
Sbjct: 127 L 127

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 213 SLSEIPT-CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE 271
           ++ EI     R     +  + +++      QS   ++ L L  N  L ++         +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQIS------AAD 53

Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L    KL  LNL        +    +   S L  L L
Sbjct: 54  LAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 29/209 (13%)

Query: 205 SLMGNGIRSLSE---IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            L  N I +++      +   L  L L  N I ++        + L+ L L  N      
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN------ 201

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEG 321
              +  +  E ++   + +++L   + L +I  + +     LE   L            G
Sbjct: 202 --KLAFMGPEFQSAAGVTWISLRNNK-LVLIE-KALRFSQNLEHFDL-----------RG 246

Query: 322 NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP 381
           N        L      ++ +  ++      L  QN  +                +  +P 
Sbjct: 247 NGF--HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL-PAPF 303

Query: 382 FNVLHLAYMENLQKFELESCNLEEMKIDS 410
            + L     +       +    E ++ + 
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECER 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 6/106 (5%)

Query: 205 SLMGNGIRSLSEIP--TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
           ++    ++ L+      C        G    E++   F   +  L+     +   L    
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL---LSGQG 322

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           S    L  E +   + R ++    +    +  Q+         L  
Sbjct: 323 SETERLECERENQARQREIDALKEQ-YRTVIDQVTLRKQAKITLEQ 367

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE-IPT-CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K   L  + I +L + + +    L  L L  N I +I D  F  ++ L  L+L  N  L 
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLG 336

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            + S +       + L+KL  L+L Y   +  +  Q   G   L+ L L
Sbjct: 337 SIDSRM------FENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 212 RSLSEIPTCPRLVT-LLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-RGLP 269
           R L ++P  P  V  + L  N I E+ +  F  +  L+ L +        + +   RGL 
Sbjct: 20  RGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 270 QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                   L  L LDY +    +     +G + LEVL L  C
Sbjct: 80  S-------LIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQC 113

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 43/244 (17%), Positives = 66/244 (27%), Gaps = 34/244 (13%)

Query: 202 KRVSLMGNGIRSLSEIPTC---PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-IS 257
           + + +       +    T      L+ L L  N+  ++  G F  ++ L VL+L    + 
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVT 317
              L           K L  L  L L       I P        +  VL L         
Sbjct: 117 GAVLSGNF------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-------- 162

Query: 318 EEEGN---VLCEDA------EPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQ 368
               N    +CE+       +      L S  L  ++  +       N     K  SIT 
Sbjct: 163 ---FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF---KNTSITT 216

Query: 369 SVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTV 428
             L  +G   S             +Q   L +          T   K      F+ L   
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-NFKDPDNFTFKGLEAS 275

Query: 429 SVHY 432
            V  
Sbjct: 276 GVKT 279

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 214 LSEIPT-----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
           L  I +       +L  L L  N I  + D  F  +  L+ L+L  N  L+ +P GI   
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI--- 390

Query: 269 PQELKALEKLRYLNLD 284
                 L  L+ + L 
Sbjct: 391 ---FDRLTSLQKIWLH 403

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 202 KRVSLMGNGIRSLSEIPT----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
           + + L  + I +             L +L L  N    +    F+    L +L L     
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-R 411

Query: 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVT 317
           L+   +         + L  L+ LNL ++  L I   QL  G   L+ L L G  F    
Sbjct: 412 LKVKDA-----QSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 318 EEEGNVL 324
            ++ N L
Sbjct: 466 IQKTNSL 472

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + +    N + ++  +       L  L L   +I  I +  FQS   L  L L  N  L 
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLI 94

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            +          L   + L++L    T  +S I    +     LE L L
Sbjct: 95  FMAETA------LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYL 136

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260
           + + L    +  L S +     L  L+L  N+ E +      +  +L  LS++ N    +
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSI-IPHQLISGFSKLEVLRL 308
           L +G       L+ LE LR L+L +    +    +  +   S L+ L L
Sbjct: 341 LGTGC------LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 11/113 (9%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260
           K  +    G+  +   +P       L    N +  I +  F  +  L  L L     +  
Sbjct: 15  KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYW 71

Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
           +           ++  +L  L L     + +    L SG   L+ L     G 
Sbjct: 72  IHEDT------FQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 47/330 (14%), Positives = 96/330 (29%), Gaps = 50/330 (15%)

Query: 205 SLMGNGIRSLSEIP--TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L  N +  ++E        L  L      I  I      +  TL  L L  N  +  + 
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIK 145

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
                   +    EKL+ L+      +  +  + +S   +   L L            GN
Sbjct: 146 ------LPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSL---------NLNGN 189

Query: 323 VLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN--FLKYPKLVSITQSVLVKSGVHTSP 380
            +    EP   +    + LN    T    +  +         L   T   +    +  + 
Sbjct: 190 DI-AGIEPGAFDSAVFQSLN-FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 381 PFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT 440
              +  +    +++   L+      +  ++       F   F  L  + +     ++  +
Sbjct: 248 FEGLCEM----SVESINLQKHYFFNISSNT-------F-HCFSGLQELDLTATHLSELPS 295

Query: 441 WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY 500
            LV +  LK L +                    +     + F  L +LSI   T    + 
Sbjct: 296 GLVGLSTLKKLVLSANK-------------FENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 501 PNPL-PFPKLKKIDVCHCPQLKKLPLNSSS 529
              L     L+++D+ H   ++     +  
Sbjct: 343 TGCLENLENLRELDLSHD-DIETSDCCNLQ 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280
             L  L L  + ++  ++  F  +  L+ L+L+ N      P G       L+ L +L  
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN----HFPKGNIQKTNSLQTLGRLEI 480

Query: 281 LNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L L +   LS I     +    +  + L
Sbjct: 481 LVLSFCD-LSSIDQHAFTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 205 SLMGNGIRSLSEIPT-----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           +L GN     +   T       RL  L+L    +  I    F S+  +  + L  N  L 
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLT 513

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                     + L  L+ + YLNL     +SII   L+   S+   + L
Sbjct: 514 SSS------IEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITD---GFFQSMSTLRVLSLRINI 256
           K ++L  + +   SE      P L  L L GN   +         Q++  L +L L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC- 486

Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            L  +            +L+ + +++L + R  S          S L+ + L
Sbjct: 487 DLSSIDQHA------FTSLKMMNHVDLSHNRLTSSSI----EALSHLKGIYL 528

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 205 SLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
            +    +  +  ++P    L  L L  N+I+ I        S L  L L  N  +R + +
Sbjct: 178 RISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN 234

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           G       L  L  LR L+LD  + LS +P  L      L+V+ L
Sbjct: 235 GS------LSFLPTLRELHLDNNK-LSRVPAGL-PDLKLLQVVYL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 206 LMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           L  N I+++    +    +L  L LG N+I  I +G    + TLR L L  N  L ++P+
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA 258

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSI-----IPHQLISGFSKLEVLRLFG 310
           G+  L         L+ + L       +      P       +    + LF 
Sbjct: 259 GLPDLK-------LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 13/111 (11%)

Query: 200 GAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
               + L  N I  L +        L  L+L  N+I +I +  F  +  L+ L +  N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-H 113

Query: 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L ++P               L  L +   R +  +P  + SG   +  + +
Sbjct: 114 LVEIPPN---------LPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEM 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 212 RSLSEIPT-CPRLVTLL-LGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLP 269
             L  +P       TLL L  N I E+    F+ +  L  L L  N  + K+        
Sbjct: 43  LGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKA---- 97

Query: 270 QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                L KL+ L +     L  IP  L    S L  LR+
Sbjct: 98  --FSPLRKLQKLYISKNH-LVEIPPNL---PSSLVELRI 130

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-ISLR 259
           +++ +  N +  +   +P    LV L +  NRI ++  G F  +  +  + +  N +   
Sbjct: 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 260 KLPSGI-RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
               G   GL        KL YL +   + L+ IP  L      L  L L
Sbjct: 163 GFEPGAFDGL--------KLNYLRISEAK-LTGIPKDL---PETLNELHL 200

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL 281
           +L  L +   ++  I     ++   L  L L  N  ++ +          L    KL  L
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHN-KIQAIELED------LLRYSKLYRL 222

Query: 282 NLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
            L + + + +I +  +S    L  L L  
Sbjct: 223 GLGHNQ-IRMIENGSLSFLPTLRELHLDN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 16/89 (17%)

Query: 205 SLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMST------LRVLSLRIN-I 256
            L  N +  +   +P    L  + L  N I ++    F  +           +SL  N +
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 257 SLRKLPSGI-RGLPQELKALEKLRYLNLD 284
              ++     R +            +   
Sbjct: 307 PYWEVQPATFRCVTD-------RLAIQFG 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 56/355 (15%), Positives = 105/355 (29%), Gaps = 74/355 (20%)

Query: 178 EQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEIT 237
                    ++ T+    E+      +    + I  ++ I     L  L+   N I  + 
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD 80

Query: 238 DGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI 297
                  + L  L+   N  L  L          +  L KL YLN D  + L+ +    +
Sbjct: 81  ---LSQNTNLTYLACDSN-KLTNLD---------VTPLTKLTYLNCDTNK-LTKLD---V 123

Query: 298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNF 357
           S    L  L               N L E       ++  +  L  L       +   + 
Sbjct: 124 SQNPLLTYLNC-----------ARNTLTEI------DVSHNTQLTELDCHLNKKITKLDV 166

Query: 358 LKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKL 417
               +L     ++       T      L ++  + L +   ++ N+ ++ +         
Sbjct: 167 TPQTQL----TTLDCSFNKITE-----LDVSQNKLLNRLNCDTNNITKLDL--------- 208

Query: 418 FQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVD-----KLRDIS 472
             +    L  +     +    LT +  V  L  L   DC     +  +D     KL  + 
Sbjct: 209 --NQNIQLTFLDCSSNK----LTEI-DVTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLH 260

Query: 473 VIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNS 527
                       L  + ++  T L           K+K++DV H  QL  L   +
Sbjct: 261 C----IQT---DLLEIDLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQA 306

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 16/106 (15%), Positives = 25/106 (23%), Gaps = 18/106 (16%)

Query: 205 SLMGNGIRSLSEIP--TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
                G R + E+      +L  L      I E+          L  L L     L +L 
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNT-ELTELD 334

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                    +    KL+ L+              +     L     
Sbjct: 335 ---------VSHNTKLKSLSCVNAHIQDFSS---VGKIPALNNNFE 368

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + +S +  G+ S++ +P   +L  L L  NR+    +   +    L  L+L  N      
Sbjct: 45  EFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN------ 98

Query: 262 PSGIRGLPQ--ELKALEKLRYLNL 283
              I+ L     LK LE L+ L+L
Sbjct: 99  --KIKDLSTIEPLKKLENLKSLDL 120

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 206 LMGNGIRSLSEIPT----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           +     ++   +         + ++ L  N+I +     F + S L  ++L  N  L ++
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEI 472

Query: 262 PSGI-RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           P    +   +  K    L  ++L + +   +      +    L  + L
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEIT-DGFFQSMSTLRVLSLRINISLRKLPSGIRG 267
           +  ++L++ P   ++  + +G N ++    +   Q M  L +L    N         + G
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN--------QLEG 344

Query: 268 LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                 +  KL  LNL Y + ++ IP        ++E L     
Sbjct: 345 KLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 213 SLSEIP----TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
            L        +  +L +L L  N+I EI   F      +  LS   N  L+ +P+     
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIF--- 396

Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQL------ISGFSKLEVLRL 308
             + K++  +  ++  Y    S+                 +  + L
Sbjct: 397 --DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 12/99 (12%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 215 SEIPTCPRLVTL-LLGGNRIEEITDGFFQSMSTLRVLSLRIN--ISLRKLPSGIRGLPQE 271
            +      L  + +     + ++       +  ++++++  N  IS  +L    + L  +
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALA-D 300

Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
               EK++ + + Y    +      +    KL +L    
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 20/109 (18%)

Query: 214 LSEIPT----CPRLVTLLLGGNRIEEITD--------GFFQSMSTLRVLSLRINISLRKL 261
           L+++PT     P +  + +  NR                      ++++ +  N +L+  
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF 320

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           P     +   L+ ++KL  L   Y +    +P        KL  L L  
Sbjct: 321 P-----VETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 35/140 (25%)

Query: 202 KRVSLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGF-------FQSMSTLRVLSL 252
             ++L  N I         T   L ++ L GN + EI           F++   L  + L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 253 RINISLRKLPSGIR------------------GLPQELKALEKLRYLNLDYTRFLS---- 290
           R N  L KL    R                    P +      L+   +   R       
Sbjct: 496 RFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 291 --IIPHQLISGFSKLEVLRL 308
               P + I+    L  L++
Sbjct: 555 LREWP-EGITLCPSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 15/126 (11%), Positives = 38/126 (30%), Gaps = 20/126 (15%)

Query: 203 RVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSL--RINISLR 259
           ++  + N I  +   +    +L    +G +                         ++   
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 260 KLPS----------GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL-------ISGFSK 302
            L             +  LP  LKAL +++ +N+   R +S    +             K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 303 LEVLRL 308
           ++++ +
Sbjct: 307 IQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 10/121 (8%), Positives = 28/121 (23%), Gaps = 19/121 (15%)

Query: 208 GNGIRSLSEIPTCPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGI 265
              +     I                +   +     +  S L    +  +   + +    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 266 R----------------GLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLF 309
           R                 + + +  L KLR   +  + F++    +        E  + +
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE-NENSEYAQQY 238

Query: 310 G 310
            
Sbjct: 239 K 239

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN--ISLR 259
           + +SL+  G+ S+S +P  P+L  L L  NRI    D   + +  L  L+L  N    + 
Sbjct: 52  EFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 260 KLPSGIRGLPQELKALEKLRYLNL 283
            L        + LK LE L+ L+L
Sbjct: 112 TL--------EPLKKLECLKSLDL 127

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTC---PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
             + L  N +  L    T      L +LLL  N +  I+   F  +  LR L L  N  L
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HL 100

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
             L   +         L+ L  L L     + ++        ++L+ L L   
Sbjct: 101 HTLDEFL------FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN 146

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 203 RVSLMGNGIRSLSEIPT-----CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS 257
            + L  N +     I +      P L  L L  N +  + +  F  +  L VL L  N  
Sbjct: 68  SLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-H 123

Query: 258 LRKLPSGI-RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           +  +       + Q       L+ L L   + +S  P +LI   +KL  L L
Sbjct: 124 IVVVDRNAFEDMAQ-------LQKLYLSQNQ-ISRFPVELIKDGNKLPKLML 167

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 44/344 (12%), Positives = 95/344 (27%), Gaps = 44/344 (12%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             +++  N I  L    I +  +L  L++  NRI+ +    F+    L  L L  N  L 
Sbjct: 24  TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLV 82

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC-----GFW 314
           K+                L++L+L +  F ++   +     S+L+ L L           
Sbjct: 83  KISCH---------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 315 VVTEEEG----------NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLV 364
            +                   ED E L      S H+   +      +   +      L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 365 SITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRS 424
                 +++    +     +  L     L    L +            ++         +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH-----TT 248

Query: 425 LNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQ 484
           +   S+   +    L +  F  +   L+    +     +  D        I   +  F+ 
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ----VVSDVFGFPQSYI---YEIFSN 301

Query: 485 LEYLSISWGTNLKSVYPNPLP--FPKLKKIDVCHCPQLKKLPLN 526
           +   + +   +   +     P        +D  +   L      
Sbjct: 302 MNIKNFT--VSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFE 342

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 7/106 (6%)

Query: 205 SLMGNGIRSLSEIP--TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
           +   +G R +  +        + L    N + +        ++ L  L L++N  L++L 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELS 364

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                + +    ++ L+ L++              S    L  L +
Sbjct: 365 K----IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 195 FEEWEGAKRVSLMGNGIRSLSEIPTC----PRLVTLLLGGNRIEEI-TDGFFQSMSTLRV 249
                  + + L  N ++ LS+I         L  L +  N +      G      +L  
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 250 LSLRIN----ISLRKLPSG----------IRGLPQELKALEKLRYLNLDYTRFLSIIPHQ 295
           L++  N       R LP            I+ +P+++  LE L+ LN+   + L  +P  
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDG 462

Query: 296 LISGFSKLEVLRLFG 310
           +    + L+ + L  
Sbjct: 463 IFDRLTSLQKIWLHT 477

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           SL  NGI  ++ +   P+L +L LG N+I +IT      ++ L  LSL  N  +  +   
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN-QISDIVP- 170

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                  L  L KL+ L L       +     ++G   L+VL LF  
Sbjct: 171 -------LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 7e-09
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            +T+A    E     ++    + I+S+  I   P +  L L GN++ +I      ++  L
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNL 89

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
             L L  N  ++ L S        LK L+KL+ L+L++     I     +    +LE L 
Sbjct: 90  GWLFLDEN-KIKDLSS--------LKDLKKLKSLSLEHNGISDING---LVHLPQLESLY 137

Query: 308 L 308
           L
Sbjct: 138 L 138

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            +++          + + L  N I  ++ +    +L TL L  N+I +I       ++ L
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKL 177

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296
           + L L  N         I  L + L  L+ L  L L     L+   +  
Sbjct: 178 QNLYLSKN--------HISDL-RALAGLKNLDVLELFSQECLNKPINHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            + +    + +    + +L    +           +  ++   + I+ +     Q +  +
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNV 67

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
             L L  N         +  + + L  L+ L +L LD  +   +     +    KL+ L 
Sbjct: 68  TKLFLNGN--------KLTDI-KPLTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSLS 115

Query: 308 LFGC 311
           L   
Sbjct: 116 LEHN 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
             +SL  N I  +  +    +L  L L  N I ++       +  L VL L     L K 
Sbjct: 156 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 213

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSI 291
            +        L     ++  +        I
Sbjct: 214 INHQS----NLVVPNTVKNTDGSLVTPEII 239

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 21/126 (16%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-ISLRK 260
           K +++      + + I     L  L + G  +          +++L +L +  +      
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 261 LPSGIRGLPQ----------------ELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLE 304
           L + I  LP+                 LK L +L+ LN+ +           I  F KL 
Sbjct: 129 L-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLN 184

Query: 305 VLRLFG 310
            L  F 
Sbjct: 185 QLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 12/108 (11%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-ISLRK 260
             ++L    +  L+ I     +  L +               +S L  L +    ++  K
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDK 104

Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           +P+        L  L  L  L++ ++          I+   K+  + L
Sbjct: 105 IPN--------LSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDL 143

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            +T+    EE E   ++ + G  + S+  I     L  L L GN+I +I+     ++  L
Sbjct: 33  SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKL 90

Query: 248 RVLSLRIN-----ISLRKLPS---------GIRGLPQELKALEKLRYLNLDYTRFLSIIP 293
             L +  N      +L+ L +          I  +   L  L K+  LNL     LS + 
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLS 149

Query: 294 HQLISGFSKLEVLRLFGC 311
              +S  + L  L +   
Sbjct: 150 P--LSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 17/107 (15%), Positives = 46/107 (42%), Gaps = 14/107 (13%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
             +++  + ++ ++ I     L +L L  N+IE+I+     S+++L   +  +N  +  +
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN-QITDI 214

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                     +  + +L  L +   +   + P   ++  S+L  L +
Sbjct: 215 TP--------VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEI 250

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-----I 256
             +SL  N I  +S + +   L       N+I +IT     +M+ L  L +  N      
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 257 SLRKLPS---------GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
            L  L            I  +   +K L KL+ LN+   +   I     ++  S+L  L 
Sbjct: 238 PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLF 293

Query: 308 L 308
           L
Sbjct: 294 L 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           GA  ++ +   I  +         +  +L    + ++     + + ++  L +       
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE---- 54

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                +  +   ++ L  L YLNL+  +   I P   +S   KL  L +
Sbjct: 55  ----KVASIQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYI 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
            L  + I  +S +    ++ +L LG N            M+ L  L++  +         
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTES--------K 166

Query: 265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           ++ +   +  L  L  L+L+Y +   I P   ++  + L     + 
Sbjct: 167 VKDVT-PIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 206 LMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265
           +  N I  +S +    +L +L L  N++          ++ L  L L  N         I
Sbjct: 272 VGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN--------HI 323

Query: 266 RGLPQELKALEKLRYLNLDYTR 287
             +   L +L K+   +     
Sbjct: 324 TDIR-PLASLSKMDSADFANQV 344

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN--ISLR 259
             +    N IR L   P   RL TLL+  NRI  I +G  Q++  L  L L  N  + L 
Sbjct: 45  DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 260 KLPSGIRGLPQELKALEKLRYLNL 283
            L          L +L+ L YL +
Sbjct: 105 DL--------DPLASLKSLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
           V L    I   ++     R   L L G +I  I +    ++     +    N  +RK   
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDN-EIRK--- 56

Query: 264 GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            + G P     L +L+ L ++  R +  I   L      L  L L
Sbjct: 57  -LDGFPL----LRRLKTLLVNNNR-ICRIGEGLDQALPDLTELIL 95

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            +T+     + +    +     GI+S+  +     L  +    N++ +IT    ++++ L
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKL 92

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
             + +  N         I  +   L  L  L  L L   +   I P   +   + L  L 
Sbjct: 93  VDILMNNN--------QIADIT-PLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLE 140

Query: 308 L 308
           L
Sbjct: 141 L 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 56/342 (16%), Positives = 110/342 (32%), Gaps = 74/342 (21%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS---- 257
             ++L  N I  +  +     L  L L  N I +I+      +++L+ LS    ++    
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP 172

Query: 258 LRKLPS---------GIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L  L +          +  +   L  L  L  L     +   I P   +   + L+ L L
Sbjct: 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSL 228

Query: 309 FGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQ 368
                       GN L +D   L   L    +L  L         +       KL  +  
Sbjct: 229 -----------NGNQL-KDIGTL-ASL---TNLTDLDLANNQISNLAPLSGLTKLTELK- 271

Query: 369 SVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTV 428
             L  + +    P     LA +  L   EL    LE         +  L     ++L  +
Sbjct: 272 --LGANQISNISP-----LAGLTALTNLELNENQLE-----DISPISNL-----KNLTYL 314

Query: 429 SVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYL 488
           ++++     D++ +  +  L+ L   +           K+ D+S +          + +L
Sbjct: 315 TLYFN-NISDISPVSSLTKLQRLFFYNN----------KVSDVSSL-----ANLTNINWL 358

Query: 489 SISWGTNLKSVYPNPL-PFPKLKKIDVCHCPQLKKLPLNSSS 529
           S      +  +   PL    ++ ++ +         P+N  +
Sbjct: 359 SAG-HNQISDL--TPLANLTRITQLGLNDQ-AWTNAPVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 68/323 (21%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            +  L    +          ++ TL      I+ I     + ++ L  ++   N      
Sbjct: 27  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNN------ 78

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEG 321
              +  +   LK L KL  + ++  +   I P   ++  + L  L LF            
Sbjct: 79  --QLTDIT-PLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI-------- 124

Query: 322 NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPP 381
                D +PL K L    +LN L  +  +   +        L    Q +   + V    P
Sbjct: 125 ----TDIDPL-KNL---TNLNRLELSSNTISDISALSGLTSL----QQLSFGNQVTDLKP 172

Query: 382 FNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW 441
                LA +  L++ ++ S  + ++       + KL      +L ++      +  D+T 
Sbjct: 173 -----LANLTTLERLDISSNKVSDI-----SVLAKL-----TNLESLIATNN-QISDITP 216

Query: 442 LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYP 501
           L  + NL  L +             +L+DI  +          L  L ++    + ++  
Sbjct: 217 LGILTNLDELSLNGN----------QLKDIGTLAS-----LTNLTDLDLA-NNQISNL-A 259

Query: 502 NPLPFPKLKKIDVCHCPQLKKLP 524
                 KL ++ +    Q+  + 
Sbjct: 260 PLSGLTKLTELKLGAN-QISNIS 281

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K + L  N +R L      + P L  L L    I+ I DG +QS+S L  L L  N  ++
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 89

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            L  G          L  L+ L    T  L+ + +  I     L+ L +
Sbjct: 90  SLALGA------FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV 131

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 205 SLMGNGIRSL-SEIPT-CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP 262
            L GN I+SL     +    L  L+     +  + +     + TL+ L++  N  ++   
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFK 140

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                 P+    L  L +L+L   + +  I    +    ++ +L L
Sbjct: 141 L-----PEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-RGLPQELKALEKLR 279
             L TL+L GN I+ +  G F  +S+L+ L      +L  L +     L         L+
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT-------LK 127

Query: 280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
            LN+ +    S    +  S  + LE L L   
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLV---TLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
           K +++  N I+S         L     L L  N+I+ I     + +  + +L+L +++SL
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
             +      +        +L+ L LD  + L  +P  +    + L+ + L  
Sbjct: 187 NPMNF----IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + + L  N I ++S +     L  L +G  ++ ++T     ++S L  L    N      
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN------ 183

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
              I  +   L +L  L  ++L   +   + P   ++  S L ++ L   
Sbjct: 184 --KISDIS-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            +T+     + +G   +S  G G+ ++  +     L+ L L  N+I ++     ++++ +
Sbjct: 30  NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKI 87

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
             L L  N  L+ + +        +  L+ ++ L+L  T+   + P   ++G S L+VL 
Sbjct: 88  TELELSGN-PLKNVSA--------IAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLY 135

Query: 308 L 308
           L
Sbjct: 136 L 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           K + L    I  ++ +     L  L L  N+I  I+      ++ L+ LS+         
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA------ 161

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
              +  L   L  L KL  L  D  +   I P   ++    L  + L
Sbjct: 162 --QVSDLT-PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + +S+    +  L+ +    +L TL    N+I +I+     S+  L  + L+ N      
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN------ 205

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIP 293
              I  +   L     L  + L      +   
Sbjct: 206 --QISDVS-PLANTSNLFIVTLTNQTITNQPV 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260
           A +++   + +           + TL   G  +  I     Q ++ L  L L+ N  +  
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDN-QITD 77

Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L          LK L K+  L L      ++     I+G   ++ L L
Sbjct: 78  LA--------PLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDL 114

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           K +SL  NGI  ++ +   P+L +L LG N+I +IT      ++ L  LSL  N  +  +
Sbjct: 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN-QISDI 171

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC 311
                     L  L KL+ L L       +     ++G   L+VL LF  
Sbjct: 172 VP--------LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTL 247
            +T+A    E     ++    + I+S+  I   P +  L L GN++ +I      ++  L
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNL 92

Query: 248 RVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLR 307
             L L  N  ++ L S        LK L+KL+ L+L++     I     +    +LE L 
Sbjct: 93  GWLFLDEN-KVKDLSS--------LKDLKKLKSLSLEHNGISDING---LVHLPQLESLY 140

Query: 308 LFGCG 312
           L    
Sbjct: 141 LGNNK 145

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 189 LTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLR 248
           + +    + +    + +L    +           +  ++   + I+ +     Q +  + 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVT 71

Query: 249 VLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            L L  N  L  +          L  L+ L +L LD  +   +     +    KL+ L L
Sbjct: 72  KLFLNGN-KLTDIK--------PLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSL 119

Query: 309 FGC 311
              
Sbjct: 120 EHN 122

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 201 AKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
            K +SL  N I  L    I     L  L L  NRI  +    F     L  L +  N  L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           + +             +  LR+L+L +  F  +   +     +KL  L L  
Sbjct: 113 QNISCC---------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 190 TEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCP-RLVTLLLGGNRIEEIT----DGFFQSM 244
           +        +  + + L  NG+++  ++      + +L      +  +     D      
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 245 STLRVLSLRIN----ISLRKLPS----------GIRGLPQELKALEKLRYLNLDYTRFLS 290
            ++ VL+L  N       R LP            I  +P+++  L+ L+ LN+   + L 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LK 486

Query: 291 IIPHQLISGFSKLEVLRLFG 310
            +P  +    + L+ + L  
Sbjct: 487 SVPDGVFDRLTSLQYIWLHD 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 14/113 (12%)

Query: 205 SLMGNGIRSLS-EIPT--CPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRK 260
           ++  N        IP      L  L L  N+   EI D    +  TL  L L  N     
Sbjct: 253 NISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN----H 305

Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
              G   +P    +   L  L L    F   +P   +     L+VL L    F
Sbjct: 306 F-YG--AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 202 KRVSLMGNGIR-SLSEIPTCPRLVTLLLGGNRIE-EITDGF-FQSMSTLRVLSLRINISL 258
           + + L  + I  S+S       L +L L  N +   +T      S S L+ L++  N +L
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-TL 138

Query: 259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL--ISGFSKLEVLRLFGCGF 313
                   G       L  L  L+L                 G  +L+ L + G   
Sbjct: 139 -----DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 215 SEIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK 273
            E+     L TL+L  N +  EI  G   + + L  +SL  N    +L +G   +P+ + 
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNN----RL-TG--EIPKWIG 511

Query: 274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            LE L  L L    F   IP + +     L  L L
Sbjct: 512 RLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 23/127 (18%)

Query: 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRIN-----I- 256
            S+ G  +        C  L  L + GN+I  ++          L  L +  N     I 
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP 217

Query: 257 SLRKLPS---------GIRG-LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
            L    +          + G   + +    +L+ LN+   +F+  IP         L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYL 274

Query: 307 RLFGCGF 313
            L    F
Sbjct: 275 SLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLP 262
             L        S + +   L +L L  + I   ++   F+  ++L  L L  N     + 
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVT 117

Query: 263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
           +        L +   L++LN+                 + LEVL L     
Sbjct: 118 T-----LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 216 EIPT----CPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQ 270
           EIP+    C  L  + L  NR+  EI   +   +  L +L L  N       SG   +P 
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNN----SF-SG--NIPA 532

Query: 271 ELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           EL     L +L+L+   F   IP  +     K+    + G
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 212 RSLSEIPTC--PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLP 269
           + L+EIPT     +  + L  N I+ I  G F     LR + L  N  + +L        
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDA---- 75

Query: 270 QELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
              + L  L  L L   + ++ +P  L  G   L++L L
Sbjct: 76  --FQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLL 111

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY 280
             L +L+L GN+I E+    F+ + +L++L L  N  +  L           + L  L  
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDA------FQDLHNLNL 132

Query: 281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           L+L   + L  I     S    ++ + L  
Sbjct: 133 LSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 188 ELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMS 245
            L     F++    ++++   N I  + E        +  +LL  NR+E +    F+ + 
Sbjct: 46  VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105

Query: 246 TLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEV 305
           +L+ L LR N  +  + +           L  +R L+L   + ++ +          L  
Sbjct: 106 SLKTLMLRSN-RITCVGNDS------FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLST 157

Query: 306 LRLFG 310
           L L  
Sbjct: 158 LNLLA 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSE-IPTC-PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           + + L  N +++L   I      L TL +  N+++ +  G F  +  L  L L  N  L+
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLK 122

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            LP  +        +L KL YL+L Y   L  +P  +    + L+ LRL
Sbjct: 123 SLPPRV------FDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 202 KRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
           K++ L  N + SL         +L  L L  N+++ +  G F+ +  L  L +  N  L+
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQ 98

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
            LP G+         L  L  L LD  +  S +P ++    +KL  L L  
Sbjct: 99  ALPIGV------FDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGY 142

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 202 KRVSLMGNGIRSLSE-IPTC-PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR 259
             + L  N ++SL   +     +L  L LG N ++ +  G F  +++L+ L L  N  L+
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLK 170

Query: 260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           ++P G          L +L+ L LD  + L  +P        KL++L+L  
Sbjct: 171 RVPEGA------FDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQE 214

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 21/133 (15%)

Query: 197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI 256
           E+   + + L    +  L  +     +  L L  NR+  +      ++  L VL    N 
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA 497

Query: 257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV 316
            L  +          +  L +L+ L L   R       Q +    +L +L L        
Sbjct: 498 -LENVD--------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL-------- 540

Query: 317 TEEEGNVLCEDAE 329
              +GN LC++  
Sbjct: 541 ---QGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITD-GFFQSMSTLRVLSLRINISLRKLPS 263
               N + ++  +   PRL  LLL  NR+++        S   L +L+L+ N SL +   
Sbjct: 492 QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG 550

Query: 264 GIRGLPQELKALEKL 278
               L + L ++  +
Sbjct: 551 IQERLAEMLPSVSSI 565

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 209 NGIRSLSEIPTCPRLVTL-LLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI-R 266
             + SL  +P    L  L +     ++ +     + +  LR L++  +  LR +      
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH 77

Query: 267 GLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
             P       +L  LNL +   L  +  + + G S L+ L L G
Sbjct: 78  FTP-------RLSRLNLSFNA-LESLSWKTVQGLS-LQELVLSG 112

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 189 LTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLR 248
           +T+A    E     ++    + I+S+  I   P +  L LGGN++ +I     + ++ L 
Sbjct: 31  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLT 88

Query: 249 VLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
            L L  N  L+ LP+G+         L  L+ L L   + L  +P  +    + L  L L
Sbjct: 89  YLILTGN-QLQSLPNGV------FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNL 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 32/139 (23%)

Query: 205 SLMGNGIRSLSEIP------TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL 258
            +     R+L          T P  V L L    + +  D  F+ +S L+ +++     L
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAA-GL 116

Query: 259 RKLPSGI----------------RGLPQELKALEKLRYLNLDYTRFLSIIPHQL------ 296
            +LP  +                R LP  + +L +LR L++     L+ +P  L      
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 297 --ISGFSKLEVLRLFGCGF 313
               G   L+ LRL   G 
Sbjct: 177 GEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 53/326 (16%), Positives = 99/326 (30%), Gaps = 85/326 (26%)

Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQ-SMSTLRVLSLRINISLRKLPSGIRG 267
           N   S                G  ++   D     +      L LR    L + P     
Sbjct: 44  NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFR 102

Query: 268 LPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCED 327
           L         L+++ +D    L  +P   +  F+ LE L L       +     +     
Sbjct: 103 L-------SHLQHMTIDAAG-LMELPDT-MQQFAGLETLTLARNPLRALPASIAS----- 148

Query: 328 AEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHL 387
               +  L   + L++ +               P+L  + + +        +        
Sbjct: 149 ----LNRL---RELSIRA--------------CPELTELPEPL----ASTDASG----EH 179

Query: 388 AYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWL----V 443
             + NLQ   LE   +  +       +  L     ++L ++ +        L+ L     
Sbjct: 180 QGLVNLQSLRLEWTGIRSL----PASIANL-----QNLKSLKIRNSP----LSALGPAIH 226

Query: 444 FVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP 503
            +  L+ L +  C           LR+   I G      A L+ L +   +NL +     
Sbjct: 227 HLPKLEELDLRGC---------TALRNYPPIFGG----RAPLKRLILKDCSNLLT----- 268

Query: 504 LPF-----PKLKKIDVCHCPQLKKLP 524
           LP       +L+K+D+  C  L +LP
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 209 NGIRSL-SEIPTCPRLVTL-LLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIR 266
             +R+          L  L L   + +  +     + ++ L  L LR  ++L +LPS I 
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIA 298

Query: 267 GLPQELKALEKLRYLNLDYTRFLSIIPHQLIS 298
            LP           + +       +  H+ ++
Sbjct: 299 QLP-------ANCIILVPPHLQAQLDQHRPVA 323

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 19/120 (15%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN------ 255
           +  +   + I+SL+ +     L  L L  N+I +++    + ++ L  LS+  N      
Sbjct: 44  QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLN 101

Query: 256 ----ISLRKLPSG---IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                 L +L      +R     L  L+ L  L++   +  SI+    +   SKLEVL L
Sbjct: 102 GIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDL 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 206 LMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265
                I  +   P     V   LG   + ++     + +S ++  +   + +++ L    
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLAG-- 58

Query: 266 RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
                 ++    L+ L+L + +   + P   +   +KLE L +
Sbjct: 59  ------MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSV 92

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 23/122 (18%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            + +L    +  L        +       + I+ +     Q  + L+ L L  N  +  L
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDL 78

Query: 262 PSGIRGLPQELKALE---------------KLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
            S ++ L + L+ L                 L  L LD            +     LE+L
Sbjct: 79  -SPLKDLTK-LEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS---LIHLKNLEIL 133

Query: 307 RL 308
            +
Sbjct: 134 SI 135

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            R+ L  N +R    +     L  L +  N+++ I       +S L VL L  N      
Sbjct: 109 SRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGN------ 160

Query: 262 PSGIRGLPQELKALEKLRYLNLDY 285
              I      L  L+K+ +++L  
Sbjct: 161 --EITNTG-GLTRLKKVNWIDLTG 181

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           K ++L  N I  +S +     L  L LG N I++I +       TL  L +  N  +  L
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASL 108

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                     ++ L  LR L +   +  +      ++   KLE L L G
Sbjct: 109 --------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 36/151 (23%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGF------------------FQS 243
           + + +  N +  L E+     L  + +  N ++++ D                     Q+
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 193

Query: 244 MSTLRVLSLRINISLRKLPSGIRGL------------PQELKALEKLRYLNLDYTRFLSI 291
           +  L  +    N SL+KLP     L              EL+ L  L  +  D    L  
Sbjct: 194 LPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKT 251

Query: 292 IPHQLISGFSKLEVLRLFGCGFWVVTEEEGN 322
           +P         LE L +       + E   +
Sbjct: 252 LPDLP----PSLEALNVRDNYLTDLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + +    N +  L E+   P L T+    N ++ + D       +L  L++R N  L  L
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDN-YLTDL 272

Query: 262 PSGIRGLPQELKAL-----------EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           P   + L   L                L YLN      +  +          LE L +
Sbjct: 273 PELPQSL-TFLDVSENIFSGLSELPPNLYYLNASSNE-IRSLCDLP----PSLEELNV 324

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 24/114 (21%)

Query: 206 LMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGI 265
           +  N    LSE+P  P L  L    N I  + D       +L  L++  N  L +LP+  
Sbjct: 284 VSENIFSGLSELP--PNLYYLNASSNEIRSLCD----LPPSLEELNVSNN-KLIELPALP 336

Query: 266 RGLPQEL-----------KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
             L + L           +  + L+ L+++Y   L   P         +E LR+
Sbjct: 337 PRL-ERLIASFNHLAEVPELPQNLKQLHVEYNP-LREFP----DIPESVEDLRM 384

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 21/118 (17%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
            ++    N + SL  +P+   L  L++ GNR+  +        S L+ L +  N  L  L
Sbjct: 204 YKLWAYNNRLTSLPALPS--GLKELIVSGNRLTSLPV----LPSELKELMVSGN-RLTSL 256

Query: 262 PSGIRGL-------------PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVL 306
           P    GL             P+ L  L     +NL+    LS    Q +   +     
Sbjct: 257 PMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 20/118 (16%)

Query: 196 EEWEGAKRVSLMGNGIRSLSEIPTC--PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLR 253
             W  A            + ++  C       L +G + +  + D        +  L + 
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIP 69

Query: 254 INISLRKLPSGIRGL-------------PQELKALEKLRYLNLDYTRFLSIIPHQLIS 298
            N +L  LP+    L             P     L +L   +   T  L  +P  L  
Sbjct: 70  DN-NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPALPSGLCK 125

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 114 EIPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEEGDDHV---KMHDMIREMSLWI 170
           ++P + L   W  E          D + + +   LL  + +       +HD+  +     
Sbjct: 394 KVPTKVLCILWDMETEE-----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448

Query: 171 AC 172
            C
Sbjct: 449 NC 450

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 58/345 (16%), Positives = 109/345 (31%), Gaps = 58/345 (16%)

Query: 209 NGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL 268
           +G+ +++   TC  L  L L  + +++++  +           + +NIS          L
Sbjct: 146 DGLAAIAA--TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203

Query: 269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC----------------- 311
            + +     L+ L L+    L  +   L+    +LE L   G                  
Sbjct: 204 ERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 312 ---------GFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKY-P 361
                    GFW         +      L         LN LS+    S  +   L   P
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRL-------TTLN-LSYATVQSYDLVKLLCQCP 314

Query: 362 KLVSIT-QSVLVKSGVHTSPPFNVLHLA-YMENLQKFELESCNLEEMKIDS--TEEVKKL 417
           KL  +     +  +G+          LA   ++L++  +       M+ +   TE+    
Sbjct: 315 KLQRLWVLDYIEDAGLE--------VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 418 FQSGFRSLNTVSVHYCRKAKDLTWLVFV----QNLKVLRIGDCYDMEEIISVDKLRDISV 473
              G   L +V +++CR+  +   L+ +     N+   R+             +  DI  
Sbjct: 367 VSMGCPKLESV-LYFCRQMTNAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424

Query: 474 IIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCP 518
               EH     L  LS+S     K          K++ + V    
Sbjct: 425 GAIVEH--CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG 467

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 34/160 (21%), Positives = 51/160 (31%), Gaps = 30/160 (18%)

Query: 202 KRVSLMGNGI-----RSLSE-IPTCPRLVTLLLGGNRIE-----EITDGFFQSMSTLRVL 250
           + + +             S  +     L+ L +  NR+E     E+  G  Q  S LRVL
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 251 SLRIN-ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRF----LSIIPHQLISGFSKLEV 305
            L    +S     S    L   L A   LR L+L         +  +   +      LE 
Sbjct: 376 WLADCDVS----DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431

Query: 306 LRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLS 345
           L L+   +     EE        + L         L V+S
Sbjct: 432 LVLYDIYW----SEEM------EDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 202 KRVSLMGNGI-----RSLSE-IPTCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVL 250
           +++SL    +       LS  + T P L  L L  N + +     + +G       L  L
Sbjct: 88  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147

Query: 251 SLRIN-ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRF----LSIIPHQLISGFSKLEV 305
            L    +S     +    L   L+A    + L +         + ++   L     +LE 
Sbjct: 148 QLEYCSLS----AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 306 LRLFGCGF 313
           L+L  CG 
Sbjct: 204 LKLESCGV 211

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 27/115 (23%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + ++   N +  L E+PT   L  L +  N++  + +       +L  L +  N  L  L
Sbjct: 143 EYINADNNQLTMLPELPT--SLEVLSVRNNQLTFLPE----LPESLEALDVSTN-LLESL 195

Query: 262 PSGI--------------------RGLPQELKALEKLRYLNLDYTRFLSIIPHQL 296
           P+                        +P+ + +L+    + L+     S I   L
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 26/136 (19%)

Query: 189 LTEAPK--FEEWEGAKRVSLMGNGI-RSLSEIPTC--PRLVTLLLGGNRIEEITDGFFQS 243
           ++      F  W+  ++ +L G     ++S +  C   +   L L    +  + D     
Sbjct: 22  ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ 81

Query: 244 MSTLRVLSLRINISLRKLPSGIRGLPQEL-----------KALEKLRYLNLDYTRFLSII 292
              + VL +  N +L  LP     L + L           +    L++L++D  + L+++
Sbjct: 82  ---ITVLEITQN-ALISLPELPASL-EYLDACDNRLSTLPELPASLKHLDVDNNQ-LTML 135

Query: 293 PHQLISGFSKLEVLRL 308
           P       + LE +  
Sbjct: 136 PELP----ALLEYINA 147

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 215 SEIPTCPRLVTLLLGGNRIE---EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE 271
                  R+  L L G  +     I      ++  L  L +    +L     G   +P  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNL----VGP--IPPA 96

Query: 272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
           +  L +L YL + +T     IP   +S    L  L       
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNAL 137

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 213 SLSEIPTC--PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQ 270
            L+E+     P L  L +        +    +    L  L L  N  L +        P 
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 271 ELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           +   L+ L   N       S +   L +   +L+ L L
Sbjct: 199 KFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDL 235

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 202 KRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRI----EEITDGFFQSMSTLRVLSLRIN 255
           K +S+      + S  ++   P L TL L  N        I+        TL+VL+LR  
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV 315
             +         L     A  +L+ L+L +               S+L  L L   G   
Sbjct: 212 -GMETPSGVCSAL---AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 316 VTEE 319
           V + 
Sbjct: 268 VPKG 271

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 55/362 (15%), Positives = 111/362 (30%), Gaps = 68/362 (18%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMST----LRVLSLRINIS 257
           +R+ +    +  L++      L TL L  ++    T     S+ T    ++ L +  +  
Sbjct: 120 RRMIVSDLDLDRLAKA-RADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176

Query: 258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGFW 314
             K    +  L Q   +LE    LN   T F  I P     +      L  +++      
Sbjct: 177 SEKDGKWLHELAQHNTSLE---VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233

Query: 315 VVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKS 374
                       +     K     +     S      +      KY  LV   +  L + 
Sbjct: 234 ------------ELVGFFKAAANLEEFCGGSLNEDIGMP----EKYMNLVFPRK--LCRL 275

Query: 375 GVHTSPPFNVLHLA-YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC 433
           G+    P  +  L  +   ++K +L    L       TE+   L      +L  +     
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALL------ETEDHCTLI-QKCPNLEVLETRNV 328

Query: 434 RKAKDLTWLV-FVQNLKVLRIGDCYDMEEIISVD-KLRDISVIIGSEHNFFAQLEYLSIS 491
              + L  L  + + LK LRI    D + +   +  +    +I  ++     +LEY+++ 
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG--CQELEYMAVY 386

Query: 492 WGTNL--KSVYPNPLPFPKLKKIDVC----------------------HCPQLKKLPLNS 527
             +++  +S+         L    +                        C +L++     
Sbjct: 387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 528 SS 529
             
Sbjct: 446 RQ 447

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 202 KRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK 260
             + L GN    +  E+     L  + L  NRI  +++  F +M+ L  L L  N  LR 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRC 92

Query: 261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
           +P            L+ LR L+L     +S++P    +  S L  L +  
Sbjct: 93  IPPRT------FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 215 SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA 274
           S IP       L L    +  ++D  F+ ++ L  L+L  N  L+ L +G+         
Sbjct: 31  SGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV------FDD 81

Query: 275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRL 308
           L +L  L L   + L+ +P  +    ++L+ L L
Sbjct: 82  LTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYL 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	566
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.47
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.44
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.29
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.04
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.02
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.69
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.83

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=4.7e-23  Score=210.99  Aligned_cols=278  Identities=19%  Similarity=0.193  Sum_probs=174.8

Q ss_pred             ccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          197 EWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      ...+++++++.++.+..+|.  +..+++|++|++++|.+..++...|+.+++|++|++++| .++.+|...      +++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV------FQN  115 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHH------hcC
Confidence            45788999999998888876  467899999999999888887756889999999999999 888766443      788


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV  354 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~  354 (566)
                      +++|++|++++| .++.+|.++++++++|++|++++|.+..              .....++.+++|+.|+++.+.....
T Consensus       116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER--------------IEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc--------------cChhhccCCCCCCEEECCCCcCCcc
Confidence            999999999999 7889988756889999999999887754              3445577888888888886543332


Q ss_pred             hccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccc-----------cccccCccCCC
Q 008415          355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTE-----------EVKKLFQSGFR  423 (566)
Q Consensus       355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~-----------~~~~~~~~~l~  423 (566)
                      .     ....++|+.|.+++ ..    .  ..+...++|+.|++++|.+..++.....           .........++
T Consensus       181 ~-----~~~l~~L~~L~l~~-n~----l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~  248 (390)
T 3o6n_A          181 D-----LSLIPSLFHANVSY-NL----L--STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP  248 (390)
T ss_dssp             C-----GGGCTTCSEEECCS-SC----C--SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCT
T ss_pred             c-----cccccccceeeccc-cc----c--cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCC
Confidence            1     22235666666665 21    1  1122334566666655553332211000           00001112344


Q ss_pred             cccEEecccCcCCCCC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCC
Q 008415          424 SLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYP  501 (566)
Q Consensus       424 ~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~  501 (566)
                      +|+.|+++++. +..+ + .+..+++|++|++++|.. +.+             +.....+|+|+.|+++++ .++.++.
T Consensus       249 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~-------------~~~~~~l~~L~~L~L~~n-~l~~~~~  312 (390)
T 3o6n_A          249 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-VAL-------------NLYGQPIPTLKVLDLSHN-HLLHVER  312 (390)
T ss_dssp             TCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCC-CEE-------------ECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred             CccEEECCCCc-CCCcChhHccccccCCEEECCCCcC-ccc-------------CcccCCCCCCCEEECCCC-cceecCc
Confidence            45555554432 2222 1 244445555555544422 111             123455677777777765 4555554


Q ss_pred             CCCCCCCccEEeecCCCCCCCCCC
Q 008415          502 NPLPFPKLKKIDVCHCPQLKKLPL  525 (566)
Q Consensus       502 ~~~~~p~L~~L~i~~C~~L~~lP~  525 (566)
                      ....+++|+.|++.+| .++.+|.
T Consensus       313 ~~~~l~~L~~L~L~~N-~i~~~~~  335 (390)
T 3o6n_A          313 NQPQFDRLENLYLDHN-SIVTLKL  335 (390)
T ss_dssp             GHHHHTTCSEEECCSS-CCCCCCC
T ss_pred             cccccCcCCEEECCCC-ccceeCc
Confidence            4455677777777775 4666663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=1.8e-22  Score=212.50  Aligned_cols=305  Identities=17%  Similarity=0.191  Sum_probs=231.8

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+.+.+..+..+|.. -...++.|++.+|.+..++  .+..+++|++|++++|.+..++...|+++++|++|+|++| .+
T Consensus        15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l   92 (477)
T 2id5_A           15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RL   92 (477)
T ss_dssp             EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cC
Confidence            455566667777652 2368999999999999875  5788999999999999998886555999999999999999 99


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.+|...      ++++++|++|++++| .+..++...+..+++|++|++.+|.+..              .....+..+
T Consensus        93 ~~~~~~~------~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l  151 (477)
T 2id5_A           93 KLIPLGV------FTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY--------------ISHRAFSGL  151 (477)
T ss_dssp             CSCCTTS------STTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE--------------ECTTSSTTC
T ss_pred             CccCccc------ccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce--------------eChhhccCC
Confidence            8888654      789999999999999 7888766559999999999999998765              345678899


Q ss_pred             CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeeccccccccc
Q 008415          339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKL  417 (566)
Q Consensus       339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~  417 (566)
                      ++|+.|+++.+....+..  .....+.+|+.|++.+ +. ........+..+++|+.|++++|. +..++...       
T Consensus       152 ~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~-n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------  220 (477)
T 2id5_A          152 NSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRH-LN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-------  220 (477)
T ss_dssp             TTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEES-CC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-------
T ss_pred             CCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCC-Cc-CcEeChhhcccCcccceeeCCCCccccccCccc-------
Confidence            999999999765443321  1122347899999997 32 233333357788999999999998 77654321       


Q ss_pred             CccCCCcccEEecccCcCCCCCch--hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccc
Q 008415          418 FQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTN  495 (566)
Q Consensus       418 ~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~  495 (566)
                        ....+|++|+++++ .+..++.  +..+++|+.|+|+++.. ..+..            ..+..+++|+.|+|.++ .
T Consensus       221 --~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~------------~~~~~l~~L~~L~L~~n-~  283 (477)
T 2id5_A          221 --LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI-STIEG------------SMLHELLRLQEIQLVGG-Q  283 (477)
T ss_dssp             --TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCC-CEECT------------TSCTTCTTCCEEECCSS-C
T ss_pred             --ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcC-CccCh------------hhccccccCCEEECCCC-c
Confidence              23459999999997 5667763  88899999999998863 33332            34678899999999986 4


Q ss_pred             cccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEE
Q 008415          496 LKSV-YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVI  537 (566)
Q Consensus       496 L~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~  537 (566)
                      ++.+ +.....+++|+.|++++| +++.+|......++.|+.+
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred             cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence            6655 344567899999999996 7998887543323444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.6e-22  Score=203.59  Aligned_cols=291  Identities=18%  Similarity=0.214  Sum_probs=177.5

Q ss_pred             EecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccc
Q 008415          183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP  262 (566)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp  262 (566)
                      ...+..+..++....+.++++|++.+|.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..+|
T Consensus        50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~  126 (347)
T 4fmz_A           50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDIS  126 (347)
T ss_dssp             ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCG
T ss_pred             EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCch
Confidence            33344444455555556666666666666666556666666666666666665542  566666666666666 665544


Q ss_pred             ccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCc
Q 008415          263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLN  342 (566)
Q Consensus       263 ~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  342 (566)
                      .        +.++++|++|++++|..+..++.  +..+++|++|++.+|....                ...+..+++|+
T Consensus       127 ~--------~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~----------------~~~~~~l~~L~  180 (347)
T 4fmz_A          127 P--------LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD----------------VTPIANLTDLY  180 (347)
T ss_dssp             G--------GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC----------------CGGGGGCTTCS
T ss_pred             h--------hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC----------------chhhccCCCCC
Confidence            3        45666666666666654444444  6666666666666665543                11256667777


Q ss_pred             eEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCC
Q 008415          343 VLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGF  422 (566)
Q Consensus       343 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l  422 (566)
                      .|+++.+....+..    .....+|+.|.+.+ +. ..  ....+..+++|+.|++++|.+..++          ....+
T Consensus       181 ~L~l~~n~l~~~~~----~~~l~~L~~L~l~~-n~-l~--~~~~~~~~~~L~~L~l~~n~l~~~~----------~~~~l  242 (347)
T 4fmz_A          181 SLSLNYNQIEDISP----LASLTSLHYFTAYV-NQ-IT--DITPVANMTRLNSLKIGNNKITDLS----------PLANL  242 (347)
T ss_dssp             EEECTTSCCCCCGG----GGGCTTCCEEECCS-SC-CC--CCGGGGGCTTCCEEECCSSCCCCCG----------GGTTC
T ss_pred             EEEccCCccccccc----ccCCCccceeeccc-CC-CC--CCchhhcCCcCCEEEccCCccCCCc----------chhcC
Confidence            77776554333322    22335677777765 32 11  1223666777888888777743322          13467


Q ss_pred             CcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccC-C
Q 008415          423 RSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY-P  501 (566)
Q Consensus       423 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~-~  501 (566)
                      ++|++|++++| .+..++.+..+++|++|++++|. +..+.              .+..+++|+.|++++|. +.... .
T Consensus       243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~L~~n~-l~~~~~~  305 (347)
T 4fmz_A          243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS--------------VLNNLSQLNSLFLNNNQ-LGNEDME  305 (347)
T ss_dssp             TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG--------------GGGGCTTCSEEECCSSC-CCGGGHH
T ss_pred             CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh--------------hhcCCCCCCEEECcCCc-CCCcChh
Confidence            78888888876 56667777788888888888774 33221              35678888888888875 43322 2


Q ss_pred             CCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEech
Q 008415          502 NPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE  540 (566)
Q Consensus       502 ~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~  540 (566)
                      ....+++|+.|++++|+ ++.+|. +.. ++.|+.++..
T Consensus       306 ~l~~l~~L~~L~L~~n~-l~~~~~-~~~-l~~L~~L~l~  341 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNH-ITDIRP-LAS-LSKMDSADFA  341 (347)
T ss_dssp             HHHTCTTCSEEECCSSS-CCCCGG-GGG-CTTCSEESSS
T ss_pred             HhhccccCCEEEccCCc-cccccC-hhh-hhccceeehh
Confidence            23557889999998875 777655 333 3555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.1e-22  Score=216.28  Aligned_cols=278  Identities=19%  Similarity=0.194  Sum_probs=157.5

Q ss_pred             cccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          198 WEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ..+++.+++.++.+..+|.  +..+++|++|++++|.+..++...|+.+++|++|+|++| .++.+|+..      ++++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV------FQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH------HcCC
Confidence            3566777777777766664  356677777777777777666544777777777777777 676665433      6777


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ  355 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~  355 (566)
                      ++|++|++++| .++.+|.++++.+++|++|++++|.+..              ..+..++.+++|+.|+++.+.....+
T Consensus       123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER--------------IEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC--------------CChhhhhcCCcCcEEECcCCCCCCcC
Confidence            77777777777 6777776645777777777777776644              23445666777777777654332221


