Citrus Sinensis ID: 008427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
MDLKSLPSSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHccccccc
cccEEEccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEcccccc
mdlkslpsskestkadenrrssnyhpsiwgdhfinvssndkypnaeVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNShvnsncdvnydhnnDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQvehsleiplhrgmprleARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILgvyfepkysITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEmedkpvnkeppgcmHYAKEAIKGLVRAYFVEAkwfnakyvptfeeymenstmssgypMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYkveqergdapssvECYMQQYGVSEEEACNKIKEMVEIEWMNineeiqdpnhpplqwllpslNLARMMVVLYQngdgytnssgktkDRIAsllvdplpm
mdlkslpsskestkadenrrssnyhpsiwgdHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVeqergdapssveCYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGdgytnssgktkdriasllvdplpm
MDLKSLPSSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIfkkfkdekgefkAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM
**************************SIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEM*********PGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKV**********VECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGY*********************
************************HPSIWGDHFINVSSN**********RFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLP******ANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM
*********************SNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYK**********SVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM
*****L**********ENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM
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MDLKSLPSSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPxxxxxxxxxxxxxxxxxxxxxNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.945 0.960 0.513 1e-166
F6M8H4559 Probable sesquiterpene sy N/A no 0.982 0.994 0.493 1e-158
F6M8H7562 Probable sesquiterpene sy N/A no 0.978 0.985 0.490 1e-157
B5A435559 Sesquiterpene synthase OS N/A no 0.982 0.994 0.493 1e-157
Q43714555 (+)-delta-cadinene syntha N/A no 0.961 0.980 0.495 1e-156
Q6Q3H2556 Valencene synthase OS=Vit no no 0.980 0.998 0.491 1e-156
D0VMR6547 Delta-guaiene synthase 1 N/A no 0.941 0.974 0.485 1e-155
E3W207559 Sesquiterpene synthase OS N/A no 0.982 0.994 0.495 1e-155
F6M8H5562 Probable sesquiterpene sy N/A no 0.982 0.989 0.489 1e-155
D0VMR7547 Delta-guaiene synthase 2 N/A no 0.941 0.974 0.478 1e-155
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  586 bits (1511), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/551 (51%), Positives = 396/551 (71%), Gaps = 16/551 (2%)

Query: 18  NRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS--NNTAWKTIEEI 75
            RR +N+HPSIWGDHF++ +S     +  +++  + LK EV K+LM+  +++A K +   
Sbjct: 21  GRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAADDDSAQKLL--- 77

Query: 76  VTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHG 135
             L+D +QRLGVAYHFE+EI E L+ +++  V S          D+YT +LRFRLLRQ G
Sbjct: 78  --LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYTASLRFRLLRQQG 128

Query: 136 YKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSL 195
           Y VS D+F  FKD +G FK  L++D RG+L LYEA++ RV GE+IL+EA  F+  HL+S 
Sbjct: 129 YHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSA 188

Query: 196 LPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQE 255
             H S  LA QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L+LAKLDFNLLQ+
Sbjct: 189 TKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALLKLAKLDFNLLQK 247

Query: 256 LHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIAS 315
           LH++ELS+IS WWKD+DFA KLPFARDR+VECYFWILGVYFEP++   R+ +TK+IA+ S
Sbjct: 248 LHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTS 307

Query: 316 VIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEP 375
           +IDDIYDVYGTLEEL+LFT A+ERW+++A ++LP+YM+VCY ALL V  E+E++   +  
Sbjct: 308 IIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGR 367

Query: 376 PGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDM 435
              ++YAKEA+K  VRAY+ EAKW   + +PT EEYM  + ++S Y MLA  + VG+ D 
Sbjct: 368 SYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGD- 426

Query: 436 AITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEA 495
           A+TK++ DW  S PKI+R S+++ RL DD+  +K EQ+RG   S+VECYM+Q+G SE+E 
Sbjct: 427 AVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQHGASEQET 486

Query: 496 CNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDR 555
            N+  + V   W +INEE   P   P+  L+  LNLAR++ V+Y+N DGYT+     KD 
Sbjct: 487 PNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDF 546

