Citrus Sinensis ID: 008432

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
Protein Sequence
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTSPPQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSHNSEVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM
Secondary Structure (PSIPRED)
ccccHHHHHcccccHHHHHHHccccccccHHHccccHHHHHHHHHccccccHHHHHcccccEEEEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEcccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEEcHHHHHHEEEEEcccccHHHHHHHHHHcccccccccccccccccEEcccccccccccccccccccccccHHHcccccccccccccccccHcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccHHHcccccccccHHHHHHHccHEEccccccccccccccHHHcccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccEEEEEcccccccEEEcccccc
Coil and Loop (DISEMBL)
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKtkvardptllpkgksqakreavtlpeiketdvEDLEQflnypnatatmEFQQNAyfsmrlddvddsflqsnvgvddslqnlhqanvdditlterfdtyqanadtydrferfdieedtetqlnftsreqtqipklmpspphqdepqradvihdqhpeqqnqqsngskEEARQdqqrkgplkrkTRKQAAFAmdydqtmipgeVYQSWLKDASDISSRRRRKRKASTDLLSTMKIAslmemppvvLIEDLftkgnreihypdpllklwmkstqpphdspsartsppqppepslssppglgryeepaagyflkvkpfedihsgvgsqsipssasghgilshnsevnssrsnqkrprsssrhsgsglepvaeenpsrfpdpnfrlsrlsersstpdpellvetaptptpvpvtnpppvdkitDSIRMQMKshfempgapkvesLNNLAAGLNRKAAAMLFYQTCVLATSDvlkveqnkpygdilisrgkrm
Flexible Loop (DISEMBL)
mfyshqllARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEInaawktkvardptllpkgksqakreavtlpeiketdveDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEqqnqqsngskeearqdqqrkgplkrktrKQAAfamdydqtmipgevyqswlkdasdissrrrrkrkastdllstmkiaslmemppVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSpsartsppqppePSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSHNsevnssrsnqkrprsssrhsgsglepvaeenpsrfpdPNFRLSRLSERSSTPDPELlvetaptptpvpvtnpppVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATsdvlkveqnkpygdilisrgkrm
Low Complexity Region (SEG)
MFYSHQLLARKASLGQIWMAATMHAKMNRkklnklnlikiCEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDIssrrrrkrkASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDspsartsppqppepslssppGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSHNSEVNSSRSNQKRPrsssrhsgsgLEPVAEENPSRFPDPNFRLSRLSERSSTPDpellvetaptptpvpvtnpppvDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM
Disordered region (IsUnstruct)
*****QLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVAR**************************VEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDI****************************************************************************AMDYDQTMIPGEVYQSWL**********************TMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWM*************************************AGYFLKVKPFE******************************************************************************************************************************NLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILI******
Disordered Region (DISOPRED)
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVARDPTLL**********AVTLPEIKETDVEDLEQFLNYPNATAT****************************************************************************************************************************************************************************************************LIEDLFTKGNREIHYPDPLLKL*****************************************************************************************************************************************************************************************AAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR*
Disordered Region (DISEMBL)
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVARDPTLLP**********VTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLM**********RADVIHDQH*******************************QAAFAMDYDQTMIPGEVYQSWLKDAS*************TDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKS************************PPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSH*********************************SRFPDPNFRLSRL***********LVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM
Disordered Region (DISPRO)
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRL********QS***************************************************************************************************************************DQ*M*P*EVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHD****************************************************************************************************************************************PPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTSPPQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSHNSEVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	565	2.2.26 [Sep-21-2011]
Q9S7T7	627	Sister chromatid cohesion	yes	no	0.955	0.861	0.457	1e-128
Q9FQ19	693	Sister chromatid cohesion	no	no	0.215	0.176	0.375	2e-16
Q61550	635	Double-strand-break repai	yes	no	0.265	0.236	0.333	2e-12
Q3SWX9	630	Double-strand-break repai	yes	no	0.265	0.238	0.333	2e-12
O60216	631	Double-strand-break repai	yes	no	0.265	0.237	0.333	2e-12
Q9H4I0	556	Double-strand-break repai	no	no	0.184	0.187	0.383	4e-12
O93310	629	Double-strand-break repai	N/A	no	0.184	0.165	0.383	5e-12
D2HSB3	554	Double-strand-break repai	no	no	0.184	0.187	0.375	2e-11
A2AU37	552	Double-strand-break repai	no	no	0.184	0.188	0.357	6e-11
Q9FQ20	810	Sister chromatid cohesion	no	no	0.276	0.192	0.273	2e-08

>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 288/630 (45%), Positives = 361/630 (57%), Gaps = 90/630 (14%)

Query: 7   LLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIV 66
           LLARKA LGQIWMAAT+HAK+NRKKL+KL++I+ICEEILNP+VPMALRLSGILMGGVVIV
Sbjct: 17  LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76

Query: 67  YEKK------------IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLE 114
           YE+K            +EIN AW+TK   DPTLLPKGK+ A++EAVTLPE +E D  D E
Sbjct: 77  YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136

Query: 115 QFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFD 174
           Q  N P     M+FQQ  + SMRL   D+S + +N   +D  Q  HQA+ ++ITL E   
Sbjct: 137 QTRNVPKFGNYMDFQQ-TFISMRL---DESHVNNNPEPEDLGQQFHQADAENITLFEYHG 192

Query: 175 TYQANADTYDRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPP-HQDEPQRADVIHDQH 232
           ++Q N +TYDRFERFDIE D ETQ+N   RE  +IP  L+PSPP H D P+  +    Q 
Sbjct: 193 SFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVNPTSPQR 252

Query: 233 PEQQNQQSNGSKEEA-------RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWL 285
            EQQ  + +G  E+        +++  R  P K++ RK A  AMDY+QT+I G VYQSWL
Sbjct: 253 QEQQENRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWL 312

Query: 286 KDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWM 345
           +D SDI   R  KRK    +   M+      MPP  L E       ++  YP  L +LW 
Sbjct: 313 QDTSDILC-RGEKRKVRGTIRPDMESFKRANMPPTQLFE-------KDSSYPPQLYQLWS 364

Query: 346 KSTQPPHDSPSARTSPPQPPEPS--------------------------LSSPPGLGRYE 379
           K+TQ    S S    P    E S                          L SP  + R  
Sbjct: 365 KNTQVLQTSSSESRHPDLRAEQSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEILRTV 424

Query: 380 EPAAGYFLK---------------------VKPFEDIHSGVGSQSIPSSASGHGILSHNS 418
               G  ++                     V PF   +SG   +S+PS+ S  G  S N+
Sbjct: 425 RTGKGASVESMMAGSRASPETINRQAADINVTPF---YSGDDVRSMPSTPSARGAASINN 481

Query: 419 EVNSSRS---NQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLV 475
              SS+S   N+KRP SS R    GLEPVAEE P    +  F  S L E+  T D E+L 
Sbjct: 482 IEISSKSRMPNRKRPNSSPRR---GLEPVAEERPWEHREYEFEFSMLPEKRFTADKEILF 538

Query: 476 ETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFY 535
           ETA T T  PV N    + ITDSI+  +K+HFE PGAP+VESLN LA G++R AAA LF+
Sbjct: 539 ETASTQTQKPVCNQSD-EMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNAAAKLFF 597

Query: 536 QTCVLATSDVLKVEQNKPYGDILISRGKRM 565
           Q+CVLAT  V+KV Q +PYGDILI+RG  M
Sbjct: 598 QSCVLATRGVIKVNQAEPYGDILIARGPNM 627

Involved in chromosome condensation, pairing and segregation during meiosis. Responsible for cohesion between replicated sister chromatids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 14/136 (10%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFYSH LLARK  LG +W AA +H ++ + +   +N+    + I+ P VP+ALR S  L+
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  GGVVIVYEKKIE-------INAAWKTKVARDPTL-LPKGKSQAKREAVTLPEIKETDVED 112
            GVV +Y KK++       +   W  K      + LP+   QA  E+VTLP+    D  D
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 113 LEQFLNYPNATATMEF 128
           LE      + T  MEF
Sbjct: 121 LE------DDTLDMEF 130

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 21/171 (12%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H +L+++  L +IW+AA    K+ +  + + NL    E I++P V MALR SG L+
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
            GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query: 113 LEQFL-NYPNATATMEFQQN----AYFSMRLDDVDDSFLQSN----VGVDD 154
            +Q L +  +     +F  N       +MR +  + S LQ N     G+DD
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDD 167

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Mus musculus (taxid: 10090)

>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 21/171 (12%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H +L+++  L +IW+AA    K+ +  + + NL    E I++P V MALR SG L+
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
            GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query: 113 LEQFL-NYPNATATMEFQQN----AYFSMRLDDVDDSFLQSN----VGVDD 154
            +Q L +  +     +F  N       +MR +  + S LQ N     G+DD
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDD 167

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Bos taurus (taxid: 9913)

>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 21/171 (12%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H +L+++  L +IW+AA    K+ +  + + NL    E I++P V MALR SG L+
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
            GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query: 113 LEQFL-NYPNATATMEFQQNAY----FSMRLDDVDDSFLQSN----VGVDD 154
            +Q L +  +     +F  N       +MR +  + S LQ N     G+DD
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDD 167

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Also plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway.

Homo sapiens (taxid: 9606)

>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H L++++  L +IW+AA    K+ +  + + NL    E+IL+P V +ALR SG L+
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60

Query: 61  GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
            GVV +Y +K +        A  K K+   P L  LPK   +A   A+TLPE
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPE 112

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Homo sapiens (taxid: 9606)

>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 8/112 (7%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H +L+++  L +IW+AA    K+ +  + + NL    E I+ P V MALR SG L+
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60

Query: 61  GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPE 104
            GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE 112

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/espl1 and dissociates from chromatin, allowing sister chromatids to segregate.