Q ss_pred             ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccc-----------cccccCccCCCc
Q 008415          356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTE-----------EVKKLFQSGFRS  424 (566)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~-----------~~~~~~~~~l~~  424 (566)
                           ....++|+.|.+++ +.    +  ..+...++|+.|++++|.+..++.....           ..+......+++
T Consensus       188 -----~~~l~~L~~L~l~~-n~----l--~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~  255 (597)
T 3oja_B          188 -----LSLIPSLFHANVSY-NL----L--STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG  255 (597)
T ss_dssp             -----GGGCTTCSEEECCS-SC----C--SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred             -----hhhhhhhhhhhccc-Cc----c--ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCC
Confidence                 12224555555554 11    0  1122233445555544442222110000           000011234555


Q ss_pred             ccEEecccCcCCCCC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCC
Q 008415          425 LNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN  502 (566)
Q Consensus       425 L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~  502 (566)
                      |+.|+|+++. +..+ | .++.+++|+.|+|++|.. ..+             |.....+|+|+.|+|+++ .+..++..
T Consensus       256 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l-------------~~~~~~l~~L~~L~Ls~N-~l~~i~~~  319 (597)
T 3oja_B          256 LVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-VAL-------------NLYGQPIPTLKVLDLSHN-HLLHVERN  319 (597)
T ss_dssp             CSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC-CEE-------------ECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred             CCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC-CCC-------------CcccccCCCCcEEECCCC-CCCccCcc
Confidence            6666665543 3222 2 255556666666655432 222             224456777888888775 35566655


Q ss_pred             CCCCCCccEEeecCCCCCCCCCCC
Q 008415          503 PLPFPKLKKIDVCHCPQLKKLPLN  526 (566)
Q Consensus       503 ~~~~p~L~~L~i~~C~~L~~lP~~  526 (566)
                      ...+++|+.|++++| .++.+|..
T Consensus       320 ~~~l~~L~~L~L~~N-~l~~~~~~  342 (597)
T 3oja_B          320 QPQFDRLENLYLDHN-SIVTLKLS  342 (597)
T ss_dssp             HHHHTTCSEEECCSS-CCCCCCCC
T ss_pred             cccCCCCCEEECCCC-CCCCcChh
Confidence            556778888888875 46666643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=2.8e-22  Score=205.19  Aligned_cols=295  Identities=17%  Similarity=0.192  Sum_probs=208.1

Q ss_pred             EEEecCCccccCCC--ccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCC
Q 008415          181 FLVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI  256 (566)
Q Consensus       181 ~~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~  256 (566)
                      .+...+..+..+|.  ...+.++++|++.++.+..++  .+..+++|++|++++|.+..++...++++++|++|++++| 
T Consensus        49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-  127 (390)
T 3o6n_A           49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-  127 (390)
T ss_dssp             EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-
Confidence            34445555666665  345689999999999998875  4688999999999999999888777899999999999999 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc-ccccccccc-cCccchHhh
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV-TEEEGNVLC-EDAEPLMKE  334 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~  334 (566)
                      .++.+|..+      ++++++|++|++++| .++.++...++.+++|++|++++|.+... ......... .-....+..
T Consensus       128 ~l~~l~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          128 DLSSLPRGI------FHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCCCCCTTT------TTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             ccCcCCHHH------hcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence            998888665      689999999999999 78888766699999999999999987641 000000000 000001111


Q ss_pred             hcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccc
Q 008415          335 LLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEV  414 (566)
Q Consensus       335 l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~  414 (566)
                      +....+|+.|+++.+....++.     ....+|+.|++++ +. ..  ....+..+++|+.|++++|.+..+...     
T Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~-n~-l~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----  266 (390)
T 3o6n_A          201 LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQH-NN-LT--DTAWLLNYPGLVEVDLSYNELEKIMYH-----  266 (390)
T ss_dssp             EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCS-SC-CC--CCGGGGGCTTCSEEECCSSCCCEEESG-----
T ss_pred             cCCCCcceEEECCCCeeeeccc-----cccccccEEECCC-CC-Cc--ccHHHcCCCCccEEECCCCcCCCcChh-----
Confidence            1222334444444332222111     1125788888886 32 12  224577889999999999985544322     


Q ss_pred             cccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415          415 KKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       415 ~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                         ....+++|++|+++++ .+..++. ...+++|++|++++|. +..++             ..+..+++|+.|++.++
T Consensus       267 ---~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          267 ---PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVE-------------RNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             ---GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCG-------------GGHHHHTTCSEEECCSS
T ss_pred             ---HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecC-------------ccccccCcCCEEECCCC
Confidence               1246899999999996 5666655 6679999999999985 33333             35678999999999987


Q ss_pred             ccccccCCCCCCCCCccEEeecCCC
Q 008415          494 TNLKSVYPNPLPFPKLKKIDVCHCP  518 (566)
Q Consensus       494 ~~L~~l~~~~~~~p~L~~L~i~~C~  518 (566)
                      + ++.++  ...+++|+.|++.+++
T Consensus       329 ~-i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          329 S-IVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             C-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             c-cceeC--chhhccCCEEEcCCCC
Confidence            5 66665  5678999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=3.4e-22  Score=201.19  Aligned_cols=284  Identities=19%  Similarity=0.182  Sum_probs=222.8

Q ss_pred             CccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          194 KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       194 ~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      ....+++++++++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .++.+|.        ++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~~--------~~  107 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDISA--------LQ  107 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--------GT
T ss_pred             cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCchH--------Hc
Confidence            345668999999999999999989999999999999999998887  899999999999999 8887652        68


Q ss_pred             ccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccc
Q 008415          274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG  353 (566)
Q Consensus       274 ~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~  353 (566)
                      ++++|++|++++| .+..+|.  +..+++|++|++.+|....               .+..+..+++|+.|+++.+....
T Consensus       108 ~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~---------------~~~~~~~l~~L~~L~l~~~~~~~  169 (347)
T 4fmz_A          108 NLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLS---------------DLSPLSNMTGLNYLTVTESKVKD  169 (347)
T ss_dssp             TCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCC---------------CCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcc---------------cccchhhCCCCcEEEecCCCcCC
Confidence            9999999999999 8999988  9999999999999997654               34458899999999999765444


Q ss_pred             hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccC
Q 008415          354 VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYC  433 (566)
Q Consensus       354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c  433 (566)
                      ...    ...+++|+.|++++ +. ..  ....+..+++|+.|++.+|.+..++          ....+++|++|++++|
T Consensus       170 ~~~----~~~l~~L~~L~l~~-n~-l~--~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          170 VTP----IANLTDLYSLSLNY-NQ-IE--DISPLASLTSLHYFTAYVNQITDIT----------PVANMTRLNSLKIGNN  231 (347)
T ss_dssp             CGG----GGGCTTCSEEECTT-SC-CC--CCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECCSS
T ss_pred             chh----hccCCCCCEEEccC-Cc-cc--ccccccCCCccceeecccCCCCCCc----------hhhcCCcCCEEEccCC
Confidence            433    33457899999997 43 12  2334778899999999998844321          1357899999999997


Q ss_pred             cCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEe
Q 008415          434 RKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKID  513 (566)
Q Consensus       434 ~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~  513 (566)
                       .+..++.+..+++|++|++++|.. ..+.              .+..+++|+.|+++++ .++.++ ....+++|+.|+
T Consensus       232 -~l~~~~~~~~l~~L~~L~l~~n~l-~~~~--------------~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~  293 (347)
T 4fmz_A          232 -KITDLSPLANLSQLTWLEIGTNQI-SDIN--------------AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLF  293 (347)
T ss_dssp             -CCCCCGGGTTCTTCCEEECCSSCC-CCCG--------------GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEE
T ss_pred             -ccCCCcchhcCCCCCEEECCCCcc-CCCh--------------hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEE
Confidence             577777799999999999999843 3332              3668899999999987 466664 345689999999


Q ss_pred             ecCCCCCCCCC-CCCccccCCcEEEechhhhh
Q 008415          514 VCHCPQLKKLP-LNSSSAKERRVVIEGEKKWW  544 (566)
Q Consensus       514 i~~C~~L~~lP-~~~~~~l~~L~i~~~~~~~~  544 (566)
                      +++| .++..+ ..+.. ++.|+.++.....+
T Consensus       294 L~~n-~l~~~~~~~l~~-l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          294 LNNN-QLGNEDMEVIGG-LTNLTTLFLSQNHI  323 (347)
T ss_dssp             CCSS-CCCGGGHHHHHT-CTTCSEEECCSSSC
T ss_pred             CcCC-cCCCcChhHhhc-cccCCEEEccCCcc
Confidence            9998 465543 33333 35666665554433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=5.5e-22  Score=197.70  Aligned_cols=241  Identities=20%  Similarity=0.244  Sum_probs=177.1

Q ss_pred             CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhc
Q 008415          219 TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS  298 (566)
Q Consensus       219 ~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~  298 (566)
                      ...+++.|+++++.+..+|.. ++++++|++|+|++| .++.+|..       ++++++|++|++++| .++.+|.. ++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~-------~~~l~~L~~L~Ls~n-~l~~lp~~-l~  147 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDT-------MQQFAGLETLTLARN-PLRALPAS-IA  147 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSC-------GGGGTTCSEEEEESC-CCCCCCGG-GG
T ss_pred             cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHH-------HhccCCCCEEECCCC-ccccCcHH-Hh
Confidence            346788888888888888887 677888999999888 77665544       588888999999888 78888887 88


Q ss_pred             CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCC
Q 008415          299 GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT  378 (566)
Q Consensus       299 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  378 (566)
                      ++++|++|++++|....              ..+..+.                                ...+.+    
T Consensus       148 ~l~~L~~L~L~~n~~~~--------------~~p~~~~--------------------------------~~~~~~----  177 (328)
T 4fcg_A          148 SLNRLRELSIRACPELT--------------ELPEPLA--------------------------------STDASG----  177 (328)
T ss_dssp             GCTTCCEEEEEEETTCC--------------CCCSCSE--------------------------------EEC-CC----
T ss_pred             cCcCCCEEECCCCCCcc--------------ccChhHh--------------------------------hccchh----
Confidence            88888888888876543              1111111                                001111    


Q ss_pred             CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCc-hhhccCCcceEeEeccc
Q 008415          379 SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT-WLVFVQNLKVLRIGDCY  457 (566)
Q Consensus       379 ~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~  457 (566)
                             .+..+++|+.|++++|.+..++.         ....+++|++|+|+++. +..+| .++.+++|++|++++|.
T Consensus       178 -------~~~~l~~L~~L~L~~n~l~~lp~---------~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          178 -------EHQGLVNLQSLRLEWTGIRSLPA---------SIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             -------CEEESTTCCEEEEEEECCCCCCG---------GGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCT
T ss_pred             -------hhccCCCCCEEECcCCCcCcchH---------hhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCc
Confidence                   24456778888888777444431         12467788888888864 44554 48888999999998887


Q ss_pred             CcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEE
Q 008415          458 DMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVI  537 (566)
Q Consensus       458 ~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~  537 (566)
                      ....++             ..+..+++|+.|+|.+|..+..++.....+++|+.|++++|+.+..+|..+..+ +.|+++
T Consensus       241 ~~~~~p-------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l  306 (328)
T 4fcg_A          241 ALRNYP-------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCII  306 (328)
T ss_dssp             TCCBCC-------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEE
T ss_pred             chhhhH-------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEE
Confidence            766543             367788999999999998888888878889999999999999999999888776 889999


Q ss_pred             echhhhhhcccccc
Q 008415          538 EGEKKWWEELQWED  551 (566)
Q Consensus       538 ~~~~~~~~~l~~~~  551 (566)
                      .++......+.+..
T Consensus       307 ~l~~~~~~~l~~~~  320 (328)
T 4fcg_A          307 LVPPHLQAQLDQHR  320 (328)
T ss_dssp             ECCGGGSCC-----
T ss_pred             eCCHHHHHHHhhhh
Confidence            99888777766553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=3.6e-21  Score=201.21  Aligned_cols=313  Identities=17%  Similarity=0.178  Sum_probs=202.4

Q ss_pred             ceEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCC
Q 008415          179 QNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRIN  255 (566)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~  255 (566)
                      ...+.+.+.++..+|.  -..++++|++++|.+..++  .+..+++|++|++++|.+. .++...|+++++|++|+|++|
T Consensus        12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            3445666667777776  3378999999999998863  4688999999999999775 666656899999999999999


Q ss_pred             CCCccccccccccCcchhccccCcEecccCcccCCc-cc-hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHh
Q 008415          256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-IP-HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMK  333 (566)
Q Consensus       256 ~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-lP-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  333 (566)
                       .+..++      |..++++++|++|++++| .++. +| ...++.+++|++|++++|.+..              ..+.
T Consensus        90 -~l~~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~  147 (455)
T 3v47_A           90 -QFLQLE------TGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--------------IQPA  147 (455)
T ss_dssp             -TTCEEC------TTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCS--------------CCCC
T ss_pred             -ccCccC------hhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCc--------------cCcc
Confidence             887553      344788899999999998 6765 22 2337888999999999887754              1222


Q ss_pred             h-hcCCCCCceEEEEEcCccchh--ccccC------------------------------CcccccceEEEEecccCCCC
Q 008415          334 E-LLGSKHLNVLSWTFRSSLGVQ--NFLKY------------------------------PKLVSITQSVLVKSGVHTSP  380 (566)
Q Consensus       334 ~-l~~L~~L~~L~i~~~~~~~~~--~~~~~------------------------------~~~~~~L~~L~l~~~~~~~~  380 (566)
                      . ++++++|+.|+++.+......  .+...                              .....+|+.|++++ +.-..
T Consensus       148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~  226 (455)
T 3v47_A          148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKE  226 (455)
T ss_dssp             GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCH
T ss_pred             cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC-Ccccc
Confidence            2 667778888877754322110  00000                              00113455555554 21000


Q ss_pred             -------------Ceee-----------------------eccc--cccCcceEEEeccccceeeecccccccccCccCC
Q 008415          381 -------------PFNV-----------------------LHLA--YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGF  422 (566)
Q Consensus       381 -------------~~~~-----------------------~~l~--~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l  422 (566)
                                   ....                       ..+.  ..++|+.|++++|.+..+..        .....+
T Consensus       227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l  298 (455)
T 3v47_A          227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK--------SVFSHF  298 (455)
T ss_dssp             HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT--------TTTTTC
T ss_pred             cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch--------hhcccC
Confidence                         0000                       0000  11456666666655322211        112456


Q ss_pred             CcccEEecccCcCCCCC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccccc-
Q 008415          423 RSLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-  499 (566)
Q Consensus       423 ~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-  499 (566)
                      ++|+.|+++++. +..+ + .++.+++|++|++++|.. ..+.            +..+..+++|+.|+|+++. ++.+ 
T Consensus       299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~------------~~~~~~l~~L~~L~Ls~N~-l~~~~  363 (455)
T 3v47_A          299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFL-GSID------------SRMFENLDKLEVLDLSYNH-IRALG  363 (455)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC-CEEC------------GGGGTTCTTCCEEECCSSC-CCEEC
T ss_pred             CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCcc-CCcC------------hhHhcCcccCCEEECCCCc-ccccC
Confidence            788888888764 4433 3 377788888888888754 3332            1356788999999999874 6665 


Q ss_pred             CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEech
Q 008415          500 YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGE  540 (566)
Q Consensus       500 ~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~  540 (566)
                      +.....+++|++|++.+| +++.+|......++.|+.++..
T Consensus       364 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          364 DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEcc
Confidence            455677899999999995 7999887654334566555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=7e-22  Score=213.53  Aligned_cols=295  Identities=17%  Similarity=0.191  Sum_probs=209.3

Q ss_pred             EEEecCCccccCCC--ccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCC
Q 008415          181 FLVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI  256 (566)
Q Consensus       181 ~~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~  256 (566)
                      .+...+..+..+|.  ...+.+++.|++.+|.+..++  .+..+++|++|++++|.+..+|+..|+++++|++|+|++| 
T Consensus        55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-  133 (597)
T 3oja_B           55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-  133 (597)
T ss_dssp             EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-
Confidence            34444545555554  345679999999999998876  5789999999999999999998887899999999999999 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc-ccccccccc-cCccchHhh
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV-TEEEGNVLC-EDAEPLMKE  334 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~  334 (566)
                      .++.+|..+      ++++++|++|++++| .++.+|+..++.+++|++|++++|.+... ......... .-....+..
T Consensus       134 ~l~~l~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          134 DLSSLPRGI------FHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCCCCCTTT------TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCCCHHH------hccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence            998888765      789999999999999 78888775599999999999999987641 000000000 000001111


Q ss_pred             hcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccc
Q 008415          335 LLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEV  414 (566)
Q Consensus       335 l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~  414 (566)
                      +....+|+.|+++.+....+..     ....+|+.|.+++ +. ..  ....+..+++|+.|++++|.+..++..     
T Consensus       207 l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~-n~-l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~-----  272 (597)
T 3oja_B          207 LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQH-NN-LT--DTAWLLNYPGLVEVDLSYNELEKIMYH-----  272 (597)
T ss_dssp             EECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCS-SC-CC--CCGGGGGCTTCSEEECCSSCCCEEESG-----
T ss_pred             ccCCchhheeeccCCccccccc-----ccCCCCCEEECCC-CC-CC--CChhhccCCCCCEEECCCCccCCCCHH-----
Confidence            2223344444444332222111     1124688888886 42 11  234578889999999999985544322     


Q ss_pred             cccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415          415 KKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       415 ~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                         ....+++|+.|+|+++ .+..+|. .+.+|+|+.|+|++|... .++             ..+..+++|+.|+|+++
T Consensus       273 ---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~-------------~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          273 ---PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE-------------RNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             ---GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCG-------------GGHHHHTTCSEEECCSS
T ss_pred             ---HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccC-------------cccccCCCCCEEECCCC
Confidence               2246899999999996 5666655 667999999999998643 333             35678999999999997


Q ss_pred             ccccccCCCCCCCCCccEEeecCCC
Q 008415          494 TNLKSVYPNPLPFPKLKKIDVCHCP  518 (566)
Q Consensus       494 ~~L~~l~~~~~~~p~L~~L~i~~C~  518 (566)
                      . +..++  ...+++|+.|++.+++
T Consensus       335 ~-l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          335 S-IVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             C-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             C-CCCcC--hhhcCCCCEEEeeCCC
Confidence            5 66654  5678999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=3.3e-20  Score=199.63  Aligned_cols=129  Identities=26%  Similarity=0.326  Sum_probs=75.0

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +.+.+.++..+|.. -...+++|++++|.+..++  .+..+++|++|++++|.+..++...|+++++|++|+|++| .++
T Consensus        12 ~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~   89 (570)
T 2z63_A           12 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ   89 (570)
T ss_dssp             EECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred             EEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCC
Confidence            34444444444431 1245666666666655543  3455566666666666555555444555566666666655 555


Q ss_pred             ccccc-c----------------cccCc-chhccccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCCCCc
Q 008415          260 KLPSG-I----------------RGLPQ-ELKALEKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       260 ~lp~~-i----------------~~LP~-~i~~L~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      .+|.. +                ..+|. .++++++|++|++++| .++.  +|.. ++++++|++|++++|.+.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence            44421 1                12222 3677888888888887 5664  5666 788888888888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=3.7e-20  Score=193.98  Aligned_cols=283  Identities=15%  Similarity=0.180  Sum_probs=132.3

Q ss_pred             cCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc
Q 008415          185 AGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG  264 (566)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~  264 (566)
                      .+..+..++....+.++++|++++|.+..++.+..+++|++|++++|.+..++.  ++++++|++|++++| .++.+|. 
T Consensus        54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-  129 (466)
T 1o6v_A           54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-  129 (466)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred             CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-
Confidence            333444455555566677777776666666556666666666666666665554  566666666666666 6655543 


Q ss_pred             ccccCcchhccccCcEecccCcccCCccch--------------------hhhcCCCCCcEEEecCCCCcccc-----cc
Q 008415          265 IRGLPQELKALEKLRYLNLDYTRFLSIIPH--------------------QLISGFSKLEVLRLFGCGFWVVT-----EE  319 (566)
Q Consensus       265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~--------------------~~i~~L~~L~~L~l~~~~~~~~~-----~~  319 (566)
                             ++++++|++|++++| .+..+|.                    . ++++++|++|++++|......     ..
T Consensus       130 -------~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~  200 (466)
T 1o6v_A          130 -------LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTN  200 (466)
T ss_dssp             -------GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             -------HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCC
Confidence                   233333333333333 2222221                    1 445555556666555443200     00


Q ss_pred             cc--cccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEE
Q 008415          320 EG--NVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFE  397 (566)
Q Consensus       320 ~~--~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~  397 (566)
                      +.  ++... .......++.+++|+.|+++.+....++.    ...+++|+.|++++ +.- .  ....+..+++|+.|+
T Consensus       201 L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~-n~l-~--~~~~~~~l~~L~~L~  271 (466)
T 1o6v_A          201 LESLIATNN-QISDITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLAN-NQI-S--NLAPLSGLTKLTELK  271 (466)
T ss_dssp             CSEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCS-SCC-C--CCGGGTTCTTCSEEE
T ss_pred             CCEEEecCC-cccccccccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCC-Ccc-c--cchhhhcCCCCCEEE
Confidence            00  00000 00000113344444444444332222211    11224455555554 211 1  111244455555555


Q ss_pred             EeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCC
Q 008415          398 LESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGS  477 (566)
Q Consensus       398 l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~  477 (566)
                      +++|.+..++          ....+++|+.|++++| .+..++.++.+++|+.|++++|... .+.              
T Consensus       272 l~~n~l~~~~----------~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~~--------------  325 (466)
T 1o6v_A          272 LGANQISNIS----------PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNIS-DIS--------------  325 (466)
T ss_dssp             CCSSCCCCCG----------GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCS-CCG--------------
T ss_pred             CCCCccCccc----------cccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCC-Cch--------------
Confidence            5555522211          1234566666666664 3555555666666666666665322 111              


Q ss_pred             CCccccccceeeccccccccccCCCCCCCCCccEEeecCC
Q 008415          478 EHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHC  517 (566)
Q Consensus       478 ~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C  517 (566)
                      .+..+++|+.|++.++ .++.++ ....+++|+.|++.+|
T Consensus       326 ~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          326 PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN  363 (466)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred             hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC
Confidence            1345556666666554 243332 2334556666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=2.6e-20  Score=202.06  Aligned_cols=333  Identities=16%  Similarity=0.064  Sum_probs=182.5

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+.+.+.++..+|..- ...+++|++++|.+..++  .+..+++|++|++++|.+..+++..|+++++|++|+|++| .+
T Consensus        16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l   93 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PL   93 (606)
T ss_dssp             EEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred             eEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cc
Confidence            4555566666666422 257899999999888874  4678889999999998888775555888999999999988 87


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc-cc------ccc--cccccC-c
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV-TE------EEG--NVLCED-A  328 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~-~~------~~~--~~~~~~-~  328 (566)
                      ..+++      ..++++++|++|++++| .++.++...++++++|++|++++|.+... ..      .+.  ++.... .
T Consensus        94 ~~~~~------~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A           94 IFMAE------TALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             SEECT------TTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             cccCh------hhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence            75533      33677777777777777 67776433377777777777777765431 00      000  000000 1


Q ss_pred             cchHhhhcCCCCCc--eEEEEEcCccchhccccCCcccc-----------------------------------------
Q 008415          329 EPLMKELLGSKHLN--VLSWTFRSSLGVQNFLKYPKLVS-----------------------------------------  365 (566)
Q Consensus       329 ~~~~~~l~~L~~L~--~L~i~~~~~~~~~~~~~~~~~~~-----------------------------------------  365 (566)
                      ...+..++.+++|+  .|++..+......   .......                                         
T Consensus       167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i  243 (606)
T 3t6q_A          167 YLSKEDMSSLQQATNLSLNLNGNDIAGIE---PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI  243 (606)
T ss_dssp             EECHHHHHTTTTCCSEEEECTTCCCCEEC---TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred             ccChhhhhhhcccceeEEecCCCccCccC---hhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence            12244566666666  3333322211110   0000001                                         


Q ss_pred             -----------cceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415          366 -----------ITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR  434 (566)
Q Consensus       366 -----------~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  434 (566)
                                 .++.|++++ + .........+..+++|+.|++++|.+..+|.         ....+++|++|+++++.
T Consensus       244 ~~~~~~~l~~~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~---------~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          244 SPAVFEGLCEMSVESINLQK-H-YFFNISSNTFHCFSGLQELDLTATHLSELPS---------GLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             CGGGGGGGGGSEEEEEECTT-C-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCS---------SCCSCTTCCEEECTTCC
T ss_pred             ChhHhchhhcCceeEEEeec-C-ccCccCHHHhccccCCCEEeccCCccCCCCh---------hhcccccCCEEECccCC
Confidence                       344444443 1 1111212235666777788877777444432         12345666666666653


Q ss_pred             CCCCC-c-hhhccCCcceEeEecccCcccccccccccc-------------cc-cccCCCCccccccceeeccccccccc
Q 008415          435 KAKDL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRD-------------IS-VIIGSEHNFFAQLEYLSISWGTNLKS  498 (566)
Q Consensus       435 ~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~-------------~~-~~l~~~~~~f~~L~~L~L~~~~~L~~  498 (566)
                       +..+ + .++.+++|++|++++|.....++...+...             .. ...+..+..+++|+.|++.++. +..
T Consensus       313 -l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~  390 (606)
T 3t6q_A          313 -FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLS  390 (606)
T ss_dssp             -CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEE
T ss_pred             -cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCc
Confidence             3332 2 255666666666666543322221100000             00 0012345667777777777754 333


Q ss_pred             c-CCCCCCCCCccEEeecCCCCCCC-CCCC-CccccCCcEEEech
Q 008415          499 V-YPNPLPFPKLKKIDVCHCPQLKK-LPLN-SSSAKERRVVIEGE  540 (566)
Q Consensus       499 l-~~~~~~~p~L~~L~i~~C~~L~~-lP~~-~~~~l~~L~i~~~~  540 (566)
                      + +.....+++|+.|++.+|. ++. .|.. +.. ++.|+.++..
T Consensus       391 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~  433 (606)
T 3t6q_A          391 LKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQN-LHLLKVLNLS  433 (606)
T ss_dssp             ECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTT-CTTCCEEECT
T ss_pred             CCHHHhcCCccCCeEECCCCc-CCCcccchhhhC-cccCCEEECC
Confidence            3 3344567788888888764 443 3433 333 3555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=3.3e-20  Score=194.35  Aligned_cols=289  Identities=16%  Similarity=0.184  Sum_probs=186.9

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .+.+++.+++.++.+..++.+..+++|++|++++|.+..++.  ++++++|++|++++| .+..+|.        +++++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--------~~~l~  112 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--------LANLT  112 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--------GTTCT
T ss_pred             HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--------hcCCC
Confidence            357899999999999999988999999999999999998886  899999999999999 8877654        68999


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN  356 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~  356 (566)
                      +|++|++++| .++.+|.  ++++++|++|++++|.+..                +..++.+++|+.|++... ......
T Consensus       113 ~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------~~~~~~l~~L~~L~l~~~-~~~~~~  172 (466)
T 1o6v_A          113 NLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISD----------------ISALSGLTSLQQLSFGNQ-VTDLKP  172 (466)
T ss_dssp             TCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEEEECC----------------CGGGTTCTTCSEEEEEES-CCCCGG
T ss_pred             CCCEEECCCC-CCCCChH--HcCCCCCCEEECCCCccCC----------------ChhhccCCcccEeecCCc-ccCchh
Confidence            9999999999 8999987  9999999999999987653                234677777777777532 111111


Q ss_pred             cccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCC
Q 008415          357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKA  436 (566)
Q Consensus       357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l  436 (566)
                          ...+++|+.|++++ +. ..  ....+..+++|+.|++++|.+..++          +...+++|+.|++++| .+
T Consensus       173 ----~~~l~~L~~L~l~~-n~-l~--~~~~l~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n-~l  233 (466)
T 1o6v_A          173 ----LANLTTLERLDISS-NK-VS--DISVLAKLTNLESLIATNNQISDIT----------PLGILTNLDELSLNGN-QL  233 (466)
T ss_dssp             ----GTTCTTCCEEECCS-SC-CC--CCGGGGGCTTCSEEECCSSCCCCCG----------GGGGCTTCCEEECCSS-CC
T ss_pred             ----hccCCCCCEEECcC-Cc-CC--CChhhccCCCCCEEEecCCcccccc----------cccccCCCCEEECCCC-Cc
Confidence                22335677777765 32 11  1233556667777777666632211          1123455555555553 34


Q ss_pred             CCCchhhccCCcceEeEecccCccccccccccccc------c---cccCCCCccccccceeeccccccccccCCCCCCCC
Q 008415          437 KDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDI------S---VIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFP  507 (566)
Q Consensus       437 ~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~------~---~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p  507 (566)
                      ..++.+..+++|+.|++++|.... +.........      .   ..++ .+..+++|+.|++.++. ++.++. ...++
T Consensus       234 ~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~  309 (466)
T 1o6v_A          234 KDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ-LEDISP-ISNLK  309 (466)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CSCCGG-GGGCT
T ss_pred             ccchhhhcCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCCc-ccCchh-hcCCC
Confidence            444444455555555555443211 1100000000      0   0011 24567788888887753 555443 45678


Q ss_pred             CccEEeecCCCCCCCCCCCCccccCCcEEEechhh
Q 008415          508 KLKKIDVCHCPQLKKLPLNSSSAKERRVVIEGEKK  542 (566)
Q Consensus       508 ~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~~~  542 (566)
                      +|+.|++++| +++.++. +.. ++.|+.++....
T Consensus       310 ~L~~L~L~~n-~l~~~~~-~~~-l~~L~~L~l~~n  341 (466)
T 1o6v_A          310 NLTYLTLYFN-NISDISP-VSS-LTKLQRLFFYNN  341 (466)
T ss_dssp             TCSEEECCSS-CCSCCGG-GGG-CTTCCEEECCSS
T ss_pred             CCCEEECcCC-cCCCchh-hcc-CccCCEeECCCC
Confidence            8888988887 5666554 222 355655555433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=6.5e-20  Score=196.88  Aligned_cols=122  Identities=26%  Similarity=0.344  Sum_probs=99.9

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      ..+...+..+..+|..- ..++++|++++|.+..++  .+..+++|++|++++|.+..+++..|+++++|++|+|++| .
T Consensus        34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~  111 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-R  111 (562)
T ss_dssp             CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred             cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-c
Confidence            45666677777777532 378999999999999886  5789999999999999999886666899999999999999 8


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccc--hhhhcCCCCCcEEEecCCCCc
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIP--HQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP--~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      ++.+|.       .  .+++|++|++++| .++.+|  .. ++++++|++|++++|.+.
T Consensus       112 l~~lp~-------~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          112 LQNISC-------C--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCEECS-------C--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCC
T ss_pred             CCccCc-------c--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCccc
Confidence            987764       2  6888999999988 787765  44 888899999988887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=5.2e-20  Score=202.41  Aligned_cols=247  Identities=15%  Similarity=0.142  Sum_probs=165.3

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      ..+.+.+..+..+|..- ..++++|++++|.+..++.  +..+++|++|++++|.+..+++..|+++++|++|+|++| .
T Consensus         7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred             CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence            34566666677777432 3789999999999988764  688999999999999998887767999999999999999 9


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG  337 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (566)
                      ++.+|...      ++++++|++|++++| .++.+|...++++++|++|++++|....              ..+..+++
T Consensus        85 l~~l~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~  143 (680)
T 1ziw_A           85 LSQLSDKT------FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS--------------TKLGTQVQ  143 (680)
T ss_dssp             CCCCCTTT------TTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC--------------CCCCSSSC
T ss_pred             cCccChhh------hccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc--------------cCchhhcc
Confidence            98877643      799999999999999 7888886559999999999999998765              34455778


Q ss_pred             CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccc---------------------------
Q 008415          338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYM---------------------------  390 (566)
Q Consensus       338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~---------------------------  390 (566)
                      +++|+.|+++.+................+|+.|++++ +. ........+..+                           
T Consensus       144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~  221 (680)
T 1ziw_A          144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS-NQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN  221 (680)
T ss_dssp             CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT-CC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred             cccCCEEEccCCcccccCHHHhhccccccccEEECCC-Cc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence            8889988888654332211100011125677777776 32 111111112222                           


Q ss_pred             cCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC-c-hhhccCCcceEeEecccC
Q 008415          391 ENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGDCYD  458 (566)
Q Consensus       391 ~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~  458 (566)
                      ++|+.|++++|.+..+...      +......++|+.|+++++. +..+ + .++.+++|++|+++++..
T Consensus       222 ~~L~~L~L~~n~l~~~~~~------~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNT------TFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             SCCCEEECTTSCCCEECTT------TTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             ccccEEEccCCcccccChh------HhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCcc
Confidence            4455555555553222111      1111111347777777753 3332 2 266677777777776643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=9.7e-20  Score=197.50  Aligned_cols=129  Identities=22%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +.+.+.++..+|..- ..++++|++++|.+..++.  +..+++|++|++++|.+..+++..|+++++|++|+|++| .++
T Consensus        16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~   93 (606)
T 3vq2_A           16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQ   93 (606)
T ss_dssp             EECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred             eEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccc
Confidence            444555555555421 2566667776666666543  456666666666666666654444666666666666666 565


Q ss_pred             cc-cccc----------------cccC-cchhccccCcEecccCcccCC--ccchhhhcCCCCCcEEEecCCCCc
Q 008415          260 KL-PSGI----------------RGLP-QELKALEKLRYLNLDYTRFLS--IIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       260 ~l-p~~i----------------~~LP-~~i~~L~~L~~L~L~~~~~l~--~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      .+ |..+                ..+| ..++++++|++|++++| .+.  .+|.. ++++++|++|++++|.+.
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred             ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce
Confidence            55 3322                1122 34677777777777777 555  35665 777777777777777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=5.7e-20  Score=193.30  Aligned_cols=291  Identities=17%  Similarity=0.185  Sum_probs=218.9

Q ss_pred             ccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      -+.+...++.+..+|.. -.+++++|++++|.+..++...|.++++|++|+|++| .++.++      |..++++++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~------~~~~~~l~~L~~   84 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVE------PGAFNNLFNLRT   84 (477)
T ss_dssp             TTEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEEC------TTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeC------hhhhhCCccCCE
Confidence            35677777888888753 3479999999999999887666999999999999999 888664      344799999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccC
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKY  360 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~  360 (566)
                      |++++| .++.+|.++++++++|++|++++|.+..              .....+..+++|+.|+++.+......  ...
T Consensus        85 L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~  147 (477)
T 2id5_A           85 LGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVI--------------LLDYMFQDLYNLKSLEVGDNDLVYIS--HRA  147 (477)
T ss_dssp             EECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCE--------------ECTTTTTTCTTCCEEEECCTTCCEEC--TTS
T ss_pred             EECCCC-cCCccCcccccCCCCCCEEECCCCcccc--------------CChhHccccccCCEEECCCCccceeC--hhh
Confidence            999999 8999998768999999999999998865              34566889999999999876443322  112


Q ss_pred             CcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCc
Q 008415          361 PKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT  440 (566)
Q Consensus       361 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~  440 (566)
                      ...+.+|+.|++++ +. ........+..+++|+.|++.+|.+..++..        ....+++|+.|++++|+.+..++
T Consensus       148 ~~~l~~L~~L~l~~-n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          148 FSGLNSLEQLTLEK-CN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDY--------SFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             STTCTTCCEEEEES-CC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTT--------CSCSCTTCCEEEEECCTTCCEEC
T ss_pred             ccCCCCCCEEECCC-Cc-CcccChhHhcccCCCcEEeCCCCcCcEeChh--------hcccCcccceeeCCCCccccccC
Confidence            33457899999997 42 2333333477889999999999985544321        22467999999999988877765


Q ss_pred             h-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCC-CCCCCCccEEeecCCC
Q 008415          441 W-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN-PLPFPKLKKIDVCHCP  518 (566)
Q Consensus       441 ~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~-~~~~p~L~~L~i~~C~  518 (566)
                      . ....++|++|++++|. ++.++.            ..+..+++|+.|+|+++. ++.++.. ...+++|+.|++.++ 
T Consensus       218 ~~~~~~~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-  282 (477)
T 2id5_A          218 PNCLYGLNLTSLSITHCN-LTAVPY------------LAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-  282 (477)
T ss_dssp             TTTTTTCCCSEEEEESSC-CCSCCH------------HHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-
T ss_pred             cccccCccccEEECcCCc-ccccCH------------HHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-
Confidence            4 5556799999999985 333331            235678999999999864 6666543 466899999999996 


Q ss_pred             CCCCC-CCCCccccCCcEEEechhh
Q 008415          519 QLKKL-PLNSSSAKERRVVIEGEKK  542 (566)
Q Consensus       519 ~L~~l-P~~~~~~l~~L~i~~~~~~  542 (566)
                      +++.+ |..+... +.|+.++....
T Consensus       283 ~l~~~~~~~~~~l-~~L~~L~L~~N  306 (477)
T 2id5_A          283 QLAVVEPYAFRGL-NYLRVLNVSGN  306 (477)
T ss_dssp             CCSEECTTTBTTC-TTCCEEECCSS
T ss_pred             ccceECHHHhcCc-ccCCEEECCCC
Confidence            67775 4444433 66666555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=1.7e-20  Score=208.58  Aligned_cols=297  Identities=16%  Similarity=0.164  Sum_probs=172.5

Q ss_pred             ccccccccEEEeecCCccc-ccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCCCcc-ccccc------
Q 008415          195 FEEWEGAKRVSLMGNGIRS-LSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINISLRK-LPSGI------  265 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i------  265 (566)
                      ...+.++++|++.+|.+.. ++.+..+++|++|++++|.+.. +|.. ++++++|++|++++| .+.. +|..-      
T Consensus       196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~  273 (768)
T 3rgz_A          196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN-QFVGPIPPLPLKSLQY  273 (768)
T ss_dssp             CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSS-CCEESCCCCCCTTCCE
T ss_pred             cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCC-cccCccCccccCCCCE
Confidence            4556788888888888765 4557888899999999998874 4444 888999999999888 6653 22210      


Q ss_pred             ---------cccCcchhcc-ccCcEecccCcccCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchH-h
Q 008415          266 ---------RGLPQELKAL-EKLRYLNLDYTRFLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLM-K  333 (566)
Q Consensus       266 ---------~~LP~~i~~L-~~L~~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~  333 (566)
                               ..+|..+..+ ++|++|++++| .+. .+|.. ++.+++|++|++.+|....              ..+ .
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l~~--------------~ip~~  337 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPF-FGSCSLLESLALSSNNFSG--------------ELPMD  337 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGG-GGGCTTCCEEECCSSEEEE--------------ECCHH
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchH-HhcCCCccEEECCCCcccC--------------cCCHH
Confidence                     2567777665 88888888888 555 56666 8888888888888887653              122 2


Q ss_pred             hhcCCCCCceEEEEEcCccchhccccCCcc---------------------------cccceEEEEecccCCCCCeeeec
Q 008415          334 ELLGSKHLNVLSWTFRSSLGVQNFLKYPKL---------------------------VSITQSVLVKSGVHTSPPFNVLH  386 (566)
Q Consensus       334 ~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~  386 (566)
                      .++.+++|+.|+++.+....  .++.....                           ..+|+.|.+.+ +. ........
T Consensus       338 ~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~-n~-l~~~~p~~  413 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN-NG-FTGKIPPT  413 (768)
T ss_dssp             HHTTCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS-SE-EEEECCGG
T ss_pred             HHhcCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC-Cc-cccccCHH
Confidence            36777777777776543210  11111111                           22344444443 21 00000112


Q ss_pred             cccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccc
Q 008415          387 LAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIIS  464 (566)
Q Consensus       387 l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~  464 (566)
                      +..+++|+.|++++|. ...++         .....+++|+.|++++|.....+|. ++.+++|++|++++|.....+  
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p---------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--  482 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIP---------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--  482 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCC---------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--
T ss_pred             HhcCCCCCEEECcCCcccCccc---------HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC--
Confidence            4455556666665555 22211         1112455666666666543334433 555666666666665433222  


Q ss_pred             cccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEE
Q 008415          465 VDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVV  536 (566)
Q Consensus       465 ~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i  536 (566)
                                 |..+..+++|+.|+|.++.--..+|...+.+++|+.|++++|.-...+|..+... +.|+.
T Consensus       483 -----------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~  542 (768)
T 3rgz_A          483 -----------PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIW  542 (768)
T ss_dssp             -----------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCE
T ss_pred             -----------CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCE
Confidence                       2345566667777776654333455445556677777776663333466555444 33433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=5e-20  Score=191.83  Aligned_cols=250  Identities=17%  Similarity=0.186  Sum_probs=115.9

Q ss_pred             cccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccccccc
Q 008415          189 LTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGL  268 (566)
Q Consensus       189 ~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L  268 (566)
                      +..+|....+.++++|++.+|.+..++ +..+++|++|++++|.+..++   ++++++|++|++++| .++.+|      
T Consensus        54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~------  122 (457)
T 3bz5_A           54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD------  122 (457)
T ss_dssp             CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC------
T ss_pred             cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec------
Confidence            333344444455555555555555543 445555555555555554443   445555555555555 554332      


Q ss_pred             CcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          269 PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       269 P~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                         ++++++|++|++++| .++.+|   ++.+++|++|++.+|....               .+ .++.+++|+.|+++.
T Consensus       123 ---~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~---------------~~-~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          123 ---VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT---------------KL-DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             ---CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC---------------CC-CCTTCTTCCEEECCS
T ss_pred             ---CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc---------------cc-ccccCCcCCEEECCC
Confidence               345555555555555 455542   4455555555555553322               01 345556666666654


Q ss_pred             cCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEE
Q 008415          349 RSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTV  428 (566)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L  428 (566)
                      +....++     ....++|+.|.+++ +. ...   ..+..+++|+.|++++|.+..++           ...+++|+.|
T Consensus       180 n~l~~l~-----l~~l~~L~~L~l~~-N~-l~~---~~l~~l~~L~~L~Ls~N~l~~ip-----------~~~l~~L~~L  238 (457)
T 3bz5_A          180 NKITELD-----VSQNKLLNRLNCDT-NN-ITK---LDLNQNIQLTFLDCSSNKLTEID-----------VTPLTQLTYF  238 (457)
T ss_dssp             SCCCCCC-----CTTCTTCCEEECCS-SC-CSC---CCCTTCTTCSEEECCSSCCSCCC-----------CTTCTTCSEE
T ss_pred             Cccceec-----cccCCCCCEEECcC-Cc-CCe---eccccCCCCCEEECcCCcccccC-----------ccccCCCCEE
Confidence            4333321     22234566666654 21 111   13455566666666666533322           1245556666


Q ss_pred             ecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccC
Q 008415          429 SVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY  500 (566)
Q Consensus       429 ~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~  500 (566)
                      +++++ .+..++ ++.+++|+.|+++++. ++.+.-.......  .+  ..+.+++|+.|++++++.+..++
T Consensus       239 ~l~~N-~l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~--~~--~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          239 DCSVN-PLTELD-VSTLSKLTTLHCIQTD-LLEIDLTHNTQLI--YF--QAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             ECCSS-CCSCCC-CTTCTTCCEEECTTCC-CSCCCCTTCTTCC--EE--ECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             EeeCC-cCCCcC-HHHCCCCCEEeccCCC-CCEEECCCCccCC--cc--cccccccCCEEECCCCcccceec
Confidence            66554 333333 3344444444433221 1111100000000  01  12355677777777766555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.8e-20  Score=185.04  Aligned_cols=104  Identities=21%  Similarity=0.369  Sum_probs=50.9

Q ss_pred             ccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          199 EGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      ..++.|++.+|.+..++  .+..+++|++|++++|.+..++...|+++++|++|++++| .++.+|..+       .  +
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-------~--~  123 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-------P--S  123 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-------C--T
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccc-------c--c
Confidence            34555555555554442  2444555555555555554443333455555555555555 554444322       1  4


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      +|++|++++| .++.+|...+..+++|++|++.+|..
T Consensus       124 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          124 SLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             TCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             cCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcc
Confidence            5555555555 45555443345555555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=3.8e-20  Score=205.23  Aligned_cols=327  Identities=12%  Similarity=0.095  Sum_probs=186.9

Q ss_pred             ccccccccEEEeecCCccc------------------ccCC-C--CCCCccEEEecCCcc-cccchHHHhcCccCCEEec
Q 008415          195 FEEWEGAKRVSLMGNGIRS------------------LSEI-P--TCPRLVTLLLGGNRI-EEITDGFFQSMSTLRVLSL  252 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l-~~lp~~~~~~l~~Lr~L~L  252 (566)
                      +..+.+++.|++++|.+..                  +|.. .  .+++|++|++++|.+ ..+|.. ++++++|++|+|
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L  522 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI  522 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence            5566789999999998887                  6653 3  789999999999864 467766 889999999999


Q ss_pred             CCCCC-Ccc--ccccccccCcchhccccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccc--c---c--c
Q 008415          253 RINIS-LRK--LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVT--E---E--E  320 (566)
Q Consensus       253 ~~~~~-i~~--lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~--~---~--~  320 (566)
                      ++| . ++.  +|..+..++..+..+++|++|++++| .++.+|.  . ++++++|++|++++|.+....  .   .  .
T Consensus       523 s~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~  599 (876)
T 4ecn_A          523 ACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD  599 (876)
T ss_dssp             TTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBCCCCCTTSEESE
T ss_pred             cCC-CCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccchhhcCCCcceE
Confidence            999 6 663  55443211111222236666666666 5666665  4 666666666666666543210  0   0  0


Q ss_pred             ccccccCccchHhhhcCCCC-CceEEEEEcCccchhccccCCcccccceEEEEecccCC---------------------
Q 008415          321 GNVLCEDAEPLMKELLGSKH-LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT---------------------  378 (566)
Q Consensus       321 ~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------  378 (566)
                      .++........+..+..+++ |+.|+++.+....++....... ..+|+.|++++ +.-                     
T Consensus       600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             EECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcC-CcCCCccccchhhhccccCCCcCE
Confidence            00000011123344666666 7777776554332222111100 01245555544 211                     


Q ss_pred             -------CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hh--ccCCc
Q 008415          379 -------SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LV--FVQNL  448 (566)
Q Consensus       379 -------~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~--~l~~L  448 (566)
                             ...+....+..+++|+.|++++|.+..++...... .......+++|+.|+|++| .+..+|. +.  .+++|
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYL  755 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTC
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-ccccccccCCccEEECCCC-CCccchHHhhhccCCCc
Confidence                   01110001223456666666665533333211100 0000112348888888886 4556665 54  78888


Q ss_pred             ceEeEecccCcccccccccccccccccCCCCccccccceeeccccc------cccccCCCCCCCCCccEEeecCCCCCCC
Q 008415          449 KVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT------NLKSVYPNPLPFPKLKKIDVCHCPQLKK  522 (566)
Q Consensus       449 ~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~------~L~~l~~~~~~~p~L~~L~i~~C~~L~~  522 (566)
                      +.|+|++|.... +             |..+..+++|+.|+|++++      -...+|.....+++|+.|++++| .+..
T Consensus       756 ~~L~Ls~N~L~~-l-------------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~  820 (876)
T 4ecn_A          756 SNMDVSYNCFSS-F-------------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK  820 (876)
T ss_dssp             CEEECCSSCCSS-C-------------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred             CEEEeCCCCCCc-c-------------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence            888888875432 3             3467789999999997633      23456666677899999999997 5688


Q ss_pred             CCCCCccccCCcEEEechhhhhhcc
Q 008415          523 LPLNSSSAKERRVVIEGEKKWWEEL  547 (566)
Q Consensus       523 lP~~~~~~l~~L~i~~~~~~~~~~l  547 (566)
                      +|..+.   +.|+.++.....+..+
T Consensus       821 Ip~~l~---~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          821 VDEKLT---PQLYILDIADNPNISI  842 (876)
T ss_dssp             CCSCCC---SSSCEEECCSCTTCEE
T ss_pred             cCHhhc---CCCCEEECCCCCCCcc
Confidence            998765   3555555544444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=2.2e-19  Score=179.31  Aligned_cols=235  Identities=17%  Similarity=0.179  Sum_probs=132.9

Q ss_pred             EecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415          183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK  260 (566)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~  260 (566)
                      ...+..+..+|.. -...++.|++.+|.+..++.  +..+++|++|++++|.+..+++..++.+++|++|++++| .++.
T Consensus        37 ~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~  114 (330)
T 1xku_A           37 QCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKE  114 (330)
T ss_dssp             ECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSB
T ss_pred             EecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCc
Confidence            3334444444431 12466777777777766653  566777777777777766663333677777777777777 6666


Q ss_pred             ccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCC
Q 008415          261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH  340 (566)
Q Consensus       261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  340 (566)
                      +|..+       .  ++|++|++++| .++.++...+.++++|++|++.+|....            .+.....++++++
T Consensus       115 l~~~~-------~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~l~~  172 (330)
T 1xku_A          115 LPEKM-------P--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS------------SGIENGAFQGMKK  172 (330)
T ss_dssp             CCSSC-------C--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG------------GGBCTTGGGGCTT
T ss_pred             cChhh-------c--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc------------cCcChhhccCCCC
Confidence            65433       2  56777777777 6666666556777777777777766543            1123445666677


Q ss_pred             CceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCcc
Q 008415          341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQS  420 (566)
Q Consensus       341 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~  420 (566)
                      |+.|+++.+....++.   ..  ..+|+.|++++ +. ........+..+++|+.|++++|.+..++..        ...
T Consensus       173 L~~L~l~~n~l~~l~~---~~--~~~L~~L~l~~-n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~  237 (330)
T 1xku_A          173 LSYIRIADTNITTIPQ---GL--PPSLTELHLDG-NK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNG--------SLA  237 (330)
T ss_dssp             CCEEECCSSCCCSCCS---SC--CTTCSEEECTT-SC-CCEECTGGGTTCTTCCEEECCSSCCCEECTT--------TGG
T ss_pred             cCEEECCCCccccCCc---cc--cccCCEEECCC-Cc-CCccCHHHhcCCCCCCEEECCCCcCceeChh--------hcc
Confidence            7777766543332221   11  14566666665 21 1222222355566666666666664333211        113


Q ss_pred             CCCcccEEecccCcCCCCCch-hhccCCcceEeEeccc
Q 008415          421 GFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       421 ~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~  457 (566)
                      .+++|+.|+|+++ .+..+|. +..+++|++|++++|.
T Consensus       238 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          238 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence            4566666666665 3444443 5666666666666653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.1e-19  Score=193.15  Aligned_cols=122  Identities=22%  Similarity=0.269  Sum_probs=98.6

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+...+..+..+|..-. .++++|++++|.+..++  .+..+++|++|++++|.+..+++..|+++++|++|+|++| .+
T Consensus         4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l   81 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL   81 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CC
T ss_pred             eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ce
Confidence            45556666777775332 79999999999998875  4688999999999999999886555999999999999999 99


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCCCCcc
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      +.+|.       .  .+++|++|++++| .++.  +|.. ++++++|++|++++|.+..
T Consensus        82 ~~lp~-------~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           82 VKISC-------H--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CEEEC-------C--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred             eecCc-------c--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccch
Confidence            87664       2  7889999999998 6775  4566 8899999999998887643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=3.3e-20  Score=201.23  Aligned_cols=194  Identities=10%  Similarity=0.018  Sum_probs=99.8

Q ss_pred             hhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccc
Q 008415          334 ELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEE  413 (566)
Q Consensus       334 ~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~  413 (566)
                      .+..+++|+.|+++.+..............+++|+.|++++ +. ..... ..+..+++|+.|++++|.+..++.     
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-----  416 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTE-----  416 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS-CS-EEEEC-CCCTTCTTCCEEECTTSEEESTTT-----
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC-Cc-cccch-hhccCCCCCCeeECCCCccCCccC-----
Confidence            34567888888888654433321122222335677777776 32 11111 235566667777776666222110     


Q ss_pred             ccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccc------------cccccCCCCc
Q 008415          414 VKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRD------------ISVIIGSEHN  480 (566)
Q Consensus       414 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------------~~~~l~~~~~  480 (566)
                        ......+++|+.|++++|......+. ++.+++|++|++++|.....+....+...            .....+..+.
T Consensus       417 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          417 --FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             --TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             --hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence              00112344444444444432222222 34444444444444432211111000000            0001234567


Q ss_pred             cccccceeecccccccccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEec
Q 008415          481 FFAQLEYLSISWGTNLKSV-YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEG  539 (566)
Q Consensus       481 ~f~~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~  539 (566)
                      .+++|+.|+++++. ++.+ +.....+++|+.|++++| +++.+|..+....+.|+.++.
T Consensus       495 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          495 TLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNL  552 (606)
T ss_dssp             TCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEEC
T ss_pred             ccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEc
Confidence            88999999999874 5544 555677899999999997 599999886555334655543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=1.1e-19  Score=196.92  Aligned_cols=118  Identities=22%  Similarity=0.249  Sum_probs=90.2

Q ss_pred             ccccccccEEEeecCCcccc--cCCCCCCCccEEEecCCcccccchHHHhcCccCC--EEecCCCCCCccccccc-----
Q 008415          195 FEEWEGAKRVSLMGNGIRSL--SEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLR--VLSLRINISLRKLPSGI-----  265 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l--~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr--~L~L~~~~~i~~lp~~i-----  265 (566)
                      ...+.++++|.+.+|.+..+  +.+..+++|++|++++|.+..++...++.+++|+  .|++++| .+..+++..     
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~  203 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAV  203 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTTCE
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccChhHhhhcc
Confidence            34556788888888877765  5566688888888888888877666688888888  7888888 766554321     


Q ss_pred             ---------------------------------------------------------------ccc-CcchhccccCcEe
Q 008415          266 ---------------------------------------------------------------RGL-PQELKALEKLRYL  281 (566)
Q Consensus       266 ---------------------------------------------------------------~~L-P~~i~~L~~L~~L  281 (566)
                                                                                     ..+ |..++++++|++|
T Consensus       204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  283 (606)
T 3t6q_A          204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL  283 (606)
T ss_dssp             EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred             ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence                                                                           112 2237788999999


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++++| .++.+|.. ++.+++|++|++.+|.+..
T Consensus       284 ~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~  315 (606)
T 3t6q_A          284 DLTAT-HLSELPSG-LVGLSTLKKLVLSANKFEN  315 (606)
T ss_dssp             ECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSB
T ss_pred             eccCC-ccCCCChh-hcccccCCEEECccCCcCc
Confidence            99999 89999987 8999999999999988764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=8.9e-20  Score=195.38  Aligned_cols=146  Identities=25%  Similarity=0.276  Sum_probs=106.1

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +...+..+..+|..- ..++++|++++|.+..++  .+..+++|++|++++|.+..++...|+++++|++|+|++| .++
T Consensus        10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~   87 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS   87 (549)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred             EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC
Confidence            344445566666522 368899999999888764  4688899999999999888877656888999999999999 887


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCcc--chhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSII--PHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG  337 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l--P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (566)
                      .+|...      ++++++|++|++++| .++.+  |.. ++++++|++|++++|.....             .....+++
T Consensus        88 ~~~~~~------~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~-------------~~~~~~~~  146 (549)
T 2z81_A           88 SLSSSW------FGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFSE-------------IRRIDFAG  146 (549)
T ss_dssp             SCCHHH------HTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCCE-------------ECTTTTTT
T ss_pred             ccCHHH------hccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCccccc-------------cCHhhhhc
Confidence            766542      688888888888888 67643  454 78888888888888764321             12235666