Query: 556 IASLLVDPLPM 566
           + S+L+DP+P+
Sbjct: 547 VTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|D0VMR6|DGUS1_AQUCR Delta-guaiene synthase 1 OS=Aquilaria crassna GN=C2 PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|D0VMR7|DGUS2_AQUCR Delta-guaiene synthase 2 OS=Aquilaria crassna GN=C3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.945 0.960 0.515 1e-166
147856860557 hypothetical protein VITISV_030783 [Viti 0.945 0.960 0.515 1e-165
147828675557 hypothetical protein VITISV_013313 [Viti 0.945 0.960 0.513 1e-165
75223414557 RecName: Full=(-)-germacrene D synthase 0.945 0.960 0.513 1e-164
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.948 0.964 0.508 1e-164
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.945 0.960 0.509 1e-162
392306394556 sesquiterpene synthase [Toona sinensis] 0.971 0.989 0.517 1e-162
315134533556 sesquiterpene synthase [Toona sinensis] 0.971 0.989 0.517 1e-161
380751740567 terpene synthase [Camellia sinensis] 0.966 0.964 0.499 1e-161
224133712553 predicted protein [Populus trichocarpa] 0.943 0.965 0.516 1e-161
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/551 (51%), Positives = 398/551 (72%), Gaps = 16/551 (2%)

Query: 18  NRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS--NNTAWKTIEEI 75
            RR +N+HPSIWGDHF++ +S     +  +++  + LK EV K+LM+  +++A K +   
Sbjct: 21  GRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAADDDSAQKLL--- 77

Query: 76  VTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHG 135
             L+D +QRLGVAYHFE+EI E L+ +++  V S          D+YT +LRFRLLRQ G
Sbjct: 78  --LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYTASLRFRLLRQQG 128

Query: 136 YKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSL 195
           Y VS D+F  FKD +G FK  L++D RG+L LYEA++ RV GE+IL+EA  F+  HL+S 
Sbjct: 129 YHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSA 188

Query: 196 LPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQE 255
             H S  LA QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L+LAKLDFNLLQ+
Sbjct: 189 TKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALLKLAKLDFNLLQK 247

Query: 256 LHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIAS 315
           LH++ELS+IS WWKD+DFA KLPFARDR+VECYFWILGVYFEP++   R+ +TK+IA+ S
Sbjct: 248 LHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTS 307

Query: 316 VIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEP 375
           +IDDIYDVYGTLEEL+LFT A+ERW+++A ++LP+YM+VCY ALL V  E+E++   +  
Sbjct: 308 IIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGR 367

Query: 376 PGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDM 435
              ++YAKEA+K  VRAY+ EAKW   + +PT EEYM  + ++S Y MLA  + VG+ D 
Sbjct: 368 SYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGD- 426

Query: 436 AITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEEA 495
           A+TK++ DW  S PKI+R S+++ RL DD+ ++K EQ+RG   S+VECYM+Q+G SE+E 
Sbjct: 427 AVTKESFDWIFSKPKIVRASAIVCRLMDDMVSHKFEQKRGHVASAVECYMKQHGASEQET 486

Query: 496 CNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDR 555
            N+  + V   W +INEE   P   P+  L+  LNLAR++ V+Y+N DGYT+S    KD 
Sbjct: 487 HNEFHKQVRDAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHSGTVLKDF 546

Query: 556 IASLLVDPLPM 566
           + S+L+DP+P+
Sbjct: 547 VTSMLIDPVPI 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|380751740|gb|AFE56211.1| terpene synthase [Camellia sinensis] Back     alignment and taxonomy information
>gi|224133712|ref|XP_002321642.1| predicted protein [Populus trichocarpa] gi|222868638|gb|EEF05769.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.982 0.994 0.483 2.3e-142
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.941 0.974 0.470 5.8e-137
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.941 0.974 0.469 3.2e-136
UNIPROTKB|D0VMR7547 C3 "Delta-guaiene synthase 2" 0.941 0.974 0.463 5.2e-136
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.938 0.965 0.480 1.2e-131
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.984 0.975 0.452 6.6e-129
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.962 0.981 0.438 1e-123
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.964 0.968 0.420 1.5e-115
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.954 0.972 0.421 1e-114
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.941 0.962 0.424 1.2e-113
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
 Identities = 273/565 (48%), Positives = 389/565 (68%)