Xenopus laevis (taxid: 8355)

>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 8/112 (7%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H L++++  L +IW+AA    K+ +  + + NL    E+IL+  V +ALR SG L+
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60

Query: 61  GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
            GVV +Y +K +        A  K K+   P L  LPK   +A   A+TLPE
Sbjct: 61  LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPE 112

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Ailuropoda melanoleuca (taxid: 9646)

>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 8/112 (7%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFY+H L++++  L +IW+AA    K+ +  + + NL    ++I++P V +ALR SG L+
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60

Query: 61  GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
            GVV +Y +K +        A  K K+   P L  LPK   +A    +TLPE
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPE 112

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Mus musculus (taxid: 10090)

>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 49/205 (23%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAV-PMALRLSGIL 59
           MFYSH L++RK  LG IW+AA    K+ + ++   ++    ++IL   +  +  R+   L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  MGGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQF-LN 118
           + GVV +Y KK++       K           +   ++  V+LP         +E F + 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLP-------ASIECFSIA 113

Query: 119 YPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANV---DDITL------ 169
            P       F+ +A+               ++GV   L++ H  NV   +DITL      
Sbjct: 114 LPE-----RFELDAF---------------DLGV---LEDFHGGNVKPHEDITLKDGSQE 150

Query: 170 TERFDTYQANADTYDRFERFDIEED 194
           TER D Y          ERFD+EED
Sbjct: 151 TERMDMYS--------MERFDMEED 167

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
224101187	606	predicted protein [Populus trichocarpa]	0.948	0.884	0.608	0.0
255559503	613	cohesin subunit rad21, putative [Ricinus	0.953	0.879	0.552	1e-169
356499205	623	PREDICTED: sister chromatid cohesion 1 p	0.976	0.886	0.509	1e-149
449460927	589	PREDICTED: sister chromatid cohesion 1 p	0.913	0.876	0.520	1e-149
297736567	614	unnamed protein product [Vitis vinifera]	0.955	0.879	0.508	1e-148
359486480	608	PREDICTED: sister chromatid cohesion 1 p	0.932	0.866	0.506	1e-141
297806559	619	DIF1/SYN1 [Arabidopsis lyrata subsp. lyr	0.969	0.885	0.466	1e-133
15239141	617	Sister chromatid cohesion 1 protein 1 [A	0.966	0.884	0.462	1e-130
147804656	597	hypothetical protein VITISV_042401 [Viti	0.904	0.855	0.487	1e-126
30680958	627	Sister chromatid cohesion 1 protein 1 [A	0.955	0.861	0.457	1e-126

>gi|224101187|ref|XP_002312177.1| predicted protein [Populus trichocarpa] gi|222851997|gb|EEE89544.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/616 (60%), Positives = 437/616 (70%), Gaps = 80/616 (12%)

Query: 19  MAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKI------- 71
           MAATMHAK+NRKKLNKLN+I+ICEEILNP+VPMALRLSGILMGGVVIVYE+K+       
Sbjct: 1   MAATMHAKINRKKLNKLNIIRICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLYDDV 60

Query: 72  -----EINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNA-TAT 125
                EIN AWK KVA DPT+LPKGKSQA++EAVTLPE +ETDV ++EQ LNY NA T T
Sbjct: 61  TRLLVEINEAWKVKVAPDPTVLPKGKSQARKEAVTLPENQETDVGEIEQSLNYSNAATTT 120

Query: 126 MEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDR 185
           M FQQ AYF+MRLD+VD+ F+ ++    D+  +LHQA+ D+ITL ERFD+YQA+AD Y+R
Sbjct: 121 MGFQQTAYFTMRLDNVDEPFVNNDTREGDASHHLHQADADNITLFERFDSYQADADAYNR 180

Query: 186 FERFDIEEDTETQLNFTSREQTQIPK-LMPSPPHQDEPQRADVIHDQHPE-QQNQQSNGS 243
           FERFDIE D ETQ+NFTS +   IP  L+PSP  QDE QRA+   D HPE Q NQQSN  
Sbjct: 181 FERFDIEGDEETQVNFTSADHMDIPTTLIPSPHEQDEAQRAEENQDHHPEFQVNQQSNEC 240

Query: 244 KEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRKAST 303
           K  ARQDQQ++ P+KRKTR+QA   +DY+QT+IPG VYQSWL++ASDI SRR RKRKA  
Sbjct: 241 KG-ARQDQQKRRPIKRKTRRQATTTVDYEQTIIPGHVYQSWLQNASDIVSRRGRKRKARM 299

Query: 304 DLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTSPPQ 363
            ++ST KI++LME+PP VLI+D    GNREI+YP PLL+LW KSTQPPHDSPS RTS P 
Sbjct: 300 GIMSTTKISNLMELPPTVLIDD---NGNREIYYPAPLLELWTKSTQPPHDSPSERTSAPL 356

Query: 364 PPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSS---------------- 407
           PPEPS SSPP    YEEP AGY      F+D+HSGVGSQS+ +S                
Sbjct: 357 PPEPSKSSPPDRVNYEEP-AGY-----TFDDVHSGVGSQSLGTSIEKMRTNVVNDEQSMD 410

Query: 408 ------------------------------------ASG--HGILSHNSEVNSSRSNQKR 429
                                               +SG  HGI  H  EVN  RS++K 
Sbjct: 411 ILMEELKANLRNNGVRMTEANMATPRNSGDGVGSIPSSGSGHGIPPHYLEVNLGRSSKKG 470

Query: 430 PRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPVPVTNP 489
             SSSRHSGS LE V EE+P RF DPNF LSRLSE   TPD ELLVET PT T   V   
Sbjct: 471 RHSSSRHSGSSLETVVEEDPWRFADPNFELSRLSENGPTPDQELLVETEPTQTQHHVVG- 529

Query: 490 PPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVE 549
            PVDKI DSIRMQMK+HFE PGAP+VESLNNLAAG+N KAAA+LFYQTCVLA+ D L+VE
Sbjct: 530 QPVDKIADSIRMQMKTHFETPGAPQVESLNNLAAGMNTKAAALLFYQTCVLASRDFLRVE 589

Query: 550 QNKPYGDILISRGKRM 565
           Q  PYGDILIS+G +M
Sbjct: 590 QKVPYGDILISKGAKM 605

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559503|ref|XP_002520771.1| cohesin subunit rad21, putative [Ricinus communis] gi|223539902|gb|EEF41480.1| cohesin subunit rad21, putative [Ricinus communis]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 343/621 (55%), Positives = 423/621 (68%), Gaps = 82/621 (13%)

Query: 19  MAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKI------- 71
           MAATMHAK+NR+KL+KLN+IKICEEILNP+VPMALRLSGILMGGVVIVYE+K+       
Sbjct: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLYDDV 60

Query: 72  -----EINAAWKTKVAR-DPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATAT 125
                E+N AWK   A  DPT+LPKGKSQAK+EAVTLPE ++TD  ++EQ +N+ NA A 
Sbjct: 61  TRLLVEVNEAWKVNSAPPDPTVLPKGKSQAKKEAVTLPENQDTDAGEIEQSVNFSNANAA 120

Query: 126 MEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDR 185
           MEFQ+ AYF+MRLDDVD+ F+ ++   +D  Q LHQA+ + I L ERFD YQ + + Y+R
Sbjct: 121 MEFQRTAYFAMRLDDVDEPFINNDSREEDVSQQLHQADPEHIRLFERFDLYQTHTEMYNR 180

Query: 186 FERFDIEEDTETQLNFTSREQTQIP-KLMPSPPHQDEP--------QRADVIHDQHPEQQ 236
           +ERFDIEE+ ETQLNFTS E  +IP  L+PSPP QDE          ++  + ++  EQ+
Sbjct: 181 YERFDIEEE-ETQLNFTSGEHVEIPTSLIPSPPKQDEAPSAYLVQLMKSKTVKNKPVEQK 239

Query: 237 NQQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRR 296
           N      +   ++DQQRKGP K++ ++QA  AMDY+QT+IPG  YQSWL++ASDI SRR 
Sbjct: 240 NASLTDLESMMKEDQQRKGPTKKRIKRQATPAMDYEQTIIPGPTYQSWLQNASDIVSRRG 299

Query: 297 RKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPS 356
           RKRKA  D++S MK A+LME+PP+VLI+DL    N EI+YP PLL+LWMKSTQPPHDSPS
Sbjct: 300 RKRKARRDIMSKMKTANLMELPPLVLIDDLSANANGEIYYPAPLLELWMKSTQPPHDSPS 359

Query: 357 ARTSPPQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGIL-- 414
           ARTS P PPEPS SSP   G Y++P  GY     PFED  SG+GS+S+ +       +  
Sbjct: 360 ARTSAPLPPEPSSSSPLERGDYQDP-TGY-----PFEDFQSGIGSESLGAIEKQRKTIIN 413

Query: 415 --------------------SHNSEVN-----------------SSRSNQKRPRSSS--- 434
                               S  +E N                 SS S    P   S   
Sbjct: 414 EVMPMETLMNELRSKLVNNGSKTTEANLDITFCKFTGDEVRSIPSSGSGHGMPSHQSEVH 473

Query: 435 ----------RHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPV 484
                     RHSGS LEPV EEN  +FPDPNF+L+RLSE+  TPD ELLVET PT T  
Sbjct: 474 SARKRPYSGSRHSGSSLEPVEEENSWQFPDPNFKLARLSEKDLTPDQELLVETGPTQTQK 533

Query: 485 PVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSD 544
           P+ N PPVDK+TD+IRMQMK+HFE PGAP VESLNNLAAG+NRK AAMLFYQTCVLA+ D
Sbjct: 534 PIIN-PPVDKMTDTIRMQMKTHFETPGAPAVESLNNLAAGMNRKGAAMLFYQTCVLASRD 592

Query: 545 VLKVEQNKPYGDILISRGKRM 565
            L+VEQ  PYG+ILISRG+++
Sbjct: 593 CLRVEQKVPYGEILISRGEKL 613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499205|ref|XP_003518432.1| PREDICTED: sister chromatid cohesion 1 protein 1-like [Glycine max]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 324/636 (50%), Positives = 402/636 (63%), Gaps = 84/636 (13%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFYSHQLLARKA LGQIWMAATMHAK+NR+KL+KLN+I ICEEILNP++PMALRLSGILM
Sbjct: 1   MFYSHQLLARKAPLGQIWMAATMHAKINRRKLDKLNIINICEEILNPSIPMALRLSGILM 60

Query: 61  GGVVIVYEKK------------IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKET 108
           GGVVIVYE+K            +EIN AWK K A DPTLLPK KS+AK+EAVTLP   ET
Sbjct: 61  GGVVIVYERKVKLLYDDVTRFLVEINEAWKVKAAPDPTLLPKSKSKAKKEAVTLPGTGET 120

Query: 109 DVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVD-DSLQNLHQANVDDI 167
           +V D+EQ L + N   T  FQ NAYF+MRLD VD+ F+ +    D D  + LHQ + ++I
Sbjct: 121 NVADIEQSLQFSNTGTTNGFQHNAYFTMRLDSVDEPFISNGAREDQDQSELLHQVDAENI 180