Q ss_pred             CCCCceEEEEEcC
Q 008415          338 SKHLNVLSWTFRS  350 (566)
Q Consensus       338 L~~L~~L~i~~~~  350 (566)
                      +++|+.|+++.+.
T Consensus       147 l~~L~~L~L~~n~  159 (549)
T 2z81_A          147 LTSLNELEIKALS  159 (549)
T ss_dssp             CCEEEEEEEEETT
T ss_pred             ccccCeeeccCCc
Confidence            6777777776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=4.8e-20  Score=183.65  Aligned_cols=217  Identities=18%  Similarity=0.286  Sum_probs=148.2

Q ss_pred             ccccEEEeecCCcccccC-CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          199 EGAKRVSLMGNGIRSLSE-IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      .+++.|++.++.+..+|. +..+++|++|++++|.+..+|.. ++++++|++|+|++| .++.+|..       ++++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~-------l~~l~~  151 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPAS-------IASLNR  151 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGG-------GGGCTT
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHH-------HhcCcC
Confidence            589999999999998875 57799999999999999999987 899999999999999 88766654       699999


Q ss_pred             CcEecccCcccCCccchhhhcC---------CCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          278 LRYLNLDYTRFLSIIPHQLISG---------FSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                      |++|++++|..+..+|.. ++.         +++|++|++.+|.+..               .+..++++++|+.|+++.
T Consensus       152 L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~~  215 (328)
T 4fcg_A          152 LRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS---------------LPASIANLQNLKSLKIRN  215 (328)
T ss_dssp             CCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC---------------CCGGGGGCTTCCEEEEES
T ss_pred             CCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc---------------chHhhcCCCCCCEEEccC
Confidence            999999998788889886 554         7777777777766543               334456666666666663


Q ss_pred             cCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccE
Q 008415          349 RSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNT  427 (566)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~  427 (566)
                      +....+                             ...+..+++|+.|++++|. ...++.         ....+++|+.
T Consensus       216 N~l~~l-----------------------------~~~l~~l~~L~~L~Ls~n~~~~~~p~---------~~~~l~~L~~  257 (328)
T 4fcg_A          216 SPLSAL-----------------------------GPAIHHLPKLEELDLRGCTALRNYPP---------IFGGRAPLKR  257 (328)
T ss_dssp             SCCCCC-----------------------------CGGGGGCTTCCEEECTTCTTCCBCCC---------CTTCCCCCCE
T ss_pred             CCCCcC-----------------------------chhhccCCCCCEEECcCCcchhhhHH---------HhcCCCCCCE
Confidence            211100                             0124455666666666666 443221         1134566666


Q ss_pred             EecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecc
Q 008415          428 VSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSIS  491 (566)
Q Consensus       428 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~  491 (566)
                      |+|++|+....+|. ++.+++|++|+|++|.....++             ..+..+++|+.+.+.
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-------------~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-------------SLIAQLPANCIILVP  309 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-------------GGGGGSCTTCEEECC
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-------------HHHhhccCceEEeCC
Confidence            66666655555553 5666666666666665555433             244555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=3.7e-20  Score=201.29  Aligned_cols=323  Identities=12%  Similarity=0.108  Sum_probs=192.4

Q ss_pred             ccccccccEEEeecCCccc------------------ccC-CC--CCCCccEEEecCCccc-ccchHHHhcCccCCEEec
Q 008415          195 FEEWEGAKRVSLMGNGIRS------------------LSE-IP--TCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSL  252 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~------------------l~~-~~--~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L  252 (566)
                      +..+.+++.|++.+|.+..                  +|. +.  .+++|++|++++|.+. .+|.. ++++++|++|++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence            4556788999999988887                  664 35  6889999999988754 57766 888999999999


Q ss_pred             CCCCC-CccccccccccCcchhcc------ccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccccc----
Q 008415          253 RINIS-LRKLPSGIRGLPQELKAL------EKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVTEE----  319 (566)
Q Consensus       253 ~~~~~-i~~lp~~i~~LP~~i~~L------~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~----  319 (566)
                      ++| . ++.     ..+|..++++      ++|++|++++| .++.+|.  . ++++++|++|++++|.+......    
T Consensus       281 s~n-~~l~~-----~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l  352 (636)
T 4eco_A          281 ACN-RGISG-----EQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSE  352 (636)
T ss_dssp             TTC-TTSCH-----HHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred             cCC-CCCcc-----ccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccchhhhCCC
Confidence            988 6 652     0234445665      88888888888 6778887  5 88888888888888776521000    


Q ss_pred             ----cccccccCccchHhhhcCCCC-CceEEEEEcCccchhccccCCcccccceEEEEecccCC----------------
Q 008415          320 ----EGNVLCEDAEPLMKELLGSKH-LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT----------------  378 (566)
Q Consensus       320 ----~~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------  378 (566)
                          ..++........+..+..+++ |+.|+++.+....++....... ..+|+.|++++ +.-                
T Consensus       353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~-l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS-VSVMSAIDFSY-NEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC-SSCEEEEECCS-SCTTTTTTCSSCTTCSSCC
T ss_pred             CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcc-cCccCEEECcC-CcCCCcchhhhcccccccc
Confidence                000011111133445666666 7777776554332222111100 12455555544 211                


Q ss_pred             --------------CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hh
Q 008415          379 --------------SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LV  443 (566)
Q Consensus       379 --------------~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~  443 (566)
                                    ...+....+..+++|+.|++++|.+..++...... .......+++|+.|+|+++ .+..+|. +.
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFN-KLTKLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-TTEECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-ccccccccCCccEEECcCC-cCCccChhhh
Confidence                          11110001223455666666665533333221100 0000012237888888875 4446654 54


Q ss_pred             --ccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc------ccccccCCCCCCCCCccEEeec
Q 008415          444 --FVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG------TNLKSVYPNPLPFPKLKKIDVC  515 (566)
Q Consensus       444 --~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~------~~L~~l~~~~~~~p~L~~L~i~  515 (566)
                        .+++|+.|+|++|.... +             |..+..+++|+.|+|+++      .-...+|.....+++|+.|+++
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~-i-------------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSK-F-------------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSS-C-------------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             hccCCCcCEEECCCCCCCC-c-------------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence              78888888888775433 3             345678899999999543      3345566667778999999999


Q ss_pred             CCCCCCCCCCCCccccCCcEEEechhhhhhccc
Q 008415          516 HCPQLKKLPLNSSSAKERRVVIEGEKKWWEELQ  548 (566)
Q Consensus       516 ~C~~L~~lP~~~~~~l~~L~i~~~~~~~~~~l~  548 (566)
                      +| +++.+|..+.   +.|+.++.....+..+.
T Consensus       575 ~N-~l~~ip~~~~---~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          575 SN-DIRKVNEKIT---PNISVLDIKDNPNISID  603 (636)
T ss_dssp             SS-CCCBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred             CC-cCCccCHhHh---CcCCEEECcCCCCcccc
Confidence            97 5688998755   45555555544444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=8.8e-20  Score=189.95  Aligned_cols=258  Identities=17%  Similarity=0.169  Sum_probs=198.4

Q ss_pred             ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      ...+.++++|+++++.+..+|.+..+++|++|++++|.+..+|   ++.+++|++|++++| .++.+|         +++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~---------~~~  104 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD---------VTP  104 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---------CTT
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee---------cCC
Confidence            4456899999999999999998899999999999999998886   789999999999999 887754         589


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV  354 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~  354 (566)
                      +++|++|++++| .++.+|   ++.+++|++|++++|.+..               .  .++.+++|+.|+++.+...  
T Consensus       105 l~~L~~L~L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~~---------------l--~l~~l~~L~~L~l~~n~~~--  161 (457)
T 3bz5_A          105 LTKLTYLNCDTN-KLTKLD---VSQNPLLTYLNCARNTLTE---------------I--DVSHNTQLTELDCHLNKKI--  161 (457)
T ss_dssp             CTTCCEEECCSS-CCSCCC---CTTCTTCCEEECTTSCCSC---------------C--CCTTCTTCCEEECTTCSCC--
T ss_pred             CCcCCEEECCCC-cCCeec---CCCCCcCCEEECCCCccce---------------e--ccccCCcCCEEECCCCCcc--
Confidence            999999999999 899885   7899999999999998764               1  3778899999998865311  


Q ss_pred             hccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415          355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR  434 (566)
Q Consensus       355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  434 (566)
                      ..+  ....+.+|+.|++++ +. ...   ..+..+++|+.|++++|.+..++           ...+++|+.|+++++ 
T Consensus       162 ~~~--~~~~l~~L~~L~ls~-n~-l~~---l~l~~l~~L~~L~l~~N~l~~~~-----------l~~l~~L~~L~Ls~N-  222 (457)
T 3bz5_A          162 TKL--DVTPQTQLTTLDCSF-NK-ITE---LDVSQNKLLNRLNCDTNNITKLD-----------LNQNIQLTFLDCSSN-  222 (457)
T ss_dssp             CCC--CCTTCTTCCEEECCS-SC-CCC---CCCTTCTTCCEEECCSSCCSCCC-----------CTTCTTCSEEECCSS-
T ss_pred             ccc--ccccCCcCCEEECCC-Cc-cce---eccccCCCCCEEECcCCcCCeec-----------cccCCCCCEEECcCC-
Confidence            111  133457899999997 42 222   23778899999999999855432           246899999999996 


Q ss_pred             CCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCcccc----------ccceeeccccccccccCCCCC
Q 008415          435 KAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFA----------QLEYLSISWGTNLKSVYPNPL  504 (566)
Q Consensus       435 ~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~----------~L~~L~L~~~~~L~~l~~~~~  504 (566)
                      .+..+| ++.+++|+.|+++++.. +.++               ...++          +|+.|++.++..+..++.  .
T Consensus       223 ~l~~ip-~~~l~~L~~L~l~~N~l-~~~~---------------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~  283 (457)
T 3bz5_A          223 KLTEID-VTPLTQLTYFDCSVNPL-TELD---------------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--E  283 (457)
T ss_dssp             CCSCCC-CTTCTTCSEEECCSSCC-SCCC---------------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--T
T ss_pred             cccccC-ccccCCCCEEEeeCCcC-CCcC---------------HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--c
Confidence            567777 88999999999998853 3222               22344          455566666655555542  3


Q ss_pred             CCCCccEEeecCCCCCCCCCCC
Q 008415          505 PFPKLKKIDVCHCPQLKKLPLN  526 (566)
Q Consensus       505 ~~p~L~~L~i~~C~~L~~lP~~  526 (566)
                      .+++|+.|++++|+.+..+|..
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~~  305 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDCQ  305 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEECT
T ss_pred             ccccCCEEECCCCcccceeccC
Confidence            5678888888888766666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=1.4e-19  Score=180.87  Aligned_cols=265  Identities=15%  Similarity=0.153  Sum_probs=191.4

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      ..++.+.+.++.+..+|... .++|++|++++|.+..++...|+++++|++|++++| .++.++      |..++++++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~------~~~~~~l~~L  104 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIH------EKAFSPLRKL  104 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEEC------GGGSTTCTTC
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccC------HhHhhCcCCC
Confidence            36889999999998887533 479999999999999887756999999999999999 888664      3447999999


Q ss_pred             cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc
Q 008415          279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL  358 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~  358 (566)
                      ++|++++| .++.+|.. +.  ++|++|++.+|.+..              .....++++++|+.|+++.+.........
T Consensus       105 ~~L~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A          105 QKLYISKN-HLVEIPPN-LP--SSLVELRIHDNRIRK--------------VPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             CEEECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCC--------------CCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             CEEECCCC-cCCccCcc-cc--ccCCEEECCCCccCc--------------cCHhHhCCCccCCEEECCCCccccCCCCc
Confidence            99999999 89999986 54  899999999998765              23445788999999999876543322222


Q ss_pred             cCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC
Q 008415          359 KYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD  438 (566)
Q Consensus       359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~  438 (566)
                      ...... +|+.|++++ +. ...+  + ..-.++|+.|++++|.+..++..        ....+++|+.|+++++ .+..
T Consensus       167 ~~~~~l-~L~~L~l~~-n~-l~~l--~-~~~~~~L~~L~l~~n~i~~~~~~--------~l~~l~~L~~L~L~~N-~l~~  231 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISE-AK-LTGI--P-KDLPETLNELHLDHNKIQAIELE--------DLLRYSKLYRLGLGHN-QIRM  231 (332)
T ss_dssp             TSSCSC-CCSCCBCCS-SB-CSSC--C-SSSCSSCSCCBCCSSCCCCCCTT--------SSTTCTTCSCCBCCSS-CCCC
T ss_pred             ccccCC-ccCEEECcC-CC-CCcc--C-ccccCCCCEEECCCCcCCccCHH--------HhcCCCCCCEEECCCC-cCCc
Confidence            222222 677777776 32 1111  1 11226888899988885443221        2246788899999886 4555


Q ss_pred             Cc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-------CCCCCc
Q 008415          439 LT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-------LPFPKL  509 (566)
Q Consensus       439 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-------~~~p~L  509 (566)
                      ++  .+..+++|++|++++|.. ..+             |..+..+++|+.|+++++ .++.++...       ..++.|
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l-~~l-------------p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l  296 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKL-SRV-------------PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYY  296 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCC-CBC-------------CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCB
T ss_pred             CChhHhhCCCCCCEEECCCCcC-eec-------------ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccc
Confidence            54  378889999999988743 333             345677888999999875 466665432       115778


Q ss_pred             cEEeecCCCC
Q 008415          510 KKIDVCHCPQ  519 (566)
Q Consensus       510 ~~L~i~~C~~  519 (566)
                      +.|++.++|-
T Consensus       297 ~~L~l~~N~~  306 (332)
T 2ft3_A          297 NGISLFNNPV  306 (332)
T ss_dssp             SEEECCSSSS
T ss_pred             cceEeecCcc
Confidence            8899988763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=4e-19  Score=177.39  Aligned_cols=150  Identities=20%  Similarity=0.181  Sum_probs=113.7

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      .+++.+.+.++.+..+|.. -.++|++|++++|.+..++...|+++++|++|++++| .++.++      |..++++++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~------~~~~~~l~~L  102 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKIS------PGAFAPLVKL  102 (330)
T ss_dssp             EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBC------TTTTTTCTTC
T ss_pred             CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeC------HHHhcCCCCC
Confidence            4788899988888888753 2479999999999999998866899999999999999 887653      3447999999


Q ss_pred             cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc
Q 008415          279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL  358 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~  358 (566)
                      ++|++++| .++.+|.. +.  ++|++|++.+|.+..              .....+.++++|+.|+++.+.........
T Consensus       103 ~~L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A          103 ERLYLSKN-QLKELPEK-MP--KTLQELRVHENEITK--------------VRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             CEEECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB--------------BCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             CEEECCCC-cCCccChh-hc--ccccEEECCCCcccc--------------cCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            99999999 89999986 44  899999999998765              35566888999999988855332211111


Q ss_pred             cCCcccccceEEEEec
Q 008415          359 KYPKLVSITQSVLVKS  374 (566)
Q Consensus       359 ~~~~~~~~L~~L~l~~  374 (566)
                      .....+++|+.|.+++
T Consensus       165 ~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          165 GAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             TGGGGCTTCCEEECCS
T ss_pred             hhccCCCCcCEEECCC
Confidence            2222234555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=2.6e-20  Score=184.42  Aligned_cols=127  Identities=18%  Similarity=0.288  Sum_probs=100.2

Q ss_pred             ccccEEEeecCCccc---cc-CCCCCCCccEEEecC-Cccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          199 EGAKRVSLMGNGIRS---LS-EIPTCPRLVTLLLGG-NRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~---l~-~~~~~~~Lr~L~l~~-~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      .++++|++.++.+..   +| .+..+++|++|++++ +.+. .+|.. ++++++|++|++++| .++      ..+|..+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~------~~~p~~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVS------GAIPDFL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCE------EECCGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeC------CcCCHHH
Confidence            478899999988874   44 467889999999995 6665 56766 889999999999999 876      2344557


Q ss_pred             hccccCcEecccCcccCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC-CCceEEEEEc
Q 008415          273 KALEKLRYLNLDYTRFLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK-HLNVLSWTFR  349 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~i~~~  349 (566)
                      +++++|++|++++| .++ .+|.. ++.+++|++|++.+|.+..              ..+..+..++ +|+.|+++.+
T Consensus       122 ~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~--------------~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          122 SQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISG--------------AIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEE--------------ECCGGGGCCCTTCCEEECCSS
T ss_pred             hCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccC--------------cCCHHHhhhhhcCcEEECcCC
Confidence            89999999999999 666 67776 8999999999999988764              3566777776 8888887744

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=2.8e-19  Score=186.87  Aligned_cols=311  Identities=16%  Similarity=0.127  Sum_probs=205.6

Q ss_pred             EEecCCccccC--CCccccccccEEEeecCCcc-ccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCC
Q 008415          182 LVHAGVELTEA--PKFEEWEGAKRVSLMGNGIR-SLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINI  256 (566)
Q Consensus       182 ~~~~~~~~~~~--~~~~~~~~lr~Lsl~~~~~~-~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~  256 (566)
                      +...+..+..+  ..+..+.++++|++.+|.+. .++  .+..+++|++|++++|.+..++...|+++++|++|++++| 
T Consensus        35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-  113 (455)
T 3v47_A           35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-  113 (455)
T ss_dssp             EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-
T ss_pred             EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-
Confidence            44444444443  23556789999999999875 443  4688999999999999998875545899999999999999 


Q ss_pred             CCcc-ccccccccCcchhccccCcEecccCcccCCcc-chhhhcCCCCCcEEEecCCCCccccc-ccccc----------
Q 008415          257 SLRK-LPSGIRGLPQELKALEKLRYLNLDYTRFLSII-PHQLISGFSKLEVLRLFGCGFWVVTE-EEGNV----------  323 (566)
Q Consensus       257 ~i~~-lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l-P~~~i~~L~~L~~L~l~~~~~~~~~~-~~~~~----------  323 (566)
                      .++. +|..     ..++++++|++|++++| .++.+ |...++++++|++|++++|.+..... .....          
T Consensus       114 ~l~~~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          114 NLDGAVLSG-----NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             CCBTHHHHS-----STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             CCCccccCc-----ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            8874 2221     12688999999999999 77777 54447899999999999987654200 00000          


Q ss_pred             ccc---C------ccchHhhhcCCCCCceEEEEEcCccc-h-hccccC--------------------------------
Q 008415          324 LCE---D------AEPLMKELLGSKHLNVLSWTFRSSLG-V-QNFLKY--------------------------------  360 (566)
Q Consensus       324 ~~~---~------~~~~~~~l~~L~~L~~L~i~~~~~~~-~-~~~~~~--------------------------------  360 (566)
                      ...   .      .......+..+++|+.|+++.+.... . ..+...                                
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence            000   0      00001112344667777776543211 0 000000                                


Q ss_pred             ---CcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCC
Q 008415          361 ---PKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAK  437 (566)
Q Consensus       361 ---~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~  437 (566)
                         .....+|+.|++++ +. ........+..+++|+.|++++|.+..++..        ....+++|++|+|+++. +.
T Consensus       268 ~~~~~~~~~L~~L~l~~-n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~-l~  336 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSK-SK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDN--------AFWGLTHLLKLNLSQNF-LG  336 (455)
T ss_dssp             TTGGGTTSCCCEEECCS-SC-CCEECTTTTTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSC-CC
T ss_pred             ccccccccCceEEEecC-cc-ccccchhhcccCCCCCEEECCCCcccccChh--------HhcCcccCCEEECCCCc-cC
Confidence               00014677777776 32 2222222477889999999999995544322        22468999999999974 55


Q ss_pred             CC-c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccEEee
Q 008415          438 DL-T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKKIDV  514 (566)
Q Consensus       438 ~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i  514 (566)
                      .+ + .++.+++|++|++++|.. ..+.            +..+..+++|++|+|+++ .++.++... ..+++|+.|++
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N~l-~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYNHI-RALG------------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSSCC-CEEC------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             CcChhHhcCcccCCEEECCCCcc-cccC------------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence            54 3 378899999999999854 3332            236778999999999985 588877653 67899999999


Q ss_pred             cCCCCCCCCC
Q 008415          515 CHCPQLKKLP  524 (566)
Q Consensus       515 ~~C~~L~~lP  524 (566)
                      ++++---..|
T Consensus       403 ~~N~l~~~~~  412 (455)
T 3v47_A          403 HTNPWDCSCP  412 (455)
T ss_dssp             CSSCBCCCTT
T ss_pred             cCCCcccCCC
Confidence            9975333344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=7.5e-19  Score=197.43  Aligned_cols=148  Identities=22%  Similarity=0.231  Sum_probs=118.6

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCCC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINI  256 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~~  256 (566)
                      ..+.+.+.++..+|.  ...++++|++++|.+..+.  .+..+++|++|++++| .+..+++..|+++++|++|+|++| 
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-   83 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence            456667777888887  5589999999999998864  5789999999999999 455775555999999999999999 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCc-cch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhh
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-IPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE  334 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (566)
                      .+..++      |..++++++|++|++++| .+.. +|. ..++++++|++|++++|.....             .....
T Consensus        84 ~l~~~~------p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-------------~~~~~  143 (844)
T 3j0a_A           84 KIYFLH------PDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-------------YLHPS  143 (844)
T ss_dssp             CCCEEC------TTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-------------CCCGG
T ss_pred             cCcccC------HhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccc-------------ccchh
Confidence            888653      444799999999999999 6765 443 3378999999999999987641             12356


Q ss_pred             hcCCCCCceEEEEEcC
Q 008415          335 LLGSKHLNVLSWTFRS  350 (566)
Q Consensus       335 l~~L~~L~~L~i~~~~  350 (566)
                      ++++++|+.|+++.+.
T Consensus       144 ~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          144 FGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             GGTCSSCCEEEEESSC
T ss_pred             HhhCCCCCEEECCCCc
Confidence            8899999999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=1.5e-19  Score=193.62  Aligned_cols=128  Identities=18%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             EEecCCccccCC--CccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          182 LVHAGVELTEAP--KFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       182 ~~~~~~~~~~~~--~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      +...+..+...+  ....+.++++|++.+|.+..++  .+..+++|++|++++|.+..++...|+++++|++|++++| .
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~  109 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-P  109 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-C
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-c
Confidence            334444444332  3566789999999999998876  4789999999999999999998887999999999999999 8


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++.++     .|..++++++|++|++++|..+..+|...++++++|++|++.+|....
T Consensus       110 l~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          110 YQTLG-----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CSSSC-----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             ccccc-----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            87542     244579999999999999955788885449999999999999988764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=2.9e-19  Score=198.72  Aligned_cols=207  Identities=20%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             CCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc-cCcEecccCcc--------
Q 008415          218 PTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE-KLRYLNLDYTR--------  287 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~-~L~~L~L~~~~--------  287 (566)
                      ..+++|++|++++|.+. .+|...++++++|++|++++| .+.      ..+|..++++. +|++|++++|.        
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~------~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFS------GELPESLTNLSASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-EEE------ECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred             hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC-ccC------ccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence            44455555555555444 444444555555555555555 443      13344444444 44444444441        


Q ss_pred             -----------------cCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          288 -----------------FLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       288 -----------------~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                                       .+. .+|.. ++.+++|++|++++|....              ..+..++.+++|+.|+++.+
T Consensus       388 ~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~--------------~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          388 LCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSG--------------TIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             TTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEES--------------CCCGGGGGCTTCCEEECCSS
T ss_pred             hhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCCcccC--------------cccHHHhcCCCCCEEECCCC
Confidence                             222 33433 4445555555555444332              24445566666666666644


Q ss_pred             CccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEE
Q 008415          350 SSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTV  428 (566)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L  428 (566)
                      ....  ..+.....+++|+.|++++ +. ........+..+++|+.|++++|. ...+|       .|  ...+++|+.|
T Consensus       453 ~l~~--~~p~~~~~l~~L~~L~L~~-N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-------~~--~~~l~~L~~L  519 (768)
T 3rgz_A          453 MLEG--EIPQELMYVKTLETLILDF-ND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIP-------KW--IGRLENLAIL  519 (768)
T ss_dssp             CCCS--CCCGGGGGCTTCCEEECCS-SC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCC-------GG--GGGCTTCCEE
T ss_pred             cccC--cCCHHHcCCCCceEEEecC-Cc-ccCcCCHHHhcCCCCCEEEccCCccCCcCC-------hH--HhcCCCCCEE
Confidence            3221  1122223346677777776 32 121222246677788888888777 33332       11  2357888888


Q ss_pred             ecccCcCCCCCch-hhccCCcceEeEecccCc
Q 008415          429 SVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDM  459 (566)
Q Consensus       429 ~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l  459 (566)
                      +|++|.....+|. ++.+++|+.|++++|...
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            8888765545554 788888888888877644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=184.00  Aligned_cols=124  Identities=24%  Similarity=0.235  Sum_probs=103.7

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      +++++++++++.+|.... ++|++|++++|.+..++...|.++++|++|+|++| .++.++      |..++++++|++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~------~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLD------ISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEE------GGGGTTCTTCCEE
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcC------hHHhhcccCCCEE
Confidence            678999999999886433 89999999999999988766999999999999999 888664      3447999999999


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      ++++| .++.+|..   .+++|++|++++|.+...             ..+..++++++|+.|+++.+.
T Consensus        75 ~Ls~N-~l~~lp~~---~l~~L~~L~L~~N~l~~~-------------~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           75 DLSHN-KLVKISCH---PTVNLKHLDLSFNAFDAL-------------PICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             ECCSS-CCCEEECC---CCCCCSEEECCSSCCSSC-------------CCCGGGGGCTTCCEEEEEESS
T ss_pred             ecCCC-ceeecCcc---ccCCccEEeccCCccccc-------------cchhhhccCCcceEEEecCcc
Confidence            99999 89999983   899999999999987641             234567777777777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=3.9e-18  Score=183.02  Aligned_cols=126  Identities=26%  Similarity=0.245  Sum_probs=103.3

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      ...+++++++++++.+|... .++|++|++++|.+..++...|+++++|++|+|++| .++.+++      ..++++++|
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------~~~~~l~~L  102 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDF------HVFLFNQDL  102 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECT------TTTTTCTTC
T ss_pred             CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCH------HHhCCCCCC
Confidence            34589999999999988643 389999999999999998766999999999999999 9987653      347999999


Q ss_pred             cEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          279 RYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      ++|++++| .++.+|..   .+++|++|++++|.+...             ..+..++++++|+.|+++.+
T Consensus       103 ~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l-------------~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          103 EYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVL-------------PVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             CEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBC-------------CCCGGGGGCTTCCEEEEECS
T ss_pred             CEEECCCC-cCCccCcc---ccccCCEEECCCCCcccc-------------CchHhhcccCcccEEecCCC
Confidence            99999999 89999984   899999999999987641             12345667777777777754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=7.8e-19  Score=177.04  Aligned_cols=269  Identities=17%  Similarity=0.118  Sum_probs=129.3

Q ss_pred             EEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecc
Q 008415          204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNL  283 (566)
Q Consensus       204 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L  283 (566)
                      .+..++.++.+|.. -.++|++|++++|.+..++...+.++++|++|++++| .++.++..      .++++++|++|++
T Consensus        36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L  107 (353)
T 2z80_A           36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEED------SFSSLGSLEHLDL  107 (353)
T ss_dssp             EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTT------TTTTCTTCCEEEC
T ss_pred             eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHh------hcCCCCCCCEEEC
Confidence            34444444444431 1235555555555555555433555555555555555 55443321      2455555555555


Q ss_pred             cCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchH-hhhcCCCCCceEEEEEcC-ccchhccccCC
Q 008415          284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLM-KELLGSKHLNVLSWTFRS-SLGVQNFLKYP  361 (566)
Q Consensus       284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~L~i~~~~-~~~~~~~~~~~  361 (566)
                      ++| .++.+|.+.++++++|++|++++|.+..              ... ..++++++|+.|+++.+. ...+.  ....
T Consensus       108 s~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~  170 (353)
T 2z80_A          108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKT--------------LGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDF  170 (353)
T ss_dssp             CSS-CCSSCCHHHHTTCTTCSEEECTTCCCSS--------------SCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTT
T ss_pred             CCC-cCCcCCHhHhCCCccCCEEECCCCCCcc--------------cCchhhhccCCCCcEEECCCCccccccC--HHHc
Confidence            555 4555555445555555555555554432              011 234445555555555432 11110  0111


Q ss_pred             cccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCc-
Q 008415          362 KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLT-  440 (566)
Q Consensus       362 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-  440 (566)
                      ..+++|+.|++++ +. ........+..+++|++|++++|.+..++...        ...+++|+.|+++++. +..++ 
T Consensus       171 ~~l~~L~~L~l~~-n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~L~~n~-l~~~~~  239 (353)
T 2z80_A          171 AGLTFLEELEIDA-SD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIF--------VDVTSSVECLELRDTD-LDTFHF  239 (353)
T ss_dssp             TTCCEEEEEEEEE-TT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHH--------HHHTTTEEEEEEESCB-CTTCCC
T ss_pred             cCCCCCCEEECCC-CC-cCccCHHHHhccccCCeecCCCCccccchhhh--------hhhcccccEEECCCCc-cccccc
Confidence            2224555555554 21 11111223555666666666666633222110        1235666777776643 33321 


Q ss_pred             ----hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccEEeec
Q 008415          441 ----WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKKIDVC  515 (566)
Q Consensus       441 ----~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i~  515 (566)
                          .....+.++.++++++.....-..         .+|..+..+++|+.|+++++ .++.++... ..+++|++|++.
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~---------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNVKITDESLF---------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             C------CCCCCCEEEEESCBCCHHHHH---------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccccchhhccccccccccCcchh---------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence                123355666666665532211000         01223556777777877775 466777654 567788888887


Q ss_pred             CCC
Q 008415          516 HCP  518 (566)
Q Consensus       516 ~C~  518 (566)
                      +++
T Consensus       310 ~N~  312 (353)
T 2z80_A          310 TNP  312 (353)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=4.3e-19  Score=192.84  Aligned_cols=286  Identities=15%  Similarity=0.146  Sum_probs=185.9

Q ss_pred             ccccccccEEEeecCC-ccc--ccC-C------CCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCc-cc
Q 008415          195 FEEWEGAKRVSLMGNG-IRS--LSE-I------PTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLR-KL  261 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~-~~~--l~~-~------~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~-~l  261 (566)
                      +..+.++++|++.+|. +..  +|. +      ..+++|++|++++|.+..+|.  . ++++++|++|++++| .++ .+
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~-l~~l~~L~~L~L~~N-~l~g~i  346 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYN-QLEGKL  346 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH-HTTCTTCCEEECCSC-CCEEEC
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh-hccCCCCCEEeCcCC-cCccch
Confidence            5567899999999997 764  543 2      334899999999998888987  5 899999999999999 887 66


Q ss_pred             cccc----------------cccCcchhcccc-CcEecccCcccCCccchhhhcCCC--CCcEEEecCCCCccccccccc
Q 008415          262 PSGI----------------RGLPQELKALEK-LRYLNLDYTRFLSIIPHQLISGFS--KLEVLRLFGCGFWVVTEEEGN  322 (566)
Q Consensus       262 p~~i----------------~~LP~~i~~L~~-L~~L~L~~~~~l~~lP~~~i~~L~--~L~~L~l~~~~~~~~~~~~~~  322 (566)
                      | .+                ..+|..++++++ |++|++++| .++.+|.. +..+.  +|++|++++|.+..       
T Consensus       347 p-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~-------  416 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI-FDAKSVSVMSAIDFSYNEIGS-------  416 (636)
T ss_dssp             C-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSC-CCTTCSSCEEEEECCSSCTTT-------
T ss_pred             h-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchh-hhhcccCccCEEECcCCcCCC-------
Confidence            6 43                234444444444 555555555 34444443 33322  45555555444432       


Q ss_pred             ccccCccchHhhhc-------CCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccc-------
Q 008415          323 VLCEDAEPLMKELL-------GSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLA-------  388 (566)
Q Consensus       323 ~~~~~~~~~~~~l~-------~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-------  388 (566)
                             ..+..+.       .+.+|+.|+++.+....++..  ....+++|+.|++++ +. ...+....+.       
T Consensus       417 -------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~-N~-l~~i~~~~~~~~~~~~~  485 (636)
T 4eco_A          417 -------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMG-NM-LTEIPKNSLKDENENFK  485 (636)
T ss_dssp             -------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCS-SC-CSBCCSSSSEETTEECT
T ss_pred             -------cchhhhcccccccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCC-CC-CCCcCHHHhcccccccc
Confidence                   2333444       667888888886544332211  011246899999987 43 2222211222       


Q ss_pred             cccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcc--ccccc
Q 008415          389 YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDME--EIISV  465 (566)
Q Consensus       389 ~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~--~i~~~  465 (566)
                      .+++|+.|++++|.+..++..       .....+++|+.|+|+++. +..+|. ++.+++|+.|+|++|..+.  .+.. 
T Consensus       486 ~l~~L~~L~Ls~N~l~~lp~~-------~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-  556 (636)
T 4eco_A          486 NTYLLTSIDLRFNKLTKLSDD-------FRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR-  556 (636)
T ss_dssp             TGGGCCEEECCSSCCCBCCGG-------GSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-
T ss_pred             ccCCccEEECcCCcCCccChh-------hhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccc-
Confidence            234999999999995555421       111268999999999964 555654 8899999999997654211  1110 


Q ss_pred             ccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415          466 DKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLP  524 (566)
Q Consensus       466 ~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP  524 (566)
                              .+|..+..+++|+.|+|+++. ++.+|...  +++|+.|++++|+ +..++
T Consensus       557 --------~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~~  603 (636)
T 4eco_A          557 --------EWPEGITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNP-NISID  603 (636)
T ss_dssp             --------CCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSCT-TCEEE
T ss_pred             --------cChHHHhcCCCCCEEECCCCc-CCccCHhH--hCcCCEEECcCCC-Ccccc
Confidence                    134567889999999999975 68887653  3899999999985 44443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=2.2e-18  Score=187.76  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=75.0

Q ss_pred             cCCCcccEEecccCcCCCCCc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccc
Q 008415          420 SGFRSLNTVSVHYCRKAKDLT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK  497 (566)
Q Consensus       420 ~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~  497 (566)
                      ..+++|+.|+++++.....+.  .+..+++|++|+|++|. ++.+.            |..+..+++|++|+|+++ +++
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~------------~~~f~~l~~L~~L~Ls~N-~l~  531 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS------------PTAFNSLSSLQVLNMSHN-NFF  531 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC------------TTTTTTCTTCCEEECTTS-CCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcC------------hHHHcCCCCCCEEECCCC-cCC
Confidence            356888999998876555432  27788999999999884 44443            235778999999999985 577


Q ss_pred             ccCCC-CCCCCCccEEeecCCCCCCCCCC-CCccccCCcEEEec
Q 008415          498 SVYPN-PLPFPKLKKIDVCHCPQLKKLPL-NSSSAKERRVVIEG  539 (566)
Q Consensus       498 ~l~~~-~~~~p~L~~L~i~~C~~L~~lP~-~~~~~l~~L~i~~~  539 (566)
                      .++.. ...+++|+.|+++++ +|+.+|. .+......|+.++.
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC
T ss_pred             CCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe
Confidence            77643 456899999999995 6877654 44444345665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=2.3e-18  Score=185.25  Aligned_cols=320  Identities=16%  Similarity=0.132  Sum_probs=203.2

Q ss_pred             ccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc-c------
Q 008415          195 FEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG-I------  265 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i------  265 (566)
                      +..+.++++|++.+|.+..++  .+..+++|++|++++|.+..+++..|+++++|++|++++| .++.+|.. +      
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccc
Confidence            344567777777777766654  2466677777777777666666544666777777777776 66665541 1      


Q ss_pred             ----------c--ccCcchhccccCcEecccCcccCCccchhhhcCCCCC----cEEEecCCCCcccc---------cc-
Q 008415          266 ----------R--GLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKL----EVLRLFGCGFWVVT---------EE-  319 (566)
Q Consensus       266 ----------~--~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L----~~L~l~~~~~~~~~---------~~-  319 (566)
                                .  .+|..++++++|++|++++| .++.++...++.+++|    ++|++.+|......         +. 
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L  205 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL  205 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence                      1  46888899999999999998 6777654336655555    55555554332100         00 


Q ss_pred             ---------------------------------------------------------------------------ccc--
Q 008415          320 ---------------------------------------------------------------------------EGN--  322 (566)
Q Consensus       320 ---------------------------------------------------------------------------~~~--  322 (566)
                                                                                                 ...  
T Consensus       206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~  285 (570)
T 2z63_A          206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS  285 (570)
T ss_dssp             EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred             ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence                                                                                       000  


Q ss_pred             ---ccc---cCccc-----------------------h----------------HhhhcCCCCCceEEEEEcCccchhcc
Q 008415          323 ---VLC---EDAEP-----------------------L----------------MKELLGSKHLNVLSWTFRSSLGVQNF  357 (566)
Q Consensus       323 ---~~~---~~~~~-----------------------~----------------~~~l~~L~~L~~L~i~~~~~~~~~~~  357 (566)
                         +..   ...+.                       .                ......+++|+.|+++.+........
T Consensus       286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  365 (570)
T 2z63_A          286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC  365 (570)
T ss_dssp             EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE
T ss_pred             EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc
Confidence               000   00000                       0                00015789999999987654433221


Q ss_pred             ccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCC
Q 008415          358 LKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAK  437 (566)
Q Consensus       358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~  437 (566)
                      ......+.+|+.|++++ +. ..... ..+..+++|+.|++.+|.+...+.       ......+++|++|++++|....
T Consensus       366 ~~~~~~~~~L~~L~l~~-n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          366 SQSDFGTTSLKYLDLSF-NG-VITMS-SNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             EHHHHTCSCCCEEECCS-CS-EEEEE-EEEETCTTCCEEECTTSEEESCTT-------SCTTTTCTTCCEEECTTSCCEE
T ss_pred             cccccccCccCEEECCC-Cc-ccccc-ccccccCCCCEEEccCCccccccc-------hhhhhcCCCCCEEeCcCCcccc
Confidence            22233347899999997 42 11111 137788999999999988433211       1123468999999999986555


Q ss_pred             CCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccccc-CCCCCCCCCccEEeec
Q 008415          438 DLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-YPNPLPFPKLKKIDVC  515 (566)
Q Consensus       438 ~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~  515 (566)
                      ..+. +..+++|++|++++|......            +|..+..+++|+.|+++++. ++.+ +.....+++|++|+++
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~~~------------~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQENF------------LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGE------------ECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             cchhhhhcCCcCcEEECcCCcCcccc------------chhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCC
Confidence            4443 788999999999998654211            23467889999999999975 6665 5566778999999999


Q ss_pred             CCCCCCCCCCCCccccCCcEEEech
Q 008415          516 HCPQLKKLPLNSSSAKERRVVIEGE  540 (566)
Q Consensus       516 ~C~~L~~lP~~~~~~l~~L~i~~~~  540 (566)
                      +| +++.+|......++.|+.++..
T Consensus       503 ~n-~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          503 SN-QLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             SS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             CC-cCCCCCHHHhhcccCCcEEEec
Confidence            97 7888876533333566555433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=2.1e-18  Score=179.22  Aligned_cols=239  Identities=18%  Similarity=0.162  Sum_probs=171.7

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +.+.+..+..+|..- ..+++.|++++|.+..++  .+..+++|++|++++|.+..++...|.++++|++|+|++| .++
T Consensus        48 v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~  125 (440)
T 3zyj_A           48 VICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLT  125 (440)
T ss_dssp             EECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCS
T ss_pred             EEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCC
Confidence            455555666666422 367889999998888765  4678889999999999888888766888999999999999 888


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK  339 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  339 (566)
                      .+|...      +..+++|++|++++| .++.+|...+.++++|++|++.+|.....             .....+.+++
T Consensus       126 ~~~~~~------~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------------i~~~~~~~l~  185 (440)
T 3zyj_A          126 TIPNGA------FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY-------------ISEGAFEGLS  185 (440)
T ss_dssp             SCCTTT------SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-------------ECTTTTTTCS
T ss_pred             eeCHhH------hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce-------------eCcchhhccc
Confidence            777543      688899999999998 78888876688899999999988655431             2233577788


Q ss_pred             CCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCc
Q 008415          340 HLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQ  419 (566)
Q Consensus       340 ~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~  419 (566)
                      +|+.|+++.+....++.    ...+.+|+.|++++ + .........+..+++|+.|++.+|.+..++..        ..
T Consensus       186 ~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~  251 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPN----LTPLIKLDELDLSG-N-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--------AF  251 (440)
T ss_dssp             SCCEEECTTSCCSSCCC----CTTCSSCCEEECTT-S-CCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------SS
T ss_pred             ccCeecCCCCcCccccc----cCCCcccCEEECCC-C-ccCccChhhhccCccCCEEECCCCceeEEChh--------hh
Confidence            88888888665444332    23346788888876 3 22222233567778888888888775544322        12


Q ss_pred             cCCCcccEEecccCcCCCCCch--hhccCCcceEeEeccc
Q 008415          420 SGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       420 ~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~  457 (566)
                      ..+++|+.|+|+++ .+..++.  +..+++|+.|+|++++
T Consensus       252 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          252 DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            35678888888875 5666554  6678888888887765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=3.2e-18  Score=188.10  Aligned_cols=126  Identities=22%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             EEecCCccccCCC--ccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          182 LVHAGVELTEAPK--FEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       182 ~~~~~~~~~~~~~--~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      +...+..+..++.  +..+.++++|++.+|.+..++.  +..+++|++|++++|.+..+|...|+++++|++|++++| .
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~  108 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-S  108 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-C
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-c
Confidence            4444444555543  5566889999999888877643  467889999999999888888866889999999999999 8


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++.+|..      .++++++|++|++++| .+..++.+.++++++|++|++++|.+..
T Consensus       109 l~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          109 IQKIKNN------PFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCCCCSC------TTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             cCccChh------HccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccc
Confidence            8776643      3788889999999988 6776654447888999999998887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=173.40  Aligned_cols=268  Identities=19%  Similarity=0.211  Sum_probs=196.6

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+...+..+..+|.. -..++++|++++|.+..++.  +..+++|++|++++|.+..++...|+++++|++|++++| .+
T Consensus        35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l  112 (353)
T 2z80_A           35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL  112 (353)
T ss_dssp             EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence            355566677777752 23689999999999998875  788999999999999999887666899999999999999 99


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG  337 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (566)
                      +.+|...      ++++++|++|++++| .++.+|. +.++.+++|++|++.+|....             ......++.
T Consensus       113 ~~~~~~~------~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------~~~~~~~~~  172 (353)
T 2z80_A          113 SNLSSSW------FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT-------------KIQRKDFAG  172 (353)
T ss_dssp             SSCCHHH------HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------EECTTTTTT
T ss_pred             CcCCHhH------hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc-------------ccCHHHccC
Confidence            8877653      789999999999999 8999987 448999999999999985332             123456888


Q ss_pred             CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccccccc
Q 008415          338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKL  417 (566)
Q Consensus       338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~  417 (566)
                      +++|+.|+++.+.....  .......+++|+.|++++ +. ........+..+++|+.|++++|.+..++....     .
T Consensus       173 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~-n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~  243 (353)
T 2z80_A          173 LTFLEELEIDASDLQSY--EPKSLKSIQNVSHLILHM-KQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-----S  243 (353)
T ss_dssp             CCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEEC-SC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred             CCCCCEEECCCCCcCcc--CHHHHhccccCCeecCCC-Cc-cccchhhhhhhcccccEEECCCCcccccccccc-----c
Confidence            99999999997654332  122334457899999997 32 222222234557899999999998544332211     1


Q ss_pred             CccCCCcccEEecccCcCCCC-----Cc-hhhccCCcceEeEecccCcccccccccccccccccCCC-Cccccccceeec
Q 008415          418 FQSGFRSLNTVSVHYCRKAKD-----LT-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSE-HNFFAQLEYLSI  490 (566)
Q Consensus       418 ~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~-~~~f~~L~~L~L  490 (566)
                      .....+.++.+++.++. +.+     +| .+..+++|++|++++|.. +.++             .. +..+++|+.|+|
T Consensus       244 ~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~-------------~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQL-KSVP-------------DGIFDRLTSLQKIWL  308 (353)
T ss_dssp             ---CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCC-------------TTTTTTCTTCCEEEC
T ss_pred             cccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCCC-CccC-------------HHHHhcCCCCCEEEe
Confidence            12345677888887753 322     33 378899999999998853 3443             23 478999999999


Q ss_pred             cccc
Q 008415          491 SWGT  494 (566)
Q Consensus       491 ~~~~  494 (566)
                      .+++
T Consensus       309 ~~N~  312 (353)
T 2z80_A          309 HTNP  312 (353)
T ss_dssp             CSSC
T ss_pred             eCCC
Confidence            9865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=2.2e-18  Score=179.76  Aligned_cols=240  Identities=20%  Similarity=0.179  Sum_probs=166.4

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+.+.+..+..+|.. -..++++|++.+|.+..++  .+..+++|++|++++|.+..++...|.++++|++|+|++| .+
T Consensus        58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l  135 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WL  135 (452)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cC
Confidence            344555566666642 2357888898888888763  4678888999999988888877666888889999999988 88


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.+|...      ++++++|++|++++| .++.+|...+.++++|++|++.+|.....             .....+..+
T Consensus       136 ~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-------------i~~~~~~~l  195 (452)
T 3zyi_A          136 TVIPSGA------FEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY-------------ISEGAFEGL  195 (452)
T ss_dssp             SBCCTTT------SSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-------------ECTTTTTTC
T ss_pred             CccChhh------hcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc-------------cChhhccCC
Confidence            8777554      678888999999888 78888876688888999999888655431             223356778


Q ss_pred             CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415          339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF  418 (566)
Q Consensus       339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~  418 (566)
                      ++|+.|+++.+....++.    ...+.+|+.|++++ + .........+..+++|+.|++++|.+..+...        .
T Consensus       196 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~  261 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSG-N-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN--------A  261 (452)
T ss_dssp             TTCCEEECTTSCCSSCCC----CTTCTTCCEEECTT-S-CCSEECGGGGTTCTTCCEEECTTSCCCEECTT--------T
T ss_pred             CCCCEEECCCCccccccc----ccccccccEEECcC-C-cCcccCcccccCccCCCEEEeCCCcCceECHH--------H
Confidence            888888887655443332    23346777788776 2 22222223466777888888887775443321        1


Q ss_pred             ccCCCcccEEecccCcCCCCCch--hhccCCcceEeEeccc
Q 008415          419 QSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       419 ~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~  457 (566)
                      ...+++|+.|+|+++ .+..++.  +..+++|+.|+|++++
T Consensus       262 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          262 FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            235677888888775 5555544  5667888888887664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=1.3e-18  Score=192.98  Aligned_cols=295  Identities=17%  Similarity=0.183  Sum_probs=192.4

Q ss_pred             ccccccccEEEeecCC-ccc--cc--------CCCCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCccc
Q 008415          195 FEEWEGAKRVSLMGNG-IRS--LS--------EIPTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLRKL  261 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~-~~~--l~--------~~~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~~l  261 (566)
                      +..+.+++.|.+++|. +..  +|        .+..+++|+.|++++|.+..+|.  . ++++++|++|+|++| .++.+
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-l~~L~~L~~L~Ls~N-~l~~l  588 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-LQKMVKLGLLDCVHN-KVRHL  588 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH-HTTCTTCCEEECTTS-CCCBC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh-hhcCCCCCEEECCCC-Ccccc
Confidence            5567899999999987 664  44        34566799999999998888888  5 899999999999999 88776


Q ss_pred             cccccccCcchhccccCcEecccCcccCCccchhhhcCCCC-CcEEEecCCCCcccccc--------cc--cccccCc--
Q 008415          262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSK-LEVLRLFGCGFWVVTEE--------EG--NVLCEDA--  328 (566)
Q Consensus       262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~-L~~L~l~~~~~~~~~~~--------~~--~~~~~~~--  328 (566)
                      | .       ++++++|++|++++| .+..+|.. +..+++ |++|++++|.+......        +.  ++.....  
T Consensus       589 p-~-------~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          589 E-A-------FGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             C-C-------CCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             h-h-------hcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence            6 3       577777777777777 66677766 777777 77777777765421000        00  0000000  


Q ss_pred             --cchHhhhc--CCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeec-------cccccCcceEE
Q 008415          329 --EPLMKELL--GSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLH-------LAYMENLQKFE  397 (566)
Q Consensus       329 --~~~~~~l~--~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------l~~~~~L~~L~  397 (566)
                        +..+..+.  .+.+|+.|+++.+....++...  ...+++|+.|++++ +. ...+....       +.++++|+.|+
T Consensus       659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--~~~l~~L~~L~Ls~-N~-L~~ip~~~~~~~~~~l~nl~~L~~L~  734 (876)
T 4ecn_A          659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--FATGSPISTIILSN-NL-MTSIPENSLKPKDGNYKNTYLLTTID  734 (876)
T ss_dssp             TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--HHTTCCCSEEECCS-CC-CSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred             ccccchhhhccccCCCcCEEEccCCcCCccCHHH--HccCCCCCEEECCC-Cc-CCccChHHhccccccccccCCccEEE
Confidence              11111222  2346777777765443222111  11346889999987 32 22221111       22345999999


Q ss_pred             EeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccC
Q 008415          398 LESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIG  476 (566)
Q Consensus       398 l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~  476 (566)
                      +++|.+..++..       .....+++|+.|+|+++ .+..+|. ++.+++|+.|+|++|..+..-   ...    ..+|
T Consensus       735 Ls~N~L~~lp~~-------l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N---~l~----~~ip  799 (876)
T 4ecn_A          735 LRFNKLTSLSDD-------FRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGN---RIL----RQWP  799 (876)
T ss_dssp             CCSSCCCCCCGG-------GSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCC---BCC----CCCC
T ss_pred             CCCCCCccchHH-------hhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccc---ccc----ccCh
Confidence            999995555421       21136899999999996 4555664 889999999999885521100   000    0134


Q ss_pred             CCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415          477 SEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLP  524 (566)
Q Consensus       477 ~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP  524 (566)
                      ..+..+++|+.|+|+++. +..+|...  +++|+.|++++|+ +..++
T Consensus       800 ~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~-l~~i~  843 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNP-NISID  843 (876)
T ss_dssp             TTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCT-TCEEE
T ss_pred             HHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCC-CCccC
Confidence            577889999999999975 58888653  4799999999986 54443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=3.8e-18  Score=177.93  Aligned_cols=244  Identities=17%  Similarity=0.139  Sum_probs=166.5

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..+.+...+..+..+|.. -.++|++|++++|.+..++...|+++++|++|+|++| .++.++..      .+.++++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~------~~~~l~~L~  126 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVG------AFNGLASLN  126 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT------TTTTCTTCC
T ss_pred             CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChh------hccCcccCC
Confidence            346677777788888753 3479999999999999887666999999999999999 99877643      479999999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|+|++| .++.+|.+.++.+++|++|++++|.+..              .....+.++++|+.|+++.++.  +..+..
T Consensus       127 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~l~~~~~--l~~i~~  189 (452)
T 3zyi_A          127 TLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIES--------------IPSYAFNRVPSLMRLDLGELKK--LEYISE  189 (452)
T ss_dssp             EEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCE--------------ECTTTTTTCTTCCEEECCCCTT--CCEECT
T ss_pred             EEECCCC-cCCccChhhhcccCCCCEEECCCCCcce--------------eCHhHHhcCCcccEEeCCCCCC--ccccCh
Confidence            9999999 8999998778999999999999998765              2344678889999988875321  111111


Q ss_pred             -CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC
Q 008415          360 -YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD  438 (566)
Q Consensus       360 -~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~  438 (566)
                       ....+.+|+.|++++ +. ..  .++.+..+++|+.|++++|.+..++..        ....+++|+.|+|+++. +..
T Consensus       190 ~~~~~l~~L~~L~L~~-n~-l~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~n~-l~~  256 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGM-CN-IK--DMPNLTPLVGLEELEMSGNHFPEIRPG--------SFHGLSSLKKLWVMNSQ-VSL  256 (452)
T ss_dssp             TTTTTCTTCCEEECTT-SC-CS--SCCCCTTCTTCCEEECTTSCCSEECGG--------GGTTCTTCCEEECTTSC-CCE
T ss_pred             hhccCCCCCCEEECCC-Cc-cc--ccccccccccccEEECcCCcCcccCcc--------cccCccCCCEEEeCCCc-Cce
Confidence             122335677777765 32 11  223456667777777777764433221        11356677777777653 333


Q ss_pred             Cc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccc
Q 008415          439 LT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT  494 (566)
Q Consensus       439 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~  494 (566)
                      ++  .+..+++|+.|+|++|. +..+..            ..+..+++|+.|+|.+.+
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNN-LSSLPH------------DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC-CSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred             ECHHHhcCCCCCCEEECCCCc-CCccCh------------HHhccccCCCEEEccCCC
Confidence            32  25667777777777663 333321            234556777777776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=5.1e-18  Score=176.34  Aligned_cols=244  Identities=16%  Similarity=0.137  Sum_probs=171.0

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..+.+...+..+..+|.. -.++++.|++++|.+..++...|.++++|++|+|++| .++.++..      .+.++++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~------~~~~l~~L~  115 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIG------AFNGLANLN  115 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGG------GGTTCSSCC
T ss_pred             CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChh------hccCCccCC
Confidence            345777778888888753 3479999999999999888766999999999999999 99877643      379999999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| .++.+|.+.+..+++|++|++++|.+..              .....+..+++|+.|++..++.  +..+..
T Consensus       116 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------~~~~~~~~l~~L~~L~l~~~~~--l~~i~~  178 (440)
T 3zyj_A          116 TLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIES--------------IPSYAFNRIPSLRRLDLGELKR--LSYISE  178 (440)
T ss_dssp             EEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCE--------------ECTTTTTTCTTCCEEECCCCTT--CCEECT
T ss_pred             EEECCCC-cCCeeCHhHhhccccCceeeCCCCcccc--------------cCHHHhhhCcccCEeCCCCCCC--cceeCc
Confidence            9999999 8999998669999999999999998765              3344678889999998875321  111111


Q ss_pred             -CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC
Q 008415          360 -YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD  438 (566)
Q Consensus       360 -~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~  438 (566)
                       ....+.+|+.|++++ +. ..  .++.+..+++|+.|++++|.+..++..        ....+++|++|+|+++ .+..
T Consensus       179 ~~~~~l~~L~~L~L~~-n~-l~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~  245 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAM-CN-LR--EIPNLTPLIKLDELDLSGNHLSAIRPG--------SFQGLMHLQKLWMIQS-QIQV  245 (440)
T ss_dssp             TTTTTCSSCCEEECTT-SC-CS--SCCCCTTCSSCCEEECTTSCCCEECTT--------TTTTCTTCCEEECTTC-CCCE
T ss_pred             chhhcccccCeecCCC-Cc-Cc--cccccCCCcccCEEECCCCccCccChh--------hhccCccCCEEECCCC-ceeE
Confidence             122346777777776 32 12  233466677777777777774443221        1235677777777775 3444


Q ss_pred             Cc--hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccc
Q 008415          439 LT--WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT  494 (566)
Q Consensus       439 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~  494 (566)
                      ++  .+..+++|++|+|++|. ++.+..            ..+..+++|+.|+|.+.+
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNN-LTLLPH------------DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSC-CCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred             EChhhhcCCCCCCEEECCCCC-CCccCh------------hHhccccCCCEEEcCCCC
Confidence            32  26667777777777763 333321            234566777777776643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=2.3e-18  Score=169.99  Aligned_cols=102  Identities=22%  Similarity=0.315  Sum_probs=51.7