Query:     1 MDLKSLPSSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEK 60
             M+ + +P S      + +R  +N+ PSIWGD FIN +  D+   A+ E++ E LK +V +
Sbjct:     1 MENQKVPISSVPNLKELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRR 60

Query:    61 LLMSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIY-NSHVNSNCDVNYDHNN 119
              L +  T  K ++++  ++D  QRLG+AYHFENEI+E L+ IY +++V +NC   +  ++
Sbjct:    61 ELAA--TVDKPLQQL-NIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNC---FQGSH 114

Query:   120 DLYTVALRFRLLRQHGYKVSADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGEN 179
             DLY+VAL FRLLRQ GYKVS D+              L  DA+GLL LYEA++L V GE 
Sbjct:   115 DLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEE 174

Query:   180 ILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRN 239
             +L++A EF++  L+S++ H++  LA QV H+L  PL +G+PRLEA  +  IYEA +S  N
Sbjct:   175 MLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDS-HN 233

Query:   240 ELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPK 299
             + +L+LAKLDFNLLQ LH++ELS+++RWWK +DFA K PFARDRLVE YFW+LGVYFEP+
Sbjct:   234 KALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQ 293

Query:   300 YSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFAL 359
             YS+ RK + K+  + S IDDIYD YGTL+EL+LFT A++RW+V + ++LP+YM+ CY ++
Sbjct:   294 YSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSI 353

Query:   360 LDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSS 419
             LDV  E+E++  N+     MHYAKE +K LV  Y  EAKW + KYVPTFEEYM  + ++S
Sbjct:   354 LDVYNEIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTS 413

Query:   420 GYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPS 479
             GY  L   + +G+ ++A +K+A DW  S P +I  S  + RL DD+R++K EQERG   S
Sbjct:   414 GYTFLTTISYLGMGEIA-SKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVAS 472

Query:   480 SVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY 539
              +ECYM+QYGV+EEEA ++ ++ +   W +INEE   P   P   L+  LNL R++ V+Y
Sbjct:   473 GIECYMKQYGVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIY 532

Query:   540 QNGDGYTNSSGKTKDRIASLLVDPL 564
             +N DGYT+     KD IASLL+DP+
Sbjct:   533 KNEDGYTHVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.51360.94520.9605yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-111
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-104
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-76
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-49
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-38
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 4e-38
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 1e-15
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  713 bits (1842), Expect = 0.0
 Identities = 284/550 (51%), Positives = 384/550 (69%), Gaps = 13/550 (2%)

Query: 19  RRSSNYHPSIWGD-HFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNNTAWKTIEEIVT 77
           R S+N+ PS+WGD HF+++SS+      E+E+  E LK EV K+L  +       E +  
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPVDLFERL-W 58

Query: 78  LVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYK 137
           L+D+LQRLG++YHFE+EIKE L  IY             + +DLYT AL FRLLRQHGY 
Sbjct: 59  LIDRLQRLGISYHFEDEIKEILDYIYRYWTERGES----NEDDLYTTALGFRLLRQHGYN 114

Query: 138 VSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLP 197
           VS+D+FKKFKDE G+FK  LT D +G+L LYEAS+L   GE+IL+EA  F+ KHL+  L 
Sbjct: 115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLE 174

Query: 198 H---ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQ 254
               I   L+ ++E++LEIPLH  +PRLEAR YI  YE ++   NE +LELAKLDFN+LQ
Sbjct: 175 SNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNILQ 233

Query: 255 ELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIA 314
            LH+ EL  +SRWWKD+D A+KLPFARDRLVECYFW  G YFEP+YS+ R  + K IA+ 
Sbjct: 234 ALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALI 293

Query: 315 SVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKE 374
           +VIDD YDVYGTLEEL+LFT A+ERW+++A ++LP+YM++ + ALL+ V E+E++ + + 
Sbjct: 294 TVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEG 353

Query: 375 PPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLED 434
               + Y KEA K LV+AY VEAKW +  YVPTFEEYMEN+ +S G   L + + +G+ D
Sbjct: 354 GSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGD 413