Query: 168 TLTERFDTYQANADTY-----DRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPPHQDE 221
           TL ERF+T+QANAD Y     +RFERFDIE D ETQ+N TS +  QIP  L+PSPPHQDE
Sbjct: 181 TLFERFETFQANADPYNHLLFERFERFDIEGDEETQVNVTSAD--QIPTTLVPSPPHQDE 238

Query: 222 PQRA----DVIHDQH--PEQQN----QQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDY 271
           P RA     V+ ++   P + N    Q  N  +   +Q+ +R+GP KRK  + +   MDY
Sbjct: 239 PTRAYANTGVLMEETTVPSRPNSFMTQPRNDQRSAMQQEPKRRGPNKRKRGQPSTIEMDY 298

Query: 272 DQTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGN 331
           +QT+IP  +YQ WL++ASDI SRR RK+K  TD++S+ KIA+LM++PPVVLI DLFT  N
Sbjct: 299 EQTIIPAHIYQHWLQNASDIVSRRGRKKKL-TDVMSSTKIANLMKLPPVVLIGDLFTAEN 357

Query: 332 REIHYPDPLLKLWMKSTQPPHDSPSARTSPPQ--------------------PPE----- 366
             I+YP  ++ LW+KS QPPHDSPS R S                       P E     
Sbjct: 358 DNIYYPKAIMDLWIKSIQPPHDSPSERISAHHPPEPSFSSPPGVQNEDFMQFPSEDFDSR 417

Query: 367 PSLSSPPGLGRYE-----EPAAGYFLKVKPFEDIHSGVGSQSI---PSSASGHGILSHNS 418
           P   +PP     E     E         +    I SG    S+   P   S +G  SH S
Sbjct: 418 PDYQAPPMEKAREHILLDELTTSLLRGHEATPHISSGKAGDSVHSFPRPTSENGPASH-S 476

Query: 419 EVNSSRS----NQKRPRSSSRHSG-----SGLEPVAEENPSRFPDPNFRLSRLSERSSTP 469
           + +S R+      KR  SS+  SG      GLEP+AE       D NF+L+RL E   TP
Sbjct: 477 DFDSGRTVNRFKNKRYSSSANSSGGLEPLGGLEPLAE-------DVNFKLARLYEDGPTP 529

Query: 470 DPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKA 529
           D EL VET PT T   + +P   DKITDSI+ QMK+HF+ PGAP VESL+NLAAG+ R +
Sbjct: 530 DQELFVETGPTQTQANINHPS--DKITDSIQAQMKAHFDTPGAPPVESLHNLAAGMTRTS 587

Query: 530 AAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
           AA LFYQ CVLA+ D LKV+Q  PYG+I+ SRG +M
Sbjct: 588 AAQLFYQICVLASRDALKVDQKVPYGEIVFSRGLKM 623

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460927|ref|XP_004148195.1| PREDICTED: sister chromatid cohesion 1 protein 1-like [Cucumis sativus] gi|449529198|ref|XP_004171588.1| PREDICTED: sister chromatid cohesion 1 protein 1-like [Cucumis sativus]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 323/620 (52%), Positives = 389/620 (62%), Gaps = 104/620 (16%)

Query: 19  MAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKK-------- 70
           MAATMHAK+NR+KL+ LN+IKICEEILNP+VPMALRLSGILMGGVVIVYE+K        
Sbjct: 1   MAATMHAKINRRKLDNLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60

Query: 71  ----IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATM 126
               IEIN AWK K A +PT LPKGKS AK+EA+T PE    D+            T+ M
Sbjct: 61  TRLLIEINEAWKVKAAPEPTALPKGKSLAKKEAITRPEKDPNDIS---------YNTSPM 111

Query: 127 EFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRF 186
           +FQQ A+FSMRLD VD+ ++      DD  QN HQ + ++ITL ERFD YQ+   T+DRF
Sbjct: 112 KFQQTAFFSMRLDSVDEPYINDKTVEDDPSQNFHQTDAENITLIERFDMYQSKTSTFDRF 171

Query: 187 ERFDIEEDTETQLNFTSREQTQIPKLM-----PSPPHQDEPQRADVIHDQHPEQQNQQSN 241
           ERFDIEED +TQ +F S +QTQIP  +     P   + + P  A+V  DQH E    Q  
Sbjct: 172 ERFDIEEDGDTQPDFASVDQTQIPATVRPPPPPPDKYPEGPPDAEV-QDQHLEHIVDQPA 230

Query: 242 GSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRKA 301
              +E RQ +Q     KRK ++ AA  MDY+QT+IPG +YQSWLKD SD+ SRRRRKRK 
Sbjct: 231 EESKELRQVEQVA--RKRKAKRTAASLMDYEQTIIPGHIYQSWLKDVSDLISRRRRKRKQ 288

Query: 302 STDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTSP 361
            T  + T KIA+LM++PPVVL E LFT+G+RE +YP PLL+LWM+S + P DSPS R+S 
Sbjct: 289 RTGPMFTKKIATLMDLPPVVLSERLFTEGSREAYYPAPLLELWMRSIRQPPDSPSERSST 348

Query: 362 PQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQ------------------- 402
           P PPEPS+ SPP                +PFED +SGVGSQ                   
Sbjct: 349 PLPPEPSVFSPPE---------------RPFEDHYSGVGSQSFGSSMEKLMTGQVNGGAE 393

Query: 403 ----------------------------------SIPSSASGHGILSHNSEVNSSRSNQK 428
                                             S+ SSAS H +LS NS  +S R N+K
Sbjct: 394 IPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSLRFNKK 453

Query: 429 RPRSSSRHSGSGLEPVAEENP-SRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPV--P 485
           R  SSS+ S  GLEPVAEENP S   DPNF+L+RLSE     DP+LL ETA T T +   
Sbjct: 454 RSYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLSEN----DPDLLEETALTQTQLTQA 509

Query: 486 VTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDV 545
               PP DKITDSIRMQMK+HF+ PGA   ESLNNLAAG+NRKAAAMLFYQTCVLA+SD 
Sbjct: 510 AIKYPPADKITDSIRMQMKAHFDTPGAASTESLNNLAAGMNRKAAAMLFYQTCVLASSDY 569

Query: 546 LKVEQNKPYGDILISRGKRM 565
           LKV Q  P+GDI IS+G +M
Sbjct: 570 LKVNQQVPFGDIFISKGTKM 589

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736567|emb|CBI25438.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 325/639 (50%), Positives = 406/639 (63%), Gaps = 99/639 (15%)

Query: 1   MFYSHQLLARKASLGQIW---------MAATMHAKMNRKKLNKLNLIKICEEILNPAVPM 51
           MFYSHQLLARKA+LGQIW         MAATMHAKMNR+KL+KLN+IKICEEILNP+VPM
Sbjct: 1   MFYSHQLLARKAALGQIWRVAFYLLLLMAATMHAKMNRRKLDKLNIIKICEEILNPSVPM 60

Query: 52  ALRLSGILMGGVVIVYEKK-----------IEINAAWKTK--VARDPTLLPKGKSQAKRE 98
           ALRLSGILMGGVVI+YE+K           +E+N AWK K       T LPK KSQAK E
Sbjct: 61  ALRLSGILMGGVVIIYERKLMHCLEIGYLQVELNEAWKVKAGAGSHSTDLPKRKSQAKYE 120

Query: 99  AVTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQN 158
           AVTLP+ +E D  ++E+FLN+ N   T            LD+VD++++  N G +D LQ+
Sbjct: 121 AVTLPDNEEGDAPEIERFLNFSNTATTC-----------LDNVDETYITGNTGGEDVLQD 169

Query: 159 LHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPK-LMPSPP 217
            HQA+ D+ITL E F++YQA+ +  +R ERF  EED E QLNFT  E  QIP  L+PSP 
Sbjct: 170 NHQADADNITLWEPFNSYQADTNLNNRDERF--EEDGEIQLNFTPAE--QIPSTLIPSPS 225

Query: 218 HQDEPQR---ADVIHDQHPEQQ-NQQSNGSKE--EARQDQQRKGPLKRKTRKQAAFAMDY 271
           HQ+E Q+   AD I D HPE Q NQQ +  KE  ++ QDQ R+G ++++ R+ AAF MD 
Sbjct: 226 HQNEHQKGDPADEIQDLHPENQVNQQPDEHKEVNQSEQDQPRQGIIRKRGRRPAAFVMDD 285

Query: 272 DQTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGN 331
           +Q +IPG +YQSWL+D S+I +RR ++RK   +L+  +KIA+LME+PP  LI+ + T G 
Sbjct: 286 EQIIIPGNLYQSWLQDPSNIVARRGKRRK---NLMPIVKIANLMELPPSTLIDGILTSGT 342

Query: 332 REIHYPDPLLKLWMKSTQPPHDSPSARTSPPQPPEPSLSSPPGLGRYEEPAAGYFLKVKP 391
            EI YP PLL+LWM++          R +PPQPPEPS SSP     ++ PA       KP
Sbjct: 343 GEIQYPAPLLELWMRNEAIHSVLCVGRNTPPQPPEPSSSSPSHRVHHQGPAGFVSYSAKP 402

Query: 392 FEDIHSGVGS---------------------------------------------QSIPS 406
           F  I    G+                                             +S P 
Sbjct: 403 FISIEKQRGTNHDNNESQFEILMTSLRTKLMNDNARTTEAVFTPGNSGGATVNEVRSFPG 462

Query: 407 SASGHGILSHNSEVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERS 466
           SASGHG  SH SEVNS R N+KRP S SRHSGS LEPV EE+P    DPNF+LS+LSE  
Sbjct: 463 SASGHGSPSHTSEVNSGRINKKRPYSWSRHSGSSLEPVDEEHPFNHTDPNFKLSKLSEH- 521

Query: 467 STPDPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLN 526
                ELLVET PT T      PPP++KITDSIRM +K+HF+ PGAP+ ESL+ LA+G++
Sbjct: 522 -----ELLVETGPTQTQ-NPIIPPPIEKITDSIRMHLKTHFDTPGAPQRESLDQLASGMD 575

Query: 527 RKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
           R  AA LFYQTCVLAT   +KVEQN+PYGDILISRG +M
Sbjct: 576 RPRAAQLFYQTCVLATRGFIKVEQNEPYGDILISRGAKM 614