Q ss_pred             EEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecc
Q 008415          204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNL  283 (566)
Q Consensus       204 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L  283 (566)
                      +...++.++.+|. .-.++|++|++++|.+..+|..+|+++++|++|++++| .++.+.    ..|..+..+++|++|++
T Consensus        12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKG----CCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEE----EEEHHHHSCSCCCEEEC
T ss_pred             EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCccc----CcccccccccccCEEEC
Confidence            4444444444443 12245555555555555555544555555555555555 544321    11222345555555555


Q ss_pred             cCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      ++| .+..+|.. +..+++|++|++++|.+
T Consensus        86 s~n-~i~~l~~~-~~~l~~L~~L~l~~n~l  113 (306)
T 2z66_A           86 SFN-GVITMSSN-FLGLEQLEHLDFQHSNL  113 (306)
T ss_dssp             CSC-SEEEEEEE-EETCTTCCEEECTTSEE
T ss_pred             CCC-ccccChhh-cCCCCCCCEEECCCCcc
Confidence            555 45555554 55555555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.5e-17  Score=186.89  Aligned_cols=300  Identities=17%  Similarity=0.155  Sum_probs=196.7

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      +.++.++++++.+|.  ..++|++|++++|.+..++...|+++++|++|+|++|..+..++      |..+++|++|++|
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~------~~~f~~L~~L~~L   78 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID------KEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC------TTTTSSCTTCCEE
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC------HHHhcCCCCCCEE
Confidence            456677788888987  66899999999999988765559999999999999993344443      4458999999999


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhh--hcCCCCCceEEEEEcCccchhcccc
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE--LLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++| .+..++++.++++++|++|++++|....              ..+..  ++++++|+.|+++.+...... ...
T Consensus        79 ~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~  142 (844)
T 3j0a_A           79 DLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSD--------------AVLKDGYFRNLKALTRLDLSKNQIRSLY-LHP  142 (844)
T ss_dssp             ECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSS--------------CCSTTCCCSSCSSCCEEEEESCCCCCCC-CCG
T ss_pred             ECCCC-cCcccCHhHccCCcccCEeeCcCCCCCc--------------ccccCccccccCCCCEEECCCCcccccc-cch
Confidence            99999 7888744449999999999999998764              23333  889999999999976543321 111


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccc--cCcceEEEeccc-cceeeeccccc-----------------------
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYM--ENLQKFELESCN-LEEMKIDSTEE-----------------------  413 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~-l~~l~~~~~~~-----------------------  413 (566)
                      ....+++|+.|++++ +. ........+..+  ++|+.|++++|. ....+......                       
T Consensus       143 ~~~~L~~L~~L~Ls~-N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  220 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSS-NQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI  220 (844)
T ss_dssp             GGGTCSSCCEEEEES-SC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred             hHhhCCCCCEEECCC-Cc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH
Confidence            233457899999987 32 121111223333  455555555554 22111110000                       


Q ss_pred             cc------------------------------------ccCccCCCcccEEecccCcCCCCC-c-hhhccCCcceEeEec
Q 008415          414 VK------------------------------------KLFQSGFRSLNTVSVHYCRKAKDL-T-WLVFVQNLKVLRIGD  455 (566)
Q Consensus       414 ~~------------------------------------~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~  455 (566)
                      +.                                    .......++|+.|+++++. +..+ + .++.+++|+.|++++
T Consensus       221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~  299 (844)
T 3j0a_A          221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAY  299 (844)
T ss_dssp             TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEES
T ss_pred             HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCC
Confidence            00                                    0000012567777776653 3332 2 266777888888877


Q ss_pred             ccCcccccccccccccccccCCCCccccccceeecccccccccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccccCCc
Q 008415          456 CYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSV-YPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERR  534 (566)
Q Consensus       456 ~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L  534 (566)
                      |.... +.            +..+..+++|+.|+|+++. ++.+ +.....+++|+.|++.++ +++.+|......++.|
T Consensus       300 n~i~~-~~------------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L  364 (844)
T 3j0a_A          300 NKINK-IA------------DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKL  364 (844)
T ss_dssp             CCCCE-EC------------TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCC
T ss_pred             CcCCC-CC------------hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCC
Confidence            64322 22            2356788999999998864 5555 445667899999999997 6888776533334666


Q ss_pred             EEEechhhh
Q 008415          535 VVIEGEKKW  543 (566)
Q Consensus       535 ~i~~~~~~~  543 (566)
                      +.++.....
T Consensus       365 ~~L~Ls~N~  373 (844)
T 3j0a_A          365 QTLDLRDNA  373 (844)
T ss_dssp             CEEEEETCC
T ss_pred             CEEECCCCC
Confidence            666555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=5.6e-18  Score=167.15  Aligned_cols=144  Identities=21%  Similarity=0.217  Sum_probs=116.3

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCccccc---chHHHhcCccCCEEecCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEI---TDGFFQSMSTLRVLSLRIN  255 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l---p~~~~~~l~~Lr~L~L~~~  255 (566)
                      .+...+..+..+|. ....++++|++.+|.+..++.  +..+++|++|++++|.+..+   +.. +..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC
Confidence            35556666777765 223689999999999998875  57899999999999988755   455 678999999999999


Q ss_pred             CCCccccccccccCcchhccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhh
Q 008415          256 ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE  334 (566)
Q Consensus       256 ~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (566)
                       .+..+|..       +..+++|++|++++| .++.+|. ..+..+++|++|++++|....              .....
T Consensus        89 -~i~~l~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~  145 (306)
T 2z66_A           89 -GVITMSSN-------FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------AFNGI  145 (306)
T ss_dssp             -SEEEEEEE-------EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE--------------CSTTT
T ss_pred             -ccccChhh-------cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc--------------cchhh
Confidence             88776654       588999999999999 7888875 348999999999999998754              34455


Q ss_pred             hcCCCCCceEEEEEc
Q 008415          335 LLGSKHLNVLSWTFR  349 (566)
Q Consensus       335 l~~L~~L~~L~i~~~  349 (566)
                      ++.+++|+.|+++.+
T Consensus       146 ~~~l~~L~~L~l~~n  160 (306)
T 2z66_A          146 FNGLSSLEVLKMAGN  160 (306)
T ss_dssp             TTTCTTCCEEECTTC
T ss_pred             cccCcCCCEEECCCC
Confidence            778888888888743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=1.4e-17  Score=178.64  Aligned_cols=252  Identities=19%  Similarity=0.107  Sum_probs=154.8

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK  260 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~  260 (566)
                      .+...+..+..+|.... .+++.|.+.+|.+..+|.  .+++|++|++++|.+..+|.    .+++|++|++++| .++.
T Consensus        44 ~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~  115 (622)
T 3g06_A           44 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTH  115 (622)
T ss_dssp             EEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCC
T ss_pred             EEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCC
Confidence            45555556666654222 577778887777777765  56778888888777777775    4677778888777 7766


Q ss_pred             ccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCC
Q 008415          261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH  340 (566)
Q Consensus       261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  340 (566)
                      +|.          .+.+|++|++++| .++.+|..    +++|++|++++|.+..            .   +   ..+.+
T Consensus       116 l~~----------~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~------------l---~---~~~~~  162 (622)
T 3g06_A          116 LPA----------LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS------------L---P---ALPSE  162 (622)
T ss_dssp             CCC----------CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC------------C---C---CCCTT
T ss_pred             CCC----------CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCC------------c---C---CccCC
Confidence            553          3467777788777 67777763    3777788887776543            1   1   12355


Q ss_pred             CceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCcc
Q 008415          341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQS  420 (566)
Q Consensus       341 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~  420 (566)
                      |+.|++..+....++      ....+|+.|++++ +. ...  ++.  .+++|+.|++.+|.+..++            .
T Consensus       163 L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~-N~-l~~--l~~--~~~~L~~L~L~~N~l~~l~------------~  218 (622)
T 3g06_A          163 LCKLWAYNNQLTSLP------MLPSGLQELSVSD-NQ-LAS--LPT--LPSELYKLWAYNNRLTSLP------------A  218 (622)
T ss_dssp             CCEEECCSSCCSCCC------CCCTTCCEEECCS-SC-CSC--CCC--CCTTCCEEECCSSCCSSCC------------C
T ss_pred             CCEEECCCCCCCCCc------ccCCCCcEEECCC-CC-CCC--CCC--ccchhhEEECcCCcccccC------------C
Confidence            666666654433322      2235677777765 22 111  111  2356777777776644332            1


Q ss_pred             CCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccC
Q 008415          421 GFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVY  500 (566)
Q Consensus       421 ~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~  500 (566)
                      .+++|+.|+++++ .++.+|  ..+++|+.|++++|. ++.++             .   .+++|+.|+|+++ .++.+|
T Consensus       219 ~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp-------------~---~~~~L~~L~Ls~N-~L~~lp  277 (622)
T 3g06_A          219 LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP-------------M---LPSGLLSLSVYRN-QLTRLP  277 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC-------------C---CCTTCCEEECCSS-CCCSCC
T ss_pred             CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC-------------c---ccccCcEEeCCCC-CCCcCC
Confidence            2466777777764 555555  445777777777663 33222             1   4567777777765 466666


Q ss_pred             CCCCCCCCccEEeecCCC
Q 008415          501 PNPLPFPKLKKIDVCHCP  518 (566)
Q Consensus       501 ~~~~~~p~L~~L~i~~C~  518 (566)
                      .....+++|+.|++.+++
T Consensus       278 ~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          278 ESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             GGGGGSCTTCEEECCSCC
T ss_pred             HHHhhccccCEEEecCCC
Confidence            555667777777777754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=6.9e-17  Score=173.35  Aligned_cols=252  Identities=19%  Similarity=0.154  Sum_probs=154.6

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      +++.+++.++.+..+|.... ++|++|++++|.+..+|.    .+++|++|+|++| .++.+|.          .+++|+
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----------~l~~L~  104 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----------LPPGLL  104 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----------CCTTCC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----------CCCCCC
Confidence            46777777777777665332 677777777777777765    3677777777777 6765552          456777


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| .++.+|.    .+++|++|++++|.+..               .+.   .+++|+.|+++.+....++.   
T Consensus       105 ~L~Ls~N-~l~~l~~----~l~~L~~L~L~~N~l~~---------------lp~---~l~~L~~L~Ls~N~l~~l~~---  158 (622)
T 3g06_A          105 ELSIFSN-PLTHLPA----LPSGLCKLWIFGNQLTS---------------LPV---LPPGLQELSVSDNQLASLPA---  158 (622)
T ss_dssp             EEEECSC-CCCCCCC----CCTTCCEEECCSSCCSC---------------CCC---CCTTCCEEECCSSCCSCCCC---
T ss_pred             EEECcCC-cCCCCCC----CCCCcCEEECCCCCCCc---------------CCC---CCCCCCEEECcCCcCCCcCC---
Confidence            7777777 6777765    35677777777776543               111   23667777777554333322   


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                         ...+|+.|.+.+ +. ...+  +  ..+++|+.|++++|.+..++            ..+++|+.|+++++ .+..+
T Consensus       159 ---~~~~L~~L~L~~-N~-l~~l--~--~~~~~L~~L~Ls~N~l~~l~------------~~~~~L~~L~L~~N-~l~~l  216 (622)
T 3g06_A          159 ---LPSELCKLWAYN-NQ-LTSL--P--MLPSGLQELSVSDNQLASLP------------TLPSELYKLWAYNN-RLTSL  216 (622)
T ss_dssp             ---CCTTCCEEECCS-SC-CSCC--C--CCCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSC
T ss_pred             ---ccCCCCEEECCC-CC-CCCC--c--ccCCCCcEEECCCCCCCCCC------------CccchhhEEECcCC-ccccc
Confidence               225667777765 21 1211  1  34567777777777644332            13467777777764 45555


Q ss_pred             chhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCC
Q 008415          440 TWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQ  519 (566)
Q Consensus       440 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~  519 (566)
                      |..  +++|+.|++++|. ++.++                ..+++|+.|+|+++ .++.++.   .+++|+.|++.+| +
T Consensus       217 ~~~--~~~L~~L~Ls~N~-L~~lp----------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~  272 (622)
T 3g06_A          217 PAL--PSGLKELIVSGNR-LTSLP----------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-Q  272 (622)
T ss_dssp             CCC--CTTCCEEECCSSC-CSCCC----------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-C
T ss_pred             CCC--CCCCCEEEccCCc-cCcCC----------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-C
Confidence            532  4677777777663 22221                24567777777775 4666664   5677777777775 6


Q ss_pred             CCCCCCCCccccCCcEEEech
Q 008415          520 LKKLPLNSSSAKERRVVIEGE  540 (566)
Q Consensus       520 L~~lP~~~~~~l~~L~i~~~~  540 (566)
                      |+.+|..+..+ +.|+.++..
T Consensus       273 L~~lp~~l~~l-~~L~~L~L~  292 (622)
T 3g06_A          273 LTRLPESLIHL-SSETTVNLE  292 (622)
T ss_dssp             CCSCCGGGGGS-CTTCEEECC
T ss_pred             CCcCCHHHhhc-cccCEEEec
Confidence            77777665544 555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=3.2e-17  Score=159.95  Aligned_cols=223  Identities=17%  Similarity=0.171  Sum_probs=116.0

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      +.++..++.+..+|. ...++|++|+++++.+..++...|..+++|++|++++| .++.++      |..++++++|++|
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~------~~~~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID------AAAFTGLALLEQL   85 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEEC------TTTTTTCTTCCEE
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeC------HhhcCCccCCCEE
Confidence            334444444444442 22345555555555555555444555555555555555 554432      1224555555555


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCC
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYP  361 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~  361 (566)
                      ++++|..++.++...+..+++|++|++.+|.+..              ..+..++.+++|+.|+++.+....+..  ...
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~  149 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--------------LGPGLFRGLAALQYLYLQDNALQALPD--DTF  149 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC--------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTT
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE--------------ECHhHhhCCcCCCEEECCCCcccccCH--hHh
Confidence            5555522555533225555555555555555433              123334455555555555332211110  011


Q ss_pred             cccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch
Q 008415          362 KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW  441 (566)
Q Consensus       362 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~  441 (566)
                      ..+++|+.|++++ + .........+..+++|+.|++++|.+..+..        .....+++|+.|+++++ .+..++.
T Consensus       150 ~~l~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~  218 (285)
T 1ozn_A          150 RDLGNLTHLFLHG-N-RISSVPERAFRGLHSLDRLLLHQNRVAHVHP--------HAFRDLGRLMTLYLFAN-NLSALPT  218 (285)
T ss_dssp             TTCTTCCEEECCS-S-CCCEECTTTTTTCTTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred             ccCCCccEEECCC-C-cccccCHHHhcCccccCEEECCCCcccccCH--------hHccCcccccEeeCCCC-cCCcCCH
Confidence            2224455555554 2 1121111236677888888888888444322        12235788888888886 4555543


Q ss_pred             --hhccCCcceEeEecccCc
Q 008415          442 --LVFVQNLKVLRIGDCYDM  459 (566)
Q Consensus       442 --l~~l~~L~~L~L~~~~~l  459 (566)
                        +..+++|++|++++++..
T Consensus       219 ~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          219 EALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             HHHTTCTTCCEEECCSSCEE
T ss_pred             HHcccCcccCEEeccCCCcc
Confidence              777888888888877643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=9.5e-18  Score=165.94  Aligned_cols=229  Identities=17%  Similarity=0.134  Sum_probs=169.3

Q ss_pred             CccccccccEEEeec-CCccc-cc-CCCCCCCccEEEecCCccc-ccchHHHhcCccCCEEecCCCCCCccccccccccC
Q 008415          194 KFEEWEGAKRVSLMG-NGIRS-LS-EIPTCPRLVTLLLGGNRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLP  269 (566)
Q Consensus       194 ~~~~~~~lr~Lsl~~-~~~~~-l~-~~~~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP  269 (566)
                      .+..+.++++|++.+ |.+.. +| .+..+++|++|++++|.+. .+|.. ++++++|++|++++| .++      ..+|
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~------~~~p  142 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALS------GTLP  142 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEE------SCCC
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccC------CcCC
Confidence            355678999999994 77763 44 4688999999999999987 67776 899999999999999 886      2345


Q ss_pred             cchhccccCcEecccCcccCC-ccchhhhcCCC-CCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          270 QELKALEKLRYLNLDYTRFLS-IIPHQLISGFS-KLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       270 ~~i~~L~~L~~L~L~~~~~l~-~lP~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      ..++++++|++|++++| .++ .+|.. ++.++ +|++|++++|.+..              ..+..++.++ |+.|+++
T Consensus       143 ~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~--------------~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTG--------------KIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             GGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEE--------------ECCGGGGGCC-CSEEECC
T ss_pred             hHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeec--------------cCChHHhCCc-ccEEECc
Confidence            55799999999999999 677 78987 99998 99999999998754              3445556665 7777776


Q ss_pred             EcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccE
Q 008415          348 FRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNT  427 (566)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~  427 (566)
                      .+..                     ..       .....+..+++|+.|++++|.+....         +....+++|++
T Consensus       206 ~N~l---------------------~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~L~~  248 (313)
T 1ogq_A          206 RNML---------------------EG-------DASVLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSKNLNG  248 (313)
T ss_dssp             SSEE---------------------EE-------CCGGGCCTTSCCSEEECCSSEECCBG---------GGCCCCTTCCE
T ss_pred             CCcc---------------------cC-------cCCHHHhcCCCCCEEECCCCceeeec---------CcccccCCCCE
Confidence            3211                     00       00123566788999999888843211         11245789999


Q ss_pred             EecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc
Q 008415          428 VSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS  498 (566)
Q Consensus       428 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~  498 (566)
                      |+++++.....+|. +..+++|++|++++|.....++              ....+++|+.|++.+.+.+..
T Consensus       249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip--------------~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--------------QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--------------CSTTGGGSCGGGTCSSSEEES
T ss_pred             EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC--------------CCccccccChHHhcCCCCccC
Confidence            99988754435554 8889999999998886544433              236788888888888776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=1.6e-17  Score=164.65  Aligned_cols=246  Identities=15%  Similarity=0.097  Sum_probs=168.2

Q ss_pred             CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415          218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI  297 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i  297 (566)
                      ..+++|++|++++|.+..++...++.+++|++|+|++| .++.+++        ++.+++|++|++++| .++.+|.   
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--------~~~l~~L~~L~Ls~n-~l~~l~~---   97 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--------LESLSTLRTLDLNNN-YVQELLV---   97 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--------ETTCTTCCEEECCSS-EEEEEEE---
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--------hhhcCCCCEEECcCC-ccccccC---
Confidence            55679999999999998888766899999999999999 8876543        688999999999999 7877664   


Q ss_pred             cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415          298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH  377 (566)
Q Consensus       298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  377 (566)
                        .++|++|++++|.+...              .   ...+++|+.|+++.+.......  .....+.+|+.|++++ +.
T Consensus        98 --~~~L~~L~l~~n~l~~~--------------~---~~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~-N~  155 (317)
T 3o53_A           98 --GPSIETLHAANNNISRV--------------S---CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKL-NE  155 (317)
T ss_dssp             --CTTCCEEECCSSCCSEE--------------E---ECCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTT-SC
T ss_pred             --CCCcCEEECCCCccCCc--------------C---ccccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCC-CC
Confidence              48999999999887651              1   1236778888888665433322  1223346788888876 32


Q ss_pred             CCCCeeeecc-ccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC-chhhccCCcceEeEec
Q 008415          378 TSPPFNVLHL-AYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL-TWLVFVQNLKVLRIGD  455 (566)
Q Consensus       378 ~~~~~~~~~l-~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~  455 (566)
                       ........+ ..+++|+.|++++|.+..++          ....+++|+.|+++++ .+..+ +.+..+++|++|++++
T Consensus       156 -l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          156 -IDTVNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN  223 (317)
T ss_dssp             -CCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTT
T ss_pred             -CCcccHHHHhhccCcCCEEECCCCcCcccc----------cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcC
Confidence             222222233 35678888888888755432          1124778888888875 45554 3477788888888887


Q ss_pred             ccCcccccccccccccccccCCCCccccccceeeccccccc-cccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415          456 CYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL-KSVYPNPLPFPKLKKIDVCHCPQLKKLP  524 (566)
Q Consensus       456 ~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L-~~l~~~~~~~p~L~~L~i~~C~~L~~lP  524 (566)
                      |. ++.++             ..+..+++|+.|++.+++-- ..++.....+++|+.|++.+|+.++..+
T Consensus       224 N~-l~~l~-------------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          224 NK-LVLIE-------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             SC-CCEEC-------------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             Cc-ccchh-------------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            74 33332             34667788888888875422 1233333457778888887766666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=1.1e-16  Score=156.16  Aligned_cols=221  Identities=19%  Similarity=0.187  Sum_probs=167.9

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC-C
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS-L  258 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~-i  258 (566)
                      +...+.++..+|. ....++++|+++++.+..++.  +..+++|++|++++|.+..++...++.+++|++|++++| . +
T Consensus        16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~l   93 (285)
T 1ozn_A           16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN-AQL   93 (285)
T ss_dssp             EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC-TTC
T ss_pred             EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC-CCc
Confidence            4455556666664 234789999999999998873  688999999999999998885555899999999999999 6 8


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.++.      ..+..+++|++|++++| .++.++...+..+++|++|++++|.+..              .....++.+
T Consensus        94 ~~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l  152 (285)
T 1ozn_A           94 RSVDP------ATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA--------------LPDDTFRDL  152 (285)
T ss_dssp             CCCCT------TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred             cccCH------HHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc--------------cCHhHhccC
Confidence            76643      34789999999999999 7888866558999999999999998765              234457889


Q ss_pred             CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415          339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF  418 (566)
Q Consensus       339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~  418 (566)
                      ++|+.|+++.+....+..  .....+.+|+.|++++ +. ........+..+++|+.|++++|.+..++.+.        
T Consensus       153 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~-n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------  220 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQ-NR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--------  220 (285)
T ss_dssp             TTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCS-SC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--------
T ss_pred             CCccEEECCCCcccccCH--HHhcCccccCEEECCC-Cc-ccccCHhHccCcccccEeeCCCCcCCcCCHHH--------
Confidence            999999998765433222  1133457899999997 32 22232335778899999999999855443221        


Q ss_pred             ccCCCcccEEecccCcCCC
Q 008415          419 QSGFRSLNTVSVHYCRKAK  437 (566)
Q Consensus       419 ~~~l~~L~~L~L~~c~~l~  437 (566)
                      ...+++|+.|++++++..-
T Consensus       221 ~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             HTTCTTCCEEECCSSCEEC
T ss_pred             cccCcccCEEeccCCCccC
Confidence            2467999999999875433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=2.9e-16  Score=163.26  Aligned_cols=188  Identities=19%  Similarity=0.195  Sum_probs=108.1

Q ss_pred             EecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccc
Q 008415          183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLP  262 (566)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp  262 (566)
                      ...+..+..+|.  ...+++++++++|.+..++...  ++|++|++++|.+..+| . ++++++|++|++++| .++.+|
T Consensus        97 ~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp  169 (454)
T 1jl5_A           97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLP  169 (454)
T ss_dssp             ECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCC
T ss_pred             EccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccC
Confidence            333444444443  2357777777777776665432  68888888888888887 3 788888999999888 887766


Q ss_pred             ccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccc---c--ccccccCccchHhhhcC
Q 008415          263 SGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEE---E--GNVLCEDAEPLMKELLG  337 (566)
Q Consensus       263 ~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~---~--~~~~~~~~~~~~~~l~~  337 (566)
                      ..+          .+|++|++++| .++.+|.  ++.+++|++|++.+|........   +  .++...... .+.+++.
T Consensus       170 ~~~----------~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~~~~  235 (454)
T 1jl5_A          170 DLP----------PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPELQN  235 (454)
T ss_dssp             CCC----------TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCCCTT
T ss_pred             CCc----------ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccccCC
Confidence            432          36777777777 6777773  77777777777777665431000   0  000000000 1223566


Q ss_pred             CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEecccc
Q 008415          338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNL  403 (566)
Q Consensus       338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  403 (566)
                      +++|+.|+++.+....++.      ...+|+.|++++ +. ...  ++.  .+++|+.|++++|.+
T Consensus       236 l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~-N~-l~~--l~~--~~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKTLPD------LPPSLEALNVRD-NY-LTD--LPE--LPQSLTFLDVSENIF  289 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCS------CCTTCCEEECCS-SC-CSC--CCC--CCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCCcccc------cccccCEEECCC-Cc-ccc--cCc--ccCcCCEEECcCCcc
Confidence            6677777776543332221      124666666665 32 111  111  125666666666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=4.5e-18  Score=168.66  Aligned_cols=265  Identities=16%  Similarity=0.102  Sum_probs=193.5

Q ss_pred             cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ..++++|++++|.+..++  .+..+++|++|++++|.+...++  +..+++|++|++++| .++.+|           ..
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~-----------~~   98 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL-----------VG   98 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE-----------EC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc-----------CC
Confidence            358999999999988875  46889999999999998887665  788999999999999 887644           33


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ  355 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~  355 (566)
                      ++|++|++++| .++.+|..   .+++|++|++++|.+..              .....++.+++|+.|+++.+......
T Consensus        99 ~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~--------------~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           99 PSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             TTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCS--------------GGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCC--------------ccchhhhccCCCCEEECCCCCCCccc
Confidence            78999999999 78888764   47889999999988765              23445677888999888865433321


Q ss_pred             ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcC
Q 008415          356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK  435 (566)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~  435 (566)
                      . ......+.+|+.|++++ +. ..  .......+++|+.|++++|.+..++..         ...+++|+.|+++++ .
T Consensus       161 ~-~~~~~~l~~L~~L~L~~-N~-l~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------~~~l~~L~~L~L~~N-~  225 (317)
T 3o53_A          161 F-AELAASSDTLEHLNLQY-NF-IY--DVKGQVVFAKLKTLDLSSNKLAFMGPE---------FQSAAGVTWISLRNN-K  225 (317)
T ss_dssp             G-GGGGGGTTTCCEEECTT-SC-CC--EEECCCCCTTCCEEECCSSCCCEECGG---------GGGGTTCSEEECTTS-C
T ss_pred             H-HHHhhccCcCCEEECCC-Cc-Cc--ccccccccccCCEEECCCCcCCcchhh---------hcccCcccEEECcCC-c
Confidence            1 00112246899999987 42 22  224455689999999999996655422         246799999999996 5


Q ss_pred             CCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEee
Q 008415          436 AKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDV  514 (566)
Q Consensus       436 l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i  514 (566)
                      +..+|. +..+++|+.|++++++......            +..+..+++|+.|.+.+++.++.........+.+....-
T Consensus       226 l~~l~~~~~~l~~L~~L~l~~N~~~~~~~------------~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~  293 (317)
T 3o53_A          226 LVLIEKALRFSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA  293 (317)
T ss_dssp             CCEECTTCCCCTTCCEEECTTCCCBHHHH------------HHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETT
T ss_pred             ccchhhHhhcCCCCCEEEccCCCccCcCH------------HHHHhccccceEEECCCchhccCCchhccCCCceecccc
Confidence            666654 7889999999999987652211            124667899999999988888776554455555555555


Q ss_pred             cCCCCCC
Q 008415          515 CHCPQLK  521 (566)
Q Consensus       515 ~~C~~L~  521 (566)
                      ..|..+.
T Consensus       294 ~cc~~l~  300 (317)
T 3o53_A          294 YCCEDLP  300 (317)
T ss_dssp             EEEBCCT
T ss_pred             eeeccCC
Confidence            5565554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.72  E-value=2.3e-16  Score=164.04  Aligned_cols=263  Identities=18%  Similarity=0.181  Sum_probs=149.5

Q ss_pred             cCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc
Q 008415          185 AGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG  264 (566)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~  264 (566)
                      .+..+..+|....+.+++++++.+|.+..+|..  ..+|++|++++|.+..+| . ++++++|++|++++| .++.+|..
T Consensus       139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N-~l~~l~~~  213 (454)
T 1jl5_A          139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNN-SLKKLPDL  213 (454)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSSCCCC
T ss_pred             cCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCC-cCCcCCCC
Confidence            333444445455555666666666666555433  246666666666666665 2 566777777777777 66655532


Q ss_pred             ccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceE
Q 008415          265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVL  344 (566)
Q Consensus       265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L  344 (566)
                                ..+|++|++++| .++.+|.  ++.+++|++|++++|....            .   +.   .+++|+.|
T Consensus       214 ----------~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~------------l---~~---~~~~L~~L  262 (454)
T 1jl5_A          214 ----------PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT------------L---PD---LPPSLEAL  262 (454)
T ss_dssp             ----------CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS------------C---CS---CCTTCCEE
T ss_pred             ----------cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc------------c---cc---cccccCEE
Confidence                      147888888888 7788885  8888899999998887653            1   11   23688888


Q ss_pred             EEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCc
Q 008415          345 SWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRS  424 (566)
Q Consensus       345 ~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~  424 (566)
                      +++.+....++..      ..+|+.|++++ +. ...  +..+  .++|+.|++++|.+..++            ...++
T Consensus       263 ~l~~N~l~~l~~~------~~~L~~L~ls~-N~-l~~--l~~~--~~~L~~L~l~~N~l~~i~------------~~~~~  318 (454)
T 1jl5_A          263 NVRDNYLTDLPEL------PQSLTFLDVSE-NI-FSG--LSEL--PPNLYYLNASSNEIRSLC------------DLPPS  318 (454)
T ss_dssp             ECCSSCCSCCCCC------CTTCCEEECCS-SC-CSE--ESCC--CTTCCEEECCSSCCSEEC------------CCCTT
T ss_pred             ECCCCcccccCcc------cCcCCEEECcC-Cc-cCc--ccCc--CCcCCEEECcCCcCCccc------------CCcCc
Confidence            8886644433322      26788888887 32 111  1112  268899999888854332            11258


Q ss_pred             ccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccc---cCC
Q 008415          425 LNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKS---VYP  501 (566)
Q Consensus       425 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~---l~~  501 (566)
                      |+.|+++++ .+..+|..  +++|++|++++|. ++.++             .   .+++|+.|+++++. ++.   +|.
T Consensus       319 L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~-l~~lp-------------~---~l~~L~~L~L~~N~-l~~l~~ip~  377 (454)
T 1jl5_A          319 LEELNVSNN-KLIELPAL--PPRLERLIASFNH-LAEVP-------------E---LPQNLKQLHVEYNP-LREFPDIPE  377 (454)
T ss_dssp             CCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCCC-------------C---CCTTCCEEECCSSC-CSSCCCCCT
T ss_pred             CCEEECCCC-cccccccc--CCcCCEEECCCCc-ccccc-------------c---hhhhccEEECCCCC-CCcCCCChH
Confidence            888888875 45566543  5788888888774 33322             2   46788888888753 443   333


Q ss_pred             CCCCC-------------CCccEEeecCCCCCCC---CCCCCcc
Q 008415          502 NPLPF-------------PKLKKIDVCHCPQLKK---LPLNSSS  529 (566)
Q Consensus       502 ~~~~~-------------p~L~~L~i~~C~~L~~---lP~~~~~  529 (566)
                      ....+             ++|+.|+++++ .++.   +|..+..
T Consensus       378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          378 SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIPESVED  420 (454)
T ss_dssp             TCCEEECCC-----------------------------------
T ss_pred             HHHhhhhcccccccccccCcCCEEECCCC-cCCccccchhhHhh
Confidence            33333             78999999885 4654   5554433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.3e-16  Score=154.18  Aligned_cols=198  Identities=19%  Similarity=0.221  Sum_probs=140.3

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..+.+++.++.+..+|... .++|+.|++++|.+..++...|+++++|++|++++| .++.+|..+      +.++++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~------~~~l~~L~   88 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI------FKELKNLE   88 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT------TSSCTTCC
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh------hcCCCCCC
Confidence            5677888888888877532 368999999999888888766888999999999999 888777654      67889999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| .++.+|.+.+..+++|++|++.+|.+..              .....++.+++|+.|+++.+..        
T Consensus        89 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~Ls~n~l--------  145 (270)
T 2o6q_A           89 TLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKS--------------LPPRVFDSLTKLTYLSLGYNEL--------  145 (270)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSSCC--------
T ss_pred             EEECCCC-cCCcCCHhHcccccCCCEEECCCCccCe--------------eCHHHhCcCcCCCEEECCCCcC--------
Confidence            9999998 7888887657889999999999887754              2334456677777776663211        


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                                          .......+..+++|+.|++++|.+..++..        ....+++|+.|+|+++ .+..+
T Consensus       146 --------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~  196 (270)
T 2o6q_A          146 --------------------QSLPKGVFDKLTSLKELRLYNNQLKRVPEG--------AFDKLTELKTLKLDNN-QLKRV  196 (270)
T ss_dssp             --------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSS-CCSCC
T ss_pred             --------------------CccCHhHccCCcccceeEecCCcCcEeChh--------HhccCCCcCEEECCCC-cCCcC
Confidence                                111111245667778888877774443321        1135677888888775 45555


Q ss_pred             ch--hhccCCcceEeEeccc
Q 008415          440 TW--LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       440 ~~--l~~l~~L~~L~L~~~~  457 (566)
                      +.  +..+++|+.|++++++
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CHHHhccccCCCEEEecCCC
Confidence            43  6667888888887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=1.3e-16  Score=157.22  Aligned_cols=193  Identities=19%  Similarity=0.295  Sum_probs=140.7

Q ss_pred             ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      ...+.++++|++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .++.+|        .+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~--------~~~~  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--------AIAG  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG--------GGTT
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch--------hhcC
Confidence            33457888888888888888878888888888888888888776  788888888888888 787654        2678


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccch
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGV  354 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~  354 (566)
                      +++|++|++++| .++.+|.  +..+++|++|++++|.+..                +..++.+++|+.|+++.+..   
T Consensus       106 l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~l~~n~l---  163 (308)
T 1h6u_A          106 LQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITN----------------ISPLAGLTNLQYLSIGNAQV---  163 (308)
T ss_dssp             CTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC----------------CGGGGGCTTCCEEECCSSCC---
T ss_pred             CCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCc----------------CccccCCCCccEEEccCCcC---
Confidence            888888888888 7888876  8888888888888887654                11256666666666653211   


Q ss_pred             hccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415          355 QNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR  434 (566)
Q Consensus       355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  434 (566)
                                               ..  +..+..+++|+.|++++|.+..++          ....+++|+.|+++++ 
T Consensus       164 -------------------------~~--~~~l~~l~~L~~L~l~~n~l~~~~----------~l~~l~~L~~L~L~~N-  205 (308)
T 1h6u_A          164 -------------------------SD--LTPLANLSKLTTLKADDNKISDIS----------PLASLPNLIEVHLKNN-  205 (308)
T ss_dssp             -------------------------CC--CGGGTTCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECTTS-
T ss_pred             -------------------------CC--ChhhcCCCCCCEEECCCCccCcCh----------hhcCCCCCCEEEccCC-
Confidence                                     11  112556678888888887744332          1246778888888875 


Q ss_pred             CCCCCchhhccCCcceEeEecccC
Q 008415          435 KAKDLTWLVFVQNLKVLRIGDCYD  458 (566)
Q Consensus       435 ~l~~l~~l~~l~~L~~L~L~~~~~  458 (566)
                      .+..++.+..+++|+.|++++++.
T Consensus       206 ~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          206 QISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             ccCccccccCCCCCCEEEccCCee
Confidence            566666678888888888887753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=6.5e-16  Score=168.12  Aligned_cols=148  Identities=23%  Similarity=0.199  Sum_probs=125.3

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +.+.+.++..+|..- ...+++|++++|.++.++  .+..+++|++|++++|.+..+++..|+++++|++|+|++| .++
T Consensus        36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~  113 (635)
T 4g8a_A           36 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ  113 (635)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred             EECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC
Confidence            445556677777422 258999999999999987  4789999999999999999999887999999999999999 999


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK  339 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  339 (566)
                      .+|...      +++|++|++|++++| .++.+|...++++++|++|++++|.+...             ..+..++.++
T Consensus       114 ~l~~~~------f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-------------~~~~~~~~l~  173 (635)
T 4g8a_A          114 SLALGA------FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF-------------KLPEYFSNLT  173 (635)
T ss_dssp             EECGGG------GTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC-------------CCCGGGGGCT
T ss_pred             CCCHHH------hcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccC-------------CCchhhccch
Confidence            888654      799999999999999 89999986699999999999999987541             2456678899


Q ss_pred             CCceEEEEEcCc
Q 008415          340 HLNVLSWTFRSS  351 (566)
Q Consensus       340 ~L~~L~i~~~~~  351 (566)
                      +|+.|+++.+..
T Consensus       174 ~L~~L~L~~N~l  185 (635)
T 4g8a_A          174 NLEHLDLSSNKI  185 (635)
T ss_dssp             TCCEEECCSSCC
T ss_pred             hhhhhcccCccc
Confidence            999999986543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=1.6e-16  Score=150.65  Aligned_cols=98  Identities=19%  Similarity=0.298  Sum_probs=75.2

Q ss_pred             cCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC-CccccccccccCcchhccccCcEecccC-
Q 008415          208 GNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS-LRKLPSGIRGLPQELKALEKLRYLNLDY-  285 (566)
Q Consensus       208 ~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~-i~~lp~~i~~LP~~i~~L~~L~~L~L~~-  285 (566)
                      ..++..+|.  -.++|++|++++|.+..+|...|+.+++|++|++++| . ++.+|...      +.++++|++|++++ 
T Consensus        20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~------f~~l~~L~~L~l~~~   90 (239)
T 2xwt_C           20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHS------FYNLSKVTHIEIRNT   90 (239)
T ss_dssp             ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTT------EESCTTCCEEEEEEE
T ss_pred             ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhH------cCCCcCCcEEECCCC
Confidence            334666665  3458888888888888888766888888999999888 6 77766533      67888888888888 


Q ss_pred             cccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          286 TRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       286 ~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      | .++.+|.+.+..+++|++|++.+|.+..
T Consensus        91 n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           91 R-NLTYIDPDALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             T-TCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred             C-CeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence            5 7888886557888888888888876643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=4.3e-16  Score=151.19  Aligned_cols=216  Identities=18%  Similarity=0.147  Sum_probs=133.2

Q ss_pred             EecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc
Q 008415          183 VHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK  260 (566)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~  260 (566)
                      .+.+..+..+|..- ..++++|++.+|.+..++  .+..+++|++|++++|.+..++...+.++++|++|++++| .++.
T Consensus        13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~   90 (276)
T 2z62_A           13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQS   90 (276)
T ss_dssp             ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred             EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCc
Confidence            33444444455311 246777777777777665  3566777777777777777766655777777777777777 7765


Q ss_pred             ccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCC
Q 008415          261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKH  340 (566)
Q Consensus       261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  340 (566)
                      ++..      .+.++++|++|++++| .+..++...++.+++|++|++++|.+...             ..+..++++++
T Consensus        91 ~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~l~~~~~~l~~  150 (276)
T 2z62_A           91 LALG------AFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF-------------KLPEYFSNLTN  150 (276)
T ss_dssp             ECTT------TTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC-------------CCCGGGGGCTT
T ss_pred             cChh------hhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCcccee-------------cCchhhccCCC
Confidence            5532      2677777777777777 66666653377777777777777765430             12445566666


Q ss_pred             CceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcc----eEEEeccccceeeecccccccc
Q 008415          341 LNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQ----KFELESCNLEEMKIDSTEEVKK  416 (566)
Q Consensus       341 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~l~~l~~~~~~~~~~  416 (566)
                      |+.|+++.+..                            .......+..+++|+    +|++++|.+..++...      
T Consensus       151 L~~L~Ls~N~l----------------------------~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~------  196 (276)
T 2z62_A          151 LEHLDLSSNKI----------------------------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA------  196 (276)
T ss_dssp             CCEEECCSSCC----------------------------CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS------
T ss_pred             CCEEECCCCCC----------------------------CcCCHHHhhhhhhccccceeeecCCCcccccCccc------
Confidence            66666653211                            111111233344444    7788887755443221      


Q ss_pred             cCccCCCcccEEecccCcCCCCCch--hhccCCcceEeEecccC
Q 008415          417 LFQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDCYD  458 (566)
Q Consensus       417 ~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~  458 (566)
                         ....+|+.|+++++ .++.++.  +..+++|+.|++++++.
T Consensus       197 ---~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          197 ---FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             ---SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             ---cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence               12347888888886 4666554  57788888888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=1.8e-16  Score=153.54  Aligned_cols=111  Identities=25%  Similarity=0.400  Sum_probs=87.4

Q ss_pred             ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      ...+.+++.+.+.++.+..++.+..+++|++|++++|.+..++ . ++.+++|++|++++| .++.+|...      +++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n-~l~~~~~~~------~~~  107 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGN-QLQSLPNGV------FDK  107 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTS-CCCCCCTTT------TTT
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCC-ccCccChhH------hcC
Confidence            3445688888888888888877888888888888888877765 3 788888888888888 887766543      678


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      +++|++|++++| .++.+|...++.+++|++|++.+|.+..
T Consensus       108 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A          108 LTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCc
Confidence            888888888888 7888877657888888888888886644

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=8.8e-16  Score=154.33  Aligned_cols=239  Identities=12%  Similarity=0.089  Sum_probs=151.4

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC-ccccccccccCcchhccccCcE
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL-RKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i-~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      +.+..++++++.+|... .++++.|++++|+++.+|...|.++++|++|+|++| .+ +.+|...      +.+|++|++
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~------f~~L~~l~~   83 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADV------FSNLPKLHE   83 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTS------BCSCTTCCE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhH------hhcchhhhh
Confidence            45677778888887532 468899999999998888877888999999999998 65 4455443      678888776


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccC
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKY  360 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~  360 (566)
                      +.+.++.+++.+|.+++..+++|++|++.+|.+...              .........++..+.+.             
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~~~l~~l~l~-------------  136 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL--------------PDVHKIHSLQKVLLDIQ-------------  136 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC--------------CCCTTCCBSSCEEEEEE-------------
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccC--------------Cchhhcccchhhhhhhc-------------
Confidence            544443378888776688899999999988876541              11111222233334433             


Q ss_pred             CcccccceEEEEecccCCCCCeeeeccccc-cCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          361 PKLVSITQSVLVKSGVHTSPPFNVLHLAYM-ENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       361 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                                   . +.....+....+..+ ..++.|++++|.++.++...         ....+|++|.+.+++.++.+
T Consensus       137 -------------~-~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~---------f~~~~L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          137 -------------D-NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA---------FNGTQLDELNLSDNNNLEEL  193 (350)
T ss_dssp             -------------S-CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS---------STTEEEEEEECTTCTTCCCC
T ss_pred             -------------c-ccccccccccchhhcchhhhhhccccccccCCChhh---------ccccchhHHhhccCCcccCC
Confidence                         1 111111111122222 35667777777755543221         13456777777777777777


Q ss_pred             ch--hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeec
Q 008415          440 TW--LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVC  515 (566)
Q Consensus       440 ~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~  515 (566)
                      |.  +..+++|++|+++++. ++.++               ...|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus       194 ~~~~f~~l~~L~~LdLs~N~-l~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          194 PNDVFHGASGPVILDISRTR-IHSLP---------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             CTTTTTTEECCSEEECTTSC-CCCCC---------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             CHHHhccCcccchhhcCCCC-cCccC---------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            65  5677788888887763 44333               23466777777777777777763 4557777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=8.9e-16  Score=148.40  Aligned_cols=195  Identities=19%  Similarity=0.230  Sum_probs=149.4

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+...+..+..+|..- ...+++|++.+|.+..++  .+..+++|++|++++|.+..+|...|..+++|++|++++| .+
T Consensus        20 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l   97 (270)
T 2o6q_A           20 SVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KL   97 (270)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CC
T ss_pred             EEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cC
Confidence            4556666667666422 368999999999999887  4788999999999999999999887899999999999999 99


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.+|...      +.++++|++|++++| .++.+|...++.+++|++|++++|.+..              .....++.+
T Consensus        98 ~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~l  156 (270)
T 2o6q_A           98 QALPIGV------FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQS--------------LPKGVFDKL  156 (270)
T ss_dssp             CCCCTTT------TTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred             CcCCHhH------cccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCc--------------cCHhHccCC
Confidence            8887654      789999999999999 8999988768999999999999998765              233346777


Q ss_pred             CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415          339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF  418 (566)
Q Consensus       339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~  418 (566)
                      ++|+.|+++.+..                            .......+..+++|+.|++++|.+..++..        .
T Consensus       157 ~~L~~L~L~~n~l----------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~  200 (270)
T 2o6q_A          157 TSLKELRLYNNQL----------------------------KRVPEGAFDKLTELKTLKLDNNQLKRVPEG--------A  200 (270)
T ss_dssp             TTCCEEECCSSCC----------------------------SCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------T
T ss_pred             cccceeEecCCcC----------------------------cEeChhHhccCCCcCEEECCCCcCCcCCHH--------H
Confidence            8888777763321                            111111355677888888888875544321        1


Q ss_pred             ccCCCcccEEecccCc
Q 008415          419 QSGFRSLNTVSVHYCR  434 (566)
Q Consensus       419 ~~~l~~L~~L~L~~c~  434 (566)
                      ...+++|+.|+|++++
T Consensus       201 ~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hccccCCCEEEecCCC
Confidence            2357888888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=3.5e-17  Score=161.87  Aligned_cols=85  Identities=19%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             CCCccEEEecCCccc-ccchHHH-hcCccCCEEecCCCCCCccccccccccCcchhcc-----ccCcEecccCcccCCcc
Q 008415          220 CPRLVTLLLGGNRIE-EITDGFF-QSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL-----EKLRYLNLDYTRFLSII  292 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~-~lp~~~~-~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L-----~~L~~L~L~~~~~l~~l  292 (566)
                      +++|++|++++|.+. .+|..++ +.+++|++|+|++| .++.+|..       ++.+     ++|++|++++| .++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~l~~~~~~~L~~L~L~~N-~l~~~  164 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAW-------LAELQQWLKPGLKVLSIAQA-HSLNF  164 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSH-------HHHHHTTCCTTCCEEEEESC-SCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHH-------HHHHHHhhcCCCcEEEeeCC-CCccc
Confidence            555556666555554 3444321 55555666666555 55443322       2433     55566666555 45555


Q ss_pred             chhhhcCCCCCcEEEecCCCC
Q 008415          293 PHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       293 P~~~i~~L~~L~~L~l~~~~~  313 (566)
                      |...++++++|++|++++|..
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTT
T ss_pred             hHHHhccCCCCCEEECCCCCc
Confidence            533355555666666655544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=3.5e-16  Score=148.33  Aligned_cols=205  Identities=15%  Similarity=0.207  Sum_probs=145.5

Q ss_pred             cccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCc-ccccchHHHhcCccCCEEecCC-CCCCcccccc
Q 008415          189 LTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNR-IEEITDGFFQSMSTLRVLSLRI-NISLRKLPSG  264 (566)
Q Consensus       189 ~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~-l~~lp~~~~~~l~~Lr~L~L~~-~~~i~~lp~~  264 (566)
                      +..+|.  -..++++|++.+|.+..++.  +..+++|++|++++|. +..++...|.++++|++|++++ | .++.+|..
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence            566666  34589999999999999875  6789999999999996 9999886689999999999998 8 89887754


Q ss_pred             ccccCcchhccccCcEecccCcccCCccchhhhcCCCCCc---EEEecCC-CCcccccccccccccCccchHhhhcCCCC
Q 008415          265 IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLE---VLRLFGC-GFWVVTEEEGNVLCEDAEPLMKELLGSKH  340 (566)
Q Consensus       265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  340 (566)
                      .      +.++++|++|++++| .++.+|.  ++.+++|+   +|++++| .+..              .....+..+++
T Consensus       100 ~------f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~--------------i~~~~~~~l~~  156 (239)
T 2xwt_C          100 A------LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTS--------------IPVNAFQGLCN  156 (239)
T ss_dssp             S------EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCE--------------ECTTTTTTTBS
T ss_pred             H------hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchhh--------------cCcccccchhc
Confidence            3      789999999999999 7999997  88899998   9999998 6543              22334667777


Q ss_pred             Cc-eEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccC
Q 008415          341 LN-VLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLF  418 (566)
Q Consensus       341 L~-~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~  418 (566)
                      |+ .|+++.+....++.                            ..+.. ++|+.|++++|. +..++.+.        
T Consensus       157 L~~~L~l~~n~l~~i~~----------------------------~~~~~-~~L~~L~L~~n~~l~~i~~~~--------  199 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQG----------------------------YAFNG-TKLDAVYLNKNKYLTVIDKDA--------  199 (239)
T ss_dssp             SEEEEECCSCCCCEECT----------------------------TTTTT-CEEEEEECTTCTTCCEECTTT--------
T ss_pred             ceeEEEcCCCCCcccCH----------------------------hhcCC-CCCCEEEcCCCCCcccCCHHH--------
Confidence            77 77776432211110                            11222 466666666664 55443221        


Q ss_pred             ccCC-CcccEEecccCcCCCCCchhhccCCcceEeEecccC
Q 008415          419 QSGF-RSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYD  458 (566)
Q Consensus       419 ~~~l-~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~  458 (566)
                      ...+ ++|+.|+++++ .++.+|.- .+++|+.|++.++..
T Consensus       200 ~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred             hhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence            1234 66777777663 45555443 566777777766543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=7.3e-16  Score=161.77  Aligned_cols=237  Identities=16%  Similarity=0.097  Sum_probs=160.6

Q ss_pred             CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415          218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI  297 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i  297 (566)
                      ..+++|++|++++|.+..+++..|+.+++|++|+|++| .++.+++        ++.+++|++|++++| .++.+|.   
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l~~---   97 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--------LESLSTLRTLDLNNN-YVQELLV---   97 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--------CTTCTTCCEEECCSS-EEEEEEE---
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--------cccCCCCCEEEecCC-cCCCCCC---
Confidence            45669999999999999887666999999999999999 8876543        689999999999999 7888775   


Q ss_pred             cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415          298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH  377 (566)
Q Consensus       298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  377 (566)
                        .++|++|++++|.+...              ..   ..+++|+.|+++.+.......  .....+++|+.|++++ + 
T Consensus        98 --~~~L~~L~L~~N~l~~~--------------~~---~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~-N-  154 (487)
T 3oja_A           98 --GPSIETLHAANNNISRV--------------SC---SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKL-N-  154 (487)
T ss_dssp             --CTTCCEEECCSSCCCCE--------------EE---CCCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTT-S-
T ss_pred             --CCCcCEEECcCCcCCCC--------------Cc---cccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCC-C-
Confidence              38999999999987651              11   245778888888654433211  1223346788888876 2 


Q ss_pred             CCCCeeeeccc-cccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC-chhhccCCcceEeEec
Q 008415          378 TSPPFNVLHLA-YMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL-TWLVFVQNLKVLRIGD  455 (566)
Q Consensus       378 ~~~~~~~~~l~-~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~  455 (566)
                      .........+. .+++|+.|++++|.+..++          +...+++|+.|+|+++ .+..+ +.++.+++|+.|++++
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN  223 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTT
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCcccccc----------ccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecC
Confidence            22222222343 5678888888887754432          1124678888888775 44444 4477788888888877


Q ss_pred             ccCcccccccccccccccccCCCCccccccceeeccccccc-cccCCCCCCCCCccEEeec
Q 008415          456 CYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL-KSVYPNPLPFPKLKKIDVC  515 (566)
Q Consensus       456 ~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L-~~l~~~~~~~p~L~~L~i~  515 (566)
                      |... .+             |..+..+++|+.|++.+++-. ..++.....++.|+.+.+.
T Consensus       224 N~l~-~l-------------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          224 NKLV-LI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SCCC-EE-------------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCc-cc-------------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            6432 22             235666778888888775532 1222223456667666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=1.1e-15  Score=149.17  Aligned_cols=199  Identities=18%  Similarity=0.070  Sum_probs=143.2

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .+.+++.+.+.++.+..+|... .+++++|++++|.+..++...|..+++|++|+|++| .++.+|.        .+.++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~l~   77 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--------DGTLP   77 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--------CSCCT
T ss_pred             ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--------CCCCC
Confidence            3467888999998888887533 378999999999988887666899999999999999 8887664        26888


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQN  356 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~  356 (566)
                      +|++|++++| .++.+|.. +..+++|++|++++|.+..              .....+..+++|+.|+++.+...    
T Consensus        78 ~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~--------------l~~~~~~~l~~L~~L~L~~N~l~----  137 (290)
T 1p9a_G           78 VLGTLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS--------------LPLGALRGLGELQELYLKGNELK----  137 (290)
T ss_dssp             TCCEEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC--------------CCSSTTTTCTTCCEEECTTSCCC----
T ss_pred             cCCEEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcc--------------cCHHHHcCCCCCCEEECCCCCCC----
Confidence            9999999999 89999986 8899999999999988765              23345667777777776632211    


Q ss_pred             cccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCC
Q 008415          357 FLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKA  436 (566)
Q Consensus       357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l  436 (566)
                                              ......+..+++|+.|++++|.+..++.+.        ...+++|+.|+|+++ .+
T Consensus       138 ------------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--------~~~l~~L~~L~L~~N-~l  184 (290)
T 1p9a_G          138 ------------------------TLPPGLLTPTPKLEKLSLANNNLTELPAGL--------LNGLENLDTLLLQEN-SL  184 (290)
T ss_dssp             ------------------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTT--------TTTCTTCCEEECCSS-CC
T ss_pred             ------------------------ccChhhcccccCCCEEECCCCcCCccCHHH--------hcCcCCCCEEECCCC-cC
Confidence                                    111112455677777877777755443221        134677888888774 45


Q ss_pred             CCCch-hhccCCcceEeEecccC
Q 008415          437 KDLTW-LVFVQNLKVLRIGDCYD  458 (566)
Q Consensus       437 ~~l~~-l~~l~~L~~L~L~~~~~  458 (566)
                      ..+|. +...++|+.|.+.+++.
T Consensus       185 ~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          185 YTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccChhhcccccCCeEEeCCCCc
Confidence            56554 66667788888876653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=1.4e-15  Score=147.62  Aligned_cols=121  Identities=19%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             EEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecc
Q 008415          204 VSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNL  283 (566)
Q Consensus       204 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L  283 (566)
                      +...+..+..+|... .++|++|++++|.+..++...+.++++|++|++++| .++.+|..      .++++++|++|++
T Consensus        12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~L   83 (276)
T 2z62_A           12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG------AYQSLSHLSTLIL   83 (276)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTT------TTTTCTTCCEEEC
T ss_pred             EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHH------HccCCcCCCEEEC
Confidence            344445566666422 367999999999998888755889999999999999 88876653      3788999999999


Q ss_pred             cCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          284 DYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       284 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      ++| .++.++.+.+.++++|++|++.+|....              .....++.+++|+.|+++
T Consensus        84 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           84 TGN-PIQSLALGAFSGLSSLQKLVAVETNLAS--------------LENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TTC-CCCEECTTTTTTCTTCCEEECTTSCCCC--------------STTCCCTTCTTCCEEECC
T ss_pred             CCC-ccCccChhhhcCCccccEEECCCCCccc--------------cCchhcccCCCCCEEECc
Confidence            999 7888876558999999999999887754              122235566666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=8.4e-16  Score=148.72  Aligned_cols=144  Identities=22%  Similarity=0.361  Sum_probs=120.7

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL  261 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l  261 (566)
                      +...+..+..++....+.++++|++.+|.+..++.+..+++|++|++++|.+..++...++++++|++|++++| .++.+
T Consensus        46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  124 (272)
T 3rfs_A           46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL  124 (272)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCC
T ss_pred             eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCcc
Confidence            44555566667777788999999999999999888899999999999999999998887899999999999999 99887


Q ss_pred             cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415          262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL  341 (566)
Q Consensus       262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  341 (566)
                      |...      ++++++|++|++++| .++.+|...++.+++|++|++++|.+..              .....++.+++|
T Consensus       125 ~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L  183 (272)
T 3rfs_A          125 PDGV------FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS--------------LPEGVFDKLTQL  183 (272)
T ss_dssp             CTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTCTTC
T ss_pred             CHHH------hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc--------------cCHHHhcCCccC
Confidence            7654      789999999999999 8999998767899999999999997754              223335566666