Query: 435 MAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGVSEEE 494
           + +T++A +W  S PK++R SS I RL +D+ TY+ E +RGD  SS+ECYM++YGVSEEE
Sbjct: 414 I-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEE 472

Query: 495 ACNKIKEMVEIEWMNINEEIQDPNHP-PLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTK 553
           A  +IK+M+E  W  +NEE   P+   P       LNLAR++ V Y+ GDG+T+  G+ K
Sbjct: 473 AREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIK 532

Query: 554 DRIASLLVDP 563
           D I SLL +P
Sbjct: 533 DHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.57
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.33
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 93.58
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 90.96
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 86.91
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.24
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 84.05
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 82.64
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.2e-153  Score=1272.79  Aligned_cols=533  Identities=53%  Similarity=0.919  Sum_probs=511.0

Q ss_pred             CCCCCCCCCCCcc-ccccccCCCCCccHHHHHHHHHHHHHHHHHHhc---cccCccchhhHHHHHHHHHHhCcccccHHH
Q 008427           19 RRSSNYHPSIWGD-HFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS---NNTAWKTIEEIVTLVDQLQRLGVAYHFENE   94 (566)
Q Consensus        19 r~~a~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~~~~~~~~l~lID~lqrLGi~~hFe~E   94 (566)
                      ||+++||||+||| +|++++++.. ....+.+++++||++||+||..   +.    |++++|++||+||||||+|||++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E   75 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE   75 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence            7899999999999 7777654432 2236889999999999999985   56    899999999999999999999999