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486480|ref|XP_002273379.2| PREDICTED: sister chromatid cohesion 1 protein 1-like [Vitis vinifera]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 318/628 (50%), Positives = 401/628 (63%), Gaps = 101/628 (16%)

Query: 19  MAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKK-------- 70
           MAATMHAKMNR+KL+KLN+IKICEEILNP+VPMALRLSGILMGGVVI+YE+K        
Sbjct: 1   MAATMHAKMNRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIIYERKVKLLYDDV 60

Query: 71  ----IEINAAWKTK--VARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPN-AT 123
               +E+N AWK K       T LPK KSQAK EAVTLP+ +E D  ++E+FLN+ N AT
Sbjct: 61  TRLMVELNEAWKVKAGAGSHSTDLPKRKSQAKYEAVTLPDNEEGDAPEIERFLNFSNTAT 120

Query: 124 ATMEFQ-QNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADT 182
             M  Q Q AY  + LD+VD++++  N G +D LQ+ HQA+ D+ITL E F++YQA+ + 
Sbjct: 121 TVMGLQPQGAYICVCLDNVDETYITGNTGGEDVLQDNHQADADNITLWEPFNSYQADTNL 180

Query: 183 YDRFERFDIEEDTETQLNFTSREQTQIPK-LMPSPPHQDEPQR---ADVIHDQHPEQQ-N 237
            +R ERF  EED E QLNFT  E  QIP  L+PSP HQ+E Q+   AD I D HPE Q N
Sbjct: 181 NNRDERF--EEDGEIQLNFTPAE--QIPSTLIPSPSHQNEHQKGDPADEIQDLHPENQVN 236

Query: 238 QQSNGSKE--EARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRR 295
           QQ +  KE  ++ QDQ R+G ++++ R+ AAF MD +Q +IPG +YQSWL+D S+I +RR
Sbjct: 237 QQPDEHKEVNQSEQDQPRQGIIRKRGRRPAAFVMDDEQIIIPGNLYQSWLQDPSNIVARR 296

Query: 296 RRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSP 355
            ++RK   +L+  +KIA+LME+PP  LI+ + T G  EI YP PLL+LWM+S Q PHDSP
Sbjct: 297 GKRRK---NLMPIVKIANLMELPPSTLIDGILTSGTGEIQYPAPLLELWMRSIQLPHDSP 353

Query: 356 SARTSPPQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILS 415
           S R +PPQPPEPS SSP     ++ P AG+     PFED  SGVGS S+  S       +
Sbjct: 354 SGRNTPPQPPEPSSSSPSHRVHHQGP-AGF-----PFEDFLSGVGSPSLGVSIEKQRGTN 407

Query: 416 HNSE------------------------------------VNSSRS-------------- 425
           H++                                     VN  RS              
Sbjct: 408 HDNNESQFEILMTSLRTKLMNDNARTTEAVFTPGNSGGATVNEVRSFPGSASGHGSPSHT 467

Query: 426 --------NQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVET 477
                   N+KRP S SRHSGS LEPV EE+P    DPNF+LS+LSE       ELLVET
Sbjct: 468 SEVNSGRINKKRPYSWSRHSGSSLEPVDEEHPFNHTDPNFKLSKLSEH------ELLVET 521

Query: 478 APTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQT 537
            PT T      PPP++KITDSIRM +K+HF+ PGAP+ ESL+ LA+G++R  AA LFYQT
Sbjct: 522 GPTQTQ-NPIIPPPIEKITDSIRMHLKTHFDTPGAPQRESLDQLASGMDRPRAAQLFYQT 580

Query: 538 CVLATSDVLKVEQNKPYGDILISRGKRM 565
           CVLAT   +KVEQN+PYGDILISRG +M
Sbjct: 581 CVLATRGFIKVEQNEPYGDILISRGAKM 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806559|ref|XP_002871163.1| DIF1/SYN1 [Arabidopsis lyrata subsp. lyrata] gi|297317000|gb|EFH47422.1| DIF1/SYN1 [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 297/636 (46%), Positives = 372/636 (58%), Gaps = 88/636 (13%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFYSHQLLARKA LGQIWMAAT+HAK+NRKKL+KL++I+ICEEILNP+VPMALRLSGILM
Sbjct: 1   MFYSHQLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILM 60

Query: 61  GGVVIVYEKK------------IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKET 108
           GGVVIVYE+K            +EIN AW+TK   DPTLLPKG++ A++EAVTLPE +E 
Sbjct: 61  GGVVIVYERKVKLLFDDVNRLLVEINGAWRTKAVPDPTLLPKGRTHARKEAVTLPENEEA 120

Query: 109 DVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDIT 168
           D  D EQ  N P     M+FQQ  + SMRL   D+S + +N   +D  Q  HQA+ ++IT
Sbjct: 121 DFGDFEQTRNIPKYGNYMDFQQ-TFISMRL---DESHVNNNPEPEDLGQQFHQADAENIT 176

Query: 169 LTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPP-HQDEPQRAD 226
           L E   ++Q N +TYDRFERFDIE D ETQ+NF  RE  +IP  L+PSPP H D P+  +
Sbjct: 177 LFEYHGSFQTNNETYDRFERFDIEGDDETQMNFNPREGAEIPTTLIPSPPRHHDIPEGVN 236

Query: 227 VIHDQHPEQQNQQSNGSKEEA-------RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGE 279
               Q  EQQ ++ +G  E+        +++  R  P K++ RK A  AMDY+QT+I G 
Sbjct: 237 PTSPQLHEQQERRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGH 296

Query: 280 VYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDP 339
           VYQSWL+D SDI   R  KRK    +   MKI     MPP  L E      + E  YP  
Sbjct: 297 VYQSWLQDTSDILC-RGEKRKVRGTIRPEMKIFKRANMPPTQLFEK-----HVESSYPPQ 350

Query: 340 LLKLWMKSTQPPHDSPSARTSPPQPPEPS--------------------------LSSPP 373
           L +LW K+TQ    S S    P    E S                          L SP 
Sbjct: 351 LYELWSKNTQVLQTSSSETRRPDLCAEQSPGFVQERMQNHHQTDHHERSDTSSQNLGSPA 410

Query: 374 GLGRYEEPAAGYFLK---------------------VKPFEDIHSGVGSQSIPSSASGHG 412
            + R      G  ++                     V PF   +SG   +S+PS+ S  G
Sbjct: 411 EILRTVRTGKGASVESMMAGSRASPETINRQAADINVTPF---YSGDDVRSMPSTPSARG 467

Query: 413 ILSHNSEVNSSRS---NQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTP 469
             S N+   SS+S   ++KRP SS R    GLEPVAEE P    + +F  S L E+  T 
Sbjct: 468 AASVNNIEISSKSRMFDRKRPTSSPRR---GLEPVAEERPWEHREYDFEFSILPEKRFTA 524

Query: 470 DPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKA 529
           D E+L ETA T T  PV N    +KITDSI+  +K+HFE PGAP+VESLN LA G++R A
Sbjct: 525 DKEILFETASTQTQKPVCNQSD-EKITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNA 583

Query: 530 AAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
           AA LF+Q+CVLAT  V+KV Q +PYGDILI+RG  M
Sbjct: 584 AAKLFFQSCVLATRGVIKVNQTQPYGDILIARGPNM 619

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239141|ref|NP_196168.1| Sister chromatid cohesion 1 protein 1 [Arabidopsis thaliana] gi|6453715|gb|AAF08981.1|AF080619_1 SYN1 splice variant 1 [Arabidopsis thaliana] gi|6682281|emb|CAB64643.1| cohesin [Arabidopsis thaliana] gi|10178126|dbj|BAB11538.1| SYN1 splice variant 1 [Arabidopsis thaliana] gi|332003497|gb|AED90880.1| Sister chromatid cohesion 1 protein 1 [Arabidopsis thaliana]

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 294/636 (46%), Positives = 367/636 (57%), Gaps = 90/636 (14%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFYSHQLLARKA LGQIWMAAT+HAK+NRKKL+KL++I+ICEEILNP+VPMALRLSGILM
Sbjct: 1   MFYSHQLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILM 60

Query: 61  GGVVIVYEKK------------IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKET 108
           GGVVIVYE+K            +EIN AW+TK   DPTLLPKGK+ A++EAVTLPE +E 
Sbjct: 61  GGVVIVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEA 120

Query: 109 DVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDIT 168
           D  D EQ  N P     M+FQQ  + SMRL   D+S + +N   +D  Q  HQA+ ++IT
Sbjct: 121 DFGDFEQTRNVPKFGNYMDFQQ-TFISMRL---DESHVNNNPEPEDLGQQFHQADAENIT 176

Query: 169 LTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPP-HQDEPQRAD 226
           L E   ++Q N +TYDRFERFDIE D ETQ+N   RE  +IP  L+PSPP H D P+  +
Sbjct: 177 LFEYHGSFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVN 236

Query: 227 VIHDQHPEQQNQQSNGSKEEA-------RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGE 279
               Q  EQQ  + +G  E+        +++  R  P K++ RK A  AMDY+QT+I G 
Sbjct: 237 PTSPQRQEQQENRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGH 296

Query: 280 VYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDP 339
           VYQSWL+D SDI   R  KRK    +   M+      MPP  L E       ++  YP  
Sbjct: 297 VYQSWLQDTSDILC-RGEKRKVRGTIRPDMESFKRANMPPTQLFE-------KDSSYPPQ 348

Query: 340 LLKLWMKSTQPPHDSPSARTSPPQPPEPS--------------------------LSSPP 373
           L +LW K+TQ    S S    P    E S                          L SP 
Sbjct: 349 LYQLWSKNTQVLQTSSSESRHPDLRAEQSPGFVQERMHNHHQTDHHERSDTSSQNLDSPA 408

Query: 374 GLGRYEEPAAGYFLK---------------------VKPFEDIHSGVGSQSIPSSASGHG 412
            + R      G  ++                     V PF   +SG   +S+PS+ S  G
Sbjct: 409 EILRTVRTGKGASVESMMAGSRASPETINRQAADINVTPF---YSGDDVRSMPSTPSARG 465

Query: 413 ILSHNSEVNSSRS---NQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTP 469
             S N+   SS+S   N+KRP SS R    GLEPVAEE P    +  F  S L E+  T 
Sbjct: 466 AASINNIEISSKSRMPNRKRPNSSPRR---GLEPVAEERPWEHREYEFEFSMLPEKRFTA 522