Q ss_pred             ceEEEE
Q 008415          342 NVLSWT  347 (566)
Q Consensus       342 ~~L~i~  347 (566)
                      +.|+++
T Consensus       184 ~~L~L~  189 (272)
T 3rfs_A          184 KDLRLY  189 (272)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            666665

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.64  E-value=1e-16  Score=170.64  Aligned_cols=146  Identities=8%  Similarity=-0.009  Sum_probs=105.1

Q ss_pred             ecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHH
Q 008415            7 TFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKL   81 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l   81 (566)
                      +.+...-.+++|++|.++|+....           .+++++++++|+++|   |+|+  +|+.++.+    .|+.+ +.+
T Consensus       288 ~~l~~L~~~ea~~Lf~~~a~~~~~-----------~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l  351 (549)
T 2a5y_B          288 IEVTSLEIDECYDFLEAYGMPMPV-----------GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQL  351 (549)
T ss_dssp             EECCCCCHHHHHHHHHHTSCCCC-------------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHH
T ss_pred             EECCCCCHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHh
Confidence            334443458999999999875321           135577888999999   8884  45655433    36554 556


Q ss_pred             HHhhH-----------HHhhhchHHHHHHHhcc-----------cccCccccCCC-CChHHHHHHHHhc--CCCcccc-c
Q 008415           82 ETEYT-----------ELERDRAQEMDRLCLGG-----------LCSKNFVSNSE-IPKRQLIDYWISE--GFVCDFD-D  135 (566)
Q Consensus        82 ~~~~~-----------~~~~~~L~~~lK~Cf~l-----------yc~~~~~~Fp~-i~~~~Li~~wiae--gfi~~~~-~  135 (566)
                      .+.++           .++|++||.++|.|| +           ||    |+||+ ...+  ++.|+|+  ||+.... +
T Consensus       352 ~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f-~~Ls~~er~l~~~l----s~fp~~~~i~--i~~w~a~~~G~i~~~~~~  424 (549)
T 2a5y_B          352 NNKLESRGLVGVECITPYSYKSLAMALQRCV-EVLSDEDRSALAFA----VVMPPGVDIP--VKLWSCVIPVDICSNEEE  424 (549)
T ss_dssp             HHHHHHHCSSTTCCCSSSSSSSHHHHHHHHH-HTSCHHHHHHTTGG----GSSCTTCCEE--HHHHHHHSCC-------C
T ss_pred             HHHhhcccHHHHHHHHhcccccccHHHHHHH-hccchhhhhHhhhe----eeeCCCCeee--eeeeeeeccceeccCCCC
Confidence            66544           356778999999999 9           99    99999 4444  8999999  9998765 1


Q ss_pred             -----HhHHHHHHHHccccccc---CCcceecchhHHHHHHHHhcccC
Q 008415          136 -----GCDFIDDLLQACLLEEE---GDDHVKMHDMIREMSLWIACTVD  175 (566)
Q Consensus       136 -----~~~~~~~L~~r~ll~~~---~~~~~~mHdli~dl~~~i~~~e~  175 (566)
                           +.+||++|++|||++..   ...+|+|||+|||+|++++++++
T Consensus       425 ~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          425 QLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             CCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             CCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence                 34499999999999986   34579999999999999998765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1.2e-15  Score=160.08  Aligned_cols=239  Identities=16%  Similarity=0.093  Sum_probs=180.3

Q ss_pred             cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ..++++|++++|.+..++  .+..+++|++|++++|.+...++  ++.+++|++|+|++| .++.+|.           .
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~-----------~   98 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV-----------G   98 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE-----------C
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC-----------C
Confidence            358999999999998875  47899999999999999887665  889999999999999 8876552           3


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ  355 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~  355 (566)
                      ++|++|++++| .+..+|..   .+++|++|++++|.+..              ..+..++.+++|+.|+++.+......
T Consensus        99 ~~L~~L~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           99 PSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             TTCCEEECCSS-CCCCEEEC---CCSSCEEEECCSSCCCS--------------GGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcCEEECcCC-cCCCCCcc---ccCCCCEEECCCCCCCC--------------CCchhhcCCCCCCEEECCCCCCCCcC
Confidence            79999999999 78888763   57899999999998865              34556778889999999866443311


Q ss_pred             ccccCC-cccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415          356 NFLKYP-KLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR  434 (566)
Q Consensus       356 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  434 (566)
                        +... ..+++|+.|++++ +. .  ...+....+++|+.|++++|.+..++..         ...+++|+.|+|+++ 
T Consensus       161 --~~~l~~~l~~L~~L~Ls~-N~-l--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~~l~~L~~L~Ls~N-  224 (487)
T 3oja_A          161 --FAELAASSDTLEHLNLQY-NF-I--YDVKGQVVFAKLKTLDLSSNKLAFMGPE---------FQSAAGVTWISLRNN-  224 (487)
T ss_dssp             --GGGGGGGTTTCCEEECTT-SC-C--CEEECCCCCTTCCEEECCSSCCCEECGG---------GGGGTTCSEEECTTS-
T ss_pred             --hHHHhhhCCcccEEecCC-Cc-c--ccccccccCCCCCEEECCCCCCCCCCHh---------HcCCCCccEEEecCC-
Confidence              1111 1347899999997 42 2  2234455689999999999996655422         246799999999996 


Q ss_pred             CCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccc
Q 008415          435 KAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL  496 (566)
Q Consensus       435 ~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L  496 (566)
                      .+..+|. ++.+++|+.|++++|+.....            +|..+..+++|+.|.+..+..+
T Consensus       225 ~l~~lp~~l~~l~~L~~L~l~~N~l~c~~------------~~~~~~~l~~L~~l~~~~~~~~  275 (487)
T 3oja_A          225 KLVLIEKALRFSQNLEHFDLRGNGFHCGT------------LRDFFSKNQRVQTVAKQTVKKL  275 (487)
T ss_dssp             CCCEECTTCCCCTTCCEEECTTCCBCHHH------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCcccchhhccCCCCCEEEcCCCCCcCcc------------hHHHHHhCCCCcEEeccccccc
Confidence            5556654 788999999999998765221            1124567888888888655443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=2.6e-15  Score=150.94  Aligned_cols=239  Identities=12%  Similarity=0.055  Sum_probs=176.0

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcc-cccchHHHhcCccCCE-EecCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRI-EEITDGFFQSMSTLRV-LSLRINI  256 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l-~~lp~~~~~~l~~Lr~-L~L~~~~  256 (566)
                      .+.+.+.+++++|..- ..++++|.+++|.++.++.  +..+++|++|++++|.+ ..+|...|.++++|+. +.+++| 
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence            4556666777777522 3689999999999999984  68899999999999987 4577777889988775 566677 


Q ss_pred             CCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhc
Q 008415          257 SLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELL  336 (566)
Q Consensus       257 ~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (566)
                      .++.+|...      +..+++|++|++++| .++.+|...+....++..|++.++.....             .....+.
T Consensus        91 ~l~~l~~~~------f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-------------l~~~~f~  150 (350)
T 4ay9_X           91 NLLYINPEA------FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT-------------IERNSFV  150 (350)
T ss_dssp             TCCEECTTS------BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE-------------ECTTSST
T ss_pred             cccccCchh------hhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc-------------ccccchh
Confidence            898887544      799999999999999 89999875466677888898876543320             1122334


Q ss_pred             CC-CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccccc
Q 008415          337 GS-KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVK  415 (566)
Q Consensus       337 ~L-~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~  415 (566)
                      .+ ..++.|+++.+....+   ........+++.|.+.+ +.....+....+..+++|+.|++++|.++.+|.       
T Consensus       151 ~~~~~l~~L~L~~N~i~~i---~~~~f~~~~L~~l~l~~-~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-------  219 (350)
T 4ay9_X          151 GLSFESVILWLNKNGIQEI---HNSAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISRTRIHSLPS-------  219 (350)
T ss_dssp             TSBSSCEEEECCSSCCCEE---CTTSSTTEEEEEEECTT-CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-------
T ss_pred             hcchhhhhhccccccccCC---ChhhccccchhHHhhcc-CCcccCCCHHHhccCcccchhhcCCCCcCccCh-------
Confidence            44 3577788776544333   22222235678888876 444444444457888999999999988665432       


Q ss_pred             ccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecc
Q 008415          416 KLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDC  456 (566)
Q Consensus       416 ~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~  456 (566)
                          ..|.+|++|.+.++..++.+|.+..+++|+.+++.+.
T Consensus       220 ----~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          220 ----YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             ----SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             ----hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence                3578999999999999999999999999999998643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.60  E-value=1.7e-14  Score=142.21  Aligned_cols=183  Identities=19%  Similarity=0.238  Sum_probs=138.6

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL  261 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l  261 (566)
                      +...+..+..++....+.++++|++++|.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .++.+
T Consensus        46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~  122 (308)
T 1h6u_A           46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QITDV  122 (308)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-CCCCC
T ss_pred             EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-CCCCc
Confidence            455555666677777789999999999999998889999999999999999988863  899999999999999 89876


Q ss_pred             cccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC
Q 008415          262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL  341 (566)
Q Consensus       262 p~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  341 (566)
                      |.        ++.+++|++|++++| .++.+|.  ++.+++|++|++++|.+..                +..+..+++|
T Consensus       123 ~~--------l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L  175 (308)
T 1h6u_A          123 TP--------LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD----------------LTPLANLSKL  175 (308)
T ss_dssp             GG--------GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGGGTTCTTC
T ss_pred             hh--------hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC----------------ChhhcCCCCC
Confidence            53        689999999999999 8999988  9999999999999998754                1227888899


Q ss_pred             ceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc
Q 008415          342 NVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN  402 (566)
Q Consensus       342 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  402 (566)
                      +.|+++.+....+..    ...+.+|+.|++++ +. ..  ....+..+++|+.|++++|.
T Consensus       176 ~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~-N~-l~--~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          176 TTLKADDNKISDISP----LASLPNLIEVHLKN-NQ-IS--DVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CEEECCSSCCCCCGG----GGGCTTCCEEECTT-SC-CC--BCGGGTTCTTCCEEEEEEEE
T ss_pred             CEEECCCCccCcChh----hcCCCCCCEEEccC-Cc-cC--ccccccCCCCCCEEEccCCe
Confidence            988888654333222    12234555555554 21 11  11234555555666655555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=1.1e-14  Score=142.05  Aligned_cols=198  Identities=17%  Similarity=0.097  Sum_probs=141.7

Q ss_pred             CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415          217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL  296 (566)
Q Consensus       217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~  296 (566)
                      ...+++++++++.++.+..+|..+   .+.|++|+|++| .++.++..      .+.++++|++|++++| .++.+|.  
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~--   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLA------TLMPYTRLTQLNLDRA-ELTKLQV--   72 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGG------GGTTCTTCCEEECTTS-CCCEEEC--
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHH------HhhcCCCCCEEECCCC-ccCcccC--
Confidence            356778899999998888888763   368899999999 88766543      3788899999999998 7888887  


Q ss_pred             hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEeccc
Q 008415          297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGV  376 (566)
Q Consensus       297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  376 (566)
                      .+.+++|++|++++|.+..               .+..+..+++|+.|+++.+.                          
T Consensus        73 ~~~l~~L~~L~Ls~N~l~~---------------l~~~~~~l~~L~~L~l~~N~--------------------------  111 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHNQLQS---------------LPLLGQTLPALTVLDVSFNR--------------------------  111 (290)
T ss_dssp             CSCCTTCCEEECCSSCCSS---------------CCCCTTTCTTCCEEECCSSC--------------------------
T ss_pred             CCCCCcCCEEECCCCcCCc---------------CchhhccCCCCCEEECCCCc--------------------------
Confidence            5788999999998887654               23345566666666665321                          


Q ss_pred             CCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch--hhccCCcceEeEe
Q 008415          377 HTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIG  454 (566)
Q Consensus       377 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~  454 (566)
                        ........+..+++|+.|++++|.+..++...        ...+++|+.|+|+++ .++.++.  +..+++|++|+++
T Consensus       112 --l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          112 --LTSLPLGALRGLGELQELYLKGNELKTLPPGL--------LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             --CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             --CcccCHHHHcCCCCCCEEECCCCCCCccChhh--------cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECC
Confidence              11111224667889999999998855543221        135789999999885 5777765  5778999999998


Q ss_pred             cccCcccccccccccccccccCCCCccccccceeecccc
Q 008415          455 DCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       455 ~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                      ++.. +.+             |..+...++|+.|.|.+.
T Consensus       181 ~N~l-~~i-------------p~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          181 ENSL-YTI-------------PKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             SSCC-CCC-------------CTTTTTTCCCSEEECCSC
T ss_pred             CCcC-Ccc-------------ChhhcccccCCeEEeCCC
Confidence            8753 333             335566778888888753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=6.2e-16  Score=154.53  Aligned_cols=246  Identities=16%  Similarity=0.173  Sum_probs=127.7

Q ss_pred             ccEEEeecCCcccccCCCCC--CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          201 AKRVSLMGNGIRSLSEIPTC--PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       201 lr~Lsl~~~~~~~l~~~~~~--~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      .+++++.++.+.. .....+  ++++.|++.++.+...+.. +..+++|++|++++| .+..     ..+|..+.++++|
T Consensus        49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~-----~~~~~~~~~~~~L  120 (336)
T 2ast_B           49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEV-----STLHGILSQCSKL  120 (336)
T ss_dssp             SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECH-----HHHHHHHTTBCCC
T ss_pred             heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCH-----HHHHHHHhhCCCC
Confidence            4556665554431 111222  5566666666655544444 445666666666666 4432     1133334566666


Q ss_pred             cEecccCcccCC-ccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcc
Q 008415          279 RYLNLDYTRFLS-IIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNF  357 (566)
Q Consensus       279 ~~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~  357 (566)
                      ++|++++| .++ ..|.. ++++++|++|++.+|....            .......++++++|+.|+++          
T Consensus       121 ~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~------------~~~l~~~~~~~~~L~~L~l~----------  176 (336)
T 2ast_B          121 QNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFS------------EFALQTLLSSCSRLDELNLS----------  176 (336)
T ss_dssp             SEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCC------------HHHHHHHHHHCTTCCEEECC----------
T ss_pred             CEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCCC------------HHHHHHHHhcCCCCCEEcCC----------
Confidence            66666666 444 23443 5666666666666662211            11122334455555555554          


Q ss_pred             ccCCcccccceEEEEecccCCCCCeeee-cccccc-CcceEEEeccc--c--ceeeecccccccccCccCCCcccEEecc
Q 008415          358 LKYPKLVSITQSVLVKSGVHTSPPFNVL-HLAYME-NLQKFELESCN--L--EEMKIDSTEEVKKLFQSGFRSLNTVSVH  431 (566)
Q Consensus       358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~-~L~~L~l~~~~--l--~~l~~~~~~~~~~~~~~~l~~L~~L~L~  431 (566)
                                      + |.......+. .+..++ +|++|++++|.  +  ..++         .....+++|+.|+++
T Consensus       177 ----------------~-~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---------~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          177 ----------------W-CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---------TLVRRCPNLVHLDLS  230 (336)
T ss_dssp             ----------------C-CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---------HHHHHCTTCSEEECT
T ss_pred             ----------------C-CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---------HHHhhCCCCCEEeCC
Confidence                            3 2111111111 245566 78888887773  2  1111         011356788888888


Q ss_pred             cCcCCCC--CchhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCC-CCCC-C
Q 008415          432 YCRKAKD--LTWLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPN-PLPF-P  507 (566)
Q Consensus       432 ~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~-~~~~-p  507 (566)
                      +|..+.+  ++.++.+++|++|++++|..+....-            ..+..+++|+.|++.+|     ++.. ...+ .
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~  293 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI-----VPDGTLQLLKE  293 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS-----SCTTCHHHHHH
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc-----cCHHHHHHHHh
Confidence            8764443  44577788888888888863322110            13456788888888877     2221 1111 2


Q ss_pred             CccEEeecCCCCCCC
Q 008415          508 KLKKIDVCHCPQLKK  522 (566)
Q Consensus       508 ~L~~L~i~~C~~L~~  522 (566)
                      +|+.|++ +|++++.
T Consensus       294 ~l~~L~l-~~n~l~~  307 (336)
T 2ast_B          294 ALPHLQI-NCSHFTT  307 (336)
T ss_dssp             HSTTSEE-SCCCSCC
T ss_pred             hCcceEE-ecccCcc
Confidence            3445555 4566776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.58  E-value=2.2e-16  Score=156.07  Aligned_cols=106  Identities=14%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             ccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCC-C--chhhccCCcceEeEecccCcccccc
Q 008415          388 AYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-L--TWLVFVQNLKVLRIGDCYDMEEIIS  464 (566)
Q Consensus       388 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l--~~l~~l~~L~~L~L~~~~~l~~i~~  464 (566)
                      ..+++|++|++++|.+..++.-.    . .....+++|+.|+++++. +.. .  +.+..+++|++|++++|.. +.++ 
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~----~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip-  269 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVC----S-ALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGL-KQVP-  269 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHH----H-HHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCC-SSCC-
T ss_pred             ccCCCCCEEECCCCcCcchHHHH----H-HHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCcc-Chhh-
Confidence            56678888888877744221000    0 001245788888888753 443 2  2355578888888887753 3332 


Q ss_pred             cccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCC
Q 008415          465 VDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHC  517 (566)
Q Consensus       465 ~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C  517 (566)
                                  ..+.  ++|+.|++++. .++.++. ...+++|++|++.+.
T Consensus       270 ------------~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          270 ------------KGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             ------------SSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             ------------hhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence                        2332  78888888875 5777765 667888888888874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=2.2e-14  Score=136.95  Aligned_cols=107  Identities=24%  Similarity=0.347  Sum_probs=82.1

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..+++++.++.+..+|... .++|+.|++++|.+..++...++++++|++|+|++| .++.++...      +.++++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~   86 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV------FDDLTELG   86 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT------TTTCTTCC
T ss_pred             CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhH------hccCCcCC
Confidence            4567777777777777532 268888888888888777666788888888888888 887665433      67888888


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      +|++++| .++.+|...+..+++|++|++++|.+..
T Consensus        87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  121 (251)
T 3m19_A           87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKS  121 (251)
T ss_dssp             EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCC
Confidence            8888888 7888886657888888888888876654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=1.3e-14  Score=141.59  Aligned_cols=169  Identities=20%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415          218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI  297 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i  297 (566)
                      ..+++|+.|++++|.+..++.  +..+++|++|++++| .++.+|.        ++++++|++|++++| .++.+|.  +
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--------l~~l~~L~~L~l~~n-~l~~~~~--l  108 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--------LANLKNLGWLFLDEN-KVKDLSS--L  108 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--------GTTCTTCCEEECCSS-CCCCGGG--G
T ss_pred             hhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc--------cccCCCCCEEECCCC-cCCCChh--h
Confidence            344455555555555544432  445555555555555 5544332        345555555555555 4555444  5


Q ss_pred             cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccC
Q 008415          298 SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVH  377 (566)
Q Consensus       298 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  377 (566)
                      +.+++|++|++++|.+..                +..+..+++|+.|+++.+..                          
T Consensus       109 ~~l~~L~~L~L~~n~i~~----------------~~~l~~l~~L~~L~l~~n~l--------------------------  146 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKI--------------------------  146 (291)
T ss_dssp             TTCTTCCEEECTTSCCCC----------------CGGGGGCTTCCEEECCSSCC--------------------------
T ss_pred             ccCCCCCEEECCCCcCCC----------------ChhhcCCCCCCEEEccCCcC--------------------------
Confidence            555555555555554432                12333444444444432110                          


Q ss_pred             CCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEeccc
Q 008415          378 TSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCY  457 (566)
Q Consensus       378 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~  457 (566)
                        ..  +..+..+++|+.|++++|.+..++          +...+++|+.|+++++ .+.+++.+..+++|+.|++++++
T Consensus       147 --~~--~~~l~~l~~L~~L~L~~N~l~~~~----------~l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          147 --TD--ITVLSRLTKLDTLSLEDNQISDIV----------PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             --CC--CGGGGGCTTCSEEECCSSCCCCCG----------GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             --Cc--chhhccCCCCCEEEccCCccccch----------hhcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence              00  012344556666666665533221          1235666777777664 45566666777777777777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=1.7e-14  Score=140.85  Aligned_cols=171  Identities=25%  Similarity=0.268  Sum_probs=128.5

Q ss_pred             CccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          194 KFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       194 ~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      ....+.+++.+++.++.+..++.+..+++|++|++++|.+..++.  +.++++|++|++++| .++.+|.        ++
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--------l~  109 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS--------LK  109 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG--------GT
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh--------hc
Confidence            344567899999999999999888999999999999999998876  899999999999999 8877553        68


Q ss_pred             ccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccc
Q 008415          274 ALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG  353 (566)
Q Consensus       274 ~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~  353 (566)
                      ++++|++|++++| .++.++.  +..+++|++|++++|.+..                +..++.+++|+.|+++.+....
T Consensus       110 ~l~~L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          110 DLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------ITVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             TCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGGGGGCTTCSEEECCSSCCCC
T ss_pred             cCCCCCEEECCCC-cCCCChh--hcCCCCCCEEEccCCcCCc----------------chhhccCCCCCEEEccCCcccc
Confidence            9999999999999 8999875  9999999999999998754                2567788888888887554333


Q ss_pred             hhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc
Q 008415          354 VQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN  402 (566)
Q Consensus       354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  402 (566)
                      ...    ...+++|+.|++++ +. ...  +..+..+++|+.|++++|.
T Consensus       171 ~~~----l~~l~~L~~L~L~~-N~-i~~--l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          171 IVP----LAGLTKLQNLYLSK-NH-ISD--LRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CGG----GTTCTTCCEEECCS-SC-CCB--CGGGTTCTTCSEEEEEEEE
T ss_pred             chh----hcCCCccCEEECCC-Cc-CCC--ChhhccCCCCCEEECcCCc
Confidence            222    22234555555554 21 111  2234455555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=4.3e-14  Score=134.90  Aligned_cols=145  Identities=24%  Similarity=0.302  Sum_probs=118.7

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+...+..+..+|..- ...++.|.+.+|.+..++  .+..+++|++|++++|.+..++...+..+++|++|++++| .+
T Consensus        18 ~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l   95 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QL   95 (251)
T ss_dssp             EEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred             EEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence            3556666677776432 268999999999998876  3688999999999999999888877899999999999999 99


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.+|...      ++.+++|++|++++| .++.+|.+.+..+++|++|++++|.+..              .....++.+
T Consensus        96 ~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l  154 (251)
T 3m19_A           96 ASLPLGV------FDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS--------------IPAGAFDKL  154 (251)
T ss_dssp             CCCCTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred             cccChhH------hcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc--------------cCHHHcCcC
Confidence            8887654      789999999999999 8999998767899999999999997754              223346666


Q ss_pred             CCCceEEEEE
Q 008415          339 KHLNVLSWTF  348 (566)
Q Consensus       339 ~~L~~L~i~~  348 (566)
                      ++|+.|+++.
T Consensus       155 ~~L~~L~L~~  164 (251)
T 3m19_A          155 TNLQTLSLST  164 (251)
T ss_dssp             TTCCEEECCS
T ss_pred             cCCCEEECCC
Confidence            7677666663

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.55  E-value=3.3e-15  Score=147.46  Aligned_cols=110  Identities=16%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             cccEEEeecCCccc-----ccCCCCCCCccEEEecCCcccc-cchHHH--hcCccCCEEecCCCCCCccccccccccCcc
Q 008415          200 GAKRVSLMGNGIRS-----LSEIPTCPRLVTLLLGGNRIEE-ITDGFF--QSMSTLRVLSLRINISLRKLPSGIRGLPQE  271 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~-----l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~--~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~  271 (566)
                      .++++.+....+..     +.....+++|+.|++++|.+.. .|.. +  +.+++|++|++++| .+......+  -...
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~--~~~~  140 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWL--AELQ  140 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSH--HHHH
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecc-cccchhhhh--HHHH
Confidence            45666666554432     1122334557777777776653 3433 4  67777777777777 665321110  0022


Q ss_pred             hhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       272 i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +..+++|++|++++| .+..+|...++.+++|++|++++|...
T Consensus       141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred             hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc
Confidence            356777777777777 666666544777777777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=4.8e-15  Score=148.05  Aligned_cols=202  Identities=19%  Similarity=0.125  Sum_probs=133.3

Q ss_pred             ccccEEEeecCCcccc-cCCCCCCCccEEEecCCcccc--cchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          199 EGAKRVSLMGNGIRSL-SEIPTCPRLVTLLLGGNRIEE--ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l-~~~~~~~~Lr~L~l~~~~l~~--lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ..++.+.+.++.+... +....+++|++|++++|.+..  ++.. +..+++|++|++++| .++.      ..|..++++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~-~l~~------~~~~~l~~~  141 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGL-RLSD------PIVNTLAKN  141 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTC-BCCH------HHHHHHTTC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCc-ccCH------HHHHHHhcC
Confidence            5788888888877654 345778999999999998764  5554 899999999999999 7762      345557889


Q ss_pred             ccCcEecccCcccCCc--cchhhhcCCCCCcEEEecCC-CCcccccccccccccCccchHhhhcCCC-CCceEEEEEcCc
Q 008415          276 EKLRYLNLDYTRFLSI--IPHQLISGFSKLEVLRLFGC-GFWVVTEEEGNVLCEDAEPLMKELLGSK-HLNVLSWTFRSS  351 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~i~~~~~  351 (566)
                      ++|++|++++|..++.  +|.. +.++++|++|++.+| .+..             ......+..++ +|+.|+++.+..
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~-------------~~~~~~~~~l~~~L~~L~l~~~~~  207 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE-------------KHVQVAVAHVSETITQLNLSGYRK  207 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH-------------HHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             CCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh-------------HHHHHHHHhcccCCCEEEeCCCcc
Confidence            9999999999966774  6665 889999999999999 6543             12455677788 888888875421


Q ss_pred             -cchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEe
Q 008415          352 -LGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVS  429 (566)
Q Consensus       352 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~  429 (566)
                       .....+..                          .+..+++|+.|++++|. +.....        .....+++|++|+
T Consensus       208 ~~~~~~l~~--------------------------~~~~~~~L~~L~l~~~~~l~~~~~--------~~l~~l~~L~~L~  253 (336)
T 2ast_B          208 NLQKSDLST--------------------------LVRRCPNLVHLDLSDSVMLKNDCF--------QEFFQLNYLQHLS  253 (336)
T ss_dssp             GSCHHHHHH--------------------------HHHHCTTCSEEECTTCTTCCGGGG--------GGGGGCTTCCEEE
T ss_pred             cCCHHHHHH--------------------------HHhhCCCCCEEeCCCCCcCCHHHH--------HHHhCCCCCCEee
Confidence             00011111                          12344566666666655 332111        1113446666666


Q ss_pred             cccCcCCCC--CchhhccCCcceEeEecc
Q 008415          430 VHYCRKAKD--LTWLVFVQNLKVLRIGDC  456 (566)
Q Consensus       430 L~~c~~l~~--l~~l~~l~~L~~L~L~~~  456 (566)
                      +++|.....  +..++.+++|++|+|++|
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            666643222  123555666666666666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.54  E-value=1.5e-15  Score=154.83  Aligned_cols=92  Identities=22%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             CCCCccEEEecCCcccccchH----HHhcCccCCEEecCCCCCCccc----cccccccCcchhccccCcEecccCcccCC
Q 008415          219 TCPRLVTLLLGGNRIEEITDG----FFQSMSTLRVLSLRINISLRKL----PSGIRGLPQELKALEKLRYLNLDYTRFLS  290 (566)
Q Consensus       219 ~~~~Lr~L~l~~~~l~~lp~~----~~~~l~~Lr~L~L~~~~~i~~l----p~~i~~LP~~i~~L~~L~~L~L~~~~~l~  290 (566)
                      .+++|++|++++|.+......    .+..+++|++|+|++| .+..+    |..+..+...+.++++|++|++++| .++
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG  107 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence            345555555555544322111    1334555555555554 43322    2222222223345555555555555 444


Q ss_pred             c-----cchhhhcCCCCCcEEEecCCCC
Q 008415          291 I-----IPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       291 ~-----lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      .     +|.. +..+++|++|++++|.+
T Consensus       108 ~~~~~~l~~~-l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          108 PTAQEPLIDF-LSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTTHHHHHHH-HHHCTTCCEEECCSSCC
T ss_pred             HHHHHHHHHH-HHhCCCCCEEECcCCCC
Confidence            3     4443 55555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=1e-14  Score=156.30  Aligned_cols=103  Identities=27%  Similarity=0.386  Sum_probs=59.2

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .+..++.|.+.++.+..++.+..+++|+.|++++|.+..++.  +..+++|++|+|++| .+..+|        .+..++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~--------~l~~l~  109 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--------SLKDLK  109 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT--------TSTTCT
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh--------hhccCC
Confidence            344555566666665555555556666666666665555554  555666666666666 555433        145556


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      +|++|+|++| .+..+|.  +..|++|+.|++++|.+
T Consensus       110 ~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l  143 (605)
T 1m9s_A          110 KLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKI  143 (605)
T ss_dssp             TCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred             CCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCcc
Confidence            6666666666 5555544  55566666666665544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.51  E-value=2.4e-15  Score=157.20  Aligned_cols=291  Identities=18%  Similarity=0.147  Sum_probs=174.0

Q ss_pred             cccEEEeecCCccc-----c-cCCCCCCCccEEEecCCcccccc-----hHHHhcCccCCEEecCCCCCCcccccccccc
Q 008415          200 GAKRVSLMGNGIRS-----L-SEIPTCPRLVTLLLGGNRIEEIT-----DGFFQSMSTLRVLSLRINISLRKLPSGIRGL  268 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~-----l-~~~~~~~~Lr~L~l~~~~l~~lp-----~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L  268 (566)
                      ++++|++.+|.+..     + ..+..+++|++|++++|.+....     ..+....++|++|++++| .++....  ..+
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~--~~l  162 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC--EPL  162 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH--HHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH--HHH
Confidence            57788887777663     1 23567778888888887664321     121222456888888888 7664322  234


Q ss_pred             CcchhccccCcEecccCcccCCccchhhhc-----CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCce
Q 008415          269 PQELKALEKLRYLNLDYTRFLSIIPHQLIS-----GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNV  343 (566)
Q Consensus       269 P~~i~~L~~L~~L~L~~~~~l~~lP~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~  343 (566)
                      +..+..+++|++|++++| .+...+...+.     .+++|++|++++|.+...          ........+..+++|+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----------~~~~l~~~l~~~~~L~~  231 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----------NCRDLCGIVASKASLRE  231 (461)
T ss_dssp             HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----------HHHHHHHHHHHCTTCCE
T ss_pred             HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----------HHHHHHHHHHhCCCccE
Confidence            555677788888888888 56543221122     366888888888876541          00123556778889999


Q ss_pred             EEEEEcCccc--hhccccC-CcccccceEEEEecccCCCCCee---e-eccccccCcceEEEeccccceeeecccccccc
Q 008415          344 LSWTFRSSLG--VQNFLKY-PKLVSITQSVLVKSGVHTSPPFN---V-LHLAYMENLQKFELESCNLEEMKIDSTEEVKK  416 (566)
Q Consensus       344 L~i~~~~~~~--~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~-~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~  416 (566)
                      |+++.+....  ...+... .....+|+.|++++ +. .....   + ..+..+++|++|++++|.+.........  ..
T Consensus       232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~--~~  307 (461)
T 1z7x_W          232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-CG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ET  307 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH--HH
T ss_pred             EeccCCcCChHHHHHHHHHHhcCCCCceEEECcC-CC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH--HH
Confidence            9998664322  1111111 11246899999987 52 22211   1 1355678999999999884321111000  00


Q ss_pred             cCccCCCcccEEecccCcCCCCC-----c-hhhccCCcceEeEecccCcccccccccccccccccCCCC-ccccccceee
Q 008415          417 LFQSGFRSLNTVSVHYCRKAKDL-----T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEH-NFFAQLEYLS  489 (566)
Q Consensus       417 ~~~~~l~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~-~~f~~L~~L~  489 (566)
                      . ....++|++|++++|. +...     + .+..+++|++|++++|. +........        ...+ ...++|+.|+
T Consensus       308 l-~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l--------~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          308 L-LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVREL--------CQGLGQPGSVLRVLW  376 (461)
T ss_dssp             H-TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHH--------HHHHTSTTCCCCEEE
T ss_pred             h-ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHH--------HHHHcCCCCceEEEE
Confidence            0 0134699999999985 4332     2 26678999999999884 332211000        0011 1267999999


Q ss_pred             cccccccc-----ccCCCCCCCCCccEEeecCCCCCC
Q 008415          490 ISWGTNLK-----SVYPNPLPFPKLKKIDVCHCPQLK  521 (566)
Q Consensus       490 L~~~~~L~-----~l~~~~~~~p~L~~L~i~~C~~L~  521 (566)
                      +++|. ++     .++.....+++|++|++++| .+.
T Consensus       377 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~  411 (461)
T 1z7x_W          377 LADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLG  411 (461)
T ss_dssp             CTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             CCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence            99874 55     34433445899999999997 454

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=6.9e-14  Score=149.87  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415          216 EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       216 ~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~  295 (566)
                      ....+++|+.|++++|.+..++.  +..+++|++|+|++| .+..+|.        +..+++|++|+|++| .+..+|. 
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l~~-  104 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--------LTNLKNLGWLFLDEN-KIKDLSS-  104 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--------GGGCTTCCEEECCSS-CCCCCTT-
T ss_pred             chhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--------hccCCCCCEEECcCC-CCCCChh-
Confidence            33445555555555555555542  455555555555555 5544332        355555555555555 4555553 


Q ss_pred             hhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecc
Q 008415          296 LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSG  375 (566)
Q Consensus       296 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (566)
                       +..+++|++|++++|.+..                +..+..+++|+.|+++.+....+.    ....+.+|+.|++++ 
T Consensus       105 -l~~l~~L~~L~Ls~N~l~~----------------l~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~-  162 (605)
T 1m9s_A          105 -LKDLKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLED-  162 (605)
T ss_dssp             -STTCTTCCEEECTTSCCCC----------------CGGGGGCTTCSEEECCSSCCCCCG----GGGSCTTCSEEECCS-
T ss_pred             -hccCCCCCEEEecCCCCCC----------------CccccCCCccCEEECCCCccCCch----hhcccCCCCEEECcC-
Confidence             5555555555555554432                123455555555555544333221    112234555555554 


Q ss_pred             cCCCCCeeeeccccccCcceEEEeccc
Q 008415          376 VHTSPPFNVLHLAYMENLQKFELESCN  402 (566)
Q Consensus       376 ~~~~~~~~~~~l~~~~~L~~L~l~~~~  402 (566)
                      +. ..  ....+..+++|+.|+|++|.
T Consensus       163 N~-l~--~~~~l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          163 NQ-IS--DIVPLAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             SC-CC--CCGGGTTCTTCCEEECCSSC
T ss_pred             Cc-CC--CchhhccCCCCCEEECcCCC
Confidence            21 11  11124455555555555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.51  E-value=9.8e-15  Score=157.60  Aligned_cols=103  Identities=12%  Similarity=0.067  Sum_probs=56.0

Q ss_pred             CCcccEEecccCcC-CCC--Cchhh-ccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccc
Q 008415          422 FRSLNTVSVHYCRK-AKD--LTWLV-FVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK  497 (566)
Q Consensus       422 l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~  497 (566)
                      +++|++|+++.|.. +.+  +..++ .+++|++|+|++|..-...            ++.....+++|++|+|++|+ ++
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------~~~~~~~~~~L~~L~l~~n~-l~  501 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG------------LMEFSRGCPNLQKLEMRGCC-FS  501 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH------------HHHHHTCCTTCCEEEEESCC-CB
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH------------HHHHHhcCcccCeeeccCCC-Cc
Confidence            55666666655443 121  12222 2566666666655421110            11124567899999999987 43


Q ss_pred             c--cCCCCCCCCCccEEeecCCCCCCCCCC-CCccccCCcEEEe
Q 008415          498 S--VYPNPLPFPKLKKIDVCHCPQLKKLPL-NSSSAKERRVVIE  538 (566)
Q Consensus       498 ~--l~~~~~~~p~L~~L~i~~C~~L~~lP~-~~~~~l~~L~i~~  538 (566)
                      .  ++.....+|+|+.|++++|+ ++.-.. .+...++.+.+..
T Consensus       502 ~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~  544 (592)
T 3ogk_B          502 ERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIEL  544 (592)
T ss_dssp             HHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEE
T ss_pred             HHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEE
Confidence            2  22222357999999999997 654321 1222245565543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=8.6e-14  Score=128.75  Aligned_cols=103  Identities=26%  Similarity=0.403  Sum_probs=63.0

Q ss_pred             EEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEec
Q 008415          203 RVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLN  282 (566)
Q Consensus       203 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~  282 (566)
                      .+...++.+..+|. ...++|+.|++++|.+..++...++.+++|++|++++| .++.+|...      +.++++|++|+
T Consensus        11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~l~~L~~L~   82 (208)
T 2o6s_A           11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGV------FNKLTSLTYLN   82 (208)
T ss_dssp             EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCCEEE
T ss_pred             EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhh------cCCCCCcCEEE
Confidence            34444555555542 22356667777766666666655666677777777766 666555433      56666777777


Q ss_pred             ccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          283 LDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       283 L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +++| .++.+|...++.+++|++|++++|.+.
T Consensus        83 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           83 LSTN-QLQSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCC-cCCccCHhHhcCccCCCEEEcCCCcCc
Confidence            7766 566666554566667777776666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=1.9e-13  Score=127.50  Aligned_cols=146  Identities=20%  Similarity=0.271  Sum_probs=112.5

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+...+..+..+|..- ...++.|.+.+|.+..++  .+..+++|+.|++++|.+..++...|.++++|++|+|++| .+
T Consensus        15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CC
T ss_pred             EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cC
Confidence            3555566666666422 267889999998888876  4677889999999999888775555888999999999999 88


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      +.+|..+      +..+++|++|++++| .++.++.+.+..+++|++|++++|.+..              .....+..+
T Consensus        93 ~~l~~~~------f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l  151 (220)
T 2v9t_B           93 TELPKSL------FEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT--------------IAKGTFSPL  151 (220)
T ss_dssp             CCCCTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--------------CCTTTTTTC
T ss_pred             CccCHhH------ccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE--------------ECHHHHhCC
Confidence            8877655      688889999999998 7888866558889999999999888765              233456777


Q ss_pred             CCCceEEEEEc
Q 008415          339 KHLNVLSWTFR  349 (566)
Q Consensus       339 ~~L~~L~i~~~  349 (566)
                      ++|+.|++..+
T Consensus       152 ~~L~~L~L~~N  162 (220)
T 2v9t_B          152 RAIQTMHLAQN  162 (220)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEEeCCC
Confidence            78888777743

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.47  E-value=1.5e-14  Score=156.07  Aligned_cols=156  Identities=12%  Similarity=0.076  Sum_probs=91.9

Q ss_pred             cccEEEeecCCcc---cccC-CCCCCCccEEEecCCcccccc----hHHHhcCccCCEEecCCCCCCccccccccccCcc
Q 008415          200 GAKRVSLMGNGIR---SLSE-IPTCPRLVTLLLGGNRIEEIT----DGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE  271 (566)
Q Consensus       200 ~lr~Lsl~~~~~~---~l~~-~~~~~~Lr~L~l~~~~l~~lp----~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~  271 (566)
                      ++++|.+.++...   .++. ...+++|++|++++|.+....    ..++..+++|++|+++++ .++.+..  ..++..
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~--~~l~~~  215 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISP--KDLETI  215 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCH--HHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCH--HHHHHH
Confidence            4777887766421   1111 136788888888888654321    223567888888888888 7653332  234555


Q ss_pred             hhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCc
Q 008415          272 LKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSS  351 (566)
Q Consensus       272 i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~  351 (566)
                      +.++++|++|++++| .+..+|.. +..+++|++|++........           .......+..+++|+.|++.....
T Consensus       216 ~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~l~~~~~L~~L~l~~~~~  282 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDIG-----------MPEKYMNLVFPRKLCRLGLSYMGP  282 (592)
T ss_dssp             HHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCTT-----------CTTSSSCCCCCTTCCEEEETTCCT
T ss_pred             HhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhcccccccccc-----------hHHHHHHhhccccccccCccccch
Confidence            677888888888888 67778865 88888888888875332210           112233445555666655543221


Q ss_pred             cchhccccCCcccccceEEEEec
Q 008415          352 LGVQNFLKYPKLVSITQSVLVKS  374 (566)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~  374 (566)
                      ..++   ......++|+.|++++
T Consensus       283 ~~l~---~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          283 NEMP---ILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             TTGG---GGGGGGGGCCEEEETT
T ss_pred             hHHH---HHHhhcCCCcEEecCC
Confidence            1222   2222335666666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.46  E-value=2.4e-14  Score=145.87  Aligned_cols=243  Identities=15%  Similarity=0.103  Sum_probs=149.1

Q ss_pred             ccccccEEEeecCCcccc------cCCCCCCCccEEEecCCccc----ccchHH------HhcCccCCEEecCCCCCCcc
Q 008415          197 EWEGAKRVSLMGNGIRSL------SEIPTCPRLVTLLLGGNRIE----EITDGF------FQSMSTLRVLSLRINISLRK  260 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l------~~~~~~~~Lr~L~l~~~~l~----~lp~~~------~~~l~~Lr~L~L~~~~~i~~  260 (566)
                      ...++++|++.+|.+...      ..+..+++|++|++++|.+.    .+|..+      +..+++|++|+|++| .+..
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~  108 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP  108 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCH
Confidence            346899999999987653      13578999999999998554    334442      478999999999999 8764


Q ss_pred             ccccccccCcchhccccCcEecccCcccCCccchhh----hcCC---------CCCcEEEecCCCCcccccccccccccC
Q 008415          261 LPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL----ISGF---------SKLEVLRLFGCGFWVVTEEEGNVLCED  327 (566)
Q Consensus       261 lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~----i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~  327 (566)
                      --  ...+|..+.++++|++|++++| .++..+...    +..+         ++|++|++++|.+...          .
T Consensus       109 ~~--~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~----------~  175 (386)
T 2ca6_A          109 TA--QEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG----------S  175 (386)
T ss_dssp             TT--HHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG----------G
T ss_pred             HH--HHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH----------H
Confidence            11  1235666799999999999999 675432211    4444         8999999999987531          0


Q ss_pred             ccchHhhhcCCCCCceEEEEEcCcc--chhcccc-CCcccccceEEEEecccCCCCC---eee-eccccccCcceEEEec
Q 008415          328 AEPLMKELLGSKHLNVLSWTFRSSL--GVQNFLK-YPKLVSITQSVLVKSGVHTSPP---FNV-LHLAYMENLQKFELES  400 (566)
Q Consensus       328 ~~~~~~~l~~L~~L~~L~i~~~~~~--~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~-~~l~~~~~L~~L~l~~  400 (566)
                      .......+..+++|+.|+++.+...  +...+.. .....++|+.|++++ +. ...   ..+ ..+..+++|+.|++++
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~-l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NT-FTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SC-CHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-CC-CCcHHHHHHHHHHccCCCcCEEECCC
Confidence            1112246778889999999876543  2222222 333446677777776 32 110   001 1355667777777777


Q ss_pred             cccceeeecccccccccCccCCCcccEEecccCcCCCC-----Cch-h-hccCCcceEeEecccC
Q 008415          401 CNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-----LTW-L-VFVQNLKVLRIGDCYD  458 (566)
Q Consensus       401 ~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~~-l-~~l~~L~~L~L~~~~~  458 (566)
                      |.+........  +.......+++|++|+|++|. +..     ++. + ..+++|++|++++|..
T Consensus       254 n~i~~~~~~~l--~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          254 CLLSARGAAAV--VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             CCCCHHHHHHH--HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCchhhHHHH--HHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            66322100000  000111235677777777653 333     433 3 4467777777766653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.45  E-value=6.1e-13  Score=124.94  Aligned_cols=144  Identities=23%  Similarity=0.205  Sum_probs=108.5

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +.+.+..+..+|.. -..++++|.+++|.+..++  .+..+++|++|++++|.+..+|...|..+++|++|+|++| .++
T Consensus        24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~  101 (229)
T 3e6j_A           24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLT  101 (229)
T ss_dssp             EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCC
Confidence            44455555666542 2367888888888888764  3577888888888888888888776788888888888888 888


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK  339 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  339 (566)
                      .+|...      +..+++|++|++++| .++.+|.. +..+++|++|++++|.+..              .....+..++
T Consensus       102 ~l~~~~------~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~  159 (229)
T 3e6j_A          102 VLPSAV------FDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKS--------------IPHGAFDRLS  159 (229)
T ss_dssp             CCCTTT------TTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC--------------CCTTTTTTCT
T ss_pred             ccChhH------hCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCc--------------cCHHHHhCCC
Confidence            777554      678888888888888 78888887 7888888888888887754              2234567777


Q ss_pred             CCceEEEEEc
Q 008415          340 HLNVLSWTFR  349 (566)
Q Consensus       340 ~L~~L~i~~~  349 (566)
                      +|+.|++..+
T Consensus       160 ~L~~L~l~~N  169 (229)
T 3e6j_A          160 SLTHAYLFGN  169 (229)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEEeeCC
Confidence            7887777643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=4.5e-13  Score=125.01  Aligned_cols=124  Identities=23%  Similarity=0.303  Sum_probs=101.9

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      +.+...++.+..+|... .++|+.|++++|.+..++...|..+++|++|+|++| .++.++      |..+.++++|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~------~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELA------PDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEEC------TTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcC------HHHhhCCcCCCEE
Confidence            56777888888887533 379999999999999998866899999999999999 888664      3447999999999


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                      +|++| .++.+|.+++..+++|++|++++|.+..              ..+..+..+++|+.|+++.
T Consensus        86 ~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           86 VLYGN-KITELPKSLFEGLFSLQLLLLNANKINC--------------LRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCS
T ss_pred             ECCCC-cCCccCHhHccCCCCCCEEECCCCCCCE--------------eCHHHcCCCCCCCEEECCC
Confidence            99999 8999998867899999999999998765              2345566777777776663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.44  E-value=3.5e-15  Score=155.94  Aligned_cols=297  Identities=18%  Similarity=0.134  Sum_probs=179.9

Q ss_pred             cccccccEEEeecCCcccc-----c-CCCCCCCccEEEecCCccccc-chHHHhcCc----cCCEEecCCCCCCcccccc
Q 008415          196 EEWEGAKRVSLMGNGIRSL-----S-EIPTCPRLVTLLLGGNRIEEI-TDGFFQSMS----TLRVLSLRINISLRKLPSG  264 (566)
Q Consensus       196 ~~~~~lr~Lsl~~~~~~~l-----~-~~~~~~~Lr~L~l~~~~l~~l-p~~~~~~l~----~Lr~L~L~~~~~i~~lp~~  264 (566)
                      ..++++++|++.++.+...     + .+..+++|++|++++|.+... +..++..++    +|++|++++| .++...- 
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~-  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC-  102 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH-
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH-
Confidence            3456788888888877632     2 245678888888888877642 333344555    6888888888 7763211 


Q ss_pred             ccccCcchhccccCcEecccCcccCCccc-----hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415          265 IRGLPQELKALEKLRYLNLDYTRFLSIIP-----HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK  339 (566)
Q Consensus       265 i~~LP~~i~~L~~L~~L~L~~~~~l~~lP-----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  339 (566)
                       ..+|..+.++++|++|++++| .++...     .......++|++|++++|.+...          ........++.++
T Consensus       103 -~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----------~~~~l~~~l~~~~  170 (461)
T 1z7x_W          103 -GVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA----------SCEPLASVLRAKP  170 (461)
T ss_dssp             -HHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG----------GHHHHHHHHHHCT
T ss_pred             -HHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH----------HHHHHHHHHhhCC
Confidence             234555788888888888888 565322     22122356788888888876541          0112345567788


Q ss_pred             CCceEEEEEcCccc--hhccccCC-cccccceEEEEecccCCCCCee----eeccccccCcceEEEeccccceeeecccc
Q 008415          340 HLNVLSWTFRSSLG--VQNFLKYP-KLVSITQSVLVKSGVHTSPPFN----VLHLAYMENLQKFELESCNLEEMKIDSTE  412 (566)
Q Consensus       340 ~L~~L~i~~~~~~~--~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~l~~~~~~  412 (566)
                      +|+.|+++.+....  ...+.... ....+|+.|++++ +. .....    ...+..+++|++|++++|.+.........
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  248 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES-CG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC  248 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT-SC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC-CC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence            99999998654322  11121111 0124889999987 53 12211    11355678999999999884321111000


Q ss_pred             cccccCccCCCcccEEecccCcCCCC-----Cch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccc
Q 008415          413 EVKKLFQSGFRSLNTVSVHYCRKAKD-----LTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLE  486 (566)
Q Consensus       413 ~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~  486 (566)
                       +.+  ...+++|++|++++| .+..     ++. +..+++|++|++++|.... ........       ......++|+
T Consensus       249 -~~~--~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~-------~l~~~~~~L~  316 (461)
T 1z7x_W          249 -PGL--LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCE-------TLLEPGCQLE  316 (461)
T ss_dssp             -HHH--TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-HHHHHHHH-------HHTSTTCCCC
T ss_pred             -HHH--hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCch-HHHHHHHH-------HhccCCccce
Confidence             000  124789999999997 4554     333 6678999999999885322 11100000       0012346999


Q ss_pred             eeecccccccccc-----CCCCCCCCCccEEeecCCCCCCC
Q 008415          487 YLSISWGTNLKSV-----YPNPLPFPKLKKIDVCHCPQLKK  522 (566)
Q Consensus       487 ~L~L~~~~~L~~l-----~~~~~~~p~L~~L~i~~C~~L~~  522 (566)
                      .|++++|. ++..     +.....+++|++|++++| .+..
T Consensus       317 ~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~  355 (461)
T 1z7x_W          317 SLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLED  355 (461)
T ss_dssp             EEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHH
T ss_pred             eeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-cccc
Confidence            99999885 4332     212234689999999998 5553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.44  E-value=5.6e-13  Score=124.32  Aligned_cols=146  Identities=19%  Similarity=0.259  Sum_probs=110.7

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccC---CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE---IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      .+...+..+..+|.. -...+++|.+++|.+..++.   +..+++|++|++++|.+..++...|+++++|++|+|++| .
T Consensus        15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R   92 (220)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence            344555556666542 23567888888888887742   567888999999998888887766888899999999988 8


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG  337 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (566)
                      ++.+|...      ++.+++|++|++++| .++.++...+..+++|++|++++|.+..              ..+..+..
T Consensus        93 l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~  151 (220)
T 2v70_A           93 LENVQHKM------FKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT--------------VAPGAFDT  151 (220)
T ss_dssp             CCCCCGGG------GTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC--------------BCTTTTTT
T ss_pred             cCccCHhH------hcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE--------------ECHHHhcC
Confidence            88776543      788889999999988 7888755448888999999998887765              34566777


Q ss_pred             CCCCceEEEEEc
Q 008415          338 SKHLNVLSWTFR  349 (566)
Q Consensus       338 L~~L~~L~i~~~  349 (566)
                      +++|+.|+++.+
T Consensus       152 l~~L~~L~L~~N  163 (220)
T 2v70_A          152 LHSLSTLNLLAN  163 (220)
T ss_dssp             CTTCCEEECCSC
T ss_pred             CCCCCEEEecCc
Confidence            888888887754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=7.5e-13  Score=122.36  Aligned_cols=143  Identities=23%  Similarity=0.348  Sum_probs=116.9

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      +...+.++..+|.. ...++++|++.+|.+..++.  +..+++|++|++++|.+..++...|..+++|++|++++| .++
T Consensus        12 v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~   89 (208)
T 2o6s_A           12 VECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ   89 (208)
T ss_dssp             EECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             EEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCC
Confidence            44455555556532 24689999999999988775  578999999999999999999887899999999999999 998


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK  339 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  339 (566)
                      .+|...      ++++++|++|++++| .++.+|...+..+++|++|++++|.+..              .....+..++
T Consensus        90 ~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------------~~~~~~~~l~  148 (208)
T 2o6s_A           90 SLPNGV------FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKS--------------VPDGVFDRLT  148 (208)
T ss_dssp             CCCTTT------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--------------CCTTTTTTCT
T ss_pred             ccCHhH------hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccce--------------eCHHHhccCC
Confidence            877654      789999999999999 8999998767999999999999998754              2223456677


Q ss_pred             CCceEEEE
Q 008415          340 HLNVLSWT  347 (566)
Q Consensus       340 ~L~~L~i~  347 (566)
                      +|+.|+++
T Consensus       149 ~L~~L~l~  156 (208)
T 2o6s_A          149 SLQYIWLH  156 (208)
T ss_dssp             TCCEEECC
T ss_pred             CccEEEec
Confidence            77777666

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=3.3e-13  Score=133.04  Aligned_cols=203  Identities=13%  Similarity=0.024  Sum_probs=143.4

Q ss_pred             ccccEEEeecCCccccc-C-C--CCCCCccEEEecCCccccc----chHHHhcCccCCEEecCCCCCCccccccccccCc
Q 008415          199 EGAKRVSLMGNGIRSLS-E-I--PTCPRLVTLLLGGNRIEEI----TDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQ  270 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~-~-~--~~~~~Lr~L~l~~~~l~~l----p~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~  270 (566)
                      .++++|++.+|.+.... . +  ..+++|++|++++|.+...    +...+..+++|++|+|++| .+..+|..      
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~------  163 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCE------  163 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTT------
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHH------
Confidence            56999999999887543 2 3  7799999999999987742    2233567999999999999 88876643      


Q ss_pred             chhccccCcEecccCcccCCc---cchh-hhcCCCCCcEEEecCCCCcccccccccccccCccchHhh-hcCCCCCceEE
Q 008415          271 ELKALEKLRYLNLDYTRFLSI---IPHQ-LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKE-LLGSKHLNVLS  345 (566)
Q Consensus       271 ~i~~L~~L~~L~L~~~~~l~~---lP~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~  345 (566)
                      .++++++|++|++++| .+..   ++.. .++.+++|++|++++|.+..            .+..... ++.+++|+.|+
T Consensus       164 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          164 QVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMET------------PTGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             SCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------------HHHHHHHHHHHTCCCSSEE
T ss_pred             HhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCc------------hHHHHHHHHhcCCCCCEEE
Confidence            4789999999999999 5543   4332 13789999999999998754            1122222 46777788777


Q ss_pred             EEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcc
Q 008415          346 WTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSL  425 (566)
Q Consensus       346 i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L  425 (566)
                      ++.+.....                         .......+..+++|++|++++|.++.+|.           ..+++|
T Consensus       231 Ls~N~l~~~-------------------------~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------~~~~~L  274 (310)
T 4glp_A          231 LSHNSLRAT-------------------------VNPSAPRCMWSSALNSLNLSFAGLEQVPK-----------GLPAKL  274 (310)
T ss_dssp             CTTSCCCCC-------------------------CCSCCSSCCCCTTCCCEECCSSCCCSCCS-----------CCCSCC
T ss_pred             CCCCCCCcc-------------------------chhhHHhccCcCcCCEEECCCCCCCchhh-----------hhcCCC
Confidence            764321110                         00001122234789999999988555432           124799


Q ss_pred             cEEecccCcCCCCCchhhccCCcceEeEecccC
Q 008415          426 NTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYD  458 (566)
Q Consensus       426 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~  458 (566)
                      +.|+|+++ .+..+|.+..+++|+.|++++++.
T Consensus       275 ~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          275 RVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred             CEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence            99999885 677777778899999999988764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.42  E-value=8e-13  Score=124.13  Aligned_cols=124  Identities=23%  Similarity=0.314  Sum_probs=99.5