Q ss_pred             HHHHHHHHHhhc-cCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccC
Q 008427           95 IKEDLQSIYNSH-VNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYL  173 (566)
Q Consensus        95 I~~~L~~i~~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~LYeAs~l  173 (566)
                      |+++|++||++| +++.  ..   ..||++|||+|||||||||+||||||++|||++|+|++++.+||+||||||||||+
T Consensus        76 I~~~L~~i~~~~~~~~~--~~---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l  150 (542)
T cd00684          76 IKEILDYIYRYWTERGE--SN---EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHL  150 (542)
T ss_pred             HHHHHHHHHHhhccccc--cc---CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhc
Confidence            999999999998 4431  11   57999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhccC---CCCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhhh
Q 008427          174 RVQGENILEEACEFSRKHLKSLLPH---ISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF  250 (566)
Q Consensus       174 ~~~gE~iLdeA~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelAkldF  250 (566)
                      ++|||+|||||++||++||++++++   ++++|+++|++||++|||+++||||||+||++|+++ +++|++|||||||||
T Consensus       151 ~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldf  229 (542)
T cd00684         151 SFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDF  229 (542)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHH
Confidence            9999999999999999999999986   788999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCCHHHH
Q 008427          251 NLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGTLEEL  330 (566)
Q Consensus       251 n~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt~eEl  330 (566)
                      |+||++||+||+++++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|+
T Consensus       230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl  309 (542)
T cd00684         230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL  309 (542)
T ss_pred             HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 008427          331 KLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEE  410 (566)
Q Consensus       331 ~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPtleE  410 (566)
                      +.||+||+|||+++++.+|+|||+||.++++++++++.++.++++++++.|++++|+++++||++||+|+++||+||++|
T Consensus       310 ~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eE  389 (542)
T cd00684         310 ELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEE  389 (542)
T ss_pred             HHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             HHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHhhcCC
Q 008427          411 YMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQQYGV  490 (566)
Q Consensus       411 Yl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMke~gv  490 (566)
                      ||++|++|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+
T Consensus       390 Yl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~  468 (542)
T cd00684         390 YMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGV  468 (542)
T ss_pred             HHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCC
Confidence            9999999999999999999999999 999999997777999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhccc
Q 008427          491 SEEEACNKIKEMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDP  563 (566)
Q Consensus       491 S~EeA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~p  563 (566)
                      |+|+|+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||++|
T Consensus       469 s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         469 SEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999999999999998 7899999999999999999999999999999878999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-145
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-124
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-124
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-124
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-124
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-124
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-124
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-123
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-122
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-122
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-100
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-97
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-94
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-91
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-81
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 1e-71
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 4e-64
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-24
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  512 bits (1318), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/568 (46%), Positives = 373/568 (65%), Gaps = 22/568 (3%)
Query: 3   LKSLPSSKE-STKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKL 61
           +  +PSS   S+  DE R  +++ PSIWGD F+N    DK  +AE EKR + LK EV K+
Sbjct: 5   VSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKM 62
Query: 62  L---MSNNTAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHN 118
           +   M+N+T      + +  +D +QRLGV+YHF  EI+++L++IY++        N D  
Sbjct: 63  IVAPMANST------QKLAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAE 108
Query: 119 NDLYTVALRFRLLRQHGYKVSADIXXXXXXXXXXXXAMLTNDARGLLCLYEASYLRVQGE 178
           NDLYT ++RFRLLR+HGY VS D+            + +T+D RGLL LY+ASYLRV GE
Sbjct: 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGE 168
Query: 179 NILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTR 238
           +IL+EA  F+  HL   +  +   L+ +V H+L+  + RG+PR+EAR Y+S+Y+ D  + 
Sbjct: 169 DILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESH 227
Query: 239 NELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 298
           N+ +LE AK+DFN+LQ LHR+ELSEI RWWKD+DF  KLP+ARDR+VE YFWI GVYFEP
Sbjct: 228 NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEP 287
Query: 299 KYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFA 358
           +YS+ RK +TK+IA+AS++DD YD Y T EEL  +T+AIERW++   +E+P+YM+  Y A
Sbjct: 288 QYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKA 347
Query: 359 LLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMS 418
           LLDV +EM            + YAK A+  L ++Y VEAKW    Y P+FEE+  N+  +
Sbjct: 348 LLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407
Query: 419 SGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAP 478
            GY MLA+ + VG+ D+ +T +   WA S PKII+ S++I R  DDV  +K +  R D  
Sbjct: 408 CGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDC 466
Query: 479 SSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL 538
           S++ECYM++YGV+ +EA +   + VE  W ++N+E   P   P + L  SLNLAR+M VL
Sbjct: 467 SAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVL 526
Query: 539 YQNGDGYTNSSGKTKDRIASLLVDPLPM 566
           Y+ GDGYT      K  I SLL++P+ +
Sbjct: 527 YREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-165
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-163
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-163
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-114
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 6e-38
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-35
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 7e-19
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-10
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  569 bits (1468), Expect = 0.0
 Identities = 265/560 (47%), Positives = 374/560 (66%), Gaps = 15/560 (2%)

Query: 7   PSSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMSNN 66
            SS  S+  DE R  +++ PSIWGD F+N    +    AE EKR + LK EV K++++  
Sbjct: 10  SSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNID--AETEKRHQQLKEEVRKMIVAPM 67

Query: 67  TAWKTIEEIVTLVDQLQRLGVAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVAL 126
                  + +  +D +QRLGV+YHF  EI+++L++IY+++         D  NDLYT ++
Sbjct: 68  ---ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNN--------NDAENDLYTTSI 116

Query: 127 RFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLCLYEASYLRVQGENILEEACE 186
           RFRLLR+HGY VS D+F KFKDE+G FK+ +T+D RGLL LY+ASYLRV GE+IL+EA  
Sbjct: 117 RFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAIS 176

Query: 187 FSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELA 246
           F+  HL   +  +   L+ +V H+L+  + RG+PR+EAR Y+S+Y+   S  N+ +LE A
Sbjct: 177 FTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-HNKALLEFA 235

Query: 247 KLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKF 306
           K+DFN+LQ LHR+ELSEI RWWKD+DF  KLP+ARDR+VE YFWI GVYFEP+YS+ RK 
Sbjct: 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKM 295

Query: 307 MTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEM 366
           +TK+IA+AS++DD YD Y T EEL  +T+AIERW++   +E+P+YM+  Y ALLDV +EM
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355

Query: 367 EDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMSSGYPMLAV 426
                       + YAK A+  L ++Y VEAKW    Y P+FEE+  N+  + GY MLA+
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415