Query: 470 DPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKA 529
           D E+L ETA T T  PV N    + ITDSI+  +K+HFE PGAP+VESLN LA G++R A
Sbjct: 523 DKEILFETASTQTQKPVCNQSD-EMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNA 581

Query: 530 AAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
           AA LF+Q+CVLAT  V+KV Q +PYGDILI+RG  M
Sbjct: 582 AAKLFFQSCVLATRGVIKVNQAEPYGDILIARGPNM 617

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804656|emb|CAN73339.1| hypothetical protein VITISV_042401 [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/605 (48%), Positives = 377/605 (62%), Gaps = 94/605 (15%)

Query: 41  CEEILNPAVPMALRLSGILM-----------GGVVIVYEKK-----------IEINAAWK 78
           CEEILNP+VPMALRLSGILM           GGVVI+YE+K           +E+N AWK
Sbjct: 7   CEEILNPSVPMALRLSGILMVTVEVLSPLYSGGVVIIYERKLMHCLEIGYLQVELNEAWK 66

Query: 79  TK--VARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPN-ATATMEFQ-QNAYF 134
            K       T LPK KSQAK EAVTLP+ +E D  ++E+FLN+ N AT  M  Q Q AY 
Sbjct: 67  VKAGAGSHSTDLPKRKSQAKYEAVTLPDNEEGDAPEIERFLNFSNTATTVMGLQPQGAYI 126

Query: 135 SMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEED 194
            + LD+VD++++  N G +D LQ+ HQA+ D+ITL E F++YQA+ +  +R ERF  EED
Sbjct: 127 CVCLDNVDETYITGNTGGEDVLQDNHQADADNITLWEPFNSYQADTNLNNRDERF--EED 184

Query: 195 TETQLNFTSREQTQIPK-LMPSPPHQDEPQR---ADVIHDQHPEQQ-NQQSNGSKE--EA 247
            E QLNFT  E  QIP  L+PSP HQ+E Q+   AD I D HPE Q NQQ +  KE  ++
Sbjct: 185 GEIQLNFTPAE--QIPSTLIPSPSHQNEHQKGXPADEIQDLHPENQVNQQPDEHKEVNQS 242

Query: 248 RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLS 307
            QDQ R+G ++++ R+ AAF MD +Q +IPG +YQSWL+D S+I +RR ++RK   +L+ 
Sbjct: 243 EQDQPRQGIIRKRGRRPAAFVMDDEQIIIPGNLYQSWLQDPSNIVARRGKRRK---NLMP 299

Query: 308 TMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTSPPQPPEP 367
            +KIA+LME+PP  LI+ + T G  EI YP PLL+LWM+S Q PHDSPS R +PPQPPEP
Sbjct: 300 XVKIANLMELPPSTLIDGILTSGTGEIQYPAPLLELWMRSIQLPHDSPSGRNTPPQPPEP 359

Query: 368 SLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSHNSE-------- 419
           S SSP     ++ P AG+     PFED  SGVGS S+  S       +H++         
Sbjct: 360 SSSSPSHRVHHQGP-AGF-----PFEDFLSGVGSPSLGVSIEKQRGTNHDNNESQFEILM 413

Query: 420 ----------------------------VNSSRS-----------NQKRPRSSSRHSGSG 440
                                       VN  RS           +     +S RHSGS 
Sbjct: 414 TSLRTKLMNDNARTTEAVFTPGNSGGATVNEVRSFPGSASGHGSPSHTSEVNSGRHSGSS 473

Query: 441 LEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPVPVTNPPPVDKITDSIR 500
           LEPV EE+P    DPNF+LS+LSE    P+ ELLVET PT T      PPP++KITDSIR
Sbjct: 474 LEPVDEEHPFNHTDPNFKLSKLSEDFMMPEHELLVETGPTQTQ-NPIIPPPIEKITDSIR 532

Query: 501 MQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILIS 560
           M +K+HF+ PGAP+ ESL+ LA+G++R  AA LFYQTCVLAT   +KVEQN+PYGDILIS
Sbjct: 533 MHLKTHFDTPGAPQRESLDQLASGMDRPRAAQLFYQTCVLATRGFIKVEQNEPYGDILIS 592

Query: 561 RGKRM 565
           RG +M
Sbjct: 593 RGAKM 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680958|ref|NP_850773.1| Sister chromatid cohesion 1 protein 1 [Arabidopsis thaliana] gi|30913299|sp|Q9S7T7.2|SCC11_ARATH RecName: Full=Sister chromatid cohesion 1 protein 1; AltName: Full=Protein DETERMINATE INFERTILE 1; AltName: Full=SCC1 homolog 1 gi|6453717|gb|AAF08982.1|AF080620_1 SYN1 splice variant 2 [Arabidopsis thaliana] gi|332003496|gb|AED90879.1| Sister chromatid cohesion 1 protein 1 [Arabidopsis thaliana]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 288/630 (45%), Positives = 361/630 (57%), Gaps = 90/630 (14%)

Query: 7   LLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIV 66
           LLARKA LGQIWMAAT+HAK+NRKKL+KL++I+ICEEILNP+VPMALRLSGILMGGVVIV
Sbjct: 17  LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76

Query: 67  YEKK------------IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLE 114
           YE+K            +EIN AW+TK   DPTLLPKGK+ A++EAVTLPE +E D  D E
Sbjct: 77  YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136

Query: 115 QFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFD 174
           Q  N P     M+FQQ  + SMRL   D+S + +N   +D  Q  HQA+ ++ITL E   
Sbjct: 137 QTRNVPKFGNYMDFQQ-TFISMRL---DESHVNNNPEPEDLGQQFHQADAENITLFEYHG 192

Query: 175 TYQANADTYDRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPP-HQDEPQRADVIHDQH 232
           ++Q N +TYDRFERFDIE D ETQ+N   RE  +IP  L+PSPP H D P+  +    Q 
Sbjct: 193 SFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVNPTSPQR 252

Query: 233 PEQQNQQSNGSKEEA-------RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWL 285
            EQQ  + +G  E+        +++  R  P K++ RK A  AMDY+QT+I G VYQSWL
Sbjct: 253 QEQQENRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWL 312

Query: 286 KDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWM 345
           +D SDI   R  KRK    +   M+      MPP  L E       ++  YP  L +LW 
Sbjct: 313 QDTSDILC-RGEKRKVRGTIRPDMESFKRANMPPTQLFE-------KDSSYPPQLYQLWS 364

Query: 346 KSTQPPHDSPSARTSPPQPPEPS--------------------------LSSPPGLGRYE 379
           K+TQ    S S    P    E S                          L SP  + R  
Sbjct: 365 KNTQVLQTSSSESRHPDLRAEQSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEILRTV 424

Query: 380 EPAAGYFLK---------------------VKPFEDIHSGVGSQSIPSSASGHGILSHNS 418
               G  ++                     V PF   +SG   +S+PS+ S  G  S N+
Sbjct: 425 RTGKGASVESMMAGSRASPETINRQAADINVTPF---YSGDDVRSMPSTPSARGAASINN 481

Query: 419 EVNSSRS---NQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLV 475
              SS+S   N+KRP SS R    GLEPVAEE P    +  F  S L E+  T D E+L 
Sbjct: 482 IEISSKSRMPNRKRPNSSPRR---GLEPVAEERPWEHREYEFEFSMLPEKRFTADKEILF 538

Query: 476 ETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFY 535
           ETA T T  PV N    + ITDSI+  +K+HFE PGAP+VESLN LA G++R AAA LF+
Sbjct: 539 ETASTQTQKPVCNQSD-EMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNAAAKLFF 597

Query: 536 QTCVLATSDVLKVEQNKPYGDILISRGKRM 565
           Q+CVLAT  V+KV Q +PYGDILI+RG  M
Sbjct: 598 QSCVLATRGVIKVNQAEPYGDILIARGPNM 627

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
TAIR|locus:2169667	627	SYN1 "SYNAPTIC 1" [Arabidopsis	0.447	0.403	0.512	3.4e-92
TAIR|locus:2097548	693	SYN3 "AT3G59550" [Arabidopsis	0.461	0.376	0.277	7.7e-18
MGI|MGI:108016	635	Rad21 "RAD21 homolog (S. pombe	0.283	0.251	0.305	4.4e-15
FB|FBgn0260987	715	vtd "verthandi" [Drosophila me	0.304	0.240	0.3	4.8e-15
RGD|1594529	635	Rad21 "RAD21 homolog (S. pombe	0.283	0.251	0.305	5.5e-15
UNIPROTKB|O60216	631	RAD21 "Double-strand-break rep	0.336	0.301	0.293	6.6e-15
TAIR|locus:2181457	1031	SYN4 "sister chromatid cohesio	0.198	0.108	0.368	1.7e-14
UNIPROTKB|E2QRU9	631	RAD21 "Uncharacterized protein	0.283	0.253	0.305	2.2e-14
UNIPROTKB|F1S1K0	631	LOC100738633 "Uncharacterized	0.283	0.253	0.305	2.2e-14
UNIPROTKB|Q3SWX9	630	RAD21 "Double-strand-break rep	0.283	0.253	0.305	2.8e-14

TAIR|locus:2169667 SYN1 "SYNAPTIC 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 141/275 (51%), Positives = 175/275 (63%)

Query:     7 LLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILMGGVVIV 66
             LLARKA LGQIWMAAT+HAK+NR           CEEILNP+VPMALRLSGILMGGVVIV
Sbjct:    17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76

Query:    67 YEKKI------------EINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLE 114
             YE+K+            EIN AW+TK   DPTLLPKGK+ A++EAVTLPE +E D  D E
Sbjct:    77 YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136

Query:   115 QFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFD 174
             Q  N P     M+FQQ  + SMRLD+   S + +N   +D  Q  HQA+ ++ITL E   
Sbjct:   137 QTRNVPKFGNYMDFQQT-FISMRLDE---SHVNNNPEPEDLGQQFHQADAENITLFEYHG 192

Query:   175 TYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPK-LMPSPP-HQDEPQRADVIHDQH 232
             ++Q N +TYDRFERFDIE D ETQ+N   RE  +IP  L+PSPP H D P+    ++   
Sbjct:   193 SFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEG---VNPTS 249