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..+.++..++.+..+|.. -.++|++|++++|.+..++...|..+++|++|+|++| .++.+|...      +..+++|+
T Consensus        20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~------~~~l~~L~   91 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGV------FDSLTQLT   91 (229)
T ss_dssp             ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTCTTCC
T ss_pred             eCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhh------cccCCCcC
Confidence            455688888888888753 3489999999999998886666899999999999999 898877654      68899999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      +|++++| .++.+|...+..+++|++|++++|.+..               .+..+..+++|+.|+++
T Consensus        92 ~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------------lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           92 VLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTE---------------LPRGIERLTHLTHLALD  143 (229)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCS---------------CCTTGGGCTTCSEEECC
T ss_pred             EEECCCC-cCCccChhHhCcchhhCeEeccCCcccc---------------cCcccccCCCCCEEECC
Confidence            9999999 8999988767899999999999887754               33445666666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.42  E-value=7.9e-13  Score=121.07  Aligned_cols=125  Identities=15%  Similarity=0.161  Sum_probs=97.9

Q ss_pred             cccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          196 EEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       196 ~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ..+.+++++++.++.+..++.+..+++|++|++++|.+..++ . +..+++|++|++++| .++.      ..|..++++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n-~l~~------~~~~~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGK-DVTS------DKIPNLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECT-TCBG------GGSCCCTTC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECC-ccCc------ccChhhcCC
Confidence            445789999999999988888888999999999999777665 3 788999999999999 8764      233446889


Q ss_pred             ccCcEecccCcccCCc-cchhhhcCCCCCcEEEecCCC-CcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          276 EKLRYLNLDYTRFLSI-IPHQLISGFSKLEVLRLFGCG-FWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~-lP~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      ++|++|++++| .++. .|.. ++.+++|++|++++|. ...                +..+..+++|+.|+++
T Consensus       112 ~~L~~L~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~----------------~~~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          112 TSLTLLDISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITD----------------IMPLKTLPELKSLNIQ  167 (197)
T ss_dssp             TTCCEEECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCC----------------CGGGGGCSSCCEEECT
T ss_pred             CCCCEEEecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccc----------------cHhhcCCCCCCEEECC
Confidence            99999999999 6775 4554 8999999999999887 432                2356677777776665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=122.00  Aligned_cols=124  Identities=17%  Similarity=0.265  Sum_probs=97.8

Q ss_pred             ccEEEeecCCcccccCCCCCCCccEEEecCCccccc-chHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEI-TDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l-p~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      -++++++++.+..+|.. -.+.++.|++++|.+..+ +..+|+.+++|++|+|++| .++.+|..      .++++++|+
T Consensus        13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~------~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG------AFEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT------TTTTCTTCC
T ss_pred             CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHH------HhCCCCCCC
Confidence            35788888888888752 345788999999998887 4455789999999999999 88877653      378999999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      +|++++| .++.+|.+.+..+++|++|++++|.+..              ..+..+..+++|+.|+++
T Consensus        85 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           85 EILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITC--------------VGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             EEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCC--------------BCTTSSTTCTTCSEEECT
T ss_pred             EEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCe--------------ECHhHcCCCccCCEEECC
Confidence            9999999 7888888778899999999999988765              234456666666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.40  E-value=1.4e-12  Score=119.38  Aligned_cols=144  Identities=15%  Similarity=0.211  Sum_probs=119.5

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCCCc
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      .+...+..+..++....+.++++|.+.+|.+..++.+..+++|++|++++|.+.. .+.. ++.+++|++|++++| .++
T Consensus        48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~i~  125 (197)
T 4ezg_A           48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-AHD  125 (197)
T ss_dssp             EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS-BCB
T ss_pred             EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC-ccC
Confidence            3455566667777777889999999999999888888999999999999998875 4555 899999999999999 887


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCC
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSK  339 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  339 (566)
                      .      ..|..++++++|++|++++|..++.+|.  +..+++|++|++++|.+..                +..+..++
T Consensus       126 ~------~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------------~~~l~~l~  181 (197)
T 4ezg_A          126 D------SILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------------YRGIEDFP  181 (197)
T ss_dssp             G------GGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------------CTTGGGCS
T ss_pred             c------HhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------------hHHhccCC
Confidence            4      2344579999999999999944999985  9999999999999998754                22678889


Q ss_pred             CCceEEEEEcC
Q 008415          340 HLNVLSWTFRS  350 (566)
Q Consensus       340 ~L~~L~i~~~~  350 (566)
                      +|+.|+++.+.
T Consensus       182 ~L~~L~l~~N~  192 (197)
T 4ezg_A          182 KLNQLYAFSQT  192 (197)
T ss_dssp             SCCEEEECBC-
T ss_pred             CCCEEEeeCcc
Confidence            99999988543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.39  E-value=7.2e-13  Score=133.55  Aligned_cols=107  Identities=23%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             cccEEEeecCCcccccC--CC-CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          200 GAKRVSLMGNGIRSLSE--IP-TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~--~~-~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .++.|++++|.+..++.  +. .+++|++|++++|.+..++...|.++++|++|+|++| .++.+|...      +.+++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~  112 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFL------FSDLQ  112 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT------TTTCT
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHH------hCCCc
Confidence            45555555555555442  22 4555555555555555555444555555555555555 555444332      45555


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +|++|+|++| .++.++...+..+++|++|++++|.+.
T Consensus       113 ~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          113 ALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCC
Confidence            5555555555 455554333555555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=1.1e-12  Score=125.89  Aligned_cols=150  Identities=20%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             CCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          193 PKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       193 ~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      +....+.++++|++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .++.+|..        
T Consensus        35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~--------  103 (263)
T 1xeu_A           35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGI--------  103 (263)
T ss_dssp             ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTC--------
T ss_pred             cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcc--------
Confidence            3344556777777777777777777777778888887777777765  677777888888877 77766542        


Q ss_pred             hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCcc
Q 008415          273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSL  352 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~  352 (566)
                      .. .+|++|++++| .++.+|.  ++.+++|++|++++|.+..                +..++.+++|+.|+++.+.. 
T Consensus       104 ~~-~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~----------------~~~l~~l~~L~~L~L~~N~i-  162 (263)
T 1xeu_A          104 PS-ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS----------------IVMLGFLSKLEVLDLHGNEI-  162 (263)
T ss_dssp             CC-SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB----------------CGGGGGCTTCCEEECTTSCC-
T ss_pred             cc-CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC----------------ChHHccCCCCCEEECCCCcC-
Confidence            22 77778888777 6777764  7777788888877776643                12455666666666553211 


Q ss_pred             chhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEecccc
Q 008415          353 GVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNL  403 (566)
Q Consensus       353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  403 (566)
                                                 ...  ..+..+++|+.|++++|.+
T Consensus       163 ---------------------------~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          163 ---------------------------TNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ---------------------------CBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             ---------------------------cch--HHhccCCCCCEEeCCCCcc
Confidence                                       111  3456677888888888773

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=2.8e-13  Score=130.07  Aligned_cols=167  Identities=19%  Similarity=0.222  Sum_probs=128.3

Q ss_pred             cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      +.++..+.+..+.+.+++.+..+++|++|++++|.+..++ . ++.+++|++|++++| .++.+|.        ++++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~--------l~~l~~   86 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP--------LKDLTK   86 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG--------GTTCSS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh--------hccCCC
Confidence            4556666777788888777788899999999999988888 3 788999999999999 8877664        588999


Q ss_pred             CcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcc
Q 008415          278 LRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNF  357 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~  357 (566)
                      |++|++++| .++.+|.  +.. ++|++|++++|.+..                +..++.+++|+.|+++.+.       
T Consensus        87 L~~L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N~l~~----------------~~~l~~l~~L~~L~Ls~N~-------  139 (263)
T 1xeu_A           87 LEELSVNRN-RLKNLNG--IPS-ACLSRLFLDNNELRD----------------TDSLIHLKNLEILSIRNNK-------  139 (263)
T ss_dssp             CCEEECCSS-CCSCCTT--CCC-SSCCEEECCSSCCSB----------------SGGGTTCTTCCEEECTTSC-------
T ss_pred             CCEEECCCC-ccCCcCc--ccc-CcccEEEccCCccCC----------------ChhhcCcccccEEECCCCc-------
Confidence            999999999 8999887  555 999999999987754                2357777777777665321       


Q ss_pred             ccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcC
Q 008415          358 LKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRK  435 (566)
Q Consensus       358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~  435 (566)
                                           ...  +..+..+++|+.|++++|.+..+          .....+++|+.|++++++.
T Consensus       140 ---------------------i~~--~~~l~~l~~L~~L~L~~N~i~~~----------~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          140 ---------------------LKS--IVMLGFLSKLEVLDLHGNEITNT----------GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ---------------------CCB--CGGGGGCTTCCEEECTTSCCCBC----------TTSTTCCCCCEEEEEEEEE
T ss_pred             ---------------------CCC--ChHHccCCCCCEEECCCCcCcch----------HHhccCCCCCEEeCCCCcc
Confidence                                 111  12466788999999999985543          2234689999999998653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=2.2e-13  Score=137.43  Aligned_cols=242  Identities=14%  Similarity=0.099  Sum_probs=113.7

Q ss_pred             CCccEEEecCCcccccch----HHHhcCc-cCCEEecCCCCCCccccccccccCcchhcc-----ccCcEecccCcccCC
Q 008415          221 PRLVTLLLGGNRIEEITD----GFFQSMS-TLRVLSLRINISLRKLPSGIRGLPQELKAL-----EKLRYLNLDYTRFLS  290 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~lp~----~~~~~l~-~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L-----~~L~~L~L~~~~~l~  290 (566)
                      ++|++|++++|.+...+.    ..+..++ +|++|+|++| .++....      ..+..+     ++|++|++++| .++
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~------~~l~~~l~~~~~~L~~L~Ls~n-~l~   93 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNS------DELVQILAAIPANVTSLNLSGN-FLS   93 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCH------HHHHHHHHTSCTTCCEEECCSS-CGG
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHH------HHHHHHHhccCCCccEEECcCC-cCC
Confidence            336666666666555543    3355555 5666666666 5554321      123333     56666666666 455


Q ss_pred             ccchhhh----cCC-CCCcEEEecCCCCcccccccccccccCccchHhhhcCC-CCCceEEEEEcCcc--chhccccCCc
Q 008415          291 IIPHQLI----SGF-SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS-KHLNVLSWTFRSSL--GVQNFLKYPK  362 (566)
Q Consensus       291 ~lP~~~i----~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~i~~~~~~--~~~~~~~~~~  362 (566)
                      ..+...+    ..+ ++|++|++++|.+...          ........+..+ ++|+.|+++.+...  ....+.....
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSK----------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGS----------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcH----------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            4433212    223 5666666666655431          000111223332 45666666544322  1111111111


Q ss_pred             cc-ccceEEEEecccCCCCCeeee----ccccc-cCcceEEEeccccceeeecccccccccCccC-CCcccEEecccCcC
Q 008415          363 LV-SITQSVLVKSGVHTSPPFNVL----HLAYM-ENLQKFELESCNLEEMKIDSTEEVKKLFQSG-FRSLNTVSVHYCRK  435 (566)
Q Consensus       363 ~~-~~L~~L~l~~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~  435 (566)
                      .. .+|+.|++++ +. .......    .+... ++|+.|++++|.+........  +  ..... .++|++|+|+++ .
T Consensus       164 ~~~~~L~~L~Ls~-n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l--~--~~l~~~~~~L~~L~Ls~N-~  236 (362)
T 3goz_A          164 AIPANVNSLNLRG-NN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL--A--YIFSSIPNHVVSLNLCLN-C  236 (362)
T ss_dssp             TSCTTCCEEECTT-SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH--H--HHHHHSCTTCCEEECCSS-C
T ss_pred             cCCccccEeeecC-CC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH--H--HHHhcCCCCceEEECcCC-C
Confidence            11 2566666665 32 1111111    13334 478888888877433111000  0  00011 357888888875 4


Q ss_pred             CCCCch------hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccc
Q 008415          436 AKDLTW------LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       436 l~~l~~------l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                      +.+.+.      +..+++|+.|++++|..- .+..... .    .++..+..+++|+.|++++.
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~-~i~~~~~-~----~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVK-NMSKEQC-K----ALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHT-TCCHHHH-H----HHHTTSTTCCEEEEECTTSC
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCcc-ccCHHHH-H----HHHHHhccCCceEEEecCCC
Confidence            544322      355788888888877511 1110000 0    01124556777888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.37  E-value=2.1e-13  Score=147.17  Aligned_cols=101  Identities=11%  Similarity=0.008  Sum_probs=55.3

Q ss_pred             CCCcccEEecccCcCCCC--Cchhhc-cCCcceEeEecccCcccccccccccccccccCCCCccccccceeecccccccc
Q 008415          421 GFRSLNTVSVHYCRKAKD--LTWLVF-VQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK  497 (566)
Q Consensus       421 ~l~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~  497 (566)
                      .+++|++|+|++  .+.+  ++.++. +++|+.|+|++|........            .-...+++|+.|+|++|+. .
T Consensus       430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------------~l~~~~~~L~~L~L~~n~~-~  494 (594)
T 2p1m_B          430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------------HVLSGCDSLRKLEIRDCPF-G  494 (594)
T ss_dssp             HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------------HHHHHCTTCCEEEEESCSC-C
T ss_pred             hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------------HHHhcCCCcCEEECcCCCC-c
Confidence            345666666644  2222  222333 66677777766653111110            1124588999999998874 3


Q ss_pred             ccC--CCCCCCCCccEEeecCCCCCCCCCCCCccc---cCCcEEEec
Q 008415          498 SVY--PNPLPFPKLKKIDVCHCPQLKKLPLNSSSA---KERRVVIEG  539 (566)
Q Consensus       498 ~l~--~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~---l~~L~i~~~  539 (566)
                      ...  .....+++|+.|++++|+.   .+.+...+   ++.+.+..+
T Consensus       495 ~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l~~~lp~l~i~~~  538 (594)
T 2p1m_B          495 DKALLANASKLETMRSLWMSSCSV---SFGACKLLGQKMPKLNVEVI  538 (594)
T ss_dssp             HHHHHHTGGGGGGSSEEEEESSCC---BHHHHHHHHHHCTTEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEeeeCCCC---CHHHHHHHHHhCCCCEEEEe
Confidence            211  1224478999999999975   23332222   466666443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.37  E-value=1.9e-13  Score=147.59  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=52.9

Q ss_pred             ccccEEEeecCCcccc--cCCC-CCCCccEEEecCC-cccc--cchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          199 EGAKRVSLMGNGIRSL--SEIP-TCPRLVTLLLGGN-RIEE--ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l--~~~~-~~~~Lr~L~l~~~-~l~~--lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      .++++|.+.++.+...  ..+. .+++|++|++.+| .+..  ++. ++.++++|++|++++| .++....  ..++.-.
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~i~~~~~--~~l~~~~  180 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRES-DVDDVSG--HWLSHFP  180 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTC-EEECCCG--GGGGGSC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCC-ccCCcch--HHHHHHh
Confidence            4666666666654431  1111 4567777777666 3332  222 2446667777777766 4443211  1122222


Q ss_pred             hccccCcEecccCcccCCccchh----hhcCCCCCcEEEecCC
Q 008415          273 KALEKLRYLNLDYTRFLSIIPHQ----LISGFSKLEVLRLFGC  311 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~~----~i~~L~~L~~L~l~~~  311 (566)
                      ..+++|++|++++|.  ..++..    .+.++++|++|++.+|
T Consensus       181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            345566666666652  222211    1233466666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.35  E-value=2.8e-13  Score=136.69  Aligned_cols=263  Identities=14%  Similarity=0.072  Sum_probs=167.0

Q ss_pred             EEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc-cCcEecccCcccCCccchhhhcCC----
Q 008415          226 LLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE-KLRYLNLDYTRFLSIIPHQLISGF----  300 (566)
Q Consensus       226 L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~-~L~~L~L~~~~~l~~lP~~~i~~L----  300 (566)
                      +.++.+.+....+.++...++|++|+|++| .++..+.  ..+-..+.+++ +|++|++++| .++......+..+    
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSIST--VELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCH--HHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTS
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHH--HHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhcc
Confidence            567777777665665777777999999999 8987664  11224467888 9999999999 7887654336664    


Q ss_pred             -CCCcEEEecCCCCcccccccccccccCccchHhhhcCC-CCCceEEEEEcCccchh--ccccCCcc-cccceEEEEecc
Q 008415          301 -SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS-KHLNVLSWTFRSSLGVQ--NFLKYPKL-VSITQSVLVKSG  375 (566)
Q Consensus       301 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~i~~~~~~~~~--~~~~~~~~-~~~L~~L~l~~~  375 (566)
                       ++|++|++++|.+...          ........+..+ ++|+.|+++.+......  .+...... ..+|+.|++++ 
T Consensus        79 ~~~L~~L~Ls~n~l~~~----------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-  147 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYK----------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-  147 (362)
T ss_dssp             CTTCCEEECCSSCGGGS----------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-
T ss_pred             CCCccEEECcCCcCChH----------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-
Confidence             9999999999987641          011122235566 89999999976543221  12111111 35899999997 


Q ss_pred             cCCCCCeeee----cccccc-CcceEEEeccccceeeecccccccccCccCC-CcccEEecccCcCCCC-----Cch-hh
Q 008415          376 VHTSPPFNVL----HLAYME-NLQKFELESCNLEEMKIDSTEEVKKLFQSGF-RSLNTVSVHYCRKAKD-----LTW-LV  443 (566)
Q Consensus       376 ~~~~~~~~~~----~l~~~~-~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~-----l~~-l~  443 (566)
                      +. .......    .+...+ +|++|++++|.+.........    .....+ ++|+.|+|+++. +.+     ++. +.
T Consensus       148 N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~  221 (362)
T 3goz_A          148 ND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA----KFLASIPASVTSLDLSANL-LGLKSYAELAYIFS  221 (362)
T ss_dssp             SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH
T ss_pred             Cc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH----HHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHh
Confidence            42 1111111    233444 999999999984432211000    001234 599999999974 554     332 44


Q ss_pred             c-cCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccc-------cccccCCCCCCCCCccEEeec
Q 008415          444 F-VQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT-------NLKSVYPNPLPFPKLKKIDVC  515 (566)
Q Consensus       444 ~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~-------~L~~l~~~~~~~p~L~~L~i~  515 (566)
                      . .++|++|+|++|..-. .+...        +......+++|+.|+++++.       .+..+......+++|+.|+++
T Consensus       222 ~~~~~L~~L~Ls~N~l~~-~~~~~--------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~  292 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHG-PSLEN--------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN  292 (362)
T ss_dssp             HSCTTCCEEECCSSCCCC-CCHHH--------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred             cCCCCceEEECcCCCCCc-HHHHH--------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence            4 3599999999985332 21100        11234678899999999875       133344445567889999998


Q ss_pred             CCC
Q 008415          516 HCP  518 (566)
Q Consensus       516 ~C~  518 (566)
                      +++
T Consensus       293 ~N~  295 (362)
T 3goz_A          293 GKE  295 (362)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            853

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.3e-12  Score=117.27  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=108.3

Q ss_pred             ccccccccEEEeecCCcccccCCCCCC-CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchh
Q 008415          195 FEEWEGAKRVSLMGNGIRSLSEIPTCP-RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELK  273 (566)
Q Consensus       195 ~~~~~~lr~Lsl~~~~~~~l~~~~~~~-~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~  273 (566)
                      .....+++.|.+.+|.+..++.+..+. +|++|++++|.+..++ . ++.+++|++|++++| .++.+|..+      ++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~------~~   85 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGL------DQ   85 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCH------HH
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcch------hh
Confidence            334568999999999999887776665 9999999999988873 3 889999999999999 998877554      58


Q ss_pred             ccccCcEecccCcccCCccch--hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          274 ALEKLRYLNLDYTRFLSIIPH--QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       274 ~L~~L~~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      .+++|++|++++| .++.+|.  . ++.+++|++|++.+|.+...           .......+..+++|+.|+++.+.
T Consensus        86 ~l~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~i~~~-----------~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           86 ALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNPVTNK-----------KHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSGGGGS-----------TTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCCCCCc-----------HhHHHHHHHHCCccceeCCCcCC
Confidence            9999999999999 8899987  5 88999999999999987541           11112247788889988888654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=6.9e-12  Score=126.35  Aligned_cols=176  Identities=18%  Similarity=0.148  Sum_probs=137.3

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHh-cCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQ-SMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~-~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      +.+.+.++++..+|.. -.+.++.|++++|.+..++...+. ++++|++|+|++| .++.+|..      .+.++++|++
T Consensus        21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~------~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE------AFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT------TTTTCTTCCE
T ss_pred             CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChh------hccCCCCCCE
Confidence            5788888888888753 346799999999999999887676 8999999999999 99887754      3799999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccc-c
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFL-K  359 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~-~  359 (566)
                      |+|++| .++.+|.+.+..+++|++|++++|.+..              .....+..+++|+.|+++.+....++... .
T Consensus        93 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  157 (361)
T 2xot_A           93 LDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVV--------------VDRNAFEDMAQLQKLYLSQNQISRFPVELIK  157 (361)
T ss_dssp             EECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE--------------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred             EECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccE--------------ECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence            999999 8999988768999999999999998865              34567889999999999987766654422 1


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccC--cceEEEeccc
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMEN--LQKFELESCN  402 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~  402 (566)
                      ....+.+|+.|++++  +....+....+..++.  ++.|++.+|.
T Consensus       158 ~~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          158 DGNKLPKLMLLDLSS--NKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ----CTTCCEEECCS--SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CcccCCcCCEEECCC--CCCCccCHHHhhhccHhhcceEEecCCC
Confidence            113347899999997  2233333334555665  4889999877

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=4.1e-12  Score=113.02  Aligned_cols=131  Identities=18%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             ccccEEEeecCCcc--cccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          199 EGAKRVSLMGNGIR--SLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      .++++|.+.+|.+.  .+|.. ..+++|++|++++|.+..+ .. ++.+++|++|++++| .++..      +|..++++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~------~~~~~~~l   94 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSEN-RIFGG------LDMLAEKL   94 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESC-CCCSC------CCHHHHHC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCC-cCchH------HHHHHhhC
Confidence            57899999999887  67654 7788999999999988877 33 788999999999999 88752      23346779


Q ss_pred             ccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          276 EKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      ++|++|++++| .++.+|. ..+..+++|++|++++|.+...           .......+..+++|+.|++..+.
T Consensus        95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-----------~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL-----------NDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS-----------TTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch-----------HHHHHHHHHhCccCcEecCCCCC
Confidence            99999999999 7888873 2388999999999998877541           11112467888888888888654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=9.7e-12  Score=113.26  Aligned_cols=124  Identities=21%  Similarity=0.280  Sum_probs=89.5

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      +.+.+.++.+..+|.. -.++|++|++++|.+..+|.. |..+++|++|+|++| .++.++...      +.++++|++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~------f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQS------FSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCEE
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhH------ccCCCCCCEE
Confidence            4566677777777643 236788888888888888755 788888888888888 787766433      6788888888


Q ss_pred             cccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          282 NLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       282 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      ++++| .++.+|.+.+..+++|++|++.+|.+..              .....+..+++|+.|++..+
T Consensus        84 ~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           84 ILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISV--------------VPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             ECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCe--------------eChhhhhcCccccEEEeCCC
Confidence            88888 7888776557888888888888877654              22234566777777777643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.29  E-value=2.4e-11  Score=128.80  Aligned_cols=185  Identities=17%  Similarity=0.147  Sum_probs=125.6

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      +++.|++.++.+..+|... +++|++|++++|.+..+|    ..+++|++|++++| .++.+|. +       .+  +|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l-------~~--~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-L-------PA--SLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-C-------CT--TCC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-h-------hc--CCC
Confidence            7888999998888877633 478999999999888888    34788999999999 8887765 3       33  899


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| .++.+|.    .+++|++|++++|.+..               .+.   .+++|+.|+++.+...       
T Consensus       124 ~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~---------------lp~---~l~~L~~L~Ls~N~L~-------  173 (571)
T 3cvr_A          124 HLDVDNN-QLTMLPE----LPALLEYINADNNQLTM---------------LPE---LPTSLEVLSVRNNQLT-------  173 (571)
T ss_dssp             EEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC---------------CCC---CCTTCCEEECCSSCCS-------
T ss_pred             EEECCCC-cCCCCCC----cCccccEEeCCCCccCc---------------CCC---cCCCcCEEECCCCCCC-------
Confidence            9999999 7888887    57899999999887654               111   3455666665533211       


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                                           .+  +.+.  ++|+.|++++|.+..+|. ..   ... ....+.|+.|+|+++ .++.+
T Consensus       174 ---------------------~l--p~l~--~~L~~L~Ls~N~L~~lp~-~~---~~L-~~~~~~L~~L~Ls~N-~l~~l  222 (571)
T 3cvr_A          174 ---------------------FL--PELP--ESLEALDVSTNLLESLPA-VP---VRN-HHSEETEIFFRCREN-RITHI  222 (571)
T ss_dssp             ---------------------CC--CCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSS-CCCCC
T ss_pred             ---------------------Cc--chhh--CCCCEEECcCCCCCchhh-HH---Hhh-hcccccceEEecCCC-cceec
Confidence                                 11  1122  677888887777544432 00   000 001122388888885 56677


Q ss_pred             ch-hhccCCcceEeEecccCccc
Q 008415          440 TW-LVFVQNLKVLRIGDCYDMEE  461 (566)
Q Consensus       440 ~~-l~~l~~L~~L~L~~~~~l~~  461 (566)
                      |. +..+++|+.|+|++|+....
T Consensus       223 p~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          223 PENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CGGGGGSCTTEEEECCSSSCCHH
T ss_pred             CHHHhcCCCCCEEEeeCCcCCCc
Confidence            66 77789999999988865443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=1.4e-11  Score=112.15  Aligned_cols=126  Identities=25%  Similarity=0.333  Sum_probs=108.3

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      ..+...+..+..+|.. -..+++.|.+.+|.+..+| .+..+++|++|++++|.+..++...|.++++|++|+|++| .+
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence            3455666677777743 2368999999999999886 5678999999999999999998877999999999999999 99


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +.+|..      .+..+++|++|++++| .++.+|.+++..+++|++|++.+|...
T Consensus        91 ~~i~~~------~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPR------TFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTT------TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHH------HhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence            987754      3799999999999999 899999877899999999999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=2.1e-11  Score=109.44  Aligned_cols=108  Identities=29%  Similarity=0.491  Sum_probs=64.5

Q ss_pred             ccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          199 EGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .++++|.+.+|.+..++.  +..+++|++|++++|.+..+|...++.+++|++|++++| .++.+|...      +++++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~------~~~l~  100 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGV------FDKLT  100 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTCT
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHH------hhCCc
Confidence            456666666666655543  345666666666666666665554566666666666666 665555432      45666


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +|++|++++| .++.+|.+++..+++|++|++.+|...
T Consensus       101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            6666666666 566666553455666666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=1.7e-11  Score=110.06  Aligned_cols=127  Identities=20%  Similarity=0.277  Sum_probs=106.0

Q ss_pred             ccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      .+.+.+.++++..+|. ...++|++|++++|.+..++...++.+++|++|++++| .++.+|...      ++++++|++
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV------FDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCCE
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhH------ccCCCccCE
Confidence            4677888888888874 34579999999999999998877899999999999999 998877654      789999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      |++++| .++.+|...+..+++|++|++.+|.+..              .....+..+++|+.|+++.+.
T Consensus        81 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------------~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           81 LYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKS--------------VPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--------------CCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCC-CccccCHHHhhCCcccCEEECcCCcceE--------------eCHHHhcCCcccCEEEecCCC
Confidence            999999 8999998767899999999999998764              223345778889988887543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=5.3e-12  Score=109.90  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=99.6

Q ss_pred             ccccEEEeecCCcc--cccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          199 EGAKRVSLMGNGIR--SLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      .+++++.+.++.+.  .++.. ..+++|++|++++|.+..+ .. ++.+++|++|++++| .++..      +|..++++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~------~~~~~~~l   87 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGG------LEVLAEKC   87 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSC------THHHHHHC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccch------HHHHhhhC
Confidence            68999999999988  66654 7889999999999988887 33 889999999999999 88752      33346789


Q ss_pred             ccCcEecccCcccCCccc--hhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEE
Q 008415          276 EKLRYLNLDYTRFLSIIP--HQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSW  346 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i  346 (566)
                      ++|++|++++| .++.+|  .. ++.+++|++|++++|.+...           .......++.+++|+.|++
T Consensus        88 ~~L~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~-----------~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           88 PNLTHLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNL-----------NDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTCCEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGS-----------TTHHHHHHHHCTTCCEETT
T ss_pred             CCCCEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccch-----------HHHHHHHHHHCCCcccccC
Confidence            99999999999 788876  44 89999999999999977541           1111245677778877654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=3e-11  Score=128.03  Aligned_cols=176  Identities=15%  Similarity=0.144  Sum_probs=120.4

Q ss_pred             CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCC
Q 008415          221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGF  300 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L  300 (566)
                      .+|++|++++|.+..+|..+   +++|++|+|++| .++.+|          +.+++|++|++++| .++.+|.  +.+ 
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip----------~~l~~L~~L~Ls~N-~l~~ip~--l~~-  120 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP----------ELPASLEYLDACDN-RLSTLPE--LPA-  120 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCCCC--CCT-
T ss_pred             CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc----------cccCCCCEEEccCC-CCCCcch--hhc-
Confidence            37888888888888888763   377888888888 777655          23578888888888 7888887  554 


Q ss_pred             CCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCC
Q 008415          301 SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSP  380 (566)
Q Consensus       301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  380 (566)
                       +|++|++++|.+..               .+.   .+++|+.|+++                          + +. ..
T Consensus       121 -~L~~L~Ls~N~l~~---------------lp~---~l~~L~~L~Ls--------------------------~-N~-l~  153 (571)
T 3cvr_A          121 -SLKHLDVDNNQLTM---------------LPE---LPALLEYINAD--------------------------N-NQ-LT  153 (571)
T ss_dssp             -TCCEEECCSSCCSC---------------CCC---CCTTCCEEECC--------------------------S-SC-CS
T ss_pred             -CCCEEECCCCcCCC---------------CCC---cCccccEEeCC--------------------------C-Cc-cC
Confidence             88888888876643               111   34555555554                          3 11 11


Q ss_pred             CeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCc-------ceEeE
Q 008415          381 PFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNL-------KVLRI  453 (566)
Q Consensus       381 ~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L-------~~L~L  453 (566)
                      .  ++.  .+++|+.|++++|.+..++.          ..  ++|+.|+|+++ .++.+|.+..  +|       +.|++
T Consensus       154 ~--lp~--~l~~L~~L~Ls~N~L~~lp~----------l~--~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~L  214 (571)
T 3cvr_A          154 M--LPE--LPTSLEVLSVRNNQLTFLPE----------LP--ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRC  214 (571)
T ss_dssp             C--CCC--CCTTCCEEECCSSCCSCCCC----------CC--TTCCEEECCSS-CCSSCCCCC----------CCEEEEC
T ss_pred             c--CCC--cCCCcCEEECCCCCCCCcch----------hh--CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEec
Confidence            1  111  45789999999998554431          11  89999999986 6777776433  77       99999


Q ss_pred             ecccCcccccccccccccccccCCCCccccccceeeccccc
Q 008415          454 GDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGT  494 (566)
Q Consensus       454 ~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~  494 (566)
                      ++|. ++.+             |..+..+++|+.|+|++++
T Consensus       215 s~N~-l~~l-------------p~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          215 RENR-ITHI-------------PENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CSSC-CCCC-------------CGGGGGSCTTEEEECCSSS
T ss_pred             CCCc-ceec-------------CHHHhcCCCCCEEEeeCCc
Confidence            9875 3433             3456679999999999865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.25  E-value=1.7e-11  Score=109.97  Aligned_cols=128  Identities=27%  Similarity=0.276  Sum_probs=108.0

Q ss_pred             EEEecCCccccCCCccccc-cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCc
Q 008415          181 FLVHAGVELTEAPKFEEWE-GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~-~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      .+...+..+..++...... +++.|++++|.+..++.+..+++|++|++++|.+..+|..+++.+++|++|++++| .++
T Consensus        23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~  101 (176)
T 1a9n_A           23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLV  101 (176)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCC
T ss_pred             EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCC
Confidence            3455555666666655555 99999999999999988899999999999999999999876799999999999999 998


Q ss_pred             cccccccccCcchhccccCcEecccCcccCCccchh---hhcCCCCCcEEEecCCCCcc
Q 008415          260 KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ---LISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       260 ~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~---~i~~L~~L~~L~l~~~~~~~  315 (566)
                      .+|.-     ..++.+++|++|++++| .+..+|..   +++.+++|++|++.++....
T Consensus       102 ~~~~~-----~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          102 ELGDL-----DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CGGGG-----GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cchhh-----HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            77650     13689999999999999 78888874   58999999999999887643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=2.6e-11  Score=110.34  Aligned_cols=106  Identities=24%  Similarity=0.318  Sum_probs=54.5

Q ss_pred             cccEEEeecCCcccccC---CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          200 GAKRVSLMGNGIRSLSE---IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .++.|.+.+|.+..++.   +..+++|++|++++|.+..++...|+.+++|++|+|++| .++.+|...      +++++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~  102 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKM------FLGLH  102 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSS------STTCT
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHH------hcCCC
Confidence            55555555555555442   345555555555555555543333555555555555555 555444322      45555


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      +|++|++++| .++.++...+..+++|++|++.+|..
T Consensus       103 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          103 QLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            5555555555 45444322255555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.23  E-value=6.2e-11  Score=105.34  Aligned_cols=128  Identities=24%  Similarity=0.262  Sum_probs=105.4

Q ss_pred             EEEecCCccc--cCCCc-cccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          181 FLVHAGVELT--EAPKF-EEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       181 ~~~~~~~~~~--~~~~~-~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      .+...+..+.  .+|.. ..+.+++.|++.+|.+..++.+..+++|++|++++|.+...++..++.+++|++|++++| .
T Consensus        28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~  106 (168)
T 2ell_A           28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-K  106 (168)
T ss_dssp             EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-S
T ss_pred             EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-c
Confidence            3444555555  55554 667899999999999998888899999999999999998834444888999999999999 9


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccch---hhhcCCCCCcEEEecCCCCcc
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++.+|.     +..++.+++|++|++++| .++.+|.   ..+..+++|++|++.+|....
T Consensus       107 l~~~~~-----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          107 LKDIST-----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCSSGG-----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             cCcchh-----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            987763     134689999999999999 8888887   449999999999999987754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.23  E-value=2.5e-11  Score=110.48  Aligned_cols=125  Identities=19%  Similarity=0.307  Sum_probs=104.0

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchH-HHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDG-FFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~-~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      ++++++++.+..+|... ..+|++|++++|.+..++.. +++.+++|++|+|++| .++.++      |..++++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~------~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIE------PNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC------TTTTTTCTTCCE
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcC------HhHcCCcccCCE
Confidence            67888889988888632 34999999999999888763 5899999999999999 998664      344799999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      |++++| .++.+|...+..+++|++|++++|.+..              ..+..+..+++|+.|+++.+
T Consensus        83 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           83 LQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISC--------------VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCE--------------ECTTSSTTCTTCCEEECTTC
T ss_pred             EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCe--------------eCHHHhhcCCCCCEEEeCCC
Confidence            999999 8999887668999999999999998865              34566778888888887743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=4.2e-11  Score=107.03  Aligned_cols=106  Identities=22%  Similarity=0.330  Sum_probs=92.1

Q ss_pred             ccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          201 AKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       201 lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      .+.+.+.++.+..+|... .++|++|++++|.+..++...|+++++|++|+|++| .++.+|..+      ++++++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~------~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGV------FDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhH------hCCcchhhE
Confidence            357888888888888633 389999999999999887666899999999999999 998888654      689999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      |+|++| .++.+|.+.+..+++|++|++.+|....
T Consensus        86 L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           86 LDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             EECCCC-ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999999 8999998768999999999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=4.6e-11  Score=106.37  Aligned_cols=107  Identities=24%  Similarity=0.346  Sum_probs=92.5

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..+.+++.++.+..+|... .++|++|++++|.+..++...|+++++|++|+|++| .++.+|...      +.++++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~------f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGV------FDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCC
T ss_pred             CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhh------ccCCCCCC
Confidence            3467888889998888543 489999999999999987666899999999999999 998888654      78999999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      +|+|++| .++.+|.+++..+++|++|++.+|...-
T Consensus        82 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           82 QLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             EEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9999999 8999998768999999999999987753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=3e-11  Score=128.61  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCC
Q 008415          222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFS  301 (566)
Q Consensus       222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~  301 (566)
                      .|++|++++|.+..+|.  ++.+++|++|+|++| .++.+|..       +++|++|++|+|++| .++.+| + ++.++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~-------~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~  508 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPA-------LAALRCLEVLQASDN-ALENVD-G-VANLP  508 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGG-------GGGCTTCCEEECCSS-CCCCCG-G-GTTCS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchh-------hhcCCCCCEEECCCC-CCCCCc-c-cCCCC
Confidence            35666666666655554  556666666666666 55544432       356666666666666 566665 3 66666


Q ss_pred             CCcEEEecCCCCcccccccccccccCccch-HhhhcCCCCCceEEEEEcCccc
Q 008415          302 KLEVLRLFGCGFWVVTEEEGNVLCEDAEPL-MKELLGSKHLNVLSWTFRSSLG  353 (566)
Q Consensus       302 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~i~~~~~~~  353 (566)
                      +|++|++++|.+..              .. +..++.+++|+.|+++.+....
T Consensus       509 ~L~~L~Ls~N~l~~--------------~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          509 RLQELLLCNNRLQQ--------------SAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SCCEEECCSSCCCS--------------SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCcEEECCCCCCCC--------------CCCcHHHhcCCCCCEEEecCCcCCC
Confidence            66666666665543              11 4555566666666666544433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=1.1e-10  Score=101.50  Aligned_cols=120  Identities=23%  Similarity=0.316  Sum_probs=98.9

Q ss_pred             EEecCCccc--cCCC-ccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCC
Q 008415          182 LVHAGVELT--EAPK-FEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       182 ~~~~~~~~~--~~~~-~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      +...+..+.  .+|. ...+.+++.|++.+|.+..++.+..+++|++|++++|.+.. +|. .++.+++|++|++++| .
T Consensus        22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ls~N-~   99 (149)
T 2je0_A           22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLNLSGN-K   99 (149)
T ss_dssp             EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEECTTS-C
T ss_pred             EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEECCCC-c
Confidence            444454554  4444 35678999999999999988888999999999999999988 555 4888999999999999 8


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccch---hhhcCCCCCcEEEec
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH---QLISGFSKLEVLRLF  309 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~---~~i~~L~~L~~L~l~  309 (566)
                      ++.+|.     |..++.+++|++|++++| .++.+|.   ..++.+++|++|+++
T Consensus       100 i~~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          100 IKDLST-----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCSHHH-----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCChHH-----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            987542     244799999999999999 8888886   458999999999886

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.04  E-value=5.1e-11  Score=130.20  Aligned_cols=130  Identities=12%  Similarity=0.070  Sum_probs=97.8

Q ss_pred             hhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccccC-cchhhHHHHHHHHHHhhHHHhh
Q 008415           14 FDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKVEIEE--QRPRTRRT-NQVAGWLEDVQKLETEYTELER   90 (566)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~~la~--~~g~l~~~-~~~~~W~~~~~~l~~~~~~~~~   90 (566)
                      .+++|++|+++...  .              ..++..+|++++|+|+  +|+.++.+ .+.++|+.+-..--..+.+++|
T Consensus       300 ~eEA~eLF~~~~g~--~--------------~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSY  363 (1221)
T 1vt4_I          300 PDEVKSLLLKYLDC--R--------------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL  363 (1221)
T ss_dssp             HHHHHHHHHHHHCC--C--------------TTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC--C--------------HHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHH
Confidence            47899999876311  1              0223345688999884  45666655 3688898752111124567888


Q ss_pred             hchHHHH-HHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccccHhHHHHHHHHccccccc-CCcceecchhHHH
Q 008415           91 DRAQEMD-RLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQACLLEEE-GDDHVKMHDMIRE  165 (566)
Q Consensus        91 ~~L~~~l-K~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~ll~~~-~~~~~~mHdli~d  165 (566)
                      +.||++. |+|| +||    |+||+   |+++.++.+|+++|.    ..++.++++|+++|||+.. ....|+|||++++
T Consensus       364 d~Lp~eelK~cF-L~L----AIFPed~~I~~elLa~LW~aeGe----edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllE  434 (1221)
T 1vt4_I          364 NVLEPAEYRKMF-DRL----SVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE  434 (1221)
T ss_dssp             HHSCTTHHHHHH-HHT----TSSCTTSCEEHHHHHHHHCSSCS----HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred             HhCCHHHHHHHH-HHH----hCCCCCCCCCHHHHHHHhcCCCH----HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHH
Confidence            9999999 9999 999    99998   889999999999981    2289999999999999986 4568999999999


Q ss_pred             HHH
Q 008415          166 MSL  168 (566)
Q Consensus       166 l~~  168 (566)
                      ++.
T Consensus       435 Lr~  437 (1221)
T 1vt4_I          435 LKV  437 (1221)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.04  E-value=3.2e-10  Score=120.65  Aligned_cols=151  Identities=13%  Similarity=0.063  Sum_probs=103.0

Q ss_pred             CCCCCccEEE-ecCCcccccchHH-----Hhc--CccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccC
Q 008415          218 PTCPRLVTLL-LGGNRIEEITDGF-----FQS--MSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFL  289 (566)
Q Consensus       218 ~~~~~Lr~L~-l~~~~l~~lp~~~-----~~~--l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l  289 (566)
                      ..+++|+.|+ +..+.+..++.-.     +..  ...|++|+|++| .++.+|.        ++++++|++|++++| .+
T Consensus       406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~--------~~~l~~L~~L~Ls~N-~l  475 (567)
T 1dce_A          406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--------LEQLLLVTHLDLSHN-RL  475 (567)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC--------GGGGTTCCEEECCSS-CC
T ss_pred             HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC--------ccccccCcEeecCcc-cc
Confidence            4567788887 5555433333211     111  125999999999 8877664        589999999999999 89


Q ss_pred             CccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceE
Q 008415          290 SIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQS  369 (566)
Q Consensus       290 ~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~  369 (566)
                      +.+|.. ++.+++|++|++++|.+..               .+ .++.+++|+.|+++.+....+. .+.....+++|+.
T Consensus       476 ~~lp~~-~~~l~~L~~L~Ls~N~l~~---------------lp-~l~~l~~L~~L~Ls~N~l~~~~-~p~~l~~l~~L~~  537 (567)
T 1dce_A          476 RALPPA-LAALRCLEVLQASDNALEN---------------VD-GVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVL  537 (567)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSSCCCC---------------CG-GGTTCSSCCEEECCSSCCCSSS-TTGGGGGCTTCCE
T ss_pred             cccchh-hhcCCCCCEEECCCCCCCC---------------Cc-ccCCCCCCcEEECCCCCCCCCC-CcHHHhcCCCCCE
Confidence            999987 9999999999999998754               22 7889999999999876544331 0233444578999


Q ss_pred             EEEecccCCCCCeee--e-ccccccCcceEEE
Q 008415          370 VLVKSGVHTSPPFNV--L-HLAYMENLQKFEL  398 (566)
Q Consensus       370 L~l~~~~~~~~~~~~--~-~l~~~~~L~~L~l  398 (566)
                      |++++ .. ......  . .+..+++|+.|++
T Consensus       538 L~L~~-N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          538 LNLQG-NS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECTT-SG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEecC-Cc-CCCCccHHHHHHHHCcccCccCC
Confidence            99987 32 111110  0 1234688888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=2.7e-10  Score=125.10  Aligned_cols=109  Identities=25%  Similarity=0.328  Sum_probs=94.1

Q ss_pred             cccccccEEEeecCCccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          196 EEWEGAKRVSLMGNGIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       196 ~~~~~lr~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      .....++.|++.+|.+..++ ....+++|++|+|++|.+..+|.. |+++++|++|+|++| .++.+|.+       +++
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~-------~~~  291 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAE-------LGS  291 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSS-------GGG
T ss_pred             ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChh-------hcC
Confidence            34568999999999988876 346889999999999999999987 799999999999999 88766654       589


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      |++|++|+|++| .++.+|.+ |+.|++|++|++++|.+..
T Consensus       292 l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          292 CFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence            999999999999 89999988 9999999999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=2e-10  Score=126.05  Aligned_cols=109  Identities=24%  Similarity=0.190  Sum_probs=94.6

Q ss_pred             CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415          217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL  296 (566)
Q Consensus       217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~  296 (566)
                      +..+++|++|++++|.+..+|.. +.++++|++|+|++| .++.+|..       +++|++|++|+|++| .++.+|.. 
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~-------~~~l~~L~~L~Ls~N-~l~~lp~~-  288 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAE-------IKNLSNLRVLDLSHN-RLTSLPAE-  288 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGG-------GGGGTTCCEEECTTS-CCSSCCSS-
T ss_pred             hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChh-------hhCCCCCCEEeCcCC-cCCccChh-
Confidence            56789999999999999999988 568999999999999 88766654       699999999999999 79999998 


Q ss_pred             hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCc
Q 008415          297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSS  351 (566)
Q Consensus       297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~  351 (566)
                      ++.|++|++|++++|.+..               .+..++.|++|+.|+++.+..
T Consensus       289 ~~~l~~L~~L~L~~N~l~~---------------lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTT---------------LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCC---------------CCSSTTSCTTCCCEECTTSCC
T ss_pred             hcCCCCCCEEECCCCCCCc---------------cChhhhcCCCccEEeCCCCcc
Confidence            9999999999999997754               455689999999999987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.02  E-value=6.3e-11  Score=139.01  Aligned_cols=137  Identities=11%  Similarity=0.071  Sum_probs=105.5

Q ss_pred             hhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHHHH----
Q 008415           13 LFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKLET----   83 (566)
Q Consensus        13 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l~~----   83 (566)
                      -.+++|++|...++...   +          ++.+++++|+++|   |+|+  .|+.++.+.  .+|...++.+..    
T Consensus       287 ~~~~a~~l~~~~~~~~~---~----------~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~  351 (1249)
T 3sfz_A          287 GREKGLEILSLFVNMKK---E----------DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFK  351 (1249)
T ss_dssp             CHHHHHHHHHHHHTSCS---T----------TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCC
T ss_pred             CHHHHHHHHHHhhCCCh---h----------hCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhh
Confidence            35788888887764321   1          2345577788888   8884  456565443  579999888754    


Q ss_pred             --------------hhHHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccccHhHHHHHHHHc
Q 008415           84 --------------EYTELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQA  146 (566)
Q Consensus        84 --------------~~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r  146 (566)
                                    .+++++|+.||++.|.|| +||    |+||+   |+++.++.+|.+++     ..++.++++|+++
T Consensus       352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~-~~l----~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~  421 (1249)
T 3sfz_A          352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYY-TDL----SILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNK  421 (1249)
T ss_dssp             CSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHH-HHG----GGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHT
T ss_pred             hcccccccchHHHHHHHHHHHHhCCHHHHHHH-HHh----CccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhc
Confidence                          234677889999999999 999    99998   99999999997653     1289999999999


Q ss_pred             ccccccCC---cceecchhHHHHHHHHhccc
Q 008415          147 CLLEEEGD---DHVKMHDMIREMSLWIACTV  174 (566)
Q Consensus       147 ~ll~~~~~---~~~~mHdli~dl~~~i~~~e  174 (566)
                      ||++....   ..|+|||++|++++..+.++
T Consensus       422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             cceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            99998633   35999999999999987665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=2e-11  Score=111.76  Aligned_cols=104  Identities=26%  Similarity=0.309  Sum_probs=51.6

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccC
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKL  278 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L  278 (566)
                      .+++.|++.+|.+..++.+..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|        .++++++|
T Consensus        48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~--------~~~~l~~L  117 (198)
T 1ds9_A           48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS--------GIEKLVNL  117 (198)
T ss_dssp             TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH--------HHHHHHHS
T ss_pred             CCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC--------ccccCCCC
Confidence            44555555555555544444455555555555555555443 444455555555555 444333        13455555


Q ss_pred             cEecccCcccCCccch-hhhcCCCCCcEEEecCCCC
Q 008415          279 RYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       279 ~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~  313 (566)
                      ++|++++| .++.+|. ..+..+++|++|++.+|..
T Consensus       118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            55555555 4554443 1245555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=2.3e-09  Score=106.29  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=56.2

Q ss_pred             ccccccEEEeecCCc-ccccCCCC-CCCccEEEecCCccc--ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          197 EWEGAKRVSLMGNGI-RSLSEIPT-CPRLVTLLLGGNRIE--EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~-~~l~~~~~-~~~Lr~L~l~~~~l~--~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      .+.++++|.+.++-- .++..+.. +++|++|++++|.+.  ..+.   +.++.++++.+..+    .+|+..      +
T Consensus        23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~a------F   89 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYA------F   89 (329)
T ss_dssp             HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTT------T
T ss_pred             hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHH------h
Confidence            345778888775311 11111122 788888888888776  2222   12233444444443    233322      3


Q ss_pred             hc--------cccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          273 KA--------LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       273 ~~--------L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      .+        +.+|+.|++.+  .++.++.+++..+++|+.|++..+..
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i  136 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTA  136 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred             cccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCc
Confidence            44        66677777766  36666666666677777777766554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.95  E-value=1.3e-09  Score=96.97  Aligned_cols=103  Identities=22%  Similarity=0.246  Sum_probs=87.6

Q ss_pred             CccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCC
Q 008415          222 RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFS  301 (566)
Q Consensus       222 ~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~  301 (566)
                      ..++++++++.+..+|..+   .++|++|+|++| .++.++..      .++++++|++|++++| .++.+|.+++..++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPG------VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLT   78 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTT------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCT
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChh------hhcCcccCCEEECCCC-CcCccChhhccCCC
Confidence            4678999999999999763   489999999999 99887543      3799999999999999 89999988679999


Q ss_pred             CCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          302 KLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       302 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      +|++|++++|.+..              .....+..+++|+.|+++.+
T Consensus        79 ~L~~L~L~~N~l~~--------------~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           79 QLTQLSLNDNQLKS--------------IPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TCCEEECCSSCCCC--------------CCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCccCE--------------eCHHHhcCCCCCCEEEeCCC
Confidence            99999999998865              23345788899999998865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.91  E-value=5.8e-09  Score=93.01  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=90.3

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      ..+...+..+..+|... ..++++|++.+|.+..++.  +..+++|+.|++++|.+..+|...|.++++|++|+|++| .
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-H   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-c
Confidence            44566666677777532 3789999999999998853  688999999999999999999887899999999999999 9


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~  295 (566)
                      ++.+|...      ++++++|++|++++| .+...|.+
T Consensus        93 l~~l~~~~------~~~l~~L~~L~L~~N-~~~c~~~~  123 (174)
T 2r9u_A           93 LKSIPRGA------FDNLKSLTHIYLYNN-PWDCECRD  123 (174)
T ss_dssp             CCCCCTTT------TTTCTTCSEEECCSS-CBCTTBGG
T ss_pred             cceeCHHH------hccccCCCEEEeCCC-Cccccccc
Confidence            98887654      789999999999999 77777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.90  E-value=9e-11  Score=107.37  Aligned_cols=124  Identities=24%  Similarity=0.272  Sum_probs=97.3

Q ss_pred             cccEEEeecC--Cccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          200 GAKRVSLMGN--GIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       200 ~lr~Lsl~~~--~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .++...+.+.  .++.++ .+..+++|++|++++|.+..+| . ++.+++|++|++++| .++.+|..       ++.++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~-------~~~~~   93 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENL-------DAVAD   93 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSH-------HHHHH
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-Ccccccch-------hhcCC
Confidence            4555555543  444444 3577899999999999888888 4 889999999999999 88766643       57889


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      +|++|++++| .++.+|.  ++.+++|++|++.+|.+...             ..+..+..+++|+.|++..+
T Consensus        94 ~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~-------------~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           94 TLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNW-------------GEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HCSEEEEEEE-ECCCHHH--HHHHHHSSEEEESEEECCCH-------------HHHHHHTTTTTCSEEEECSC
T ss_pred             cCCEEECcCC-cCCcCCc--cccCCCCCEEECCCCcCCch-------------hHHHHHhcCCCCCEEEecCC
Confidence            9999999999 8999884  88999999999999877541             23357888999999888854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=2.9e-09  Score=106.40  Aligned_cols=104  Identities=20%  Similarity=0.334  Sum_probs=88.1

Q ss_pred             EEEeecC-CcccccCCCCCCCccEEEecC-CcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          203 RVSLMGN-GIRSLSEIPTCPRLVTLLLGG-NRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       203 ~Lsl~~~-~~~~l~~~~~~~~Lr~L~l~~-~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      .+...++ .+..+|.+..+.+|+.|+|++ |.+..++...|+.+++|++|+|++| .++.+|+..      +++|++|++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~------~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA------FHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG------GGSCSCCCE
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH------hcCCcCCCE
Confidence            3566666 788888888888999999996 8999999777999999999999999 998877543      799999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      |+|++| .++.+|.+.+..+. |++|++.+|...-
T Consensus        85 L~l~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           85 LNLSFN-ALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EECCSS-CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EeCCCC-ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999 89999987455555 9999999987753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=6.7e-09  Score=102.95  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc
Q 008415          220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG  264 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~  264 (566)
                      |++|+.|.+.. .+..+++..|.++++|+.|+++++ .+..+++.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~  142 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPE  142 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTT
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-Cccccchh
Confidence            89999999988 788888888999999999999988 77666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=2.2e-07  Score=94.38  Aligned_cols=119  Identities=16%  Similarity=0.239  Sum_probs=79.6

Q ss_pred             cccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          200 GAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      .++.+.+.. .++.++  .+..+ +|+.+.+..+ +..++...|.++ +|+.+.+..  .++.++...      +.++.+
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~a------F~~c~~  181 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDI------FYYCYN  181 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSST------TTTCTT
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHH------hhCccc
Confidence            444444432 344443  23454 6888888765 777877777775 688888875  466666543      788889


Q ss_pred             CcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          278 LRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      |+.+++.++ .++.+|.+++. ..+|+.+.+..+ +..              -....+.++.+|+.+.+.
T Consensus       182 L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~--------------I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          182 LKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKE--------------IGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCE--------------ECTTTTTTCTTCCCEECC
T ss_pred             CCeeecCCC-cceEechhhEe-ecccCEEEeCCc-hhe--------------ehhhHhhCCCCCCEEecC
Confidence            999999888 78888887565 588888888744 222              123345666777776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.69  E-value=9.8e-07  Score=89.53  Aligned_cols=266  Identities=9%  Similarity=0.005  Sum_probs=151.2

Q ss_pred             CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcC
Q 008415          220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISG  299 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~  299 (566)
                      +..++.+.+... ++.++...|.++ +|+.+.+..+  ++.++..-      +.+ .+|+.+.+..  .++.++.+++..
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~a------F~~-~~L~~i~lp~--~l~~I~~~aF~~  178 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMA------FFN-STVQEIVFPS--TLEQLKEDIFYY  178 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTT------TTT-CCCCEEECCT--TCCEECSSTTTT
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHh------cCC-CCceEEEeCC--CccEehHHHhhC
Confidence            466777776653 667777667775 6888887654  66665433      455 3688888875  477787766888


Q ss_pred             CCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCC
Q 008415          300 FSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS  379 (566)
Q Consensus       300 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  379 (566)
                      +++|+.+++..+.+...              ....+. ..+|+.+.+.. +...++.  .....+.+|+.+.+...   .
T Consensus       179 c~~L~~l~l~~n~l~~I--------------~~~aF~-~~~L~~l~lp~-~l~~I~~--~aF~~~~~L~~l~l~~~---l  237 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKL--------------PASTFV-YAGIEEVLLPV-TLKEIGS--QAFLKTSQLKTIEIPEN---V  237 (401)
T ss_dssp             CTTCCEEECTTSCCSEE--------------CTTTTT-TCCCSEEECCT-TCCEECT--TTTTTCTTCCCEECCTT---C
T ss_pred             cccCCeeecCCCcceEe--------------chhhEe-ecccCEEEeCC-chheehh--hHhhCCCCCCEEecCCC---c
Confidence            88888888877655431              111122 35666666641 1111111  01122346666666541   1


Q ss_pred             CCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCC----CCCch--hhccCCcceEeE
Q 008415          380 PPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKA----KDLTW--LVFVQNLKVLRI  453 (566)
Q Consensus       380 ~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l----~~l~~--l~~l~~L~~L~L  453 (566)
                      ..+....+.. .+|+.+.+.+ .+..++..        ....+++|+.+.+.+...-    ..++.  +..+++|+.+.|
T Consensus       238 ~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~--------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          238 STIGQEAFRE-SGITTVKLPN-GVTNIASR--------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             CEECTTTTTT-CCCSEEEEET-TCCEECTT--------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             cCcccccccc-CCccEEEeCC-CccEEChh--------HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            1222223444 5777777733 23333221        1235577888877653211    11222  666788888888


Q ss_pred             ecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCC-CCCCCccEEeecCCCCCCCCCCCCcccc-
Q 008415          454 GDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNP-LPFPKLKKIDVCHCPQLKKLPLNSSSAK-  531 (566)
Q Consensus       454 ~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~-~~~p~L~~L~i~~C~~L~~lP~~~~~~l-  531 (566)
                      .+  .++.|..            ..+..+++|+.+.|..  +++.+.... ..+ +|+.+.+.+. .+..++.+.-..+ 
T Consensus       308 ~~--~i~~I~~------------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          308 PE--SIRILGQ------------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFP  369 (401)
T ss_dssp             CT--TCCEECT------------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSC
T ss_pred             CC--ceEEEhh------------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCC
Confidence            63  4555543            2456678888888853  466665432 334 8999999874 5666665543332 


Q ss_pred             CCcEEEechhhhhhcc
Q 008415          532 ERRVVIEGEKKWWEEL  547 (566)
Q Consensus       532 ~~L~i~~~~~~~~~~l  547 (566)
                      ..+..+..+....+..
T Consensus       370 ~~l~~l~vp~~~~~~y  385 (401)
T 4fdw_A          370 DDITVIRVPAESVEKY  385 (401)
T ss_dssp             TTCCEEEECGGGHHHH
T ss_pred             CCccEEEeCHHHHHHh
Confidence            4566666665544433

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.54  E-value=3e-08  Score=106.62  Aligned_cols=134  Identities=12%  Similarity=0.113  Sum_probs=98.2

Q ss_pred             hhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHHHH-----
Q 008415           14 FDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKLET-----   83 (566)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l~~-----   83 (566)
                      .+++|++|...++...   .          ...+.+.+|+++|   |+|+  .|+.++.+  ..+|..+++.+..     
T Consensus       288 ~~ea~~L~~~~~~~~~---~----------~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~  352 (591)
T 1z6t_A          288 KEKGLEILSLFVNMKK---A----------DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKR  352 (591)
T ss_dssp             HHHHHHHHHHHHTSCG---G----------GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHhCCCc---c----------cccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHH
Confidence            4678888877664311   1          1123456667777   8774  34555543  3479998887763     


Q ss_pred             -------------hhHHHhhhchHHHHHHHhcccccCccccCCC---CChHHHHHHHHhcCCCcccccHhHHHHHHHHcc
Q 008415           84 -------------EYTELERDRAQEMDRLCLGGLCSKNFVSNSE---IPKRQLIDYWISEGFVCDFDDGCDFIDDLLQAC  147 (566)
Q Consensus        84 -------------~~~~~~~~~L~~~lK~Cf~lyc~~~~~~Fp~---i~~~~Li~~wiaegfi~~~~~~~~~~~~L~~r~  147 (566)
                                   .+.+.+++.||++.|.|| +||    |+||+   |+.+.++..|.+++     ..+..++++|+++|
T Consensus       353 ~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l-~~l----a~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~~~~  422 (591)
T 1z6t_A          353 IRKSSSYDYEALDEAMSISVEMLREDIKDYY-TDL----SILQKDVKVPTKVLCILWDMET-----EEVEDILQEFVNKS  422 (591)
T ss_dssp             SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH-HHG----GGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTT
T ss_pred             hhhccccchHHHHHHHHHHHHhCCHHHHHHH-HHc----cccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHHhCc
Confidence                         234567888999999999 999    99998   88899999997542     12888999999999


Q ss_pred             ccccc---CCcceecchhHHHHHHHHhc
Q 008415          148 LLEEE---GDDHVKMHDMIREMSLWIAC  172 (566)
Q Consensus       148 ll~~~---~~~~~~mHdli~dl~~~i~~  172 (566)
                      |++..   ....|+|||++|++++..+.
T Consensus       423 Ll~~~~~~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          423 LLFCDRNGKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             SSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred             CeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence            99864   23479999999999997743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.51  E-value=2.7e-07  Score=91.97  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=85.5

Q ss_pred             EEecCC-ccccCCCccccccccEEEeec-CCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          182 LVHAGV-ELTEAPKFEEWEGAKRVSLMG-NGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~~~lr~Lsl~~-~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      +...+. .+..+|.+....+++.|++++ |.+..++.  +..+++|+.|+|++|.+..+++..|+++++|++|+|++| .
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A   91 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence            455555 677788766678899999996 99998874  789999999999999999998877999999999999999 9


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCcc
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSII  292 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l  292 (566)
                      ++.+|..+      +..+. |++|+|.+| .+...
T Consensus        92 l~~~~~~~------~~~~~-L~~l~l~~N-~~~c~  118 (347)
T 2ifg_A           92 LESLSWKT------VQGLS-LQELVLSGN-PLHCS  118 (347)
T ss_dssp             CSCCCSTT------TCSCC-CCEEECCSS-CCCCC
T ss_pred             cceeCHHH------cccCC-ceEEEeeCC-CccCC
Confidence            99888655      45555 999999999 66643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.33  E-value=1.4e-07  Score=94.82  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=16.0

Q ss_pred             CCccEEEecCCccccc-chHHHhcCccCCEEecCCCCCCc
Q 008415          221 PRLVTLLLGGNRIEEI-TDGFFQSMSTLRVLSLRINISLR  259 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~l-p~~~~~~l~~Lr~L~L~~~~~i~  259 (566)
                      ++|++|++++|.+... ...+...+++|++|+|++| .++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~  139 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLG  139 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCC
Confidence            4555555555544321 1111223344555555555 443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.20  E-value=2.6e-07  Score=92.89  Aligned_cols=166  Identities=17%  Similarity=0.095  Sum_probs=103.9

Q ss_pred             CCCccEEEecCCcccccchHHHh-----cCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch
Q 008415          220 CPRLVTLLLGGNRIEEITDGFFQ-----SMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH  294 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~~lp~~~~~-----~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~  294 (566)
                      +++|+.|++++|.+.......+.     ...+|++|+|++| .++.-.     +..-...+.+|++|+|++| .++..+.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~-----~~~l~~~L~~L~~L~Ls~n-~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAG-----LRTLLPVFLRARKLGLQLN-SLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHH-----HHHTHHHHHTEEEEECCSS-CCCHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHH-----HHHHHHHHHhccHhhcCCC-CCCHHHH
Confidence            46788888888877643332232     2368999999999 775311     1111345678999999999 7765443


Q ss_pred             hhh-----cCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccc--hhccccCCcccccc
Q 008415          295 QLI-----SGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLG--VQNFLKYPKLVSIT  367 (566)
Q Consensus       295 ~~i-----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~--~~~~~~~~~~~~~L  367 (566)
                      ..+     ...++|++|++++|.+...          ........+...++|+.|+++.+....  ...+........+|
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~----------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAA----------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL  213 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHH----------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChH----------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence            223     3568899999999877531          011234455778889999988765432  22233333334689


Q ss_pred             eEEEEecccCCCCCeeee----ccccccCcceEEEeccccc
Q 008415          368 QSVLVKSGVHTSPPFNVL----HLAYMENLQKFELESCNLE  404 (566)
Q Consensus       368 ~~L~l~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~  404 (566)
                      +.|++++ +. .......    .+...++|++|++++|.+.
T Consensus       214 ~~L~Ls~-N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          214 QELNVAY-NG-AGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CEEECCS-SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CeEECCC-CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            9999987 42 2221111    2445688999999998843

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=3.7e-06  Score=73.77  Aligned_cols=90  Identities=10%  Similarity=-0.021  Sum_probs=61.1

Q ss_pred             CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc----ccCcEecccCcccCCccchh
Q 008415          220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL----EKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L----~~L~~L~L~~~~~l~~lP~~  295 (566)
                      -.+|+.|++++|.++...-..+..+++|+.|+|++|..|+.--  +    ..+..+    ++|++|+|++|.+++.---.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--L----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--L----ERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--H----HHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--H----HHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            3578889999887765433346788899999999885565311  1    113443    36888888888767653322


Q ss_pred             hhcCCCCCcEEEecCCCCcc
Q 008415          296 LISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       296 ~i~~L~~L~~L~l~~~~~~~  315 (566)
                      .+.++++|++|++++|....
T Consensus       134 ~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCC
T ss_pred             HHhcCCCCCEEECCCCCCCC
Confidence            36778888888888887543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.96  E-value=9.1e-06  Score=80.96  Aligned_cols=172  Identities=15%  Similarity=0.100  Sum_probs=88.2

Q ss_pred             HhcCccCCEEecCCCCCCcccccc-c--cccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccc
Q 008415          241 FQSMSTLRVLSLRINISLRKLPSG-I--RGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVT  317 (566)
Q Consensus       241 ~~~l~~Lr~L~L~~~~~i~~lp~~-i--~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~  317 (566)
                      +.++++||.|.+... ......-+ +  ..++.-+..+++|+.|+|++|..+ .+|.  +. +++|++|++..|.+..  
T Consensus       135 ~~~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~--  207 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDI-DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPD--  207 (362)
T ss_dssp             HHHHTTCSEEEECCC-CTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCH--
T ss_pred             hhhcchhhheeecCc-chhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCCh--
Confidence            445667777777544 22110000 0  123344566778888888777323 3444  43 7788888887776543  


Q ss_pred             cccccccccCccchHhhhc--CCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcce
Q 008415          318 EEEGNVLCEDAEPLMKELL--GSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQK  395 (566)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~--~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~  395 (566)
                                  ..+..+.  .+++|+.|+++.........  ...   ..+.              .......+++|+.
T Consensus       208 ------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~---~~l~--------------~~l~~~~~p~Lr~  256 (362)
T 2ra8_A          208 ------------SVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM---NVFR--------------PLFSKDRFPNLKW  256 (362)
T ss_dssp             ------------HHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG---GGTG--------------GGSCTTTCTTCCE
T ss_pred             ------------HHHHHHHHccCCCCcEEEEeccccccccc--hhH---HHHH--------------HHHhcCCCCCcCE
Confidence                        3444443  67778777775321000000  000   0000              0001124577888


Q ss_pred             EEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCC-----Cc-hhhccCCcceEeEeccc
Q 008415          396 FELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD-----LT-WLVFVQNLKVLRIGDCY  457 (566)
Q Consensus       396 L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~  457 (566)
                      |.+.+|. ......      .+.....+++|++|+|+.+ .+.+     +. .+..+++|+.|+|++|.
T Consensus       257 L~L~~~~i~~~~~~------~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          257 LGIVDAEEQNVVVE------MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             EEEESCTTHHHHHH------HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             EeCCCCCCchHHHH------HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            8887766 221110      0111124678888888653 4544     11 24567888888887775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.94  E-value=0.00019  Score=72.65  Aligned_cols=107  Identities=17%  Similarity=0.341  Sum_probs=53.1

Q ss_pred             cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcccccc-----------
Q 008415          198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG-----------  264 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~-----------  264 (566)
                      +.+++.+.+.. .++.+.  ++..|.+|+.+.+..+ +..++...|.++..|+.+.+..+  +..++..           
T Consensus        70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEE
T ss_pred             CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccccccc
Confidence            34556665542 344443  3456666666666543 55555555666666665544322  2211111           


Q ss_pred             ----cccc-CcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecC
Q 008415          265 ----IRGL-PQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG  310 (566)
Q Consensus       265 ----i~~L-P~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~  310 (566)
                          +..+ ...+.++.+|+.+.+.++  +..++.+++..+.+|+.+.+..
T Consensus       146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          146 IPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence                0001 112445556666666543  4555555556666666666544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=1.6e-05  Score=69.72  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      .+|++||+++| .++..--..+.++++|++|++.+|..
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~   97 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHY   97 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred             ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCc
Confidence            35777777777 45543222256666777777776653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.71  E-value=1.1e-05  Score=76.24  Aligned_cols=90  Identities=24%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             CCCCCccE--EEecCCcccccch---HHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCcc
Q 008415          218 PTCPRLVT--LLLGGNRIEEITD---GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSII  292 (566)
Q Consensus       218 ~~~~~Lr~--L~l~~~~l~~lp~---~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l  292 (566)
                      ...+.|+.  +++..|....++.   ....++++|+.|+|++| .++.++.    +|..++.+++|++|+|++| .++.+
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~----l~~~~~~l~~L~~L~Ls~N-~i~~~  211 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDD----MSSIVQKAPNLKILNLSGN-ELKSE  211 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGG----GTTHHHHSTTCCEEECTTS-CCCSG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCcc----chhHHhhCCCCCEEECCCC-ccCCc
Confidence            33344544  4555553333332   12356888999999999 8876642    4555788899999999998 78877


Q ss_pred             chhhhcCCC--CCcEEEecCCCCcc
Q 008415          293 PHQLISGFS--KLEVLRLFGCGFWV  315 (566)
Q Consensus       293 P~~~i~~L~--~L~~L~l~~~~~~~  315 (566)
                      ..  +..+.  +|++|++.+|.+..
T Consensus       212 ~~--l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          212 RE--LDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             GG--GGGGTTSCCSEEECTTSTTGG
T ss_pred             hh--hhhcccCCcceEEccCCcCcc
Confidence            44  55555  89999999888753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.69  E-value=0.00044  Score=69.84  Aligned_cols=70  Identities=23%  Similarity=0.290  Sum_probs=52.3

Q ss_pred             ccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCC
Q 008415          233 IEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCG  312 (566)
Q Consensus       233 l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~  312 (566)
                      ...+....|.++++|+.+.+..+  +..++...      +.++.+|+.+++..+  ++.++..++..+..|+.+.+..+.
T Consensus       150 ~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~------F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          150 VTVIGDEAFATCESLEYVSLPDS--METLHNGL------FSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT--CCEECTTT------TTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             ccccchhhhcccCCCcEEecCCc--cceecccc------ccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence            34455666888999999998754  45565544      778889999998765  778887778888899888876543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.68  E-value=5.3e-05  Score=71.58  Aligned_cols=82  Identities=29%  Similarity=0.367  Sum_probs=63.2

Q ss_pred             CCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCccccccccccCcchhccc--cCcEecccCcccCC-cc
Q 008415          218 PTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE--KLRYLNLDYTRFLS-II  292 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~--~L~~L~L~~~~~l~-~l  292 (566)
                      ..+++|++|+|++|.+..++.  ..++.+++|++|+|++| .++.+..        +..+.  +|++|+|++| .+. .+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--------l~~l~~l~L~~L~L~~N-pl~~~~  236 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--------LDKIKGLKLEELWLDGN-SLCDTF  236 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--------GGGGTTSCCSEEECTTS-TTGGGC
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--------hhhcccCCcceEEccCC-cCcccc
Confidence            468899999999998876552  33789999999999999 9987632        34444  9999999999 454 34


Q ss_pred             c------hhhhcCCCCCcEEEec
Q 008415          293 P------HQLISGFSKLEVLRLF  309 (566)
Q Consensus       293 P------~~~i~~L~~L~~L~l~  309 (566)
                      |      ..++..+++|+.|+-.
T Consensus       237 ~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          237 RDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             SSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcchhHHHHHHHHCcccCeECCc
Confidence            4      2347789999998754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.61  E-value=3.9e-05  Score=68.67  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             CCCCCccEEEecCC-cccc-----cchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc
Q 008415          218 PTCPRLVTLLLGGN-RIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI  291 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~-~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~  291 (566)
                      ...+.|++|++++| .+..     +... +...++|++|+|++| .+..-.  ...+...+...++|++|+|++| .+..
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g--~~~l~~~L~~n~~L~~L~L~~N-~i~~  107 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPV--AFALAEMLKVNNTLKSLNVESN-FISG  107 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHH--HHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHH--HHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence            44566666666666 5432     2222 455566777777766 554211  0122333444566677777666 5554


Q ss_pred             -----cchhhhcCCCCCcEEEe--cCCCCc
Q 008415          292 -----IPHQLISGFSKLEVLRL--FGCGFW  314 (566)
Q Consensus       292 -----lP~~~i~~L~~L~~L~l--~~~~~~  314 (566)
                           +... +...++|++|++  .+|.+.
T Consensus       108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          108 SGILALVEA-LQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHHG-GGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHH-HHhCCCceEEEecCCCCCCC
Confidence                 2333 555666777777  555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.56  E-value=4.2e-05  Score=68.47  Aligned_cols=111  Identities=17%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             ccccEEEeecC-Cccc-----c-cCCCCCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCCCCCcccccccc
Q 008415          199 EGAKRVSLMGN-GIRS-----L-SEIPTCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIR  266 (566)
Q Consensus       199 ~~lr~Lsl~~~-~~~~-----l-~~~~~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~  266 (566)
                      ..+++|++.+| .+..     + ..+...++|++|++++|.+..     +... +...+.|++|+|++| .|..-  +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N-~i~~~--g~~  111 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESN-FISGS--GIL  111 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSS-CCCHH--HHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCC-cCCHH--HHH
Confidence            68999999998 7754     1 123667899999999998753     3333 567789999999999 88741  112


Q ss_pred             ccCcchhccccCcEecc--cCcccCCc-----cchhhhcCCCCCcEEEecCCCCcc
Q 008415          267 GLPQELKALEKLRYLNL--DYTRFLSI-----IPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       267 ~LP~~i~~L~~L~~L~L--~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      .+...+...++|++|+|  ++| .+..     +... +...++|++|++.+|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence            34455677889999999  778 6764     3333 6677999999999887643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.42  E-value=0.0068  Score=61.02  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             cccEEEeecCCccccc--CCCCCCCccEEEecCC---cccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhc
Q 008415          200 GAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGN---RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKA  274 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~---~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~  274 (566)
                      .++.+.+-. .++.+.  ++..|.+|+.+.+..+   .+..+....|..+.+|+.+.+..+  ++.++...      +..
T Consensus        65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~a------F~~  135 (394)
T 4gt6_A           65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEA------FHH  135 (394)
T ss_dssp             CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTT------TTT
T ss_pred             cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhh------hhh
Confidence            477787754 355554  4688999999999876   477888888888998888776543  55555433      677


Q ss_pred             cccCcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415          275 LEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC  311 (566)
Q Consensus       275 L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~  311 (566)
                      +.+|+.+.+...  +..++..++..+.+|+.+.+..+
T Consensus       136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hcccccccccce--eeeecccceecccccccccccce
Confidence            888999888754  67777776888888888888654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.40  E-value=0.011  Score=59.35  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             CCCCC-CccEEEecCCcccccchHHHhcCccCCEEecCCC--CCCccccccccccCcchhccccCcEecccCcccCCccc
Q 008415          217 IPTCP-RLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN--ISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIP  293 (566)
Q Consensus       217 ~~~~~-~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~--~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP  293 (566)
                      +..++ .|+++.+... ++.+....|.++.+|+.+.+..+  ..++.++..-      +..+.+|+.+.+..+  ++.++
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a------F~~c~~L~~i~~~~~--~~~I~  129 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA------FMFCSELTDIPILDS--VTEID  129 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT------TTTCTTCCBCGGGTT--CSEEC
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh------chhcccceeeccCCc--cceeh
Confidence            45564 5999999764 78888888999999999999765  1355555433      678889999888764  78888


Q ss_pred             hhhhcCCCCCcEEEecCC
Q 008415          294 HQLISGFSKLEVLRLFGC  311 (566)
Q Consensus       294 ~~~i~~L~~L~~L~l~~~  311 (566)
                      ..++..+.+|+.+.+...
T Consensus       130 ~~aF~~c~~L~~i~lp~~  147 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG  147 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhcccccccccce
Confidence            877899999999999754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.35  E-value=0.00047  Score=68.49  Aligned_cols=107  Identities=11%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             ccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHh--cCccCCEEecCCCC-------CCccccccccccC
Q 008415          199 EGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQ--SMSTLRVLSLRINI-------SLRKLPSGIRGLP  269 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~--~l~~Lr~L~L~~~~-------~i~~lp~~i~~LP  269 (566)
                      ++++.|.+.++.-..++.. .+++|+.|.+..+.+..-.-..+.  .+++|++|+|+.+.       .+..+...+    
T Consensus       172 P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l----  246 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF----  246 (362)
T ss_dssp             TTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS----
T ss_pred             CCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH----
Confidence            4666666665532223332 356677777666654321111122  56667777664210       011111100    


Q ss_pred             cchhccccCcEecccCcccCCc-cchhhh---cCCCCCcEEEecCCCC
Q 008415          270 QELKALEKLRYLNLDYTRFLSI-IPHQLI---SGFSKLEVLRLFGCGF  313 (566)
Q Consensus       270 ~~i~~L~~L~~L~L~~~~~l~~-lP~~~i---~~L~~L~~L~l~~~~~  313 (566)
                       ..+.+++|++|++++| .+.. .+.. +   ..+++|++|+++.|.+
T Consensus       247 -~~~~~p~Lr~L~L~~~-~i~~~~~~~-la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          247 -SKDRFPNLKWLGIVDA-EEQNVVVEM-FLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             -CTTTCTTCCEEEEESC-TTHHHHHHH-HHHCSSGGGCSEEECCSSCC
T ss_pred             -hcCCCCCcCEEeCCCC-CCchHHHHH-HHhCccCCCCCEEECCCCCC
Confidence             0124566666666666 3332 1111 2   2456666666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.94  E-value=0.01  Score=49.17  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             EEecCCCCCCc--cccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCC
Q 008415          249 VLSLRINISLR--KLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       249 ~L~L~~~~~i~--~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                      +++.++. .++  .+|..+   |      .+|++|+|++| .|+.||.+++..+++|++|++.+|..
T Consensus        12 ~v~Cs~~-~L~~~~vP~~l---p------~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTAF---P------VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSS-CCCTTTSCSCC---C------TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCC-CCccccCCCCC---C------cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence            5666666 666  666432   2      35777777777 77777777677777888888877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.84  E-value=0.0091  Score=49.52  Aligned_cols=52  Identities=25%  Similarity=0.361  Sum_probs=27.7

Q ss_pred             EEEeecCCcc--cccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCC
Q 008415          203 RVSLMGNGIR--SLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN  255 (566)
Q Consensus       203 ~Lsl~~~~~~--~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~  255 (566)
                      +++.++++++  .+|.. -.++|+.|+|++|.+..+|..+|..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4444455554  44421 1234566666666666565555555666666666655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.56  E-value=0.026  Score=56.23  Aligned_cols=103  Identities=14%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             cccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          198 WEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ...++.+.+..+ +..+.  .+..+..|+.+.+..+ +..+....|.++.+|+.+.+..  .++.++...      +.++
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a------F~~c  285 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLL------CSGC  285 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTT------TTTC
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccc------cccc
Confidence            345666665432 33332  3467788888888765 6677777788888888888864  366666544      6788


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCC
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGC  311 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~  311 (566)
                      .+|+.+.+.++ .++.++..++.++.+|+.+.+..+
T Consensus       286 ~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          286 SNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccccccccc-ccceehhhhhcCCCCCCEEEcCcc
Confidence            88888888877 688888777888888888888644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.92  E-value=0.041  Score=54.82  Aligned_cols=106  Identities=18%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415          217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL  296 (566)
Q Consensus       217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~  296 (566)
                      +..+.+|+.+.+..+ +..++...+..+..|+.+.+..+  ++.++...      +.++.+|+.+.+...  ++.++..+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~a------F~~~~~l~~i~l~~~--i~~i~~~a  281 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFL------LQNCTALKTLNFYAK--VKTVPYLL  281 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTT------TTTCTTCCEEEECCC--CSEECTTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccc------cceeehhcccccccc--ceeccccc
Confidence            466788898888655 66677777888999999998754  66665543      678889999999764  88898877


Q ss_pred             hcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          297 ISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       297 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      +..+.+|+.+.+.++.+..              -....+.++.+|+.+.+.
T Consensus       282 F~~c~~L~~i~l~~~~i~~--------------I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIET--------------LEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCE--------------ECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccccce--------------ehhhhhcCCCCCCEEEcC
Confidence            9999999999998765543              123346677788877775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.83  E-value=1.2  Score=39.49  Aligned_cols=85  Identities=15%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             CCccEEEecCC-cccc-----cchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc---
Q 008415          221 PRLVTLLLGGN-RIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI---  291 (566)
Q Consensus       221 ~~Lr~L~l~~~-~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~---  291 (566)
                      +.|+.|+++++ .+..     +-+. +..-..|+.|+|++| .|..--.  ..+-..+..=+.|++|+|++| .|..   
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n-~igd~ga--~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga  115 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEA--RGLIELIETSPSLRVLNVESN-FLTPELL  115 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHH--TTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCC-CCChHHH--HHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence            45566666553 3321     2222 444556666666666 5542110  112222333355666666666 4542   


Q ss_pred             --cchhhhcCCCCCcEEEecCC
Q 008415          292 --IPHQLISGFSKLEVLRLFGC  311 (566)
Q Consensus       292 --lP~~~i~~L~~L~~L~l~~~  311 (566)
                        |-.. +..=+.|++|++.++
T Consensus       116 ~ala~a-L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRS-TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHH-TTTTCCCSEEECCCC
T ss_pred             HHHHHH-HhhCCceeEEECCCC
Confidence              1121 344455777777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	566
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 6e-06
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 14/127 (11%)

Query: 182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFF 241
           L     +++             + L  N +  +S I     L  L L  N I +I+    
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--V 325

Query: 242 QSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFS 301
            S++ L+ L    N         +  +   L  L  + +L+  + +   + P   ++  +
Sbjct: 326 SSLTKLQRLFFANN--------KVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLT 373

Query: 302 KLEVLRL 308
           ++  L L
Sbjct: 374 RITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSG 264
           +L  N I  +S + +  +L  L    N++ +++     +++ +  LS   N         
Sbjct: 313 TLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHN--------Q 362

Query: 265 IRGLPQELKALEKLRYLNLDY 285
           I  L   L  L ++  L L+ 
Sbjct: 363 ISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 18/171 (10%)

Query: 156 HVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS 215
            ++  D+       I+          L+    ++++            +SL GN ++ + 
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 235

Query: 216 EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN-----ISLRKLPSG------ 264
            + +   L  L L  N+I  +       ++ L  L L  N       L  L +       
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 265 --IRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGF 313
                    +  L+ L YL L +     I P   +S  +KL+ L       
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKV 341

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 156 HVKMHDMIREMSLWIACTVDKEEQNFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS 215
            +   ++       I+   + +   +L      +++          +R+    N +  +S
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS 345

Query: 216 EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRIN 255
            +     +  L  G N+I ++T     +++ +  L L   
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + + L    +  L  +     +  L L  NR+  +                   + + + 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR----------CLEVLQA 50

Query: 262 PSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFG 310
                     +  L +L+ L L   R       Q +    +L +L L G
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPS 263
               V L +   RI  +     +++  LR  S     +L+KLP+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLPT 240

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 43/319 (13%), Positives = 88/319 (27%), Gaps = 48/319 (15%)

Query: 218 PTCPR-----LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL 272
           P CP      L  +      +E++            +L L+ N  + ++         + 
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLEKVPKDLP---PDTALLDLQNN-KITEIK------DGDF 51

Query: 273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLM 332
           K L+ L  L L   +   I P    +   KLE L L       + E+    + +  + L 
Sbjct: 52  KNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPEK----MPKTLQELR 106

Query: 333 KELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMEN 392
                  H N ++   +S     N +   +L +             S          M+ 
Sbjct: 107 ------VHENEITKVRKSVFNGLNQMIVVELGTNP---------LKSSGIENGAFQGMKK 151

Query: 393 LQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLR 452
           L    +   N+  +       + +L   G    N ++       K L  L  +       
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDG----NKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 453 IGDCYDMEEIISVDKLRDIS----VIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPK 508
                         +   ++    V +         ++ + +    N+ ++  N    P 
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH-NNNISAIGSNDFCPPG 266

Query: 509 LKKIDVCHCPQLKKLPLNS 527
                         + L S
Sbjct: 267 YN----TKKASYSGVSLFS 281

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 193 PKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSL 252
                      +    N I  +S + + P L+ + L  N+I +++     + S L +++L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224

Query: 253 R 253
            
Sbjct: 225 T 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL 261
           + +++  N +  L  +P  PRL  L+   N + E+ +        L+ L +  N      
Sbjct: 287 EELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE----LPQNLKQLHVEYN------ 334

Query: 262 PSGIRGLPQELKALEKLR 279
              +R  P   +++E LR
Sbjct: 335 --PLREFPDIPESVEDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	566
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.25
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.47

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.6e-18  Score=174.14  Aligned_cols=75  Identities=17%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             ecCCccccCCCccccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccc
Q 008415          184 HAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKL  261 (566)
Q Consensus       184 ~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~l  261 (566)
                      ..+.++..+..+..++++++|++++|++++++.+..+++|+.|++++|.+..+++  ++++++|++|+++++ .++.+
T Consensus        51 l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~-~~~~~  125 (384)
T d2omza2          51 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDI  125 (384)
T ss_dssp             CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred             CCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--ccccccccccccccc-ccccc
Confidence            3344444444455556666666666666666666666666666666666665553  566666666666665 54443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1e-17  Score=162.89  Aligned_cols=283  Identities=17%  Similarity=0.166  Sum_probs=180.1

Q ss_pred             eEEEecCCccccCCCccccccccEEEeecCCccccc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCC
Q 008415          180 NFLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINIS  257 (566)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~  257 (566)
                      ..+.+.+.++..+|.. -...+++|++++|.++.++  .+..+++|++|+++++.+..+++..|.++++|++|++++| .
T Consensus        13 ~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~   90 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-Q   90 (305)
T ss_dssp             TEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-c
Confidence            3455566667776652 2367888888888888886  3577888888888888888776655888888888888888 8


Q ss_pred             CccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcC
Q 008415          258 LRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLG  337 (566)
Q Consensus       258 i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (566)
                      ++.+|...         ...|+.|++.++ .+..++..++.....++.+....+....            .......+..
T Consensus        91 l~~l~~~~---------~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~------------~~~~~~~~~~  148 (305)
T d1xkua_          91 LKELPEKM---------PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS------------SGIENGAFQG  148 (305)
T ss_dssp             CSBCCSSC---------CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG------------GGBCTTGGGG
T ss_pred             cCcCccch---------hhhhhhhhcccc-chhhhhhhhhhccccccccccccccccc------------cCCCcccccc
Confidence            87777532         356778888888 7788877657777788888877665543            2233445667


Q ss_pred             CCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeeccccccccc
Q 008415          338 SKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKL  417 (566)
Q Consensus       338 L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~  417 (566)
                      +++|+.+.+..+....++.     ...++++.|++.+ .. ........+..++.++.|.+++|.+..++...       
T Consensus       149 l~~L~~l~l~~n~l~~l~~-----~~~~~L~~L~l~~-n~-~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~-------  214 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDG-NK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-------  214 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCS-----SCCTTCSEEECTT-SC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTT-------
T ss_pred             ccccCccccccCCccccCc-----ccCCccCEEECCC-Cc-CCCCChhHhhcccccccccccccccccccccc-------
Confidence            7778877776543332221     1235677777775 32 12222234666677778887777754443221       


Q ss_pred             CccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccc
Q 008415          418 FQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNL  496 (566)
Q Consensus       418 ~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L  496 (566)
                       ...+++|++|+|+++ .++.+|. +..+++|++|+++++ .++.+....+...      ......++|+.|.|.+.+ +
T Consensus       215 -~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~------~~~~~~~~L~~L~L~~N~-~  284 (305)
T d1xkua_         215 -LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP------GYNTKKASYSGVSLFSNP-V  284 (305)
T ss_dssp             -GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS------SCCTTSCCCSEEECCSSS-S
T ss_pred             -ccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCc------chhcccCCCCEEECCCCc-C
Confidence             135677888888776 5566644 677778888888776 3555543222111      123445667777777654 5


Q ss_pred             cccCCCCCCCCCcc
Q 008415          497 KSVYPNPLPFPKLK  510 (566)
Q Consensus       497 ~~l~~~~~~~p~L~  510 (566)
                      +.++...++|+.++
T Consensus       285 ~~~~~~~~~f~~~~  298 (305)
T d1xkua_         285 QYWEIQPSTFRCVY  298 (305)
T ss_dssp             CGGGSCGGGGTTCC
T ss_pred             ccCcCCHhHhcccc
Confidence            55544445555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=8.8e-18  Score=168.72  Aligned_cols=304  Identities=15%  Similarity=0.172  Sum_probs=177.7

Q ss_pred             cccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          196 EEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       196 ~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ....++++|.+.+++++.++.+..+++|++|++++|+++.+|+  ++++++|++|++++| .+..+++        ++++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~~--------l~~l  109 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--------LANL  109 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--------GTTC
T ss_pred             HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-ccccccc--------cccc
Confidence            3456899999999999988888899999999999999999885  899999999999999 8877653        6899


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCccc--------------------ccc-------cccccccCc
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVV--------------------TEE-------EGNVLCEDA  328 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~--------------------~~~-------~~~~~~~~~  328 (566)
                      ++|++|++.++ .+..++.  ......+..+....+.....                    ...       .........
T Consensus       110 ~~L~~L~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         110 TNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             TTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-ccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            99999999998 7777776  55666666666554332111                    000       000000011


Q ss_pred             cchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeee
Q 008415          329 EPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKI  408 (566)
Q Consensus       329 ~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~  408 (566)
                      .........+++++.+.++.+....+..    .....+|+.|++.+ +.   -..+..+..+++|+.|++.+|.+..++ 
T Consensus       187 ~~~~~~~~~l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~-n~---l~~~~~l~~l~~L~~L~l~~n~l~~~~-  257 (384)
T d2omza2         187 VSDISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNG-NQ---LKDIGTLASLTNLTDLDLANNQISNLA-  257 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCS-SC---CCCCGGGGGCTTCSEEECCSSCCCCCG-
T ss_pred             cccccccccccccceeeccCCccCCCCc----ccccCCCCEEECCC-CC---CCCcchhhcccccchhccccCccCCCC-
Confidence            1222344556666766666443222211    12235677777766 32   112234566677777777776633221 


Q ss_pred             cccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccccccccc------ccc---ccCCCC
Q 008415          409 DSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIISVDKLRD------ISV---IIGSEH  479 (566)
Q Consensus       409 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~------~~~---~l~~~~  479 (566)
                               +...+++|++|+++++ .+..++.+..++.++.+.+..+.. +.+........      ...   .+ ..+
T Consensus       258 ---------~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l-~~~~~~~~~~~l~~L~ls~n~l~~l-~~l  325 (384)
T d2omza2         258 ---------PLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISDI-SPV  325 (384)
T ss_dssp             ---------GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSCCSCC-GGG
T ss_pred             ---------cccccccCCEeeccCc-ccCCCCcccccccccccccccccc-ccccccchhcccCeEECCCCCCCCC-ccc
Confidence                     1124456666666553 344444444444444444443321 11110000000      000   01 125


Q ss_pred             ccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcEEEec
Q 008415          480 NFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRVVIEG  539 (566)
Q Consensus       480 ~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~  539 (566)
                      ..+|+|++|+++++ .++.++ ....+|+|++|++++| +++.+|. +.. +++|+.++.
T Consensus       326 ~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~-l~~-l~~L~~L~L  380 (384)
T d2omza2         326 SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP-LAN-LTRITQLGL  380 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGG-GTT-CTTCSEEEC
T ss_pred             ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChh-hcc-CCCCCEeeC
Confidence            56788888888876 466654 3455788888888765 6777663 222 245544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=3.2e-16  Score=152.03  Aligned_cols=248  Identities=18%  Similarity=0.139  Sum_probs=151.2

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ..++++-.+.+++.+|... .+++++|++++|+++.+|+..|.++++|++|++++| .+..+++.      .+.++++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~------~f~~l~~L~   82 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPG------AFAPLVKLE   82 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTT------TTTTCTTCC
T ss_pred             cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchh------hhhCCCccC
Confidence            3455555566677776532 368888888888888888765888888888888888 77766533      368888888


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| +++.+|..   ....|+.|.+..+....              .....+.....+..+............   
T Consensus        83 ~L~l~~n-~l~~l~~~---~~~~l~~L~~~~n~l~~--------------l~~~~~~~~~~~~~l~~~~n~~~~~~~---  141 (305)
T d1xkua_          83 RLYLSKN-QLKELPEK---MPKTLQELRVHENEITK--------------VRKSVFNGLNQMIVVELGTNPLKSSGI---  141 (305)
T ss_dssp             EEECCSS-CCSBCCSS---CCTTCCEEECCSSCCCB--------------BCHHHHTTCTTCCEEECCSSCCCGGGB---
T ss_pred             EecccCC-ccCcCccc---hhhhhhhhhccccchhh--------------hhhhhhhccccccccccccccccccCC---
Confidence            8888888 78888864   34577888887776544              122223333444443333211100000   


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                                             ....+..+++|+.+.+.++.+..++           ...+++|++|++.++......
T Consensus       142 -----------------------~~~~~~~l~~L~~l~l~~n~l~~l~-----------~~~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         142 -----------------------ENGAFQGMKKLSYIRIADTNITTIP-----------QGLPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             -----------------------CTTGGGGCTTCCEEECCSSCCCSCC-----------SSCCTTCSEEECTTSCCCEEC
T ss_pred             -----------------------CccccccccccCccccccCCccccC-----------cccCCccCEEECCCCcCCCCC
Confidence                                   0112445566666666666533221           123566777777665443333


Q ss_pred             c-hhhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCC
Q 008415          440 T-WLVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCP  518 (566)
Q Consensus       440 ~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~  518 (566)
                      + .+..++.++.|.++++. +..+..            ..+..+++|++|+|+++ +++.++.....+++|+.|+++++ 
T Consensus       188 ~~~~~~~~~l~~L~~s~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-  252 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNS-ISAVDN------------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-  252 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSC-CCEECT------------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-
T ss_pred             hhHhhcccccccccccccc-cccccc------------ccccccccceeeecccc-cccccccccccccCCCEEECCCC-
Confidence            2 25666777777776653 333321            23456677777777776 46666665666777777777774 


Q ss_pred             CCCCCCC
Q 008415          519 QLKKLPL  525 (566)
Q Consensus       519 ~L~~lP~  525 (566)
                      +|+.+|.
T Consensus       253 ~i~~i~~  259 (305)
T d1xkua_         253 NISAIGS  259 (305)
T ss_dssp             CCCCCCT
T ss_pred             ccCccCh
Confidence            5777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=8.4e-17  Score=156.88  Aligned_cols=126  Identities=17%  Similarity=0.258  Sum_probs=92.7

Q ss_pred             ccccEEEeecCCccc---cc-CCCCCCCccEEEecC-Cccc-ccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          199 EGAKRVSLMGNGIRS---LS-EIPTCPRLVTLLLGG-NRIE-EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~---l~-~~~~~~~Lr~L~l~~-~~l~-~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      .+++.|++.++++..   +| .+..+++|++|++++ |.+. .+|.. |+++++|++|+|++| .+..++..      .+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~------~~  121 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPD------FL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCG------GG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccccc------cc
Confidence            368888888887763   33 467888888888886 5565 68877 888888888888888 88765543      36


Q ss_pred             hccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCC-ceEEEE
Q 008415          273 KALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHL-NVLSWT  347 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~~L~i~  347 (566)
                      .++.+|+++++++|.....+|.. ++++++|+++++.++....              ..+..+..+..+ +.+.+.
T Consensus       122 ~~~~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~--------------~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG--------------AIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE--------------ECCGGGGCCCTTCCEEECC
T ss_pred             cchhhhcccccccccccccCchh-hccCcccceeecccccccc--------------ccccccccccccccccccc
Confidence            88888888888888666677776 8888888888888887654              345556666555 444444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=3.5e-15  Score=147.40  Aligned_cols=283  Identities=19%  Similarity=0.183  Sum_probs=154.3

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ++++|++++++++.+|+.  .++|++|++++|+++++|..    +.+|+.|+++++ .++.++.    +|      ++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~----lp------~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSD----LP------PLLE  101 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCS----CC------TTCC
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhh----hc------cccc
Confidence            577788888888777753  56888888888888888764    457888888888 7776542    22      3588


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCccccccccc---c-cccCccchHhhhcCCCCCceEEEEEcCccchh
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGN---V-LCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQ  355 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~  355 (566)
                      +|++++| .+..+|.  ++.+++|++|++.++...........   . ...........++.++.++.+.+..+......
T Consensus       102 ~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         102 YLGVSNN-QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             EEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccccccc-ccccccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccc
Confidence            8888888 6888886  67788888888877765432000000   0 00001112234555666666666543221111


Q ss_pred             ccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccc--c------ccccCccCCCcccE
Q 008415          356 NFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTE--E------VKKLFQSGFRSLNT  427 (566)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~--~------~~~~~~~~l~~L~~  427 (566)
                      ...      .....+...+ .   ..........++.|+.+.+.++....++.....  .      .........++++.
T Consensus       179 ~~~------~~~~~l~~~~-~---~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~  248 (353)
T d1jl5a_         179 DLP------LSLESIVAGN-N---ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF  248 (353)
T ss_dssp             CCC------TTCCEEECCS-S---CCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             ccc------cccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            110      1122222222 1   111122344556666666666552221110000  0      00000011223333


Q ss_pred             EecccC--cCCCCC--------------ch-hhccCCcceEeEecccCcccccccccccccccccCCCCccccccceeec
Q 008415          428 VSVHYC--RKAKDL--------------TW-LVFVQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSI  490 (566)
Q Consensus       428 L~L~~c--~~l~~l--------------~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L  490 (566)
                      ..+...  ..+..+              +. ...+++|++|+|++|. ++.++                ..+++|+.|+|
T Consensus       249 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp----------------~~~~~L~~L~L  311 (353)
T d1jl5a_         249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP----------------ALPPRLERLIA  311 (353)
T ss_dssp             EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC----------------CCCTTCCEEEC
T ss_pred             cccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCccc----------------cccCCCCEEEC
Confidence            332211  111111              11 1235789999998874 44332                24789999999


Q ss_pred             cccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccCCcE
Q 008415          491 SWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPLNSSSAKERRV  535 (566)
Q Consensus       491 ~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~l~~L~  535 (566)
                      +++ ++++++.   .+++|++|++++|+ |+++|..+..+ +.|+
T Consensus       312 ~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~~~L-~~L~  350 (353)
T d1jl5a_         312 SFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESV-EDLR  350 (353)
T ss_dssp             CSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTC-CEEE
T ss_pred             CCC-cCCcccc---ccCCCCEEECcCCc-CCCCCcccccc-CeeE
Confidence            876 5777763   46789999999986 99998765443 5554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-15  Score=145.31  Aligned_cols=195  Identities=18%  Similarity=0.086  Sum_probs=133.6

Q ss_pred             cccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCc
Q 008415          200 GAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLR  279 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~  279 (566)
                      ....++..+++++.+|... .++|++|++++|.+..+|...|.++++|++|+|++| .++.+|.        ++.+++|+
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--------~~~l~~L~   80 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--------DGTLPVLG   80 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--------CSCCTTCC
T ss_pred             CCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--------cccccccc
Confidence            4455666677777776422 258899999999888888776888999999999999 8887663        46788999


Q ss_pred             EecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhcccc
Q 008415          280 YLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLK  359 (566)
Q Consensus       280 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~  359 (566)
                      +|++++| .++.+|.. +..+++|+.|+++++....              ........+.+++.|.+..+.         
T Consensus        81 ~L~Ls~N-~l~~~~~~-~~~l~~L~~L~l~~~~~~~--------------~~~~~~~~l~~l~~L~l~~n~---------  135 (266)
T d1p9ag_          81 TLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS--------------LPLGALRGLGELQELYLKGNE---------  135 (266)
T ss_dssp             EEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC--------------CCSSTTTTCTTCCEEECTTSC---------
T ss_pred             ccccccc-cccccccc-cccccccccccccccccce--------------eeccccccccccccccccccc---------
Confidence            9999998 78888876 8889999999998877654              223334455555555544221         


Q ss_pred             CCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                                         ...+....+..+++|+.|++++|.+..++.+.        ...+++|++|+|+++ .++.+
T Consensus       136 -------------------l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~--------~~~l~~L~~L~Ls~N-~L~~l  187 (266)
T d1p9ag_         136 -------------------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--------LNGLENLDTLLLQEN-SLYTI  187 (266)
T ss_dssp             -------------------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--------TTTCTTCCEEECCSS-CCCCC
T ss_pred             -------------------cceeccccccccccchhcccccccccccCccc--------cccccccceeecccC-CCccc
Confidence                               11111123445677778888777754443221        235678888888774 46677


Q ss_pred             ch-hhccCCcceEeEeccc
Q 008415          440 TW-LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       440 ~~-l~~l~~L~~L~L~~~~  457 (566)
                      |. +..+++|+.|+|++++
T Consensus       188 p~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCC
T ss_pred             ChhHCCCCCCCEEEecCCC
Confidence            54 6667888888887665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.5e-16  Score=144.78  Aligned_cols=202  Identities=20%  Similarity=0.231  Sum_probs=116.1

Q ss_pred             EeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEeccc
Q 008415          205 SLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLD  284 (566)
Q Consensus       205 sl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~  284 (566)
                      .+..+++.++.....+.+|+.|.+.+|.++.++ . +.++++|++|++++| .+..+++        +.++++|++++++
T Consensus        25 ~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~-~-l~~l~~L~~L~ls~n-~i~~~~~--------l~~l~~l~~l~~~   93 (227)
T d1h6ua2          25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-G-VQYLNNLIGLELKDN-QITDLAP--------LKNLTKITELELS   93 (227)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG--------GTTCCSCCEEECC
T ss_pred             HhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch-h-HhcCCCCcEeecCCc-eeecccc--------ccccccccccccc
Confidence            333344444333345566777777777666664 3 666777777777777 6655432        4666777777777


Q ss_pred             CcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCccc
Q 008415          285 YTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLV  364 (566)
Q Consensus       285 ~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~  364 (566)
                      +| .++.++.  +.++++|+.+.+.++....                +..+.....++.+.+.                 
T Consensus        94 ~n-~~~~i~~--l~~l~~L~~l~l~~~~~~~----------------~~~~~~~~~~~~l~~~-----------------  137 (227)
T d1h6ua2          94 GN-PLKNVSA--IAGLQSIKTLDLTSTQITD----------------VTPLAGLSNLQVLYLD-----------------  137 (227)
T ss_dssp             SC-CCSCCGG--GTTCTTCCEEECTTSCCCC----------------CGGGTTCTTCCEEECC-----------------
T ss_pred             cc-ccccccc--ccccccccccccccccccc----------------cchhccccchhhhhch-----------------
Confidence            77 5666665  6677777777776654432                1223333333333332                 


Q ss_pred             ccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhc
Q 008415          365 SITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVF  444 (566)
Q Consensus       365 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~  444 (566)
                               + +.   ......+..+++|+.|.+.+|.+...          .+...+++|++|+++++ .+++++.++.
T Consensus       138 ---------~-~~---~~~~~~~~~~~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~Ls~n-~l~~l~~l~~  193 (227)
T d1h6ua2         138 ---------L-NQ---ITNISPLAGLTNLQYLSIGNAQVSDL----------TPLANLSKLTTLKADDN-KISDISPLAS  193 (227)
T ss_dssp             ---------S-SC---CCCCGGGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSS-CCCCCGGGGG
T ss_pred             ---------h-hh---hchhhhhccccccccccccccccccc----------hhhcccccceecccCCC-ccCCChhhcC
Confidence                     2 11   11112344556677777766653211          12235677777777765 5667766777


Q ss_pred             cCCcceEeEecccCcccccccccccccccccCCCCccccccceeeccc
Q 008415          445 VQNLKVLRIGDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISW  492 (566)
Q Consensus       445 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~  492 (566)
                      +++|++|+|++| .++.+.              .+..+++|+.|+|++
T Consensus       194 l~~L~~L~Ls~N-~lt~i~--------------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         194 LPNLIEVHLKNN-QISDVS--------------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECTTS-CCCBCG--------------GGTTCTTCCEEEEEE
T ss_pred             CCCCCEEECcCC-cCCCCc--------------ccccCCCCCEEEeeC
Confidence            777777777776 344443              245677777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.2e-15  Score=138.22  Aligned_cols=204  Identities=18%  Similarity=0.233  Sum_probs=146.3

Q ss_pred             EEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCc
Q 008415          225 TLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLE  304 (566)
Q Consensus       225 ~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~  304 (566)
                      .+++..+++.....  +..+.+|++|++.+| .|+.++.        +.++++|++|++++| .+..+++  +.++++|+
T Consensus        23 ~~~l~~~~~~d~~~--~~~l~~L~~L~l~~~-~i~~l~~--------l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~   88 (227)
T d1h6ua2          23 KIAAGKSNVTDTVT--QADLDGITTLSAFGT-GVTTIEG--------VQYLNNLIGLELKDN-QITDLAP--LKNLTKIT   88 (227)
T ss_dssp             HHHTTCSSTTSEEC--HHHHHTCCEEECTTS-CCCCCTT--------GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCC
T ss_pred             HHHhCCCCcCCcCC--HHHcCCcCEEECCCC-CCCcchh--------HhcCCCCcEeecCCc-eeecccc--cccccccc
Confidence            34444455544432  566888999999999 8876642        588899999999998 7888876  88899999


Q ss_pred             EEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeee
Q 008415          305 VLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNV  384 (566)
Q Consensus       305 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  384 (566)
                      ++++.+|....                +..+..+++|+.+.+.                          . +.   ....
T Consensus        89 ~l~~~~n~~~~----------------i~~l~~l~~L~~l~l~--------------------------~-~~---~~~~  122 (227)
T d1h6ua2          89 ELELSGNPLKN----------------VSAIAGLQSIKTLDLT--------------------------S-TQ---ITDV  122 (227)
T ss_dssp             EEECCSCCCSC----------------CGGGTTCTTCCEEECT--------------------------T-SC---CCCC
T ss_pred             ccccccccccc----------------cccccccccccccccc--------------------------c-cc---cccc
Confidence            99998876542                3345666666655554                          2 11   1112


Q ss_pred             eccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEecccCcccccc
Q 008415          385 LHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGDCYDMEEIIS  464 (566)
Q Consensus       385 ~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~  464 (566)
                      ..+...+.+..+.+.++.+...          ......++|+.|.+.++ .+...+.++.+++|++|++++| .++.+. 
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n-~l~~l~-  189 (227)
T d1h6ua2         123 TPLAGLSNLQVLYLDLNQITNI----------SPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDIS-  189 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC----------GGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-
T ss_pred             chhccccchhhhhchhhhhchh----------hhhcccccccccccccc-ccccchhhcccccceecccCCC-ccCCCh-
Confidence            2345567888888877763321          12246789999999886 5667777999999999999988 455543 


Q ss_pred             cccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecC
Q 008415          465 VDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCH  516 (566)
Q Consensus       465 ~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~  516 (566)
                                   .+..+++|++|+|+++ ++++++. ...+++|+.|++++
T Consensus       190 -------------~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 -------------PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             -------------GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             -------------hhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence                         3668899999999998 6888863 56789999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.9e-15  Score=139.87  Aligned_cols=196  Identities=17%  Similarity=0.101  Sum_probs=141.9

Q ss_pred             CCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhc
Q 008415          219 TCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLIS  298 (566)
Q Consensus       219 ~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~  298 (566)
                      +...+..++.++++++.+|.. +  .++|++|+|++| .|+.+|...      +.++++|++|+|++| .++.+|.  ++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~-l--p~~l~~L~Ls~N-~i~~l~~~~------f~~l~~L~~L~L~~N-~l~~l~~--~~   74 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSEN-LLYTFSLAT------LMPYTRLTQLNLDRA-ELTKLQV--DG   74 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTS-CCSEEEGGG------GTTCTTCCEEECTTS-CCCEEEC--CS
T ss_pred             ccCCCeEEEccCCCCCeeCcC-c--CcCCCEEECcCC-cCCCcCHHH------hhccccccccccccc-ccccccc--cc
Confidence            345566678888889999876 3  267999999999 998877543      789999999999999 8999987  78


Q ss_pred             CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCC
Q 008415          299 GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHT  378 (566)
Q Consensus       299 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  378 (566)
                      .+++|++|++++|.+..               ....+..+++|+.|+++.+.                            
T Consensus        75 ~l~~L~~L~Ls~N~l~~---------------~~~~~~~l~~L~~L~l~~~~----------------------------  111 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQS---------------LPLLGQTLPALTVLDVSFNR----------------------------  111 (266)
T ss_dssp             CCTTCCEEECCSSCCSS---------------CCCCTTTCTTCCEEECCSSC----------------------------
T ss_pred             ccccccccccccccccc---------------cccccccccccccccccccc----------------------------
Confidence            89999999999987754               23345566667666665221                            


Q ss_pred             CCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch--hhccCCcceEeEecc
Q 008415          379 SPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW--LVFVQNLKVLRIGDC  456 (566)
Q Consensus       379 ~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~  456 (566)
                      ...........+.+++.|.+.++.+..++...        ...+++|+.|+++++ .+..++.  ++.+++|++|+|+++
T Consensus       112 ~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~--------~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         112 LTSLPLGALRGLGELQELYLKGNELKTLPPGL--------LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cceeeccccccccccccccccccccceecccc--------ccccccchhcccccc-cccccCccccccccccceeecccC
Confidence            11111223556788999999888855543221        135788999999885 5666654  778899999999887


Q ss_pred             cCcccccccccccccccccCCCCccccccceeecccc
Q 008415          457 YDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWG  493 (566)
Q Consensus       457 ~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~  493 (566)
                      . ++.++             ..+..+++|+.|.|.+-
T Consensus       183 ~-L~~lp-------------~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         183 S-LYTIP-------------KGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             C-CCCCC-------------TTTTTTCCCSEEECCSC
T ss_pred             C-CcccC-------------hhHCCCCCCCEEEecCC
Confidence            5 55544             35567788899988763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=2.9e-15  Score=145.72  Aligned_cols=253  Identities=15%  Similarity=0.113  Sum_probs=176.1