Query: 427 EALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQ 486
            + VG+ D+ +T +   WA S PKII+ S++I R  DDV  +K +  R D  S++ECYM+
Sbjct: 416 TSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYME 474

Query: 487 QYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYT 546
           +YGV+ +EA +   + VE  W ++N+E   P   P + L  SLNLAR+M VLY+ GDGYT
Sbjct: 475 EYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYT 534

Query: 547 NSSGKTKDRIASLLVDPLPM 566
                 K  I SLL++P+ +
Sbjct: 535 YVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.76
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.09
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 90.36
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 85.71
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 85.3
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 82.62
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-168  Score=1378.51  Aligned_cols=543  Identities=49%  Similarity=0.873  Sum_probs=499.7

Q ss_pred             CCCCCCcccccCCCCCCCCCCCccccccccCCCCCccHHHHHHHHHHHHHHHHHHhc-cccCccchhhHHHHHHHHHHhC
Q 008427            8 SSKESTKADENRRSSNYHPSIWGDHFINVSSNDKYPNAEVEKRFETLKAEVEKLLMS-NNTAWKTIEEIVTLVDQLQRLG   86 (566)
Q Consensus         8 ~~~~~~~~~~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~~~~~l~lID~lqrLG   86 (566)
                      ++..+++.++.||+||||||+|||+||++ +. ++..+.+.+|+++||++||+||.. .+    |++++|+|||+|||||
T Consensus        11 ~~~~~~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLG   84 (554)
T 3g4d_A           11 SSPLSSNKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLG   84 (554)
T ss_dssp             --------------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTT
T ss_pred             hhhhhccCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcC
Confidence            44445566678999999999999999997 43 344678899999999999999975 46    8999999999999999


Q ss_pred             cccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHh
Q 008427           87 VAYHFENEIKEDLQSIYNSHVNSNCDVNYDHNNDLYTVALRFRLLRQHGYKVSADIFKKFKDEKGEFKAMLTNDARGLLC  166 (566)
Q Consensus        87 i~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~dv~glL~  166 (566)
                      |+|||++||+++|++||++   +  ...   ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||
T Consensus        85 i~~hF~~EI~~~L~~i~~~---~--~~~---~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~  156 (554)
T 3g4d_A           85 VSYHFTKEIEDELENIYHN---N--NDA---ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLE  156 (554)
T ss_dssp             CGGGCHHHHHHHHHHHHHS---C--CCT---TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHhc---c--CCC---CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHH
Confidence            9999999999999999985   1  111   4799999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCchHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHccCcccCCcchHHHhhhHHhhhcCCccccHHHHHHH
Q 008427          167 LYEASYLRVQGENILEEACEFSRKHLKSLLPHISTSLANQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELA  246 (566)
Q Consensus       167 LYeAs~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~Y~~~~~~~n~~lLelA  246 (566)
                      |||||||++|||+|||||++||++||++.+.+++++|+++|+|||++|||+++||||||+||++|+++ +++|++|||||
T Consensus       157 LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelA  235 (554)
T 3g4d_A          157 LYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFA  235 (554)
T ss_dssp             HHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHH
T ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHH
Confidence            99999999999999999999999999999888888999999999999999999999999999999999 99999999999


Q ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHHhhhhcccCC
Q 008427          247 KLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVIDDIYDVYGT  326 (566)
Q Consensus       247 kldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~viDD~fD~ygt  326 (566)
                      |||||+||++||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||
T Consensus       236 kldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT  315 (554)
T 3g4d_A          236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT  315 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 008427          327 LEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVP  406 (566)
Q Consensus       327 ~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vP  406 (566)
                      +|||++||+||+|||++++++||+|||+||.+++++++|+++++.++||+++++|++++|+++++||++||+|+++||+|
T Consensus       316 leEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvP  395 (554)
T 3g4d_A          316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKP  395 (554)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             CHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCCCchhhHHHh
Q 008427          407 TFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAPSSVECYMQ  486 (566)
Q Consensus       407 tleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~~n~V~cyMk  486 (566)
                      |+||||+||++|+|++++++++++|||+. +|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+
T Consensus       396 T~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMk  474 (554)
T 3g4d_A          396 SFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYME  474 (554)
T ss_dssp             CHHHHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHH
T ss_pred             CHHHHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHH
Confidence            99999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008427          487 QYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSSGKTKDRIASLLVDPLPM  566 (566)
Q Consensus       487 e~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~  566 (566)
                      |+|+|+|+|++++++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus       475 e~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          475 EYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999998999999999999999999999999999999878999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-141
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-134
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 4e-74
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-70
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-52
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 6e-37
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  409 bits (1053), Expect = e-141
 Identities = 119/326 (36%), Positives = 188/326 (57%)