Query:   233 PEQQNQQSNGSKEEARQDQQRKGPLKRK-TRKQAA 266
             P++Q QQ N     A Q +++  P K +  R Q A
Sbjct:   250 PQRQEQQENRRDGFAEQMEEQNIPDKEEHDRPQPA 284

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA;IMP

GO:0010032 "meiotic chromosome condensation" evidence=IMP

GO:0008278 "cohesin complex" evidence=ISS

GO:0005694 "chromosome" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IMP

GO:0051754 "meiotic sister chromatid cohesion, centromeric" evidence=IMP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
 Identities = 79/285 (27%), Positives = 113/285 (39%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFYSH LLARK  LG +W AA +H ++ +            + I+ P VP+ALR S  L+
Sbjct:     1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query:    61 GGVVIVYEKKIE-INAAWK---TKVAR----DPTLLPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y KK++ +   W    T VA+        LP+   QA  E+VTLP+    D  D
Sbjct:    61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
             LE      + T  MEF  +      +   D    Q   G+D  +      ++  I+ +  
Sbjct:   121 LE------DDTLDMEFDNHTRSEEDITLTD----QIPTGIDPYVAVTFDEDI--ISESIP 168

Query:   173 FDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQH 232
              D  Q+           D+E   ET  +   R+           P     +  +V   Q 
Sbjct:   169 MDVDQSTEPVSRHTGEIDVETAHETGPDNEPRDSNIAFDTGTYSPRNVTEEFTEV---QD 225

Query:   233 PEQQNQQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIP 277
             P Q N          R D    G +    R + A A D   T  P
Sbjct:   226 PRQSNLTEERIPNSERNDATSPGTVPEIERMRDA-AHDLSPTSHP 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0000798 "nuclear cohesin complex" evidence=ISS

GO:0007067 "mitosis" evidence=IEP

GO:0005730 "nucleolus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009561 "megagametogenesis" evidence=IMP

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

MGI|MGI:108016 Rad21 "RAD21 homolog (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY+H +L+++  L +IW+AA    K+ +            E I++P V MALR SG L+
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
              +Q L  P+       QQ   FS+    V++  ++  VG   ++  L + +  D  + +R
Sbjct:   117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008278 "cohesin complex" evidence=IDA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0071168 "protein localization to chromatin" evidence=ISO

FB|FBgn0260987 vtd "verthandi" [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
 Identities = 57/190 (30%), Positives = 89/190 (46%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY H +LA+K  L +IW+AA    K+ +            E IL P V +ALR SG L+
Sbjct:     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEI------- 105
              GVV +Y +K      + N A+ K K+A  P +  LP+G  +A   A+TLPE+       
Sbjct:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTA 120

Query:   106 -KETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANV 164
               E +  D+E   +   + A     +  Y S+ L   DD F   ++G +     + + ++
Sbjct:   121 LPELNDIDIEAQFSINQSRADEITMREDYGSLSLSLQDDGF--GDIGFEAETPEIIRCSI 178

Query:   165 DDITLTERFD 174
                   + FD
Sbjct:   179 PSNINDKIFD 188

GO:0006289 "nucleotide-excision repair" evidence=NAS

GO:0008278 "cohesin complex" evidence=ISS;IDA;NAS;IPI

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISS;IMP;NAS

GO:0000775 "chromosome, centromeric region" evidence=NAS

GO:0007067 "mitosis" evidence=IMP

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005705 "polytene chromosome interband" evidence=IDA

GO:0016322 "neuron remodeling" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IGI

RGD|1594529 Rad21 "RAD21 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY+H +L+++  L +IW+AA    K+ +            E I++P V MALR SG L+
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
              +Q L  P+       QQ   FS+    V++  ++  VG   ++  L + +  D  + +R
Sbjct:   117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168

GO:0005634 "nucleus" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008278 "cohesin complex" evidence=ISO

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO

GO:0071168 "protein localization to chromatin" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
 Identities = 63/215 (29%), Positives = 102/215 (47%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY+H +L+++  L +IW+AA    K+ +            E I++P V MALR SG L+
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
              +Q L  P+       QQ   FS+    V++  ++  VG   ++  L + +  D  + +R
Sbjct:   117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168

Query:   173 FDTYQANADTYDRFERFDIEEDTETQLNFTSREQT 207
                 + +A     FE  D+   T T       EQ+
Sbjct:   169 EIMREGSA-----FEDDDMLVSTTTSNLLLESEQS 198

GO:0006915 "apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071168 "protein localization to chromatin" evidence=IMP

GO:0006302 "double-strand break repair" evidence=TAS

GO:0006310 "DNA recombination" evidence=TAS

GO:0007131 "reciprocal meiotic recombination" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007091 "metaphase/anaphase transition of mitotic cell cycle" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008278 "cohesin complex" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
 Identities = 45/122 (36%), Positives = 63/122 (51%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFYS  +LA+K  LG IW+AA +  K+ +            + IL P  P+ALRLS  L+
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 GGVVIVYEKKIEI------NAAWKTKVA-RDPTL-LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K+         A  K K A R   + LP  +S A   ++TLPE    D++D
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPET--FDLDD 118

Query:   113 LE 114
              E
Sbjct:   119 FE 120

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY+H +L+++  L +IW+AA    K+ +            E I++P V MALR SG L+
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
              +Q L  P+       QQ   FS+    V++  ++  VG   ++  L + +  D  + +R
Sbjct:   117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168

GO:0071168 "protein localization to chromatin" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY+H +L+++  L +IW+AA    K+ +            E I++P V MALR SG L+
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
              +Q L  P+       QQ   FS+    V++  ++  VG   ++  L + +  D  + +R
Sbjct:   117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168

GO:0000228 "nuclear chromosome" evidence=IEA

UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:     1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
             MFY+H +L+++  L +IW+AA    K+ +            E I++P V MALR SG L+
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
              GVV +Y +K      + N A+ K K+A  P +  LP+   +A   A+TLPE    +  D
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116

Query:   113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
              +Q L  P+       QQ   FS+    V++  ++  VG   ++  L + +  D  + +R
Sbjct:   117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168

GO:0071168 "protein localization to chromatin" evidence=ISS

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7T7	SCC11_ARATH	No assigned EC number	0.4571	0.9557	0.8612	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000625 hypothetical protein (606 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	565
pfam04825	110	pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec	2e-28
pfam04824	55	pfam04824, Rad21_Rec8, Conserved region of Rad21 /	5e-17
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002

>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein

 Score =  109 bits (274), Expect = 2e-28
 Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 7/110 (6%)

Query: 1   MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
           MFYSH+LL +K  L  +W+AAT+  K++RK++ ++++ K CEEILNP  P+ALRLSG L+
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  GGVVIVYEKKIE------INAAWKTKVA-RDPTLLPKGKSQAKREAVTLP 103
            GVV +Y +K+E        A  + K A R P  L   + +A   A+TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLPERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

>gnl|CDD|113590 pfam04824, Rad21_Rec8, Conserved region of Rad21 / Rec8 like protein

 Score = 74.7 bits (184), Expect = 5e-17
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
              + +SL+ L AG  RK AA LFY+  VL T   + V+Q +PYGDILI+ G ++
Sbjct: 1   TEGEKDSLSQLPAGTTRKEAARLFYELLVLKTEGAIDVKQEEPYGDILITAGPKL 55

This family represents a conserved region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 55

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 31/148 (20%), Positives = 41/148 (27%), Gaps = 15/148 (10%)

Query: 336 YPDPLLKLWMKSTQPPHDSPSARTSPPQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDI 395
            P P        T+    S     S    P  S SSP        P              
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP-------------S 301

Query: 396 HSGVGSQSIPSSASGHGILSHNSEVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSRFPDP 455
             G G       AS     S  S  +S+ S+ +  R ++   G         +PSR P P
Sbjct: 302 SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSP--SPSRPPPP 359

Query: 456 NFRLSRLSERSSTPDPELLVETAPTPTP 483
               S       +  P     +A  PT 
Sbjct: 360 ADPSSPRKRPRPSRAPSSPAASAGRPTR 387

Length = 1352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	565
KOG1213	614	consensus Sister chromatid cohesion complex Cohesi	100.0
PF04825	111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	99.97
PF04824	55	Rad21_Rec8: Conserved region of Rad21 / Rec8 like	99.74
PF02616	242	ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 Thi	95.83
PRK00104	242	scpA segregation and condensation protein A; Revie	95.07
COG1354	248	scpA Rec8/ScpA/Scc1-like protein (kleisin family)	89.71

>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4e-56  Score=485.55  Aligned_cols=518  Identities=23%  Similarity=0.249  Sum_probs=287.2

Q ss_pred             CCcchhhhhcCCChhHHHHHhhcCccccchhhccccHHHHHHHHcCCCCcchhhhhhcccccEEEEEeehh-----hHHH
Q 008432            1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKI-----EINA   75 (565)
Q Consensus         1 MFYS~~LLskkgpLa~IWLAAt~~~KLsKk~il~~nI~~sce~Il~p~~PlALRLSg~LLlGVVRIYsrK~-----Dcne   75 (565)
                      |||||.||+||||||+|||||||++||+|+||+.|||+++|++|++|.+|||||+|||||+||||||||||     |||+
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999     9999


Q ss_pred             Hh-hhhccCCC--cCCCCCCCCCCCcccccCCCCCCCcchhhhhccCCCcchhhhhhhhhhcccccC-CCCcccccCCCC
Q 008432           76 AW-KTKVARDP--TLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATMEFQQNAYFSMRLD-DVDDSFLQSNVG  151 (565)
Q Consensus        76 a~-Kik~a~~~--~dLp~~~~~A~~~aITLPd~~~~D~~d~e~~~~~p~~~~~~~~~~~~~~~~~~~-~lde~f~~~~~~  151 (565)
                      |+ |||++|++  +|+|.....+...+||||+.++.|.+++..  .++..+....|+.     .... +|++......+.
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~--~~~~~~~~~~~~~-----~~~~~~lde~~~~~~~~  153 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD--EITDIDLYDDFSI-----PQSRNNLDEITLLEDIE  153 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc--cccccccccccCc-----cccccchhhhhcccCCC
Confidence            98 99999754  789988778888889999999966555442  2222221111111     0001 222222222221


Q ss_pred             CCccccccccCCCCCccccccccccccCccccCcccccCCccccccccccCCccccCCC-CCCCCCCCCCCC-C--c---
Q 008432          152 VDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPPHQDEP-Q--R---  224 (565)
Q Consensus       152 ~~d~~~~~hqA~~e~ITL~e~~~~~~~~~d~~~r~erf~i~ed~e~~~~~t~~e~~~~p-~l~Ps~p~~~e~-~--~---  224 (565)
                      .  .....+|.+.+.++..+.  .....+..+..+.+.++..++....+..+.+.+..| ++..+....+.. .  .   
T Consensus       154 ~--~~~~~~q~~~~~g~~~~~--~~~~~~~~~~E~~~~~~~~~s~~~~d~~~~~~~~tp~~~~e~~~s~~~~~~~~~~~~  229 (614)
T KOG1213|consen  154 Q--LSIESLQLDDEFGEDFEG--APTPHNETYMESFRHDMENDSALTEDSIFIEGPTTPNLVLESERSRSREEPGSNEDD  229 (614)
T ss_pred             C--Cccccccccccccccccc--ccccccccccchhccccccccccccccccccCCCCCcccccCccccccccccccccc
Confidence            1  012334444444444332  112222333444444442222222223332233334 222211111110 0  0   


Q ss_pred             --ccc------ccCC----------CCccccc---------------cCC----Cchh----hH---hhhcCCCCchhhh
Q 008432          225 --ADV------IHDQ----------HPEQQNQ---------------QSN----GSKE----EA---RQDQQRKGPLKRK  260 (565)
Q Consensus       225 --~~~------~~~~----------~P~~~~~---------------q~~----~~~e----~~---~~~p~~~~~~rrr  260 (565)
                        .+.      .+.+          ..+++..               ..+    ...|    .|   ..-.+-...  ++
T Consensus       230 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~E~~~~ap~~~~~~~~~~~~--~~  307 (614)
T KOG1213|consen  230 EDGDEEEDDRGTQGSESPTENNIHKVEDHDSSEENNLDDGETSAFEDPPTSPEEAEEERALPAPVGIESVSHDEPD--SI  307 (614)
T ss_pred             cchhhhhhhhccccCCCcchhhccCCcccccccccccccccccccccCCcccccCcccccccCCCCccccccCCcc--hh
Confidence              000      0001          1111100               000    0000    01   111111122  22


Q ss_pred             hccccceeccccccccchhHHHHHhccccchhhHhhhhcccchhhhhhhhhhhhc-cCCccchhhhhccCCCCcccCChh
Q 008432          261 TRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLM-EMPPVVLIEDLFTKGNREIHYPDP  339 (565)
Q Consensus       261 ~r~~~~~~~D~eqT~Ip~~~yQ~wLqd~sdiv~rr~~~~k~~~~~~~~~k~a~~~-e~P~v~l~~~~~~ks~~~~~~p~~  339 (565)
                      +++..++.+|+ .|+|.++.++.+|.|.|+|.++.        ++.+..  ..+| -+.-.-+. ++      ..+-.+.
T Consensus       308 ~~~~r~~~vd~-~~~l~~~~~~~ql~d~s~~~~~~--------~~~Pp~--~~l~~~~~~~~~~-~~------~~~~~~~  369 (614)
T KOG1213|consen  308 LRRKRKLSVDG-VTLLSEEEFKEQLADFSDILTSL--------DLAPPT--RVLMMPKETGRVE-KL------FSSPEPD  369 (614)
T ss_pred             ccccccccccc-ceecCchhHHhhhcChhhhcccc--------ccCChH--HHhhccccccchh-hh------ccCCCcc
Confidence            23333478898 99999999999999999999762        222222  1222 11111111 11      1112233


Q ss_pred             HHHHHHHhcCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCccCCCccccc---------------cCCCc-c-
Q 008432          340 LLKLWMKSTQPPHD---------SPSARTSPPQPPEPSLSSPPGLGRYEEPAAGYFL---------------KVKPF-E-  393 (565)
Q Consensus       340 Ll~LW~~~tq~p~~---------~~s~~~~~~~~~e~~~~~~~~~~~~e~e~~~~~~---------------~~~~~-~-  393 (565)
                      +..-|+.|++....         .-..+...+.     +.....+...+.+.....+               ..++. . 
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  444 (614)
T KOG1213|consen  370 LFANRLLFTGRLFLSLESLKPEDSVNREEGSSN-----SDEFLREIERDVEPLSPANVSVASLDVSKQESPEQASDAVSR  444 (614)
T ss_pred             cccccccccccchhhhhcccccccccccccccc-----cccchhhcCCchhcccCcccccccccCCcccChhhhcccccc
Confidence            33344444442211         1000111000     0111112222221111111               01111 1 


Q ss_pred             ccCCCCCccccCCCCCCCCCCcccc---cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 008432          394 DIHSGVGSQSIPSSASGHGILSHNS---EVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPD  470 (565)
Q Consensus       394 di~~g~~v~s~p~~~Sg~g~~s~~~---~l~s~~~~~kr~~~ss~~S~~~L~pveE~~p~~~~~~~f~~~rL~~~~~tPd  470 (565)
                      ++.++++.+.....+...++.+..+   ..++-.-+-++ ..++.  +.+.....+...|+.....++.+...+....+.
T Consensus       445 ~~~~~~~~~~~~~~~~aq~~~~~~~~~~~~~~~~~~~~~-p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (614)
T KOG1213|consen  445 EFLSPLEPREEDSIPDAQSMPSQDNILIPKEVPTPNPEP-PLSSP--FRGPGFTVESNEWESTPYGDEFPMAAEKADLEG  521 (614)
T ss_pred             cccCCcchhhcccCCCcccccccccccccccccCcccCC-CCCcc--ccCCccccccccccccccccccccccccccchh
Confidence            2234445555555555555555433   11111111111 11111  224555666677887777778888888888888


Q ss_pred             cccccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhhhcCCCCCcchhhhhc-cCCcHHHHHHHHHHHHHhhhcCeEEee
Q 008432          471 PELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLA-AGLNRKAAAMLFYQTCVLATSDVLKVE  549 (565)
Q Consensus       471 ~ell~Et~pt~t~~~~~~~~p~~~~t~~v~~~l~~~f~~~g~p~~~sL~~l~-~g~tRk~AAr~FY~~lVL~t~~~i~Ve  549 (565)
                      .+.|. ++.|+++..    .-+.++++.+...++.+..++|.   .++++|+ .|++||+|||+||++|||||+++|+|+
T Consensus       522 ~~~l~-~~~t~~~~~----~~~~k~~~~~~~~~~~~~~~~~~---~e~~~~l~~~~~Rk~Aa~~Ff~~LvLkt~~~i~v~  593 (614)
T KOG1213|consen  522 EEGLS-PGGTETQEE----RELAKRTEQILTSIQLEPETNGQ---IELSELLPNGPNRKQAARKFFSLLVLKTRQAIEVK  593 (614)
T ss_pred             hhccC-CCcccccch----HHHHHHHHHhhcccccccCCccc---hhHHHhccCCCCHHHHHHHHHHHHHHhhccccccc
Confidence            77776 666666663    35667777777766644455665   4455554 556999999999999999999999999


Q ss_pred             ccCCCcceeeccCCCC
Q 008432          550 QNKPYGDILISRGKRM  565 (565)
Q Consensus       550 Q~~pYgdI~I~~gpk~  565 (565)
                      |.+|||||+|.+||+|
T Consensus       594 Q~epygdI~i~~gp~~  609 (614)
T KOG1213|consen  594 QDEPYGDIIITPGPNF  609 (614)
T ss_pred             cCCcccceeeccCccc
Confidence            9999999999999986

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families

Probab=99.97  E-value=4.5e-32  Score=240.61  Aligned_cols=103  Identities=46%  Similarity=0.789  Sum_probs=98.8

Q ss_pred             CCcchhhhhcCCChhHHHHHhhcCccccchhhccccHHHHHHHHcCCCCcchhhhhhcccccEEEEEeehh-----hHHH
Q 008432            1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIVYEKKI-----EINA   75 (565)
Q Consensus         1 MFYS~~LLskkgpLa~IWLAAt~~~KLsKk~il~~nI~~sce~Il~p~~PlALRLSg~LLlGVVRIYsrK~-----Dcne   75 (565)
                      ||||++||+|+|+|++||+|||+|+||+|++|+++||+++|++|++|..|+|||+|||||+||||||++|+     ||++
T Consensus         1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~   80 (111)
T PF04825_consen    1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE   80 (111)
T ss_pred             CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999     9999


Q ss_pred             Hh-hhhccC--CCcCCCCCCCCCCCcccccC
Q 008432           76 AW-KTKVAR--DPTLLPKGKSQAKREAVTLP  103 (565)
Q Consensus        76 a~-Kik~a~--~~~dLp~~~~~A~~~aITLP  103 (565)
                      ++ +++.++  ..+|+|+++..|+.++||||
T Consensus        81 ~~~~l~~~~~~~~~dl~~~~~~~~~~~it~p  111 (111)
T PF04825_consen   81 LLSKLKRAFRPKKIDLPKDKTKASRNAITLP  111 (111)
T ss_pred             HHHHHHHHhcccccCCCccccCCChhhccCc
Confidence            97 888765  46899998899999999998

Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding

>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families

Probab=99.74  E-value=6.7e-19  Score=139.98  Aligned_cols=52  Identities=46%  Similarity=0.708  Sum_probs=37.3

Q ss_pred             CcchhhhhccCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeeccCCCC
Q 008432          514 KVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM  565 (565)
Q Consensus       514 ~~~sL~~l~~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gpk~  565 (565)
                      +.++++.|+.|++|++|||+||++|||+++|+|+|+|++|||||.|++||+|
T Consensus         4 ~~~~~~~l~~~~tr~~AA~~Fy~~LvL~t~~~I~v~Q~~pygdI~I~~~~~~   55 (55)
T PF04824_consen    4 ESLSLSQLPEGMTRKEAARAFYELLVLATKGYIDVKQEEPYGDIEISPGPKF   55 (55)
T ss_dssp             HHTT----------HHHHHHHHHHHHHHHHTSEEEEESSTT--EEEEE-GGG
T ss_pred             cccHHHHhhCCCCHHHHHHHHHHHHHHhhCCeEEeecCCCCCCeEEeeCCCC
Confidence            4679999999999999999999999999999999999999999999999986

Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0000228 nuclear chromosome; PDB: 1W1W_E.

>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]

Probab=95.83  E-value=0.011  Score=58.55  Aligned_cols=56  Identities=21%  Similarity=0.323  Sum_probs=48.6

Q ss_pred             hhhcCCCCCcchhhhhccCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeecc
Q 008432          506 HFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISR  561 (565)
Q Consensus       506 ~f~~~g~p~~~sL~~l~~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~  561 (565)
                      .|+.......+++..|+.+.+|.+..-.|--+|.|..+|.|.+.|.++||+|.|..
T Consensus       186 l~~~L~~~~~~~f~~l~~~~~r~~~V~tFLAlLeL~k~~~i~i~Q~e~fgdI~I~~  241 (242)
T PF02616_consen  186 LLDKLSKKGWVSFSELFEEPSRSEVVVTFLALLELVKQGKIEIEQEEPFGDIYIEL  241 (242)
T ss_pred             HHHhhccCCceeHHHHcCcCCcCeeHHHHHHHHHHhhcCcEEEEEcCCCCceEEEe
Confidence            34443333469999999999999999999999999999999999999999999974

The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes [].

>PRK00104 scpA segregation and condensation protein A; Reviewed

Probab=95.07  E-value=0.05  Score=54.82  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             HHhhhhcCCCCCcchhhhhccCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeeccCC
Q 008432          503 MKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGK  563 (565)
Q Consensus       503 l~~~f~~~g~p~~~sL~~l~~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gp  563 (565)
                      +...+...|.   +++..|+.+.+|.+.+--|--+|.|..+|.|.|+|+++||+|.|.++.
T Consensus       182 i~~~l~~~~~---~~f~~l~~~~~~~~~v~tFLAlLEL~k~~~i~l~Q~~~f~~I~i~~~~  239 (242)
T PRK00104        182 ILELLESKKR---LSFSELFKEPSKNEFVVTFLALLELIKLQEIIVEQEENFGEIYLEKGE  239 (242)
T ss_pred             HHHHHhhCCc---EeHHHHhCCCCchhhHHHHHHHHHHHhcCeeEEEEcCCCCeEEEEeCC
Confidence            3344434454   899999888999999999999999999999999999999999998764

>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]

Probab=89.71  E-value=0.71  Score=46.74  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=42.3

Q ss_pred             HHHHhhhhcCCCCCcchhhhhccCCcHHHHHH-HHHHHHHhhhcCeEEeeccCCCcceeeccCC
Q 008432          501 MQMKSHFEMPGAPKVESLNNLAAGLNRKAAAM-LFYQTCVLATSDVLKVEQNKPYGDILISRGK  563 (565)
Q Consensus       501 ~~l~~~f~~~g~p~~~sL~~l~~g~tRk~AAr-~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gp  563 (565)
                      ..+-..+...|   ...+..+..-.+++...- -|--+|.|...|-|.+.|++|||+|.|+.+.
T Consensus       180 ~~il~~l~~~~---~~~~~~~~~~~~~~~~vv~~FlAlLeL~k~~~v~l~Qee~fgdI~i~~~~  240 (248)
T COG1354         180 EELLARLEARG---VLRFSDLFSPEERKDEVVSTFLALLELVKEGKVELEQEEPFGDIYIRLLG  240 (248)
T ss_pred             HHHHHHHhhcC---cccHHHhcccccchhHHHHHHHHHHHHHhcCceEEEecccccceEEEecC
Confidence            33334444444   456666555444455555 6667889999999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	565
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1w1w_E	121	SCC1, sister chromatid cohesion protein 1; cohesin	8e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 77/498 (15%), Positives = 137/498 (27%), Gaps = 169/498 (33%)

Query: 109 DVEDLEQFLNYPNATATMEFQQNAYFSMRLD--DVDDSFLQ--SNVGVDDSLQNLHQANV 164
           D E  E    Y        F+    F    D  DV D      S   +D  + +      
Sbjct: 8   DFETGEH--QYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMS-----K 58

Query: 165 DDITLTER-FDTY-QANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEP 222
           D ++ T R F T      +   +F    +EE       F          LM   P + E 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKF----------LMS--PIKTEQ 102

Query: 223 QRADVIHDQHPEQQNQQSNGSKEEARQDQQRKGP---LKRKTR----------------- 262
           ++  ++   + EQ+++  N ++  A+ +  R  P   L++                    
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 263 KQ---AAFAMDYD-QTMIPGEVYQSWLKDASDISSRRRRKRKASTDLLSTMKIASLMEMP 318
           K        + Y  Q  +  +++  WL     + +                   +++EM 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF--WLN----LKNCNS--------------PETVLEM- 201

Query: 319 PVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTSPPQPPEPSLSSPPGLGRY 378
                                L KL  +            ++         S    L R 
Sbjct: 202 ---------------------LQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRR- 236

Query: 379 EEPAAGYFLKVKPFE-------DIHS-------GVGSQSIPSSASGHGILSHNSEVNSSR 424
                   LK KP+E       ++ +        +  + +        + +   +V    
Sbjct: 237 -------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--------LTTRFKQVTDFL 281

Query: 425 SNQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPTPTPV 484
           S       S  H    L P  +E            S L +       +L       P  V
Sbjct: 282 SAATTTHISLDHHSMTLTP--DEV----------KSLLLKYLDCRPQDL-------PREV 322

Query: 485 PVTNPPPVDKITDSIRMQMKSHFE---MPGAPKVE-----SLNNLAAGLNRKAAAMLFYQ 536
             TNP  +  I +SIR    + ++        K+      SLN L     RK      + 
Sbjct: 323 LTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----MFD 376

Query: 537 TC------VLATSDVLKV 548
                       + +L +
Sbjct: 377 RLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 83/291 (28%)

Query: 14  LGQIWMAATMHAKMNR----KKLN--KLN-LIKICEEILNPAVPMAL--RLSGILMGGVV 64
           L  I  A ++   +      K +N  KL  +I+    +L PA    +  RLS +      
Sbjct: 330 LSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAH 386

Query: 65  IVYEKKIEINAAWKTKVARDP----------TLLPKGKSQAKREAVTLPEI------KET 108
           I     + +   W   +  D           +L+ K   Q K   +++P I      K  
Sbjct: 387 IP-TILLSL--IWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLE 440

Query: 109 DVEDLEQFL--------NYPNATATMEFQQNAYF---------SMRLDD---------VD 142
           +   L + +         + +      +    YF         ++   +         +D
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 143 DSFLQSNVGVDDSLQNLHQANVDDITLTERFDTY-QANADTYDRFERFDIEEDTETQLNF 201
             FL+  +  D +  N   + ++ +   + +  Y   N   Y+R     I       L+F
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-AI-------LDF 551

Query: 202 TSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQDQQ 252
             + +  +        + D  + A            +     +E  +Q Q+
Sbjct: 552 LPKIEENLIC----SKYTDLLRIA---------LMAEDEAIFEEAHKQVQR 589

>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Length = 121

 Score = 55.9 bits (134), Expect = 8e-10
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 5/111 (4%)

Query: 460 SRLSERSSTPDPELLVETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESL- 518
               E +         +T      V  T      K    +   ++             + 
Sbjct: 6   HHFPEENIIDAKTRNEQTTIQTEKVRPTPGEVASKAIVQMAKILRKELSEEKEVIFTDVL 65

Query: 519 ----NNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
               N     + ++ A+  F+    LAT   + + Q + +G+I I     +
Sbjct: 66  KSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPAL 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	565
1w1w_E	121	SCC1, sister chromatid cohesion protein 1; cohesin	99.82

>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57

Probab=99.82  E-value=2.7e-21  Score=173.88  Aligned_cols=73  Identities=14%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             CCcchhHHHHHHHHHhhhhcCCCCCcchhhhhc--------cCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeecc
Q 008432          490 PPVDKITDSIRMQMKSHFEMPGAPKVESLNNLA--------AGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISR  561 (565)
Q Consensus       490 ~p~~~~t~~v~~~l~~~f~~~g~p~~~sL~~l~--------~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~  561 (565)
                      .++.++|+.|+++|+.+|+..+   .+++++|+        .|+|||+|||||||+|||+|+|||+|+|++|||||.|++
T Consensus        36 ~~~Sk~T~~v~~~Lr~~f~~~~---~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ~epyGdI~I~~  112 (121)
T 1w1w_E           36 EVASKAIVQMAKILRKELSEEK---EVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDA  112 (121)
T ss_dssp             ----CHHHHHHHHHHHHTTSCS---CEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEE
T ss_pred             CcccHHHHHHHHHHHHHhCCCC---CccHHHHHhhccccccCCCCHHHHHHHHHHHHHHccCCeeEEecCCCCCceEEee
Confidence            4788999999999999999954   58999985        599999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008432          562 GKRM  565 (565)
Q Consensus       562 gpk~  565 (565)
                      ||+|
T Consensus       113 ~p~L  116 (121)
T 1w1w_E          113 KPAL  116 (121)
T ss_dssp             CGGG
T ss_pred             Cchh
Confidence            9986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	565
d1w1we_	79	a.4.5.57 (E:) Sister chromatid cohesion protein 1	6e-14

>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (158), Expect = 6e-14
 Identities = 10/50 (20%), Positives = 21/50 (42%)

Query: 516 ESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
              N     + ++ A+  F+    LAT   + + Q + +G+I I     +
Sbjct: 28  SQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPAL 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	565
d1w1we_	79	Sister chromatid cohesion protein 1 (SCC1), C-term	99.69

>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.9e-18  Score=140.43  Aligned_cols=69  Identities=14%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHhhhhcCCCCCcchhhhh--------ccCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeeccCCCC
Q 008432          494 KITDSIRMQMKSHFEMPGAPKVESLNNL--------AAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM  565 (565)
Q Consensus       494 ~~t~~v~~~l~~~f~~~g~p~~~sL~~l--------~~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gpk~  565 (565)
                      |+|-.++.-|+.+|+..+.   +.++.|        ..++||++||++||++|||+|+|+|+|+|.+|||||.|++||+|
T Consensus         1 K~t~q~a~~Lr~el~~~~~---v~Fsdll~~~~~~~~~~~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~~~p~l   77 (79)
T d1w1we_           1 KAIVQMAKILRKELSEEKE---VIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPAL   77 (79)
T ss_dssp             CHHHHHHHHHHHHTTSCSC---EEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEECGGG
T ss_pred             ChHHHHHHHHHHHHcccCc---eehhhhhhhhhcccccCCCHHHHHHHHHHHHHHccCCeEEEEcCCCcCceEEeeCccc
Confidence            4677889999999998666   444444        45899999999999999999999999999999999999999986