Q ss_pred             CCCccEEEecCCccc---ccchHHHhcCccCCEEecCC-CCCCccccccccccCcchhccccCcEecccCcccCCccchh
Q 008415          220 CPRLVTLLLGGNRIE---EITDGFFQSMSTLRVLSLRI-NISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQ  295 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~---~lp~~~~~~l~~Lr~L~L~~-~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~  295 (566)
                      ..+++.|+++++.+.   .+|.. ++++++|++|+|++ | .+.      ..+|.+|++|++|++|+|++| .+..++..
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N-~l~------g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~  119 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGIN-NLV------GPIPPAIAKLTQLHYLYITHT-NVSGAIPD  119 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEET-TEE------SCCCGGGGGCTTCSEEEEEEE-CCEEECCG
T ss_pred             cEEEEEEECCCCCCCCCCCCChH-HhcCcccccccccccc-ccc------cccccccccccccchhhhccc-cccccccc
Confidence            347899999999765   57887 89999999999997 5 665      345666799999999999999 77776655


Q ss_pred             hhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCcc-chhccccCCcccccceEEEEec
Q 008415          296 LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSL-GVQNFLKYPKLVSITQSVLVKS  374 (566)
Q Consensus       296 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~-~~~~~~~~~~~~~~L~~L~l~~  374 (566)
                      .+..+.+|+++++..|....              ..+..++++++|+.++++.+... .++....  .....++.+.+..
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~--------------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~--~l~~l~~~l~~~~  183 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSG--------------TLPPSISSLPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISR  183 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEES--------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGG--CCCTTCCEEECCS
T ss_pred             cccchhhhcccccccccccc--------------cCchhhccCcccceeeccccccccccccccc--ccccccccccccc
Confidence            58999999999999987755              46678899999999998865432 1221111  1112235555543


Q ss_pred             ccCCCCCeeeeccccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeE
Q 008415          375 GVHTSPPFNVLHLAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRI  453 (566)
Q Consensus       375 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L  453 (566)
                       . .........+..+ .+..+++.++. ...++         .....+++|+.+.+.++.....++.++.+++|+.|++
T Consensus       184 -n-~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~---------~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~L  251 (313)
T d1ogqa_         184 -N-RLTGKIPPTFANL-NLAFVDLSRNMLEGDAS---------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL  251 (313)
T ss_dssp             -S-EEEEECCGGGGGC-CCSEEECCSSEEEECCG---------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred             -c-ccccccccccccc-ccccccccccccccccc---------ccccccccccccccccccccccccccccccccccccC
Confidence             1 0111111123333 33456666655 33221         1224678999999998866556677888999999999


Q ss_pred             ecccCcccccccccccccccccCCCCccccccceeecccccccc-ccCCCCCCCCCccEEeecCCCCCCCCC
Q 008415          454 GDCYDMEEIISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLK-SVYPNPLPFPKLKKIDVCHCPQLKKLP  524 (566)
Q Consensus       454 ~~~~~l~~i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~-~l~~~~~~~p~L~~L~i~~C~~L~~lP  524 (566)
                      ++|.....+             |..++.+++|++|+|++. +++ .+| ..+.+++|+.+++.+.+.|...|
T Consensus       252 s~N~l~g~i-------------P~~l~~L~~L~~L~Ls~N-~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         252 RNNRIYGTL-------------PQGLTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CSSCCEECC-------------CGGGGGCTTCCEEECCSS-EEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             ccCeecccC-------------ChHHhCCCCCCEEECcCC-cccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence            988654333             346788999999999985 466 566 34567888888888877677655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-14  Score=136.65  Aligned_cols=216  Identities=17%  Similarity=0.184  Sum_probs=122.1

Q ss_pred             ecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCc
Q 008415          207 MGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYT  286 (566)
Q Consensus       207 ~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~  286 (566)
                      .+.+++.+|.. -.+++++|++++|+++.+|...|.++++|++|+++++ .+..++...      +..+..++.+++..+
T Consensus        19 ~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~------~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          19 PQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAA------FTGLALLEQLDLSDN   90 (284)
T ss_dssp             CSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT------TTTCTTCCEEECCSC
T ss_pred             CCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccc------ccccccccccccccc
Confidence            33444455432 1245666666666666666655666666777777666 666555433      455566666665544


Q ss_pred             ccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCccccc
Q 008415          287 RFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSI  366 (566)
Q Consensus       287 ~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~  366 (566)
                      ..++.++...+.++++|++|++.++....              ..........+|+.+++..+....+..  ........
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~--------------~~~~~~~~~~~L~~l~l~~N~l~~i~~--~~f~~~~~  154 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE--------------LGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGN  154 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCC--------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTT
T ss_pred             cccccccchhhcccccCCEEecCCccccc--------------ccccccchhcccchhhhccccccccCh--hHhccccc
Confidence            45666655446666666666666665533              123334455556666655433222210  11122245


Q ss_pred             ceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch--hhc
Q 008415          367 TQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW--LVF  444 (566)
Q Consensus       367 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~  444 (566)
                      |+.|++.+ . ....+....+..+++|+.+.+.+|.+..+..+        ....+++|+.|+++++ .+..++.  ++.
T Consensus       155 L~~L~l~~-N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~--------~f~~l~~L~~L~l~~N-~i~~~~~~~~~~  223 (284)
T d1ozna_         155 LTHLFLHG-N-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPH--------AFRDLGRLMTLYLFAN-NLSALPTEALAP  223 (284)
T ss_dssp             CCEEECCS-S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCSCCCHHHHTT
T ss_pred             hhhccccc-C-cccccchhhhccccccchhhhhhccccccChh--------Hhhhhhhccccccccc-cccccccccccc
Confidence            56666655 2 12222223466778888888888774443322        1245678888888875 4555543  777


Q ss_pred             cCCcceEeEeccc
Q 008415          445 VQNLKVLRIGDCY  457 (566)
Q Consensus       445 l~~L~~L~L~~~~  457 (566)
                      +++|++|++++++
T Consensus       224 ~~~L~~L~l~~N~  236 (284)
T d1ozna_         224 LRALQYLRLNDNP  236 (284)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccccCEEEecCCC
Confidence            8888888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.1e-14  Score=131.51  Aligned_cols=82  Identities=21%  Similarity=0.288  Sum_probs=50.0

Q ss_pred             CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhh
Q 008415          218 PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLI  297 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i  297 (566)
                      ..+++++.|+++++.+..++.  +..+++|++|++++| .++.++.        ++++++|++|++++| .+..+|.  +
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~--------l~~l~~L~~L~l~~n-~~~~~~~--l  102 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP--------LKNLTKLVDILMNNN-QIADITP--L  102 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--------GTTCTTCCEEECCSS-CCCCCGG--G
T ss_pred             HHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccc-cccCccc--------ccCCccccccccccc-ccccccc--c
Confidence            344566666666666655542  566666666666666 6655432        466666666666666 5666664  6


Q ss_pred             cCCCCCcEEEecCCCC
Q 008415          298 SGFSKLEVLRLFGCGF  313 (566)
Q Consensus       298 ~~L~~L~~L~l~~~~~  313 (566)
                      +.+++|++|++.++..
T Consensus       103 ~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             TTCTTCSEEECCSSCC
T ss_pred             cccccccccccccccc
Confidence            6666666666665544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.1e-14  Score=132.76  Aligned_cols=165  Identities=20%  Similarity=0.267  Sum_probs=88.5

Q ss_pred             CCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcC
Q 008415          220 CPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISG  299 (566)
Q Consensus       220 ~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~  299 (566)
                      +..|+.|++.++.+..++.  +..+++|++|++++| .++.++.        ++++++|++|++++| .++.+|.  +..
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~~--------~~~l~~L~~L~l~~n-~i~~l~~--l~~  110 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--------LANLKNLGWLFLDEN-KVKDLSS--LKD  110 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--------GTTCTTCCEEECCSS-CCCCGGG--GTT
T ss_pred             hcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCc-cccCccc--------cccCccccccccccc-ccccccc--ccc
Confidence            3455555666555555543  455666666666666 5655442        355666666666666 5666664  666


Q ss_pred             CCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCC
Q 008415          300 FSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTS  379 (566)
Q Consensus       300 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  379 (566)
                      +++|+.|++.+|....                +..+.++++|+.+.+..+..                            
T Consensus       111 l~~L~~L~l~~~~~~~----------------~~~l~~l~~l~~l~~~~n~l----------------------------  146 (210)
T d1h6ta2         111 LKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKI----------------------------  146 (210)
T ss_dssp             CTTCCEEECTTSCCCC----------------CGGGGGCTTCCEEECCSSCC----------------------------
T ss_pred             cccccccccccccccc----------------cccccccccccccccccccc----------------------------
Confidence            6666666666554422                22344444444443331110                            


Q ss_pred             CCeeeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCchhhccCCcceEeEec
Q 008415          380 PPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKVLRIGD  455 (566)
Q Consensus       380 ~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~  455 (566)
                      .  .......+++|+.+++.+|.+..+          .+...+++|++|+++++ .+++++.+..+++|++|+|++
T Consensus       147 ~--~~~~~~~l~~L~~l~l~~n~l~~i----------~~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 T--DITVLSRLTKLDTLSLEDNQISDI----------VPLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCC----------GGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             c--cccccccccccccccccccccccc----------ccccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            0  011233445666666666553322          11235667777777665 466666677777777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=6.5e-14  Score=127.46  Aligned_cols=122  Identities=27%  Similarity=0.331  Sum_probs=103.1

Q ss_pred             ccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          197 EWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       197 ~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      .+.+++++.+.++.+..++.+..+++|++|++++|.++.++.  ++.+++|++|++++| .++.+|.        +.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~~--------l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS--------LKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG--------GTTCT
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccc-ccccccc--------ccccc
Confidence            456899999999999998888899999999999999998875  789999999999999 8987663        68899


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                      +|++|++++| .+..++.  +..+++|+.+++.++....                +.....+++|+.++++.
T Consensus       113 ~L~~L~l~~~-~~~~~~~--l~~l~~l~~l~~~~n~l~~----------------~~~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2         113 KLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------ITVLSRLTKLDTLSLED  165 (210)
T ss_dssp             TCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGGGGGCTTCSEEECCS
T ss_pred             cccccccccc-ccccccc--ccccccccccccccccccc----------------ccccccccccccccccc
Confidence            9999999999 7888876  8999999999999887643                23455677777776663

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.48  E-value=4.7e-13  Score=131.74  Aligned_cols=260  Identities=18%  Similarity=0.121  Sum_probs=157.8

Q ss_pred             CCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCC
Q 008415          221 PRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGF  300 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L  300 (566)
                      .++++|++++++++.+|+.    +++|++|+|++| .|+.+|..          +.+|+.|++.+| .++.++.  +.  
T Consensus        38 ~~l~~LdLs~~~L~~lp~~----~~~L~~L~Ls~N-~l~~lp~~----------~~~L~~L~l~~n-~l~~l~~--lp--   97 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL----PPHLESLVASCN-SLTELPEL----------PQSLKSLLVDNN-NLKALSD--LP--   97 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC----CTTCSEEECCSS-CCSSCCCC----------CTTCCEEECCSS-CCSCCCS--CC--
T ss_pred             cCCCEEEeCCCCCCCCCCC----CCCCCEEECCCC-CCcccccc----------hhhhhhhhhhhc-ccchhhh--hc--
Confidence            4789999999999999963    578999999999 99888753          257899999999 7888775  32  


Q ss_pred             CCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCC
Q 008415          301 SKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSP  380 (566)
Q Consensus       301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  380 (566)
                      ++|++|++++|.+..                +...+.+++|+.|++..+.......      ....+..+.+.. +.   
T Consensus        98 ~~L~~L~L~~n~l~~----------------lp~~~~l~~L~~L~l~~~~~~~~~~------~~~~l~~l~~~~-~~---  151 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEK----------------LPELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGN-NQ---  151 (353)
T ss_dssp             TTCCEEECCSSCCSS----------------CCCCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCS-SC---
T ss_pred             ccccccccccccccc----------------ccchhhhccceeecccccccccccc------ccccccchhhcc-cc---
Confidence            479999999987754                2346788999999987554322221      124455565554 22   


Q ss_pred             CeeeeccccccCcceEEEeccccceeeecccc----------cccccCccCCCcccEEecccCcCCCCCchhhccCCcce
Q 008415          381 PFNVLHLAYMENLQKFELESCNLEEMKIDSTE----------EVKKLFQSGFRSLNTVSVHYCRKAKDLTWLVFVQNLKV  450 (566)
Q Consensus       381 ~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~----------~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~  450 (566)
                      ......+..++.++.|.+.++....++.....          .........++.|+.+.++++. ...++.  ..+++..
T Consensus       152 ~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~--~~~~l~~  228 (353)
T d1jl5a_         152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPD--LPPSLEA  228 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCS--CCTTCCE
T ss_pred             ccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccc
Confidence            12223456677788888877662221110000          0011223456788888888753 333321  1233333


Q ss_pred             EeEecccCcc----------------------cccccccccc-cccccCCCCccccccceeeccccccccccCCCCCCCC
Q 008415          451 LRIGDCYDME----------------------EIISVDKLRD-ISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFP  507 (566)
Q Consensus       451 L~L~~~~~l~----------------------~i~~~~~~~~-~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p  507 (566)
                      +.+.++....                      .+........ ....++.....+|+|++|+|+++ +++.++   ..++
T Consensus       229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp---~~~~  304 (353)
T d1jl5a_         229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP---ALPP  304 (353)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC---CCCT
T ss_pred             cccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCccc---cccC
Confidence            3333322111                      0000000000 00111122345789999999987 587777   3478


Q ss_pred             CccEEeecCCCCCCCCCCCCccccCCcE
Q 008415          508 KLKKIDVCHCPQLKKLPLNSSSAKERRV  535 (566)
Q Consensus       508 ~L~~L~i~~C~~L~~lP~~~~~~l~~L~  535 (566)
                      +|+.|++.+| +|+++|..+.++ +.|.
T Consensus       305 ~L~~L~L~~N-~L~~l~~~~~~L-~~L~  330 (353)
T d1jl5a_         305 RLERLIASFN-HLAEVPELPQNL-KQLH  330 (353)
T ss_dssp             TCCEEECCSS-CCSCCCCCCTTC-CEEE
T ss_pred             CCCEEECCCC-cCCccccccCCC-CEEE
Confidence            9999999886 799999765443 4443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-13  Score=126.42  Aligned_cols=198  Identities=11%  Similarity=0.112  Sum_probs=120.2

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCcc-ccccccccCcchhccccCcE
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRK-LPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i~~LP~~i~~L~~L~~  280 (566)
                      +.+...+.+++.+|... .+++++|++++|.+..+|...|.++++|++|++++| .+.. +|..      .+..++++++
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~------~f~~l~~l~~   82 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEAD------VFSNLPKLHE   82 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESC-TTCCEECSS------SEESCTTCCE
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccc-cccceeecc------cccccccccc
Confidence            45666666677776422 257888999988888888776888899999999888 6543 3332      3677888888


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccC
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKY  360 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~  360 (566)
                      |.+..+..+..++.+.+.++++|++|++.++.+..                ......+..++.+........        
T Consensus        83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~----------------~~~~~~~~~l~~l~~~~~~n~--------  138 (242)
T d1xwdc1          83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH----------------LPDVHKIHSLQKVLLDIQDNI--------  138 (242)
T ss_dssp             EEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS----------------CCCCTTTCBSSCEEEEEESCT--------
T ss_pred             ccccccccccccccccccccccccccccchhhhcc----------------ccccccccccccccccccccc--------
Confidence            88876657777777667888899999988876543                112223333443333211100        


Q ss_pred             CcccccceEEEEecccCCCCCeeeeccccc-cCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCC
Q 008415          361 PKLVSITQSVLVKSGVHTSPPFNVLHLAYM-ENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDL  439 (566)
Q Consensus       361 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l  439 (566)
                           .+.            .+....+..+ ..++.|.+.++.+..++...         ...++++.+....++.++.+
T Consensus       139 -----~l~------------~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~---------~~~~~l~~~~~l~~n~l~~l  192 (242)
T d1xwdc1         139 -----NIH------------TIERNSFVGLSFESVILWLNKNGIQEIHNCA---------FNGTQLDELNLSDNNNLEEL  192 (242)
T ss_dssp             -----TCC------------EECTTSSTTSBSSCEEEECCSSCCCEECTTT---------TTTCCEEEEECTTCTTCCCC
T ss_pred             -----ccc------------cccccccccccccceeeeccccccccccccc---------ccchhhhccccccccccccc
Confidence                 010            0100112222 36677777776655443211         12345555554455567766


Q ss_pred             ch--hhccCCcceEeEeccc
Q 008415          440 TW--LVFVQNLKVLRIGDCY  457 (566)
Q Consensus       440 ~~--l~~l~~L~~L~L~~~~  457 (566)
                      +.  +..+++|++|+|+++.
T Consensus       193 ~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         193 PNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             CTTTTTTSCCCSEEECTTSC
T ss_pred             cHHHhcCCCCCCEEECCCCc
Confidence            54  5667777777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-14  Score=139.46  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=64.1

Q ss_pred             ccCcceEEEeccc--cceeeecccccccccCccCCCcccEEecccCcCCCC--CchhhccCCcceEeEecccCccccccc
Q 008415          390 MENLQKFELESCN--LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD--LTWLVFVQNLKVLRIGDCYDMEEIISV  465 (566)
Q Consensus       390 ~~~L~~L~l~~~~--l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~  465 (566)
                      .++|+.|++.+|.  +....+..       -...+++|++|++++|..+++  +..++++++|++|+|++|..+....- 
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~-------l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-  218 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLST-------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-  218 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHH-------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-
T ss_pred             ccccchhhhcccccccccccccc-------cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-
Confidence            3577778777753  22111100       012467888888888877763  34577788888888888876653221 


Q ss_pred             ccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCC
Q 008415          466 DKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKL  523 (566)
Q Consensus       466 ~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~l  523 (566)
                                 ..+..+|+|+.|++.+|-.-..+..-...+|+|+   + +|.+++.+
T Consensus       219 -----------~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         219 -----------LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             -----------GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             -----------HHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence                       1345678888888877622111111112356655   3 66777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=1.7e-13  Score=123.59  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=104.2

Q ss_pred             cccccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcc
Q 008415          196 EEWEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKAL  275 (566)
Q Consensus       196 ~~~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L  275 (566)
                      ..+.+++.|.+.++.+..++.+..+++|++|++++|++..+++  ++++++|++|++++| .+..+|.        ++++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~~--------l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--------LANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--------GTTC
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccc-ccccccc--------cccc
Confidence            3457899999999999999888999999999999999988875  899999999999999 8877653        6899


Q ss_pred             ccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          276 EKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       276 ~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                      ++|++|++++| ....++.  +..+++|+.|++++|.+..                +..+..+++|+.|.+..
T Consensus       106 ~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~----------------~~~l~~~~~L~~L~l~~  159 (199)
T d2omxa2         106 TNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISD----------------ISALSGLTSLQQLNFSS  159 (199)
T ss_dssp             TTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCC----------------CGGGTTCTTCSEEECCS
T ss_pred             ccccccccccc-ccccccc--cchhhhhHHhhhhhhhhcc----------------ccccccccccccccccc
Confidence            99999999999 6777766  8899999999999987643                34567777777777663

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.6e-13  Score=127.91  Aligned_cols=219  Identities=19%  Similarity=0.188  Sum_probs=164.8

Q ss_pred             EEEecCCccccCCCccccccccEEEeecCCcccccC--CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          181 FLVHAGVELTEAPKFEEWEGAKRVSLMGNGIRSLSE--IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      .+.+.+.+++.+|.. -...++.|++++|.++.++.  +..+++|+.|+++++.+..++...+..+..++.+....+..+
T Consensus        15 ~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            345556567777642 23678999999999999875  688999999999999999888887888999999988655477


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS  338 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  338 (566)
                      ..++..      .+.++++|++|++++| .+..++...++.+.+|+.+++.++.+..              .....++.+
T Consensus        94 ~~l~~~------~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l~l~~N~l~~--------------i~~~~f~~~  152 (284)
T d1ozna_          94 RSVDPA------TFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA--------------LPDDTFRDL  152 (284)
T ss_dssp             CCCCTT------TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC--------------CCTTTTTTC
T ss_pred             ccccch------hhcccccCCEEecCCc-ccccccccccchhcccchhhhccccccc--------------cChhHhccc
Confidence            777644      3799999999999999 7788777658889999999999998765              234457788


Q ss_pred             CCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCeeeeccccccCcceEEEeccccceeeecccccccccC
Q 008415          339 KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPFNVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLF  418 (566)
Q Consensus       339 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~  418 (566)
                      ++|+.|+++.+....++.  .....+++|+.+.+.. .. ........+..+++|+.|++++|.+..++.+.        
T Consensus       153 ~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~l~l~~-N~-l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~--------  220 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQ-NR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--------  220 (284)
T ss_dssp             TTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCS-SC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--------
T ss_pred             cchhhcccccCcccccch--hhhccccccchhhhhh-cc-ccccChhHhhhhhhcccccccccccccccccc--------
Confidence            899999998765443322  1223347888999886 32 23333335788899999999999955443321        


Q ss_pred             ccCCCcccEEecccC
Q 008415          419 QSGFRSLNTVSVHYC  433 (566)
Q Consensus       419 ~~~l~~L~~L~L~~c  433 (566)
                      ...+++|++|++++.
T Consensus       221 ~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         221 LAPLRALQYLRLNDN  235 (284)
T ss_dssp             HTTCTTCCEEECCSS
T ss_pred             cccccccCEEEecCC
Confidence            236789999999884

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3e-13  Score=111.35  Aligned_cols=103  Identities=20%  Similarity=0.250  Sum_probs=86.0

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEe
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYL  281 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L  281 (566)
                      |.|++++|+++.++.+..+++|+.|++++|.++.+|+. ++.+++|++|++++| .++.+|.        ++++++|++|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~~--------~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVDG--------VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--------GTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccCc--------cccccccCeE
Confidence            57888889888888888889999999999998888876 788999999999999 8877653        5888899999


Q ss_pred             cccCcccCCccch-hhhcCCCCCcEEEecCCCCcc
Q 008415          282 NLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       282 ~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      ++++| .++.+|. ..++.+++|++|++.+|.+..
T Consensus        71 ~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          71 LLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ECCCC-ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99998 7888774 237888899999998887654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7e-14  Score=133.55  Aligned_cols=185  Identities=20%  Similarity=0.148  Sum_probs=108.2

Q ss_pred             CCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-h
Q 008415          218 PTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-Q  295 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-~  295 (566)
                      ....+|+.|+++++.+.. ....++.++++|++|+|++| .+..      ..+..++++++|++|++++|..++.-.- .
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~------~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSD------PIVNTLAKNSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCH------HHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc-CCCc------HHHHHHhcCCCCcCccccccccccccccch
Confidence            445577888888775542 22334677788888888887 6542      2334466777888888888755653211 1


Q ss_pred             hhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCC-CCCceEEEEEcCccchhccccCCcccccceEEEEec
Q 008415          296 LISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGS-KHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKS  374 (566)
Q Consensus       296 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~  374 (566)
                      +...+++|++|++++|....            +......+... ++|+.|++.                          +
T Consensus       116 l~~~~~~L~~L~ls~c~~~~------------~~~~~~~~~~~~~~L~~L~l~--------------------------~  157 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFT------------EKHVQVAVAHVSETITQLNLS--------------------------G  157 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCC------------HHHHHHHHHHSCTTCCEEECC--------------------------S
T ss_pred             hhHHHHhccccccccccccc------------cccchhhhcccccccchhhhc--------------------------c
Confidence            13467788888887765432            11122222222 445555544                          3


Q ss_pred             ccC-CCCCeeeec-cccccCcceEEEeccc-cceeeecccccccccCccCCCcccEEecccCcCCCC--CchhhccCCcc
Q 008415          375 GVH-TSPPFNVLH-LAYMENLQKFELESCN-LEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKD--LTWLVFVQNLK  449 (566)
Q Consensus       375 ~~~-~~~~~~~~~-l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~  449 (566)
                       |. ...+..+.. ...+++|++|++++|. ++.-.+        .....+++|++|+|++|..+.+  +..++++|+|+
T Consensus       158 -~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~--------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         158 -YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             -CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             -cccccccccccccccccccccccccccccCCCchhh--------hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence             21 111111111 2456788888888876 543111        1223568888888888877764  33477888899


Q ss_pred             eEeEecc
Q 008415          450 VLRIGDC  456 (566)
Q Consensus       450 ~L~L~~~  456 (566)
                      .|++.+|
T Consensus       229 ~L~l~~~  235 (284)
T d2astb2         229 TLQVFGI  235 (284)
T ss_dssp             EEECTTS
T ss_pred             EEeeeCC
Confidence            9988887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-12  Score=118.95  Aligned_cols=230  Identities=16%  Similarity=0.156  Sum_probs=145.5

Q ss_pred             ccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCC
Q 008415          223 LVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSK  302 (566)
Q Consensus       223 Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~  302 (566)
                      .++++.++.+++.+|..+   .+++++|++++| .|+.+|...      +.++++|++|++++|.....+|.+.+..+++
T Consensus        10 ~~~i~c~~~~l~~iP~~l---~~~l~~L~Ls~n-~i~~l~~~~------f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGA------FSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SSEEEEESCSCSSCCSCS---CSCCSEEEEESC-CCCEECTTT------TTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CCEEEEeCCCCCCcCCCC---CCCCCEEECcCC-cCCccChhH------hhccchhhhhhhccccccceeeccccccccc
Confidence            367888888888888763   357899999999 888877643      6889999999999984444466655788999


Q ss_pred             CcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcCccchhccccCCcccccceEEEEecccCCCCCe
Q 008415          303 LEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRSSLGVQNFLKYPKLVSITQSVLVKSGVHTSPPF  382 (566)
Q Consensus       303 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  382 (566)
                      +++|.+..+....             ......+.++++|+.+.+..+.......                          
T Consensus        80 l~~l~~~~~n~l~-------------~~~~~~~~~l~~L~~l~l~~~~l~~~~~--------------------------  120 (242)
T d1xwdc1          80 LHEIRIEKANNLL-------------YINPEAFQNLPNLQYLLISNTGIKHLPD--------------------------  120 (242)
T ss_dssp             CCEEEEECCTTCC-------------EECTTSEECCTTCCEEEEESCCCCSCCC--------------------------
T ss_pred             ccccccccccccc-------------ccccccccccccccccccchhhhccccc--------------------------
Confidence            9999887644322             1344456778888888877432111000                          


Q ss_pred             eeeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCcCCCCCch-hhccCCcceEeEecccCccc
Q 008415          383 NVLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCRKAKDLTW-LVFVQNLKVLRIGDCYDMEE  461 (566)
Q Consensus       383 ~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~  461 (566)
                       ...+..+..+..+...++.+..++....     .  .....++.|.+.+ +.+..++. ....++++.+...++..++.
T Consensus       121 -~~~~~~l~~l~~~~~~n~~l~~i~~~~~-----~--~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~  191 (242)
T d1xwdc1         121 -VHKIHSLQKVLLDIQDNINIHTIERNSF-----V--GLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNNNLEE  191 (242)
T ss_dssp             -CTTTCBSSCEEEEEESCTTCCEECTTSS-----T--TSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEECTTCTTCCC
T ss_pred             -cccccccccccccccccccccccccccc-----c--cccccceeeeccc-ccccccccccccchhhhcccccccccccc
Confidence             0011222333333333333443322111     0  1224678888876 35555544 44566777776666667776


Q ss_pred             ccccccccccccccCCCCccccccceeeccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 008415          462 IISVDKLRDISVIIGSEHNFFAQLEYLSISWGTNLKSVYPNPLPFPKLKKIDVCHCPQLKKLPL  525 (566)
Q Consensus       462 i~~~~~~~~~~~~l~~~~~~f~~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~i~~C~~L~~lP~  525 (566)
                      +..            ..+..+++|++|+|.+. +++.++.  ..|.+|..|..-++.+|+.+|.
T Consensus       192 l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~--~~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         192 LPN------------DVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             CCT------------TTTTTSCCCSEEECTTS-CCCCCCS--SSCTTCCEEESSSEESSSCSCC
T ss_pred             ccH------------HHhcCCCCCCEEECCCC-cCCccCH--HHHcCCcccccCcCCCCCcCCC
Confidence            543            24678899999999885 4777764  3567777777667777888884

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.6e-13  Score=116.64  Aligned_cols=133  Identities=16%  Similarity=0.226  Sum_probs=102.7

Q ss_pred             CccccccccEEEeecCCcccccCC-CCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcch
Q 008415          194 KFEEWEGAKRVSLMGNGIRSLSEI-PTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQEL  272 (566)
Q Consensus       194 ~~~~~~~lr~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i  272 (566)
                      ......++|.|++++|++..++.. ..+++|++|++++|.+..++.  +..+++|++|++++| .++.+|..+      +
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~------~   83 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGL------D   83 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCH------H
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCccc------c
Confidence            334456789999999999888765 568899999999999888854  788999999999999 898877654      5


Q ss_pred             hccccCcEecccCcccCCccch-hhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEE
Q 008415          273 KALEKLRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWT  347 (566)
Q Consensus       273 ~~L~~L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~  347 (566)
                      ..+++|++|++++| .++.++. ..+..+++|++|++.+|.+...           .......+..+++|+.|+-.
T Consensus        84 ~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~-----------~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          84 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK-----------KHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS-----------TTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccceeccc-cccccccccccccccccchhhcCCCccccc-----------cchHHHHHHHCCCcCeeCCC
Confidence            78899999999999 7888875 2378899999999999877541           11123346677778776544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.7e-12  Score=106.81  Aligned_cols=101  Identities=22%  Similarity=0.266  Sum_probs=87.1

Q ss_pred             cEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCC
Q 008415          224 VTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKL  303 (566)
Q Consensus       224 r~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L  303 (566)
                      |+|++++|+++.++.  ++.+++|++|++++| .++.+|+.       ++.+++|++|++++| .++.+|.  ++.+++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~-------~~~l~~L~~L~l~~N-~i~~l~~--~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPA-------LAALRCLEVLQASDN-ALENVDG--VANLPRL   67 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGG-------GGGCTTCCEEECCSS-CCCCCGG--GTTCSSC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhh-------hhhhhcccccccccc-cccccCc--ccccccc
Confidence            789999999998875  799999999999999 99877654       589999999999999 8999986  9999999


Q ss_pred             cEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          304 EVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       304 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      ++|++.+|.+...             ..+..++.+++|+.|+++++.
T Consensus        68 ~~L~l~~N~i~~~-------------~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          68 QELLLCNNRLQQS-------------AAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CEEECCSSCCCSS-------------STTGGGGGCTTCCEEECTTSG
T ss_pred             CeEECCCCccCCC-------------CCchhhcCCCCCCEEECCCCc
Confidence            9999999988641             245667888999998887543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7e-13  Score=114.75  Aligned_cols=114  Identities=19%  Similarity=0.164  Sum_probs=95.2

Q ss_pred             cccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCcc
Q 008415          213 SLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSII  292 (566)
Q Consensus       213 ~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l  292 (566)
                      ..+.+..+.++|.|++++|++..++.. +..+++|++|+|++| .|+.++.        +..+++|++|++++| .++.+
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I~~i~~~-~~~l~~L~~L~Ls~N-~i~~l~~--------~~~l~~L~~L~ls~N-~i~~l   78 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDN-EIRKLDG--------FPLLRRLKTLLVNNN-RICRI   78 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSS-CCCEECC--------CCCCSSCCEEECCSS-CCCEE
T ss_pred             hhHhccCcCcCcEEECCCCCCCccCcc-ccccccCCEEECCCC-CCCccCC--------cccCcchhhhhcccc-cccCC
Confidence            345566778999999999999999764 788999999999999 9988753        588999999999999 89999


Q ss_pred             chhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          293 PHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       293 P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      |.+++..+++|++|++.+|.+..             ...+..+..+++|+.|++..+.
T Consensus        79 ~~~~~~~l~~L~~L~L~~N~i~~-------------~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          79 GEGLDQALPDLTELILTNNSLVE-------------LGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CSCHHHHCTTCCEEECCSCCCCC-------------GGGGGGGGGCTTCCEEECCSSG
T ss_pred             Cccccccccccccceeccccccc-------------cccccccccccccchhhcCCCc
Confidence            98756789999999999998764             1345667888899988888654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=1e-11  Score=110.85  Aligned_cols=124  Identities=23%  Similarity=0.253  Sum_probs=90.5

Q ss_pred             EEecCCccccCCCccccccccEEEeecCCccc-cc--CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCC
Q 008415          182 LVHAGVELTEAPKFEEWEGAKRVSLMGNGIRS-LS--EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISL  258 (566)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~lr~Lsl~~~~~~~-l~--~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i  258 (566)
                      +...+.++..+|..- ...+++|.+++|.+.. ++  .+..+++|+.|++++|.+..++...+..+++|++|+|++| .+
T Consensus        13 v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l   90 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KI   90 (192)
T ss_dssp             EECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CC
T ss_pred             EEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cc
Confidence            445556666666422 2577888888887764 32  3466788888888888777777666778888888888888 88


Q ss_pred             ccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          259 RKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       259 ~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +.+|...      +.++++|++|+|++| .++.+|.+++..+++|++|++.++...
T Consensus        91 ~~l~~~~------F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          91 KEISNKM------FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEECSSS------STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCHHH------HhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence            7777544      678888888888888 788887776778888888888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=1.9e-11  Score=109.09  Aligned_cols=124  Identities=19%  Similarity=0.299  Sum_probs=103.4

Q ss_pred             cEEEeecCCcccccCCCCCCCccEEEecCCcccc-cchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          202 KRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEE-ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       202 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~-lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      +++..+++++..+|... .+++++|++++|.+.. ++...|+++++|+.|+|++| .+..++...      +..+++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~------~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA------FEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT------TTTCTTCCE
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccc------cccccccce
Confidence            46778888888888532 3799999999999974 65666899999999999999 898776544      789999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                      |++++| +++.+|.+++.++++|++|++.+|.+..              .....+..+++|+.+++..
T Consensus        83 L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~--------------i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          83 LQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISC--------------VMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             EECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCE--------------ECTTSSTTCTTCCEEECTT
T ss_pred             eeeccc-cccccCHHHHhCCCcccccccCCccccc--------------cCHHHhcCCcccccccccc
Confidence            999999 8999998778999999999999998865              2344567788888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=3.6e-12  Score=114.20  Aligned_cols=105  Identities=26%  Similarity=0.308  Sum_probs=58.8

Q ss_pred             cccccEEEeecCCcccccCCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhcccc
Q 008415          198 WEGAKRVSLMGNGIRSLSEIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEK  277 (566)
Q Consensus       198 ~~~lr~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~  277 (566)
                      +.++++|++++|.+..++.+..+++|++|++++|.+..+|.. +..++.|++|++++| .++.++.        +.++++
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N-~i~~l~~--------~~~l~~  116 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLSG--------IEKLVN  116 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE-ECCCHHH--------HHHHHH
T ss_pred             ccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc-ccccccc--------cccccc
Confidence            345566666666665555555556666666666655555543 344455666666666 5554331        455566


Q ss_pred             CcEecccCcccCCccch-hhhcCCCCCcEEEecCCCC
Q 008415          278 LRYLNLDYTRFLSIIPH-QLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       278 L~~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~  313 (566)
                      |++|++++| .++.++. ..+..+++|++|++.+|++
T Consensus       117 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccc-hhccccccccccCCCccceeecCCCcc
Confidence            666666666 5555542 1255566666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.4e-09  Score=91.41  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             EEEeecCCccccc-CCCCCCCccEEEecCC-cccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcE
Q 008415          203 RVSLMGNGIRSLS-EIPTCPRLVTLLLGGN-RIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRY  280 (566)
Q Consensus       203 ~Lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~-~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~  280 (566)
                      .+...++...+.+ .+..+++|+.|.+.++ .++.++...|.++++|+.|++++| .|+.++...      +..+++|++
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~------f~~l~~L~~   84 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA------FHFTPRLSR   84 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG------GGSCSCCCE
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccc------ccccccccc
Confidence            3555555555544 4567889999999876 588898877999999999999999 999887544      789999999


Q ss_pred             ecccCcccCCccchhhhcCCCCCcEEEecCCCCc
Q 008415          281 LNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       281 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      |+|++| .++.+|.+ +....+|++|++.+|...
T Consensus        85 L~Ls~N-~l~~l~~~-~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFN-ALESLSWK-TVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSS-CCSCCCST-TTCSCCCCEEECCSSCCC
T ss_pred             eeccCC-CCcccChh-hhccccccccccCCCccc
Confidence            999999 89999998 444557999999988764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.90  E-value=5.8e-11  Score=106.16  Aligned_cols=124  Identities=24%  Similarity=0.268  Sum_probs=97.3

Q ss_pred             cccEEEeecC--Cccccc-CCCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccc
Q 008415          200 GAKRVSLMGN--GIRSLS-EIPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALE  276 (566)
Q Consensus       200 ~lr~Lsl~~~--~~~~l~-~~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~  276 (566)
                      ..+.+.+.+.  .++.++ .+..+++|+.|++++|.+..++.  +..+++|++|+|++| .++.+|..       ...++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~-------~~~~~   93 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIENL-------DAVAD   93 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSSH-------HHHHH
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccc-cccccccc-------ccccc
Confidence            3444555443  344443 35678999999999999998864  889999999999999 88877643       35667


Q ss_pred             cCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEc
Q 008415          277 KLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFR  349 (566)
Q Consensus       277 ~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~  349 (566)
                      +|++|++++| .++.++.  +..+++|++|++++|.+..             ...+..++.+++|+.|+++++
T Consensus        94 ~L~~L~l~~N-~i~~l~~--~~~l~~L~~L~L~~N~i~~-------------~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          94 TLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITN-------------WGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HCCEEECSEE-ECCCHHH--HHHHHHSSEEEESEEECCC-------------HHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccccc-ccccccc--ccccccccccccccchhcc-------------ccccccccCCCccceeecCCC
Confidence            8999999999 8999876  8899999999999988754             134567899999999999854

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.6e-10  Score=113.24  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             cccEEEeecCCcccc---cCCCCCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCCCCCccccccccccCcc
Q 008415          200 GAKRVSLMGNGIRSL---SEIPTCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQE  271 (566)
Q Consensus       200 ~lr~Lsl~~~~~~~l---~~~~~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~  271 (566)
                      +++.|+++++++.+.   .-...++++++|.|.+|.++.     +.. ++..+++|++|||++| .|+..+  +..+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N-~i~~~~--~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSN-ELGDVG--VHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTC-CCHHHH--HHHHHHT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCC-cCChHH--HHHHHHH
Confidence            567788888887652   123567888888888887652     233 2677888888888888 775311  1111222


Q ss_pred             hh-ccccCcEecccCcccCCc-----cchhhhcCCCCCcEEEecCCCCc
Q 008415          272 LK-ALEKLRYLNLDYTRFLSI-----IPHQLISGFSKLEVLRLFGCGFW  314 (566)
Q Consensus       272 i~-~L~~L~~L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~~  314 (566)
                      +. ...+|++|++++| .++.     ++.. +..+++|++|++.+|.+.
T Consensus        79 l~~~~~~L~~L~L~~n-~it~~~~~~l~~~-l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNC-CLTGAGCGVLSST-LRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCSTTCCCCEEECTTS-CCBGGGHHHHHHH-TTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCCEEECCCC-Cccccccccccch-hhccccccccccccccch
Confidence            22 2246888888888 6654     3343 677888888888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.6e-08  Score=86.12  Aligned_cols=91  Identities=15%  Similarity=0.029  Sum_probs=77.1

Q ss_pred             CCCCCCccEEEecCCcccccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhh
Q 008415          217 IPTCPRLVTLLLGGNRIEEITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQL  296 (566)
Q Consensus       217 ~~~~~~Lr~L~l~~~~l~~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~  296 (566)
                      ...+....++...++.+.+.|.. +..+++|+.|+++++..++.++...      +.++++|+.|++++| +|+.++.++
T Consensus         4 ~C~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~------f~~l~~L~~L~Ls~N-~l~~i~~~~   75 (156)
T d2ifga3           4 ACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRD------LRGLGELRNLTIVKS-GLRFVAPDA   75 (156)
T ss_dssp             SSCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG------SCSCCCCSEEECCSS-CCCEECTTG
T ss_pred             CCCcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchh------hccccccCcceeecc-ccCCccccc
Confidence            34455667788888888888887 7889999999998773588887543      789999999999999 899998777


Q ss_pred             hcCCCCCcEEEecCCCCcc
Q 008415          297 ISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       297 i~~L~~L~~L~l~~~~~~~  315 (566)
                      +..+++|++|++++|.+..
T Consensus        76 f~~l~~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALES   94 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSC
T ss_pred             ccccccccceeccCCCCcc
Confidence            9999999999999998865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.31  E-value=3.6e-07  Score=88.57  Aligned_cols=85  Identities=19%  Similarity=0.172  Sum_probs=38.3

Q ss_pred             ccccEEEeecCCccc-----c-cCCCCCCCccEEEecCCccccc----ch------HHHhcCccCCEEecCCCCCCcccc
Q 008415          199 EGAKRVSLMGNGIRS-----L-SEIPTCPRLVTLLLGGNRIEEI----TD------GFFQSMSTLRVLSLRINISLRKLP  262 (566)
Q Consensus       199 ~~lr~Lsl~~~~~~~-----l-~~~~~~~~Lr~L~l~~~~l~~l----p~------~~~~~l~~Lr~L~L~~~~~i~~lp  262 (566)
                      ..++.|++++|.+..     + ..+...++|+.|.+.++.....    +.      ..+..+++|+.|+|++| .+..-.
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~  109 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTA  109 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTT
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-cccccc
Confidence            455556665554422     1 1234455666666654422111    10      11344555666666655 443211


Q ss_pred             ccccccCcchhccccCcEecccCc
Q 008415          263 SGIRGLPQELKALEKLRYLNLDYT  286 (566)
Q Consensus       263 ~~i~~LP~~i~~L~~L~~L~L~~~  286 (566)
                        +..+...+...++|++|++++|
T Consensus       110 --~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         110 --QEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             --HHHHHHHHHHCTTCCEEECCSS
T ss_pred             --ccchhhhhcccccchheecccc
Confidence              1223333444555666666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.25  E-value=1.7e-07  Score=90.93  Aligned_cols=226  Identities=15%  Similarity=0.154  Sum_probs=121.7

Q ss_pred             CCCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCCCCCcccc----ccccccCcchhccccCcEecccCccc
Q 008415          218 PTCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRINISLRKLP----SGIRGLPQELKALEKLRYLNLDYTRF  288 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp----~~i~~LP~~i~~L~~L~~L~L~~~~~  288 (566)
                      .....|+.|++++|.+..     +... +...++|+.|+++++ ......    ..+..+...+...++|+.|++++| .
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~-l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~  104 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A  104 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHH-HHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCccccccccc-c
Confidence            557889999999996642     2222 567799999999987 554332    222334445667789999999999 6


Q ss_pred             CCc-----cchhhhcCCCCCcEEEecCCCCcccccccccccccC--ccchHhhhcCCCCCceEEEEEcCc--cchhcccc
Q 008415          289 LSI-----IPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCED--AEPLMKELLGSKHLNVLSWTFRSS--LGVQNFLK  359 (566)
Q Consensus       289 l~~-----lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~~L~i~~~~~--~~~~~~~~  359 (566)
                      +..     +... +...++|++|++++|.+...   ........  ...........+.|+.+.+..+..  .....+..
T Consensus       105 i~~~~~~~l~~~-l~~~~~L~~L~l~~n~l~~~---~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         105 FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQ---AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHH---HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             cccccccchhhh-hcccccchheeccccccccc---ccccccccccccccccccccCcccceeecccccccccccccccc
Confidence            654     3333 56789999999998876431   00000000  000011123456677777664322  12222322


Q ss_pred             CCcccccceEEEEecccCCCCCe---e--eeccccccCcceEEEeccccceeeecccccccccCccCCCcccEEecccCc
Q 008415          360 YPKLVSITQSVLVKSGVHTSPPF---N--VLHLAYMENLQKFELESCNLEEMKIDSTEEVKKLFQSGFRSLNTVSVHYCR  434 (566)
Q Consensus       360 ~~~~~~~L~~L~l~~~~~~~~~~---~--~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  434 (566)
                      .......++.|.+.. +. ....   .  ...+...++|+.|++++|.+........    .......++|++|+|++|.
T Consensus       181 ~l~~~~~L~~L~L~~-n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L----~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQ-NG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHCTTCCEEECCS-SC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----HHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhhhhccccccc-cc-ccccccccchhhhhcchhhhcccccccccccccccccc----cccccccccchhhhhhcCc
Confidence            233345677777765 32 1111   0  1125556777777777766221100000    0111245677777777763


Q ss_pred             CCCCC--ch----hhc--cCCcceEeEeccc
Q 008415          435 KAKDL--TW----LVF--VQNLKVLRIGDCY  457 (566)
Q Consensus       435 ~l~~l--~~----l~~--l~~L~~L~L~~~~  457 (566)
                       +.+-  ..    +..  .+.|++|+|++|.
T Consensus       255 -i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         255 -LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             -CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             -cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence             3221  11    222  3457777777664

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.02  E-value=1.5e-06  Score=81.05  Aligned_cols=85  Identities=9%  Similarity=-0.099  Sum_probs=60.6

Q ss_pred             ecchhhhhhhhhhhhcccccchhchHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH--hccccccCcchhhHHHHHHHH
Q 008415            7 TFLPADLFDRTSNCVGEQAKYVWGLEKNLRVLETELHKLTRARADLKTKV---EIEE--QRPRTRRTNQVAGWLEDVQKL   81 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~L~~i~~~i~~k~---~la~--~~g~l~~~~~~~~W~~~~~~l   81 (566)
                      +.+..--.+++|++|+.+|+.....+           +.++++++|+++|   |+|.  +|+.+ ..++.++|.+..+.+
T Consensus       180 ~~l~~L~~~ea~~Lf~~~~~~~~~~~-----------~~~~~~~~iv~~c~GlPLAl~~ig~~l-~~k~~~~~~~~~~~L  247 (277)
T d2a5yb3         180 IEVTSLEIDECYDFLEAYGMPMPVGE-----------KEEDVLNKTIELSSGNPATLMMFFKSC-EPKTFEKMAQLNNKL  247 (277)
T ss_dssp             EECCCCCHHHHHHHHHHTSCCCC--C-----------HHHHHHHHHHHHHTTCHHHHHHHHTTC-CSSSHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHhCCccCch-----------hhHHHHHHHHHHhCCCHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence            34444345899999999997643322           2256677778888   8884  45644 567889999998888


Q ss_pred             HHhh-------HHHhhhchHHHHHHHhccc
Q 008415           82 ETEY-------TELERDRAQEMDRLCLGGL  104 (566)
Q Consensus        82 ~~~~-------~~~~~~~L~~~lK~Cf~ly  104 (566)
                      ++..       ...+|++||.++|+|| -|
T Consensus       248 ~~~~~~~v~~il~~sY~~L~~~lk~c~-~~  276 (277)
T d2a5yb3         248 ESRGLVGVECITPYSYKSLAMALQRCV-EV  276 (277)
T ss_dssp             HHHCSSTTCCCSSSSSSSHHHHHHHHH-HT
T ss_pred             hcCcHHHHHHHHHHHHhcccHHHHHHH-Hh
Confidence            7632       3477999999999999 54

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.1e-07  Score=75.39  Aligned_cols=71  Identities=24%  Similarity=0.113  Sum_probs=55.8

Q ss_pred             HHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccchhhhcCCCCCcEEEecCCCCcc
Q 008415          239 GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPHQLISGFSKLEVLRLFGCGFWV  315 (566)
Q Consensus       239 ~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~  315 (566)
                      .++.+++.|++|+|++| .|+.++.    ++..+..+++|++|++++| .++.++.-...+..+|++|++.+|++..
T Consensus        59 ~~~~~~~~L~~L~Ls~N-~i~~l~~----~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNN-RLYRLDD----MSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSS-CCCCCSG----GGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCc-cccCCch----hHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCc
Confidence            34677999999999999 8987643    3344678999999999999 8999887224455679999999988754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=8.8e-06  Score=69.05  Aligned_cols=83  Identities=29%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             CCCCCccEEEecCCcccccch--HHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCccch-
Q 008415          218 PTCPRLVTLLLGGNRIEEITD--GFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSIIPH-  294 (566)
Q Consensus       218 ~~~~~Lr~L~l~~~~l~~lp~--~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lP~-  294 (566)
                      ..+++|++|++++|.++.++.  ..+..+++|++|+|++| .|+.+++-.      .....+|+.|++++| .+..... 
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~------~l~~~~L~~L~L~~N-pl~~~~~~  133 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD------KIKGLKLEELWLDGN-SLSDTFRD  133 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHH------HHTTCCCSSCCCTTS-TTSSSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhh------hhhccccceeecCCC-CcCcCccc
Confidence            468999999999998887642  34788999999999999 998877521      233457999999999 5654321 


Q ss_pred             ------hhhcCCCCCcEEEe
Q 008415          295 ------QLISGFSKLEVLRL  308 (566)
Q Consensus       295 ------~~i~~L~~L~~L~l  308 (566)
                            .++..+++|+.||-
T Consensus       134 ~~~y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEETT
T ss_pred             chhHHHHHHHHCCCCCEECc
Confidence                  33677899998874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=2.9e-05  Score=77.42  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=81.6

Q ss_pred             CCccEEEecCCcccccc-hHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCcc-----ch
Q 008415          221 PRLVTLLLGGNRIEEIT-DGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSII-----PH  294 (566)
Q Consensus       221 ~~Lr~L~l~~~~l~~lp-~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l-----P~  294 (566)
                      .+|++|+++++++.... ...+..+++||+|+|++| .++.-  ++..++..+..+++|++|||++| .++..     ..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~--~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEA--RCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHH--HHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHH--HHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH
Confidence            47899999999886532 334778999999999999 88632  22345566788999999999999 67532     22


Q ss_pred             hhhc-CCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEEcC
Q 008415          295 QLIS-GFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTFRS  350 (566)
Q Consensus       295 ~~i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~  350 (566)
                      . +. ...+|++|++.+|.+...          ........+..+++|+.|+++.+.
T Consensus        78 ~-l~~~~~~L~~L~L~~n~it~~----------~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          78 G-LQTPSCKIQKLSLQNCCLTGA----------GCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             T-TCSTTCCCCEEECTTSCCBGG----------GHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             H-HhcCCCCCCEEECCCCCcccc----------ccccccchhhcccccccccccccc
Confidence            2 22 235899999999987541          011234567888999999987643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.05  E-value=0.002  Score=54.09  Aligned_cols=88  Identities=15%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             CCCccEEEecCC-ccc-----ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc--
Q 008415          220 CPRLVTLLLGGN-RIE-----EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI--  291 (566)
Q Consensus       220 ~~~Lr~L~l~~~-~l~-----~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~--  291 (566)
                      .+.|+.|+++++ .+.     .+-.. +...+.|++|+|++| .+..-  +...+-..+...+.|++|++++| .+..  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~-L~~n~~L~~L~Ls~n-~l~~~--~~~~la~~L~~n~~L~~L~L~~n-~i~~~g   88 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDS--EARGLIELIETSPSLRVLNVESN-FLTPEL   88 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHH--HHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHH-HhhCCccceeecccc-ccchh--HHHHHhhhhhhcccccceeeehh-hcchHH
Confidence            456666666653 232     12122 455566777777776 55421  11222233444566777777776 4543  


Q ss_pred             ---cchhhhcCCCCCcEEEecCCCC
Q 008415          292 ---IPHQLISGFSKLEVLRLFGCGF  313 (566)
Q Consensus       292 ---lP~~~i~~L~~L~~L~l~~~~~  313 (566)
                         +-.. +..-++|++|++.++..
T Consensus        89 ~~~l~~a-L~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          89 LARLLRS-TLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHH-TTTTCCCSEEECCCCSS
T ss_pred             HHHHHHH-HHhCCcCCEEECCCCcC
Confidence               1122 45556677777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.84  E-value=0.0044  Score=51.91  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=73.9

Q ss_pred             ccccEEEeecC-Cccc--c----cCCCCCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCCCCCcccccccc
Q 008415          199 EGAKRVSLMGN-GIRS--L----SEIPTCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRINISLRKLPSGIR  266 (566)
Q Consensus       199 ~~lr~Lsl~~~-~~~~--l----~~~~~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~  266 (566)
                      +.++.|++.++ .+..  +    ..+...++|++|++++|.+..     +.. .+...+.|+.|+|++| .+..  .++.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~-~L~~n~~L~~L~L~~n-~i~~--~g~~   90 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESN-FLTP--ELLA   90 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSS-BCCH--HHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhh-hhhhcccccceeeehh-hcch--HHHH
Confidence            58999999864 3432  1    134677899999999997652     323 3677899999999999 7764  1112


Q ss_pred             ccCcchhccccCcEecccCcccCCccch-------hhhcCCCCCcEEEecCCC
Q 008415          267 GLPQELKALEKLRYLNLDYTRFLSIIPH-------QLISGFSKLEVLRLFGCG  312 (566)
Q Consensus       267 ~LP~~i~~L~~L~~L~L~~~~~l~~lP~-------~~i~~L~~L~~L~l~~~~  312 (566)
                      .+-..+..-+.|++|+++++ .+..+..       .++..-++|+.|++..+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            23334566688999999988 4544432       125567888888886553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.66  E-value=0.012  Score=48.88  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=16.0

Q ss_pred             CCCCccEEEecCCcccc-----cchHHHhcCccCCEEecCCC
Q 008415          219 TCPRLVTLLLGGNRIEE-----ITDGFFQSMSTLRVLSLRIN  255 (566)
Q Consensus       219 ~~~~Lr~L~l~~~~l~~-----lp~~~~~~l~~Lr~L~L~~~  255 (566)
                      ..++|+.|++++|.+..     +-. .+...+.|+.|+++++
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSS
T ss_pred             cCCccCeeeccCCcccHHHHHHHHH-HHhhcccchhhhhccc
Confidence            44555555555554321     111 1334445555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.47  E-value=0.0085  Score=49.97  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=62.7

Q ss_pred             CCCCccEEEecCC-ccc-----ccchHHHhcCccCCEEecCCCCCCccccccccccCcchhccccCcEecccCcccCCc-
Q 008415          219 TCPRLVTLLLGGN-RIE-----EITDGFFQSMSTLRVLSLRINISLRKLPSGIRGLPQELKALEKLRYLNLDYTRFLSI-  291 (566)
Q Consensus       219 ~~~~Lr~L~l~~~-~l~-----~lp~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-  291 (566)
                      ..+.|+.|.+.++ .+.     .+-.. +...++|+.|++++| .+..-  +...+-..+...++|+.+++++| .+.. 
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~a-l~~n~~L~~L~Ls~n-~l~~~--~~~~L~~~l~~~~~l~~l~l~~~-~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDP--VAFALAEMLKVNNTLKSLNVESN-FISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHH--HHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHH-HhcCCccCeeeccCC-cccHH--HHHHHHHHHhhcccchhhhhccc-cccch
Confidence            4567777777763 332     12222 456778888888888 66531  11223333456677888888877 4432 


Q ss_pred             ----cchhhhcCCCCCcEEEecCCCCcccccccccccccCccchHhhhcCCCCCceEEEEE
Q 008415          292 ----IPHQLISGFSKLEVLRLFGCGFWVVTEEEGNVLCEDAEPLMKELLGSKHLNVLSWTF  348 (566)
Q Consensus       292 ----lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~  348 (566)
                          +-.. +...++|+.+++..+.....        ..........+...++|+.|++..
T Consensus        90 g~~~l~~~-l~~~~~L~~l~L~l~~n~i~--------~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          90 GILALVEA-LQSNTSLIELRIDNQSQPLG--------NNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHG-GGGCSSCCEEECCCCSSCCC--------HHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hHHHHHHH-HHhCccccEEeeccCCCcCc--------HHHHHHHHHHHHhCCCcCEEeCcC
Confidence                2232 56677787766654332110        000112333455566677776654