Query: 239 NELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 298
           N LI ELAKL+FN++Q  H++EL ++SRWW  + F  KLPF RDRLVE +FW +G++   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 299 KYSITRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFA 358
           ++   RK    II +A+VIDDIYDVYGTL+EL+LFT   +RW+  +   LP YMQ+CY+ 
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 359 LLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEAKWFNAKYVPTFEEYMENSTMS 418
           + + + +     + +    C+ Y ++++  LV AYF EAKW+++ Y P+ +EY+  + +S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 419 SGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDAP 478
              P +         + +     +D       I+  + +I RL DD+ T   E  RGD P
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 479 SSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL 538
            +++CYM++   SEEEA   +K ++   W ++N  I      P   +  + N+ R+   +
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFI 301

Query: 539 YQNGDGYTNSSGKTKDRIASLLVDPL 564
           Y +GDG+     KT + IA LL +P 
Sbjct: 302 YLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.43
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.2e-98  Score=780.64  Aligned_cols=327  Identities=44%  Similarity=0.836  Sum_probs=311.0

Q ss_pred             ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHhHHHhhccccCCCCchhhHHHHHHHHHHHHH
Q 008427          238 RNELILELAKLDFNLLQELHRRELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSITRKFMTKIIAIASVI  317 (566)
Q Consensus       238 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~vi  317 (566)
                      .|++||||||||||+||++||+||+.++|||+++|+.+++||||||++|||||++|++|||+||.+|+++||++++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCHHHHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHHHhchhccCCCcchHHHHHHHHHHHHHHHHHH
Q 008427          318 DDIYDVYGTLEELKLFTHAIERWEVAAANELPKYMQVCYFALLDVVKEMEDKPVNKEPPGCMHYAKEAIKGLVRAYFVEA  397 (566)
Q Consensus       318 DD~fD~ygt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~k~~w~~~~~a~l~EA  397 (566)
                      ||+||+|||+||++.||+||+|||.++++.||+|||+||.++++++++++.++.++||++++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhcCCCCCcHHHHHhccchhHHHHHHHhHhhhccCccchhhhhcCCCC
Q 008427          398 KWFNAKYVPTFEEYMENSTMSSGYPMLAVEALVGLEDMAITKQALDWAISVPKIIRYSSLIARLDDDVRTYKVEQERGDA  477 (566)
Q Consensus       398 ~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~G~~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rGd~  477 (566)
                      +|+++||+||+||||+||.+|+|+++++.+++++||..  +++.++|++++|+|+++++.|+||+|||+|+++|+++|++
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~~--~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~  238 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSA--TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQI  238 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTTC--CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCCC--cHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCC
Confidence            99999999999999999999999999999999999974  6778999999999999999999999999999999999999


Q ss_pred             CchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHH
Q 008427          478 PSSVECYMQQYGVSEEEACNKIKEMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSSGKTKDRI  556 (566)
Q Consensus       478 ~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~i  556 (566)
                      +|+|+|||+|+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|+||+++++|+++ ||||+|++.+|++|
T Consensus       239 ~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i  318 (328)
T d5easa2         239 ATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI  318 (328)
T ss_dssp             TCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999977 99999987899999


Q ss_pred             HhhhcccCCC
Q 008427          557 ASLLVDPLPM  566 (566)
Q Consensus       557 ~~ll~~pi~~  566 (566)
                      ++||++||||
T Consensus       319 ~~ll~epi~~  328 (328)
T d5easa2         319 INLLVDSIKI  328 (328)
T ss_dssp             HHHHTCCCCC
T ss_pred             HHHhccCCcC
Confidence            9999999997
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure